Query psy14861
Match_columns 1648
No_of_seqs 614 out of 1412
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 22:41:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1826|consensus 100.0 3E-123 6E-128 1159.1 40.3 923 710-1645 956-1902(2724)
2 KOG1826|consensus 100.0 6.5E-88 1.4E-92 842.7 35.0 1024 108-1645 996-2071(2724)
3 cd05130 RasGAP_Neurofibromin N 100.0 3.3E-70 7.1E-75 640.8 32.2 326 930-1255 1-329 (329)
4 cd05130 RasGAP_Neurofibromin N 100.0 1.2E-69 2.5E-74 636.1 31.3 326 288-613 1-329 (329)
5 cd05391 RasGAP_p120GAP p120GAP 100.0 1.1E-58 2.4E-63 539.7 30.2 290 930-1226 1-291 (315)
6 cd05391 RasGAP_p120GAP p120GAP 100.0 4.6E-58 9.9E-63 534.6 29.1 290 288-584 1-291 (315)
7 cd05392 RasGAP_Neurofibromin_l 100.0 6.8E-57 1.5E-61 535.7 31.6 317 930-1255 1-323 (323)
8 cd05392 RasGAP_Neurofibromin_l 100.0 1.1E-56 2.5E-61 533.8 30.7 317 288-613 1-323 (323)
9 cd05136 RasGAP_DAB2IP The DAB2 100.0 1.2E-54 2.6E-59 506.2 27.9 288 930-1226 1-291 (309)
10 cd05136 RasGAP_DAB2IP The DAB2 100.0 7E-54 1.5E-58 499.8 28.6 288 288-584 1-291 (309)
11 cd05395 RasGAP_RASA4 Ras GTPas 100.0 3.4E-52 7.4E-57 487.3 28.0 265 931-1196 2-288 (337)
12 cd05134 RasGAP_RASA3 RASA3 (or 100.0 7.1E-52 1.5E-56 478.0 27.2 260 931-1193 2-269 (310)
13 cd05134 RasGAP_RASA3 RASA3 (or 100.0 2.1E-51 4.5E-56 474.2 27.4 261 289-552 2-270 (310)
14 cd05395 RasGAP_RASA4 Ras GTPas 100.0 1.6E-51 3.5E-56 481.7 26.0 266 289-555 2-289 (337)
15 cd05128 RasGAP_GAP1_like The G 100.0 1.4E-51 3.1E-56 481.6 25.6 265 289-555 2-274 (315)
16 cd05394 RasGAP_RASA2 RASA2 (or 100.0 1.7E-51 3.8E-56 472.0 25.6 262 289-553 2-274 (313)
17 cd05394 RasGAP_RASA2 RASA2 (or 100.0 2.7E-51 5.9E-56 470.4 26.6 259 931-1192 2-271 (313)
18 cd05128 RasGAP_GAP1_like The G 100.0 4.2E-51 9E-56 477.7 25.5 264 931-1196 2-273 (315)
19 cd05137 RasGAP_CLA2_BUD2 CLA2/ 100.0 6.6E-51 1.4E-55 487.1 24.6 293 895-1193 14-333 (395)
20 cd05137 RasGAP_CLA2_BUD2 CLA2/ 100.0 1.2E-50 2.6E-55 485.0 24.7 293 253-551 14-333 (395)
21 smart00323 RasGAP GTPase-activ 100.0 2.4E-49 5.3E-54 475.5 31.6 314 929-1257 23-338 (344)
22 cd05135 RasGAP_RASAL Ras GTPas 100.0 1.1E-49 2.4E-54 467.6 26.5 262 931-1193 2-286 (333)
23 smart00323 RasGAP GTPase-activ 100.0 7.5E-49 1.6E-53 471.3 31.0 314 287-615 23-338 (344)
24 cd05135 RasGAP_RASAL Ras GTPas 100.0 3.5E-49 7.5E-54 463.5 26.6 264 289-553 2-288 (333)
25 cd05133 RasGAP_IQGAP1 IQGAP1 i 100.0 4.8E-49 1E-53 464.5 21.5 268 977-1257 7-324 (360)
26 cd05132 RasGAP_GAPA GAPA is an 100.0 5.9E-49 1.3E-53 466.9 22.2 269 977-1258 7-320 (331)
27 cd05133 RasGAP_IQGAP1 IQGAP1 i 100.0 8.2E-49 1.8E-53 462.6 21.6 267 337-616 9-325 (360)
28 cd05132 RasGAP_GAPA GAPA is an 100.0 1.5E-48 3.2E-53 463.5 22.5 267 337-616 9-320 (331)
