BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14861
(1648 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NF1|A Chain A, The Gap Related Domain Of Neurofibromin
Length = 333
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/336 (69%), Positives = 282/336 (83%), Gaps = 6/336 (1%)
Query: 283 ETVLADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLL 342
ETVLADRFE LV+LVT++ D+GEL IAMALANVV SQ DELARV VTLFD++H+L LL
Sbjct: 1 ETVLADRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLL 60
Query: 343 WNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLL---DKAHV 399
WNMF +EVE++D MQTLFRGNSL SK+M FCFK+YGA+YLQ LL+PL+ ++ D HV
Sbjct: 61 WNMFSKEVELADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLLDPLLRIVITSSDWQHV 120
Query: 400 AFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFP 459
+FEVDP RL+PSE++E N+R L+ T+K F AII S+ FPPQLRS+CHCLYQV+S+RFP
Sbjct: 121 SFEVDPTRLEPSESLEENQRNLLQMTEKFFHAIISSSSEFPPQLRSVCHCLYQVVSQRFP 180
Query: 460 LQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF 519
QN+IGAVG+ +FLRFINPAIV+P E GI++K PP ++RGL LMSKILQ+IANHV F
Sbjct: 181 ---QNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPIIERGLKLMSKILQSIANHVLF 237
Query: 520 SKEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQ 579
+KE HM PFNDF++++F AR+FF+ IASDC T DA HS+SFISD NVLALHRLL+N+Q
Sbjct: 238 TKEEHMRPFNDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFISDGNVLALHRLLWNNQ 297
Query: 580 EKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEH 615
EKIG YLSS+RDHK VGRRPFDKMATLLAYLGPPEH
Sbjct: 298 EKIGQYLSSNRDHKAVGRRPFDKMATLLAYLGPPEH 333
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/336 (69%), Positives = 282/336 (83%), Gaps = 6/336 (1%)
Query: 925 ETVLADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLL 984
ETVLADRFE LV+LVT++ D+GEL IAMALANVV SQ DELARV VTLFD++H+L LL
Sbjct: 1 ETVLADRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLL 60
Query: 985 WNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLL---DKAHV 1041
WNMF +EVE++D MQTLFRGNSL SK+M FCFK+YGA+YLQ LL+PL+ ++ D HV
Sbjct: 61 WNMFSKEVELADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLLDPLLRIVITSSDWQHV 120
Query: 1042 AFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFP 1101
+FEVDP RL+PSE++E N+R L+ T+K F AII S+ FPPQLRS+CHCLYQV+S+RFP
Sbjct: 121 SFEVDPTRLEPSESLEENQRNLLQMTEKFFHAIISSSSEFPPQLRSVCHCLYQVVSQRFP 180
Query: 1102 LQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF 1161
QN+IGAVG+ +FLRFINPAIV+P E GI++K PP ++RGL LMSKILQ+IANHV F
Sbjct: 181 ---QNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPIIERGLKLMSKILQSIANHVLF 237
Query: 1162 SKEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQ 1221
+KE HM PFNDF++++F AR+FF+ IASDC T DA HS+SFISD NVLALHRLL+N+Q
Sbjct: 238 TKEEHMRPFNDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFISDGNVLALHRLLWNNQ 297
Query: 1222 EKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEH 1257
