RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14860
         (711 letters)



>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 252

 Score = 96.2 bits (238), Expect = 8e-23
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 5/161 (3%)

Query: 55  YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALST 114
           + W GNLVT + W+  WL+EG   +LE +    +          +    +    +     
Sbjct: 91  HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGE 150

Query: 115 SHPISVTVHDPVEIEA--IFDTISYSKGAAILYMLEKFLGQGTL-RAGLNDYLNTHKYGN 171
           +HP +  V D  +I+    + ++ Y KG A+L+ LE+ LG   +    L  Y+    Y +
Sbjct: 151 THPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS 210

Query: 172 AETKDFWSVLSKHSNHSIN--VKAIMDTWSRQMGFPVIRIS 210
             T D+   L  +    ++   +   + W    G P I+ +
Sbjct: 211 ITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPN 251



 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 669 GVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPK 710
           G    V++  + + ++ +  + +  M+   E+  G PY   +
Sbjct: 7   GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQ 47


>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 208

 Score = 62.9 bits (152), Expect = 8e-12
 Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 2/105 (1%)

Query: 552 IKYGGVKEWQNCWAKYNSTRVPSEPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRD 611
           I +    +               E     +  +  + R+  PC D P  K  +   +   
Sbjct: 104 ISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVP 163

Query: 612 RFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVV 656
           +  ++L +                     F + V +  YL+A VV
Sbjct: 164 KELVALMSAIRDGETPDP--EDPSRKIYKFIQKVPIPCYLIALVV 206


>d1j7na3 d.166.1.1 (A:264-550) Anthrax toxin lethal factor, middle
           domain {Bacillus anthracis [TaxId: 1392]}
          Length = 287

 Score = 29.2 bits (65), Expect = 1.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 451 YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPI 488
           Y  W    +H+QHWS SLSE          +KKL  PI
Sbjct: 5   YEKWEKIKQHYQHWSDSLSEEG-----RGLLKKLQIPI 37


>d1j2ga2 d.96.1.4 (A:159-312) Urate oxidase (uricase) {Bacillus sp.,
           strain TB-90 [TaxId: 1409]}
          Length = 154

 Score = 26.3 bits (58), Expect = 8.7
 Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 312 RVTYDDHLWDALIQ-ALKTNHEVFSPADRAS-LIDDAFTLSR 351
                +H WD +++   ++  +V++            FT+++
Sbjct: 113 YFESQNHTWDKIVEEIPESEGKVYTEPRPPYGFQ--CFTVTQ 152



 Score = 26.3 bits (58), Expect = 8.7
 Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 390 RVTYDDHLWDALIQ-ALKTNHEVFSPADRAS-LIDDAFTLSR 429
                +H WD +++   ++  +V++            FT+++
Sbjct: 113 YFESQNHTWDKIVEEIPESEGKVYTEPRPPYGFQ--CFTVTQ 152


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,775,687
Number of extensions: 133484
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 10
Length of query: 711
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 619
Effective length of database: 1,144,436
Effective search space: 708405884
Effective search space used: 708405884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)