29 cd05131 RasGAP_IQGAP2 IQGAP2 i 100.0 1.4E-47 3.1E-52 453.3 21.2 267 978-1257 8-324 (339)
30 cd05127 RasGAP_IQGAP_related T 100.0 3E-47 6.5E-52 453.5 21.6 267 978-1257 8-318 (325)
31 cd05131 RasGAP_IQGAP2 IQGAP2 i 100.0 4.9E-47 1.1E-51 448.8 21.2 266 337-615 9-324 (339)
32 cd05127 RasGAP_IQGAP_related T 100.0 1.3E-46 2.8E-51 448.1 21.7 266 337-615 9-318 (325)
33 cd04519 RasGAP RasGAP: Ras-GTP 100.0 8.3E-41 1.8E-45 398.4 29.2 293 932-1229 3-296 (318)
34 cd04519 RasGAP RasGAP: Ras-GTP 100.0 3.5E-40 7.5E-45 393.1 28.5 293 290-587 3-296 (318)
35 cd05129 RasGAP_RAP6 Rab5-activ 100.0 1.3E-39 2.9E-44 384.2 23.0 253 289-549 2-292 (353)
36 KOG2059|consensus 100.0 2.9E-39 6.4E-44 386.6 23.4 261 287-550 283-553 (800)
37 cd05129 RasGAP_RAP6 Rab5-activ 100.0 5E-39 1.1E-43 379.4 24.3 253 931-1191 2-292 (353)
38 KOG2059|consensus 100.0 2.1E-38 4.6E-43 379.3 23.7 259 929-1190 283-551 (800)
39 PF00616 RasGAP: GTPase-activa 100.0 4.5E-34 9.9E-39 317.8 17.7 174 983-1157 1-197 (197)
40 PF00616 RasGAP: GTPase-activa 100.0 1.1E-33 2.4E-38 314.6 17.3 174 341-515 1-197 (197)
41 KOG3508|consensus 100.0 2.6E-32 5.6E-37 341.1 20.4 624 305-1225 254-897 (932)
42 KOG3508|consensus 99.9 4.7E-25 1E-29 276.5 19.2 286 931-1225 242-530 (932)
43 KOG2128|consensus 99.9 4.1E-24 8.9E-29 273.9 22.8 309 288-614 748-1102(1401)
44 KOG2128|consensus 99.9 7.1E-24 1.5E-28 271.7 22.9 310 930-1257 748-1103(1401)
45 PF13716 CRAL_TRIO_2: Divergen 99.8 4.5E-21 9.9E-26 204.1 8.8 143 1304-1450 2-149 (149)
46 KOG4406|consensus 99.6 3.1E-16 6.7E-21 181.3 9.8 160 1279-1451 68-228 (467)
47 COG5261 IQG1 Protein involved 99.6 1.1E-14 2.3E-19 178.8 17.2 240 339-582 438-735 (1054)
48 COG5261 IQG1 Protein involved 99.6 7.8E-15 1.7E-19 180.0 14.3 244 978-1224 435-735 (1054)
49 smart00516 SEC14 Domain in hom 99.3 7.2E-12 1.6E-16 134.2 10.5 129 1310-1443 14-152 (158)
50 cd00170 SEC14 Sec14p-like lipi 99.2 3.8E-11 8.1E-16 127.3 10.4 133 1304-1438 9-150 (157)
51 KOG1470|consensus 98.8 2.2E-08 4.8E-13 116.5 10.0 133 1301-1437 96-234 (324)
52 PF00650 CRAL_TRIO: CRAL/TRIO 98.6 2.2E-08 4.7E-13 107.4 5.1 135 1302-1438 5-152 (159)
53 KOG1471|consensus 97.1 0.0011 2.5E-08 79.7 8.1 131 1306-1438 97-249 (317)
54 PF13716 CRAL_TRIO_2: Divergen 93.8 0.05 1.1E-06 58.1 3.6 40 662-702 2-41 (149)
55 PF14228 MOR2-PAG1_mid: Cell m 90.1 6.6 0.00014 54.7 17.5 213 689-917 260-534 (1120)
56 PF08337 Plexin_cytopl: Plexin 89.0 1.3 2.9E-05 56.5 9.1 129 1062-1195 364-500 (539)
57 PF08337 Plexin_cytopl: Plexin 80.9 5.2 0.00011 51.3 8.9 130 417-551 361-498 (539)
58 PF14228 MOR2-PAG1_mid: Cell m 77.7 1.1E+02 0.0025 43.1 20.5 151 115-276 341-535 (1120)