EKIG YLSS+RDHK VGRRPFDKMATLLAYLGPPEH
Sbjct: 298 EKIGQYLSSNRDHKAVGRRPFDKMATLLAYLGPPEH 333
>pdb|3P7Z|A Chain A, Crystal Structure Of The Neurofibromin Sec14-Ph Module
Containing The Patient Derived Mutation I1584v
pdb|3P7Z|B Chain B, Crystal Structure Of The Neurofibromin Sec14-Ph Module
Containing The Patient Derived Mutation I1584v
Length = 276
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/277 (60%), Positives = 213/277 (76%), Gaps = 3/277 (1%)
Query: 1277 MSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLL 1336
M ++ FEE M + + EKEEFK++K+L+IFYQAG S+ G+PVFYY+ARR+KT + N DLL
Sbjct: 3 MGSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPVFYYVARRFKTGQINGDLL 62
Query: 1337 IYHVILTMKPFCHAPYELVIDFTHASSENRFKTEFLQKWFYVLSEVXXXXXXXXXXXXCN 1396
IYHV+LT+KP+ PYE+V+D TH NRFKT+FL KWF V CN
Sbjct: 63 IYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCN 122
Query: 1397 SWVREYTKYHEKILLPIFRNNKKLIFLDSPSKLNDYIDHNQQKLPGATLALDEDLKVFNN 1456
SWVREYTKYHE++L + + +K+L+F+D P KL ++I+H QQKLP ATLAL+EDLKVF+N
Sbjct: 123 SWVREYTKYHERLLTGL-KGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLKVFHN 181
Query: 1457 GLKLSHKDTKVAIKVGPTAVQITSLEKTKVLSHSVLLNDIYYAHEIEEVCLVDDNQFTLS 1516
LKL+HKDTKV+IKVG TAVQ+TS E+TKVL SV LNDIYYA EIEE+CLVD+NQFTL+
Sbjct: 182 ALKLAHKDTKVSIKVGSTAVQVTSAERTKVLGQSVFLNDIYYASEIEEICLVDENQFTLT 241
Query: 1517 FVKDSQTQVLSFIHNECDSIVQAIIHIRNRWELSQSD 1553
+Q L+F+H EC++IVQ+IIHIR RWELSQ D
Sbjct: 242 IA--NQGTPLTFMHQECEAIVQSIIHIRTRWELSQPD 276
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 62/84 (73%), Gaps = 3/84 (3%)
Query: 635 MSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLL 694
M ++ FEE M + + EKEEFK++K+L+IFYQAG S+ G+PVFYY+ARR+KT + N DLL
Sbjct: 3 MGSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPVFYYVARRFKTGQINGDLL 62
Query: 695 IYHVILTM---YVRHIDMTVHAVH 715
IYHV+LT+ Y + ++ V H
Sbjct: 63 IYHVLLTLKPYYAKPYEIVVDLTH 86
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 1614 MSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAG 1647
M ++ FEE M + + EKEEFK++K+L+IFYQAG
Sbjct: 3 MGSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAG 36
>pdb|2E2X|A Chain A, Sec14 Homology Module Of Neurofibromin In Complex With
Phosphatitylethanolamine
pdb|2E2X|B Chain B, Sec14 Homology Module Of Neurofibromin In Complex With
Phosphatitylethanolamine
Length = 277
Score = 361 bits (927), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 166/276 (60%), Positives = 212/276 (76%), Gaps = 3/276 (1%)
Query: 1278 SNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLI 1337
++ FEE M + + EKEEFK++K+L+IFYQAG S+ G+P+FYY+ARR+KT + N DLLI
Sbjct: 5 GSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLI 64
Query: 1338 YHVILTMKPFCHAPYELVIDFTHASSENRFKTEFLQKWFYVLSEVXXXXXXXXXXXXCNS 1397
YHV+LT+KP+ PYE+V+D TH NRFKT+FL KWF V CNS
Sbjct: 65 YHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNS 124
Query: 1398 WVREYTKYHEKILLPIFRNNKKLIFLDSPSKLNDYIDHNQQKLPGATLALDEDLKVFNNG 1457
WVREYTKYHE++L + + +K+L+F+D P KL ++I+H QQKLP ATLAL+EDLKVF+N
Sbjct: 125 WVREYTKYHERLLTGL-KGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLKVFHNA 183
Query: 1458 LKLSHKDTKVAIKVGPTAVQITSLEKTKVLSHSVLLNDIYYAHEIEEVCLVDDNQFTLSF 1517
LKL+HKDTKV+IKVG TAVQ+TS E+TKVL SV LNDIYYA EIEE+CLVD+NQFTL+
Sbjct: 184 LKLAHKDTKVSIKVGSTAVQVTSAERTKVLGQSVFLNDIYYASEIEEICLVDENQFTLTI 243
Query: 1518 VKDSQTQVLSFIHNECDSIVQAIIHIRNRWELSQSD 1553
+Q L+F+H EC++IVQ+IIHIR RWELSQ D
Sbjct: 244 A--NQGTPLTFMHQECEAIVQSIIHIRTRWELSQPD 277
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Query: 636 SNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLI 695
++ FEE M + + EKEEFK++K+L+IFYQAG S+ G+P+FYY+ARR+KT + N DLLI
Sbjct: 5 GSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLI 64
Query: 696 YHVILTM---YVRHIDMTVHAVH 715
YHV+LT+ Y + ++ V H
Sbjct: 65 YHVLLTLKPYYAKPYEIVVDLTH 87
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 1615 SNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAG 1647
++ FEE M + + EKEEFK++K+L+IFYQAG
Sbjct: 5 GSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAG 37
>pdb|3PEG|B Chain B, Crystal Structure Of Neurofibromins Sec14-Ph Module
Containing A Patient Derived Duplication (Td)
pdb|3PEG|A Chain A, Crystal Structure Of Neurofibromins Sec14-Ph Module
Containing A Patient Derived Duplication (Td)
Length = 290
Score = 354 bits (909), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 167/291 (57%), Positives = 213/291 (73%), Gaps = 17/291 (5%)
Query: 1277 MSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLL 1336
M ++ FEE M + + EKEEFK++K+L+IFYQAG S+ G+P+FYY+ARR+KT + N DLL
Sbjct: 3 MGSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLL 62
Query: 1337 IYHVILTMKPFCHAPYELVIDFTHASSENRFKTEFLQKWFYVLSEVXXXXXXXXXXXXCN 1396
IYHV+LT+KP+ PYE+V+D TH NRFKT+FL KWF V CN
Sbjct: 63 IYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCN 122
Query: 1397 SWVREYTKYHEKILLPIFRNNKKLIFLDSPSKLNDYID--------------HNQQKLPG 1442
SWVREYTKYHE++L + + +K+L+F+D P KL ++I+ H QQKLP
Sbjct: 123 SWVREYTKYHERLLTGL-KGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALGHEQQKLPA 181
Query: 1443 ATLALDEDLKVFNNGLKLSHKDTKVAIKVGPTAVQITSLEKTKVLSHSVLLNDIYYAHEI 1502
ATLAL+EDLKVF+N LKL+HKDTKV+IKVG TAVQ+TS E+TKVL SV LNDIYYA EI
Sbjct: 182 ATLALEEDLKVFHNALKLAHKDTKVSIKVGSTAVQVTSAERTKVLGQSVFLNDIYYASEI 241
Query: 1503 EEVCLVDDNQFTLSFVKDSQTQVLSFIHNECDSIVQAIIHIRNRWELSQSD 1553
EE+CLVD+NQFTL+ +Q L+F+H EC++IVQ+IIHIR RWELSQ D
Sbjct: 242 EEICLVDENQFTLTIA--NQGTPLTFMHQECEAIVQSIIHIRTRWELSQPD 290
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 62/84 (73%), Gaps = 3/84 (3%)
Query: 635 MSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLL 694
M ++ FEE M + + EKEEFK++K+L+IFYQAG S+ G+P+FYY+ARR+KT + N DLL
Sbjct: 3 MGSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLL 62
Query: 695 IYHVILTM---YVRHIDMTVHAVH 715
IYHV+LT+ Y + ++ V H