59 KOG2023|consensus 40.0 1.2E+02 0.0026 39.8 9.2 78 996-1095 444-525 (885)
60 smart00516 SEC14 Domain in hom 37.6 40 0.00087 35.8 4.3 35 668-702 14-48 (158)
61 KOG2023|consensus 36.3 2.4E+02 0.0053 37.1 11.1 41 354-396 444-488 (885)
62 cd00170 SEC14 Sec14p-like lipi 29.0 66 0.0014 33.5 4.2 38 662-699 9-47 (157)
63 PF02985 HEAT: HEAT repeat; I 25.2 82 0.0018 24.4 3.0 29 1570-1598 1-29 (31)
64 PF03455 dDENN: dDENN domain; 24.0 66 0.0014 29.7 2.7 23 257-279 2-24 (68)
65 KOG1463|consensus 23.0 1.3E+03 0.028 28.6 13.3 177 962-1157 85-266 (411)
No 1
>KOG1826|consensus
Probab=100.00 E-value=2.8e-123 Score=1159.08 Aligned_cols=923 Identities=37% Similarity=0.466 Sum_probs=863.1
Q ss_pred hhhHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHHccccccccchhhHhHHHHHHHHHHhhcccCCCcCCCCCCCcch
Q psy14861 710 TVHAVHIKTKLYVRHIDMTVHAVHIKTKLCNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLGSANQVTIPPTPGESF 789 (1648)
Q Consensus 710 s~~~l~l~~~~y~~~l~~~~~~~rik~k~c~L~~~~~~~~~~l~~~~~~~~RN~~l~~~~~W~~~~~~~~~~~~~~~d~~ 789 (1648)
+...+.|+.+||++.||+++.++|||.|+|||+|+||++||+|+|++++++||++++++++|.+++.... ..+-.
T Consensus 956 sl~~m~Ln~vk~vrlLdi~V~~irvrskLcqL~Evmi~rredLtf~~em~f~nkl~e~L~d~vmgt~~~a-----al~~~ 1030 (2724)
T KOG1826|consen 956 SLFDLKLNNVKRVRLLDITVKFIRVRSKLCQLAEVMISRREDLTFPLEMGFVNKLFESLYDSVMGTEYLA-----ALNFH 1030 (2724)
T ss_pred hHHHHhhhhHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHhhcchhHHH-----hhhhH
Confidence 4556779999999999999999999999999999999999999999999999999999999999965432 22236
Q ss_pred hhhhchHHHHHHHHHHHHhcCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhcccchhhhhh-ccCcCccCccchh
Q psy14861 790 VSISRDLDQACMDAVAALLKGLPLQPEESDKGDLMEAKSSLFLKYFTLFMNLLNDCTDSQELDKEA-SRDRSKNDSSSNL 868 (1648)
Q Consensus 790 ~~l~rDLd~~c~kala~Ll~~LpL~p~~~~~~~~~~~ks~~F~~yF~~f~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~l 868 (1648)
++.-||||++||.|++.|+.++|+||.+++..+++++|+.+|.|||++|+++|++|.+.+..+... +++|++..++++|
T Consensus 1031 ~~~~rdlDQasme~i~~lla~lp~np~es~~v~l~~~k~~~~LkyftlfmniL~D~mdv~~kk~~~~~~~R~~ag~Lasl 1110 (2724)
T KOG1826|consen 1031 ERNIRDLDQASMENIEFLLAMLPDNPTESGSVALQRRKRNNILKYFTLFMNILLDSMDVIYKKWHTYTDFRNFAGILASL 1110 (2724)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 778899999999999999999999999999999999999999999999999999999887655533 3788889999999
Q ss_pred HHHHHHHHHHHHhccccccchhhccccccCChhhHHHHHHHHHHhccccccccchhhhHhhhhHHHHHHHHHhhhcCCch
Q psy14861 869 RSSIIEAMSNLLSANIDSGLMHSIALGYHQDLQTRAAFMEVLTKILQQGTEFNTLAETVLADRFEELVKLVTLISDKGEL 948 (1648)
Q Consensus 869 ~~~~i~alsnLl~aNid~gl~~~l~~gy~~d~~~R~aFl~v~~~il~~gt~f~~~~~~~~~~~ye~L~~Ll~~l~~~~~l 948 (1648)
|..+|+||+|+|++|||+|+.|+..+|||+|..||.+|++|++ |++||++|+.+.|++++|++|++++|++|+++.+|.
T Consensus 1111 ~~~tilamsn~L~~nids~i~~q~~~~~npdL~TR~~~~diLs-I~~~~~sFn~L~E~vlaD~~Eqii~lv~~i~dr~d~ 1189 (2724)
T KOG1826|consen 1111 SNKTILAMSNELKKNIDSFISKQCQWLNNPDLLTRENSRDILS-IELHPLSFNLLFELVLADLLEQIIKLVRTILDRDDD 1189 (2724)
T ss_pred hhcHHHHHHHHHhhhhhHHHHHhhccccCcchhhhhHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHhchHHHHHHH
Q psy14861 949 SIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLL 1028 (1648)
Q Consensus 949 ~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~Tkll~~y~r~~G~~YL~~~L 1028 (1648)
|+|++|+++++.+++|++|++++++|.++.++.++++++-..|+.-+.+.++.||+|++..|.+....+.+|.-|+.+..
T Consensus 1190 piaMaL~s~v~~~q~DeLarvlv~if~a~~~mskM~s~~e~~EV~l~i~~~~~~R~k~Lr~kid~Fk~~I~ke~d~e~Ls 1269 (2724)
T KOG1826|consen 1190 PIAMALFSTVIVDQIDELARVLVKIFKAIIQMSKMFSAMEHSEVNLGISNHFHFRNKWLRSKIDWFKFSIYKEYDFENLS 1269 (2724)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeecccceeeccchHhhhhceeEEEeehhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred HHhHHHHHhc-------CCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHH-HHhhC
Q psy14861 1029 EPLISPLLDK-------AHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQV-LSKRF 1100 (1648)
Q Consensus 1029 ~p~i~~ii~~-------~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~-v~~kF 1100 (1648)
.|..+-++.+ .+..+|.||.++++.++.+++.+++...++++++.|+.+.++.|+..|+.|++.++. +.++|
T Consensus 1270 ePlkemll~e~de~~~~~h~~~~~~p~rI~ps~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~ 1349 (2724)
T KOG1826|consen 1270 EPLKEMLLSERDELREAKHYLTEVDPLRIPPSESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRN 1349 (2724)
T ss_pred hHHHHhhhhhhhhhhhhhceeeecccccCCCCCChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccc
Confidence 9998877765 356799999999999999999999999999999999999999999999999999998 89999
Q ss_pred CCCCCccchhHHHHHHhHhhhhhccCCc----ccCCccC-CCChhhhhhhHHHHH--HHHHhhccCCCCC-ccccc-hhH
Q psy14861 1101 PLQPQNNIGAVGTVIFLRFINPAIVTPQ----EMGIINK-TVPPPVKRGLMLMSK--ILQNIANHVEFSK-EAHMI-PFN 1171 (1648)
Q Consensus 1101 P~~~e~~~~aVg~fiFLRFicPAIvsPe----~fgl~~~-~p~~~~rR~L~liaK--vLQnlAN~~~F~K-E~~m~-~lN 1171 (1648)
|.-...+...++--.+|||++|+||+|. .=|..+. ..+...-+++.+.++ |.|.++|...|++ +.+|. +++
T Consensus 1350 ~~ls~tnlg~T~v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ 1429 (2724)
T KOG1826|consen 1350 VILSLTNLGNTNVSKSLKFTLPMIVTNYNVKLGKGGLDKIKNPVLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLS 1429 (2724)
T ss_pred hhhhcccCCccchhhhhhhhccceecCCcccccccccccccCchHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9766666778888999999999999998 3333444 567889999999999 9999999999975 88888 999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcCCCccccc--chhhHHHHHHHHHHHHHHHhhhhccCccccccCCCccchHHHHH