Sbjct: 63 IYHVLLTLKPYYAKPYEIVVDLTH 86
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 1614 MSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAG 1647
M ++ FEE M + + EKEEFK++K+L+IFYQAG
Sbjct: 3 MGSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAG 36
>pdb|2D4Q|A Chain A, Crystal Structure Of The Sec-Ph Domain Of The Human
Neurofibromatosis Type 1 Protein
pdb|2D4Q|B Chain B, Crystal Structure Of The Sec-Ph Domain Of The Human
Neurofibromatosis Type 1 Protein
Length = 257
Score = 348 bits (892), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 161/260 (61%), Positives = 203/260 (78%), Gaps = 3/260 (1%)
Query: 1294 KEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTMKPFCHAPYE 1353
KEEFK++K+L+IFYQAG S+ G+P+FYY+ARR+KT + N DLLIYHV+LT+KP+ PYE
Sbjct: 1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYE 60
Query: 1354 LVIDFTHASSENRFKTEFLQKWFYVLSEVXXXXXXXXXXXXCNSWVREYTKYHEKILLPI 1413
+V+D TH NRFKT+FL KWF V CNSWVREYTKYHE++L +
Sbjct: 61 IVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGL 120
Query: 1414 FRNNKKLIFLDSPSKLNDYIDHNQQKLPGATLALDEDLKVFNNGLKLSHKDTKVAIKVGP 1473
+ +K+L+F+D P KL ++I+H QQKLP ATLAL+EDLKVF+N LKL+HKDTKV+IKVG
Sbjct: 121 -KGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLKVFHNALKLAHKDTKVSIKVGS 179
Query: 1474 TAVQITSLEKTKVLSHSVLLNDIYYAHEIEEVCLVDDNQFTLSFVKDSQTQVLSFIHNEC 1533
TAVQ+TS E+TKVL SV LNDIYYA EIEE+CLVD+NQFTL+ +Q L+F+H EC
Sbjct: 180 TAVQVTSAERTKVLGQSVFLNDIYYASEIEEICLVDENQFTLTIA--NQGTPLTFMHQEC 237
Query: 1534 DSIVQAIIHIRNRWELSQSD 1553
++IVQ+IIHIR RWELSQ D
Sbjct: 238 EAIVQSIIHIRTRWELSQPD 257
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 52/67 (77%), Gaps = 3/67 (4%)
Query: 652 KEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTM---YVRHID 708
KEEFK++K+L+IFYQAG S+ G+P+FYY+ARR+KT + N DLLIYHV+LT+ Y + +
Sbjct: 1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYE 60
Query: 709 MTVHAVH 715
+ V H
Sbjct: 61 IVVDLTH 67
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/17 (76%), Positives = 17/17 (100%)
Query: 1631 KEEFKSIKSLNIFYQAG 1647
KEEFK++K+L+IFYQAG
Sbjct: 1 KEEFKALKTLSIFYQAG 17
>pdb|3PG7|A Chain A, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain
(Del1750 Mutant)
pdb|3PG7|B Chain B, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain
(Del1750 Mutant)
Length = 256
Score = 341 bits (875), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/260 (61%), Positives = 202/260 (77%), Gaps = 4/260 (1%)
Query: 1294 KEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTMKPFCHAPYE 1353
KEEFK++K+L+IFYQAG S+ G+P+FYY+ARR+KT + N DLLIYHV+LT+KP+ PYE
Sbjct: 1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYE 60
Query: 1354 LVIDFTHASSENRFKTEFLQKWFYVLSEVXXXXXXXXXXXXCNSWVREYTKYHEKILLPI 1413
+V+D TH NRFKT+FL KWF V CNSWVREYTKYHE++L +
Sbjct: 61 IVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGL 120
Query: 1414 FRNNKKLIFLDSPSKLNDYIDHNQQKLPGATLALDEDLKVFNNGLKLSHKDTKVAIKVGP 1473