Q psy14861 1172 DFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFI--SDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLL 1249 (1648)
Q Consensus 1172 ~fi~~~~~~~~~fl~~is~~~~~~~~~~~~~~~i--~~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~~~~~~~D~L~~lL 1249 (1648)
.|...+...-..++.+....+...+...+...++ .+.++..+|+++++|+.++++++.+.++|.+++++++++....+
T Consensus 1430 ly~rs~~n~~fi~flq~~Lkgiidn~tf~sIe~l~pgdaNve~~~~Ll~K~~~rp~q~isls~d~~a~~~~d~~k~i~~~ 1509 (2724)
T KOG1826|consen 1430 LYLRSDGNAYFIFFLQPALKGIIDNHTFFSIEKLKPGDANVEALHRLLWKYMERPGQYISLSRDHFAVGLRDICKMIYLL 1509 (2724)
T ss_pred HHHHhcccHHHHHHHHHHHcCcccccccccccccCCCcccHHHHHHHHHHhhhcchhhhhcccccccccccCcchhHHHH
Confidence 9999888776666666666677776666666777 77889999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCccccccccccccccccCCCchhHHHHHHHHhhhcchhhhhccccCeEEecCCCCCCCcEEEEEeeecCCC
Q psy14861 1250 AYLGPPEHKPVESHMFFSSYARWSSIDMSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTF 1329 (1648)
Q Consensus 1250 ~~LG~P~~~~~~~~~~~~s~~~~~~~~~~~~~~~eFM~R~~~~~~ed~~~i~~~~ify~~g~skdG~PV~v~i~r~~~~~ 1329 (1648)
+..|+|+|++.+.+....+ +|..+++.++.++++|++|..+..|+|..+++..+||+.| ++.|.|++|++.+|....
T Consensus 1510 a~rglpEH~~iad~s~v~s--~~~~i~L~S~d~E~ii~~~~lheKe~fitL~~~i~~~~~G-sen~~k~~~lvs~r~fl~ 1586 (2724)
T KOG1826|consen 1510 AYRGLPEHAPIADGSFVFS--RFKEIALVSPDSENIIREHHLHEKEEFITLAKVIQFYANG-SENGLKNFYLVSRRKFLK 1586 (2724)
T ss_pred HhhCCCCCCccCCCCccee--hcccccccCccHHHHHHHHHHhhhhHHHHHHHHHHHHHhh-hhccCcchhhHhHHHHHh
Confidence 9999999998887643333 3899999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcccccCCeEEEEEcCCCCCCCcccHHHHHH-HHHHhhHHHHhcccEEEEEcCChHHHHHHHHhhc
Q psy14861 1330 ETNADLLIYHVILTMKPFCHAPYELVIDFTHASSENRFKTEFLQK-WFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEK 1408 (1648)
Q Consensus 1330 ~~D~e~LiY~vl~tl~~~~~~~f~lV~D~T~f~~~n~p~~~~l~~-~~~llP~~~~kNl~~iYi~Npn~~~r~~~k~~~~ 1408 (1648)
.+.-+.|+|+...++++.++.+++++.|.|....++.+-.+++.+ |+.+.|..+..|-.++|.+|+|.|.|.+++.+++
T Consensus 1587 ~~s~~il~~l~~L~~kp~~hf~~evreD~T~~~~d~sfltsf~~~~~f~vr~~va~e~~~a~~di~~n~~lK~~~~l~dr 1666 (2724)
T KOG1826|consen 1587 ECSDDILIFLVELCLKPKVHFPGEVREDPTPIEFDYSFLTSFLYLKWFKVRPHVANENKHAVGDINCNSFLKETTKLHDR 1666 (2724)
T ss_pred hcCcHHHHHHHHHHcCccccCcceeeecCCcCCccHHHHHHHHhhhheeechhhhhhcccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888877 9999999999999999999999999999999999
Q ss_pred cccccccCCceEEEcCChhhhhhcCCCCCcccCccccccccccccccccceeeccccceEEEEcCeEEEEeeceeeeccc
Q psy14861 1409 ILLPIFRNNKKLIFLDSPSKLNDYIDHNQQKLPGATLALDEDLKVFNNGLKLSHKDTKVAIKVGPTAVQITSLEKTKVLS 1488 (1648)
Q Consensus 1409 ~~s~~~k~~~ki~fi~sl~eL~~~i~~~~l~LP~~tl~l~~d~~v~~~~~~l~~~~~pV~lkIG~~~~qi~~~~~~~~~~ 1488 (1648)
++.++ |++++..|.+.+-.|.+|++-++..+|..|+..++|++| .++.+++++++.|++|||...+|+|+.++.++++
T Consensus 1667 iL~~L-~~~k~~~f~e~P~kl~e~id~~~q~~~~~t~~~~edlkv-snalk~s~~etkvsi~ig~~alt~Tnae~tkvl~ 1744 (2724)
T KOG1826|consen 1667 ILGQL-GQPKMEFFNEIPIKLREHIDDYPQLYEFMTRHAFEDLKV-SNALKPSVHETKVSIGIGIIALTMTNAEDTKVLI 1744 (2724)
T ss_pred HHhhc-CCCceeehhcCCHHHHHHHhhhhhhhhHHHHHHHhhccc-cccccchhhhhhhhcccCceEEEEeccccccchh
Confidence 99998 999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cceeeeeEEEcccceeeccccCCceEEEEecCCcceEEEEecccHHHHHHHHHHHHHhhcccCCCcccccccCCCCCchH
Q psy14861 1489 HSVLLNDIYYAHEIEEVCLVDDNQFTLSFVKDSQTQVLSFIHNECDSIVQAIIHIRNRWELSQSDSLTVHQKIRPKDVPG 1568 (1648)
Q Consensus 1489 ~~~~~ndV~~~sdi~~v~~~~~~eF~l~~~~~~~~~~l~f~S~~~~eIvk~i~~~~~r~~~~~~~~~~~~~~~rp~dvpg 1568 (1648)
+++.+||+|..++|+++|+.|+++||+.+.|.++ .++|.+..|.+|+|++-+.+.||+.+||.+...+.++||+||||
T Consensus 1745 ~Sv~~kdl~~~aeik~~cliD~tqFtl~ian~~~--~ls~~h~~c~~i~qs~~h~~~~~~vnqp~~~~~h~kirpknv~g 1822 (2724)
T KOG1826|consen 1745 DSVAYKDLQIYAEIKHCCLIDCTQFTLGIANMRK--FLSLVHGLCPEIAQSNCHGCYYFNVNQPFMDNYHKKIRPKNVYG 1822 (2724)
T ss_pred hhHHHHHHHHHhhcceEEEEEcCeeeeccccccc--hhHHHHhhhHHHhhhheeeeeeEecCCccccchhhccCcCCCcc
Confidence 9999999999999999999999999999999988 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHHHhhccCCCCcccccCCCC---CCCchHHHHhhHHHhhhccccChHHHHHHHh
Q psy14861 1569 TLLNMALLNLGSVDPNLRTAAYNLLCALTATFDLKIEGQLLETSDM---SNNNFEELMMKRNMQEKEEFKSIKSLNIFYQ 1645 (1648)
Q Consensus 1569 tLLn~allnL~s~d~~lR~aaYNLL~al~~~F~l~~~~~l~~~~~l---~n~t~fi~~is~~~a~~~~~~~~~~~~~~~~ 1645 (1648)
|+||+|++|+||+||.||.|||||+|||+.+|++.+++|++++.|+ .||+.|+..+|+.||+.||-+...++.--|+
T Consensus 1823 tll~~al~~~~nsDpsLrksa~nl~caLt~~fdlrve~~~i~~~~lcip~~n~v~lk~~~q~L~~n~ph~~leflee~~s 1902 (2724)
T KOG1826|consen 1823 TLLIPALFINSNSDPSLRKSAGNLGCALTVLFDLRVELHDITLYDLCIPRFNPVSLKIYFQVLHENPPHYKLEFLEELFS 1902 (2724)
T ss_pred hhhhHHHHhcCCCCHHHHHHHHhhcchheeeeeeeEeeeeeeeccccccCCCceeehhHHHHHhcCCCcceeehhhhhhh
Confidence 9999999999999999999999999999999999999999999999 9999999999999999999988887776554
No 2
>KOG1826|consensus
Probab=100.00 E-value=6.5e-88 Score=842.66 Aligned_cols=1024 Identities=26% Similarity=0.292 Sum_probs=824.3
Q ss_pred ccccccchhHHhHHHHHHHHHhhccCCCcccCCCCCCCchhhhcccHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHH
Q psy14861 108 NTLAFRREMSFRNKLVDYLMDWVLGSANQVTIPPTPGESFVSISRDLDQACMDAVAALLKGLPLQPEESDKGDLMEAKSS 187 (1648)
Q Consensus 108 ~~l~~~~~~~~rn~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~rdld~~~~~al~~ll~~lpL~p~~~~~~~~~~~ks~ 187 (1648)
|.|+|+++|++||++++++++|++++.+.. ..+...+.-||||++||.|++.|+.++|+||++++..+++++|+.