+ +K+L+F+D P KL ++I+H QQKLP ATLAL+EDLKVF+N LKL+HKDTKV+IKVG
Sbjct: 121 -KGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLKVFHNALKLAHKDTKVSIKVGS 179
Query: 1474 TAVQITSLEKTKVLSHSVLLNDIYYAHEIEEVCLVDDNQFTLSFVKDSQTQVLSFIHNEC 1533
TAVQ+TS E+T VL SV LNDIYYA EIEE+CLVD+NQFTL+ +Q L+F+H EC
Sbjct: 180 TAVQVTSAERT-VLGQSVFLNDIYYASEIEEICLVDENQFTLTIA--NQGTPLTFMHQEC 236
Query: 1534 DSIVQAIIHIRNRWELSQSD 1553
++IVQ+IIHIR RWELSQ D
Sbjct: 237 EAIVQSIIHIRTRWELSQPD 256
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 52/67 (77%), Gaps = 3/67 (4%)
Query: 652 KEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTM---YVRHID 708
KEEFK++K+L+IFYQAG S+ G+P+FYY+ARR+KT + N DLLIYHV+LT+ Y + +
Sbjct: 1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYE 60
Query: 709 MTVHAVH 715
+ V H
Sbjct: 61 IVVDLTH 67
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/17 (76%), Positives = 17/17 (100%)
Query: 1631 KEEFKSIKSLNIFYQAG 1647
KEEFK++K+L+IFYQAG
Sbjct: 1 KEEFKALKTLSIFYQAG 17
>pdb|1WQ1|G Chain G, Ras-Rasgap Complex
pdb|1WER|A Chain A, Ras-Gtpase-Activating Domain Of Human P120gap
Length = 334
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 149/293 (50%), Gaps = 5/293 (1%)
Query: 291 EELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREV 350
EE + LI K EL + AL++V + LA + + +F + + LL + RE+
Sbjct: 8 EEYSEFKELILQK-ELHVVYALSHVCGQDR-TLLASILLRIFLHEKLESLLLCTLNDREI 65
Query: 351 EVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP 410
+ D TLFR +L S LM K ++ + L+ I +++ + E+ P++L+
Sbjct: 66 SMEDEATTLFRATTLASTLMEQYMKATATQFVHHALKDSILKIMESKQ-SCELSPSKLEK 124
Query: 411 SENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAVG 470
+E++ N L++ ++ + I +++ PP LR + CL + + ++P V
Sbjct: 125 NEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNTTMRTRVVS 184
Query: 471 TVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF-SKEAHMIPFN 529
+FLR I PAI+ P+ II+ + P R L+L++K +QN+AN VEF +KE +M N
Sbjct: 185 GFVFLRLICPAILNPRMFNIISDSPSPIAARTLILVAKSVQNLANLVEFGAKEPYMEGVN 244
Query: 530 DFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKI 582
F++++ F ++ + D HS + +S ++ ALH + H +++
Sbjct: 245 PFIKSNKHRMIMFLDELGNVPELPDTTEHSRTDLS-RDLAALHEICVAHSDEL 296
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 149/293 (50%), Gaps = 5/293 (1%)
Query: 933 EELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREV 992
EE + LI K EL + AL++V + LA + + +F + + LL + RE+
Sbjct: 8 EEYSEFKELILQK-ELHVVYALSHVCGQDR-TLLASILLRIFLHEKLESLLLCTLNDREI 65
Query: 993 EVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP 1052
+ D TLFR +L S LM K ++ + L+ I +++ + E+ P++L+
Sbjct: 66 SMEDEATTLFRATTLASTLMEQYMKATATQFVHHALKDSILKIMESKQ-SCELSPSKLEK 124
Query: 1053 SENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAVG 1112
+E++ N L++ ++ + I +++ PP LR + CL + + ++P V
Sbjct: 125 NEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNTTMRTRVVS 184
Query: 1113 TVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF-SKEAHMIPFN 1171