T Consensus 996 edLtf~~em~f~nkl~e~L~d~vmgt~~~a-----al~~~~~~~rdlDQasme~i~~lla~lp~np~es~~v~l~~~k~~ 1070 (2724)
T KOG1826|consen 996 EDLTFPLEMGFVNKLFESLYDSVMGTEYLA-----ALNFHERNIRDLDQASMENIEFLLAMLPDNPTESGSVALQRRKRN 1070 (2724)
T ss_pred hhchhHHHHHHHHHHHHHHHHhhcchhHHH-----hhhhHHHHhhhHHHHHHHHHHHHHhcCCCCCCcCccHHHHHHHHH
Confidence 899999999999999999999999864332 123456788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccc-chhcccccccCCCcchhHHHHHHHHHHHHhhhhchhhhhhhcccccCChhhhHHHHH
Q psy14861 188 LFLKYFTLFMNLLNDCTDSQEL-DKEASRDRSKNDSSSNLRSSIIEAMSNLLSANIDSGLMHSIALGYRQDLQTRAAFME 266 (1648)
Q Consensus 188 ~F~~yF~~f~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~alsnLl~aN~d~gl~~~l~~gy~~d~~~R~aFl~ 266 (1648)
+|.||||+|+++|++|.|.... ....++-|...+..+.|+..+|.||+|+|++|||+|+.|+...|||+|..||.+|++
T Consensus 1071 ~~LkyftlfmniL~D~mdv~~kk~~~~~~~R~~ag~Lasl~~~tilamsn~L~~nids~i~~q~~~~~npdL~TR~~~~d 1150 (2724)
T KOG1826|consen 1071 NILKYFTLFMNILLDSMDVIYKKWHTYTDFRNFAGILASLSNKTILAMSNELKKNIDSFISKQCQWLNNPDLLTRENSRD 1150 (2724)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhcHHHHHHHHHhhhhhHHHHHhhccccCcchhhhhHHHH
Confidence 9999999999999999987533 333445666677788999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccchhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHH
Q psy14861 267 VLTKILQQGTEFNTLAETVLADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMF 346 (1648)
Q Consensus 267 v~~~il~~g~~~~~l~~~~~~~~ye~l~~Ll~~~~~~~~l~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li 346 (1648)
|++ |++||++|+.++|++.+|++|++++|++++.|.+++++||+|+++++.+++|++|++++++|.+.+...++++++.
T Consensus 1151 iLs-I~~~~~sFn~L~E~vlaD~~Eqii~lv~~i~dr~d~piaMaL~s~v~~~q~DeLarvlv~if~a~~~mskM~s~~e 1229 (2724)
T KOG1826|consen 1151 ILS-IELHPLSFNLLFELVLADLLEQIIKLVRTILDRDDDPIAMALFSTVIVDQIDELARVLVKIFKAIIQMSKMFSAME 1229 (2724)
T ss_pred HHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCcccccccCchhHHHHHHHHHHhhHHHHHHHHHHhHHHHhcc-------CCCccccCCCCCCChhhHHHHHH
Q psy14861 347 YREVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDK-------AHVAFEVDPARLDPSENIENNRR 419 (1648)
Q Consensus 347 ~~EI~~t~~~~tLfR~NS~~tkll~~y~r~~G~~YL~~~L~p~i~~Ii~~-------~~~~~EiDP~ki~~~e~ie~n~~ 419 (1648)
..|++-+.+.++.||+|++..|.+....+..|.-|+.+...|+.+-++.+ .+..+|.||.+|.|.++.+++.+
T Consensus 1230 ~~EV~l~i~~~~~~R~k~Lr~kid~Fk~~I~ke~d~e~LsePlkemll~e~de~~~~~h~~~~~~p~rI~ps~s~ee~~r 1309 (2724)
T KOG1826|consen 1230 HSEVNLGISNHFHFRNKWLRSKIDWFKFSIYKEYDFENLSEPLKEMLLSERDELREAKHYLTEVDPLRIPPSESTEEYIR 1309 (2724)
T ss_pred hhheeeecccceeeccchHhhhhceeEEEeehhhhHHHHhhHHHHhhhhhhhhhhhhhceeeecccccCCCCCChHHHHH
Confidence 99999999999999999999999887788899999999999998877665 45689999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHH-HHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChh
Q psy14861 420 ELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQV-LSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPP 498 (1648)
Q Consensus 420 ~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~-v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~ 498 (1648)
++...++++++.|+++.++.|+..|+.|+..++. +..+||.........++.-.+|||++|+||+|..-.+-...