+FLR I PAI+ P+ II+ + P R L+L++K +QN+AN VEF +KE +M N
Sbjct: 185 GFVFLRLICPAILNPRMFNIISDSPSPIAARTLILVAKSVQNLANLVEFGAKEPYMEGVN 244
Query: 1172 DFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKI 1224
F++++ F ++ + D HS + +S ++ ALH + H +++
Sbjct: 245 PFIKSNKHRMIMFLDELGNVPELPDTTEHSRTDLS-RDLAALHEICVAHSDEL 296
>pdb|3FAY|A Chain A, Crystal Structure Of The Gap-Related Domain Of Iqgap1
Length = 387
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 119/286 (41%), Gaps = 63/286 (22%)
Query: 354 DCMQTLFRGN-SLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDP------- 405
D +Q + GN ++ +++F G + L+ +L P++ + D + + DP
Sbjct: 81 DQIQEIVTGNPTVIKXVVSFNRGARGQNALRQILAPVVKEIXDDKSLNIKTDPVDIYKSW 140
Query: 406 ------------------------------ARLDPSENIENNRRELISWTKKVFDAIIDS 435
RLD S I N R + T K AI+ S
Sbjct: 141 VNQXESQTGEASKLPYDVTPEQALAHEEVKTRLDSS--IRNXR----AVTDKFLSAIVSS 194
Query: 436 ADNFPPQLRSMCHCLYQVLSKRFPLQPQNNI-GAVGTVIFLRFINPAIVTPQEMGIINKT 494
D P R + L L ++FP ++ + +G +++ R+ NPAIV P II+ +
Sbjct: 195 VDKIPYGXRFIAKVLKDSLHEKFPDAGEDELLKIIGNLLYYRYXNPAIVAPDAFDIIDLS 254
Query: 495 VPPPV----KRGLMLMSKILQNIANHVEF-SKEAHMIPFNDFLRAHFVIARQFFIQIASD 549
+ +R L ++K LQ+ A++ F AH+ N++L + R+FF Q A D
Sbjct: 255 AGGQLTTDQRRNLGSIAKXLQHAASNKXFLGDNAHLSIINEYLSQSYQKFRRFF-QTACD 313
Query: 550 C--------VTEDAGAHSMS----FISDTNVLALHRLLYNHQEKIG 583
V E + +++ +IS ++ H LL +HQ+ I
Sbjct: 314 VPELQDKFNVDEYSDLVTLTKPVIYISIGEIINTHTLLLDHQDAIA 359
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 119/286 (41%), Gaps = 63/286 (22%)
Query: 996 DCMQTLFRGN-SLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDP------- 1047
D +Q + GN ++ +++F G + L+ +L P++ + D + + DP
Sbjct: 81 DQIQEIVTGNPTVIKXVVSFNRGARGQNALRQILAPVVKEIXDDKSLNIKTDPVDIYKSW 140
Query: 1048 ------------------------------ARLDPSENIENNRRELISWTKKVFDAIIDS 1077
RLD S I N R + T K AI+ S
Sbjct: 141 VNQXESQTGEASKLPYDVTPEQALAHEEVKTRLDSS--IRNXR----AVTDKFLSAIVSS 194
Query: 1078 ADNFPPQLRSMCHCLYQVLSKRFPLQPQNNI-GAVGTVIFLRFINPAIVTPQEMGIINKT 1136
D P R + L L ++FP ++ + +G +++ R+ NPAIV P II+ +
Sbjct: 195 VDKIPYGXRFIAKVLKDSLHEKFPDAGEDELLKIIGNLLYYRYXNPAIVAPDAFDIIDLS 254
Query: 1137 VPPPV----KRGLMLMSKILQNIANHVEF-SKEAHMIPFNDFLRAHFVIARQFFIQIASD 1191
+ +R L ++K LQ+ A++ F AH+ N++L + R+FF Q A D
Sbjct: 255 AGGQLTTDQRRNLGSIAKXLQHAASNKXFLGDNAHLSIINEYLSQSYQKFRRFF-QTACD 313
Query: 1192 C--------VTEDAGAHSMS----FISDTNVLALHRLLYNHQEKIG 1225
V E + +++ +IS ++ H LL +HQ+ I
Sbjct: 314 VPELQDKFNVDEYSDLVTLTKPVIYISIGEIINTHTLLLDHQDAIA 359
>pdb|3BXJ|A Chain A, Crystal Structure Of The C2-Gap Fragment Of Syngap
pdb|3BXJ|B Chain B, Crystal Structure Of The C2-Gap Fragment Of Syngap
Length = 483
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 96/193 (49%), Gaps = 9/193 (4%)
Query: 359 LFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNR 418
+FR N+L +K + ++ G YL++ + I L + EVDP + S ++ ++
Sbjct: 232 IFRENTLATKAIEEYMRLIGQKYLKDAIGEFIRALYESEENC-EVDPIKCTAS-SLAEHQ 289
Query: 419 RELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIG--AVGTVIFLR 476
L + +++S FP +L+ + + R + + +I + +FLR
Sbjct: 290 ANLRMCCELALCKVVNSHCVFPRELKEV----FASWRLRCAERGREDIADRLISASLFLR 345
Query: 477 FINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFSKEAHMIPF-NDFLRAH 535
F+ PAI++P G++ + R L L++K++QN+AN +F+ + + F N+FL
Sbjct: 346 FLCPAIMSPSLFGLMQEYPDEQTSRTLTLIAKVIQNLANFSKFTSKEDFLGFMNEFLELE 405
Query: 536 FVIARQFFIQIAS 548
+ +QF +I++
Sbjct: 406 WGSMQQFLYEISN 418
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 96/193 (49%), Gaps = 9/193 (4%)
Query: 1001 LFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNR 1060
+FR N+L +K + ++ G YL++ + I L + EVDP + S ++ ++
Sbjct: 232 IFRENTLATKAIEEYMRLIGQKYLKDAIGEFIRALYESEENC-EVDPIKCTAS-SLAEHQ 289
Query: 1061 RELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIG--AVGTVIFLR 1118
L + +++S FP +L+ + + R + + +I + +FLR
Sbjct: 290 ANLRMCCELALCKVVNSHCVFPRELKEV----FASWRLRCAERGREDIADRLISASLFLR 345
Query: 1119 FINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFSKEAHMIPF-NDFLRAH 1177
F+ PAI++P G++ + R L L++K++QN+AN +F+ + + F N+FL
Sbjct: 346 FLCPAIMSPSLFGLMQEYPDEQTSRTLTLIAKVIQNLANFSKFTSKEDFLGFMNEFLELE 405
Query: 1178 FVIARQFFIQIAS 1190
+ +QF +I++
Sbjct: 406 WGSMQQFLYEISN 418
>pdb|1XOY|A Chain A, Solution Structure Of At3g04780.1, An Arabidopsis Ortholog
Of The C-Terminal Domain Of Human Thioredoxin-Like
Protein
Length = 161
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 574 LLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATL--LAYLGPPEHKPV-------ESHMFF 624
L ++E G L S D +++ PF+++ L A GP E P + HM F
Sbjct: 40 LKQGYREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCF 99
Query: 625 SSYARWSSIDMSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKS 670
S+ + D + E L K + + +F++++SL IF +A +S
Sbjct: 100 SNVNDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQS 145
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 1216 LLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATL--LAYLGPPEHKPV-------ESHMFF 1266
L ++E G L S D +++ PF+++ L A GP E P + HM F
Sbjct: 40 LKQGYREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCF 99
Query: 1267 SSYARWSSIDMSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKS 1312
S+ + D + E L K + + +F++++SL IF +A +S
Sbjct: 100 SNVNDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQS 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,287,387
Number of Sequences: 62578
Number of extensions: 1741122
Number of successful extensions: 3895
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3839
Number of HSP's gapped (non-prelim): 30
length of query: 1648
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1536
effective length of database: 7,964,601
effective search space: 12233627136
effective search space used: 12233627136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)