T Consensus 1310 ~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmIVtny~v~~gk~g---- 1385 (2724)
T KOG1826|consen 1310 SLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMIVTNYNVKLGKGG---- 1385 (2724)
T ss_pred HHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhhhhhhhccceecCCcccccccc----
Confidence 9999999999999999999999999999999998 89999977666778889999999999996655421110000
Q ss_pred hhhhhHHHHHHhHHhhcccccCccccCcchHHHHHHhHHHHHHHHHHhhcCCCCcCCCCCCCcccChHHHHHHHHHHHHH
Q psy14861 499 VKRGLMLMSKILQNIANHVEFSKEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNH 578 (1648)
Q Consensus 499 ~rR~L~lIaKvLQnlAN~~~f~KE~~m~~lN~fi~~~~~~~~~fl~~i~~~~~~e~~~~~~~~~is~~ei~~LHr~L~~~ 578 (1648)
+. |
T Consensus 1386 -------Ld-------------K--------------------------------------------------------- 1388 (2724)
T KOG1826|consen 1386 -------LD-------------K--------------------------------------------------------- 1388 (2724)
T ss_pred -------cc-------------c---------------------------------------------------------
Confidence 00 0
Q ss_pred HHHHhhhhccCccccccCCCCcchHHHHHhhcCCCCCCCccccccccccccccccCCCCcchHHHHHHhcchhhhhhhcc
Q psy14861 579 QEKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEHKPVESHMFFSSYARWSSIDMSNNNFEELMMKRNMQEKEEFKSI 658 (1648)
Q Consensus 579 ~~~I~~~L~~~~~~~~~~~~~fD~l~~lL~~LG~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~efm~r~~~~~~~~~~~i 658 (1648)
|. .|.. +|.
T Consensus 1389 ---Ik----------------------------np~~--------------------------------------sf~-- 1397 (2724)
T KOG1826|consen 1389 ---IK----------------------------NPVL--------------------------------------SFF-- 1397 (2724)
T ss_pred ---cc----------------------------CchH--------------------------------------hhh--
Confidence 00 0000 000
Q ss_pred ccccceeccCccCCCCcEEEEEeccccccCCchHHHHHHHHHHhhhhhccchhhHHHHHHHHhhcccCCcchhhHHHHHH
Q psy14861 659 KSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTMYVRHIDMTVHAVHIKTKLYVRHIDMTVHAVHIKTKL 738 (1648)
Q Consensus 659 ~~~~~f~~~~~s~~g~pV~~~i~rr~~~~~~d~e~LvY~il~tl~~~~iD~s~~~l~l~~~~y~~~l~~~~~~~rik~k~ 738 (1648)
..++ |.|
T Consensus 1398 ---Gl~l-------~sp--------------------------------------------------------------- 1404 (2724)
T KOG1826|consen 1398 ---GLEL-------CSP--------------------------------------------------------------- 1404 (2724)
T ss_pred ---hhhh-------CCH---------------------------------------------------------------
Confidence 0000 000
Q ss_pred HHHHHHHHccccccccchhhHhHHHHHHHHHHhhcccCCCcCCCCCCCcchhhhhchHHHHHHHHHHHHhcCCCCCCCCC
Q psy14861 739 CNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLGSANQVTIPPTPGESFVSISRDLDQACMDAVAALLKGLPLQPEES 818 (1648)
Q Consensus 739 c~L~~~~~~~~~~l~~~~~~~~RN~~l~~~~~W~~~~~~~~~~~~~~~d~~~~l~rDLd~~c~kala~Ll~~LpL~p~~~ 818 (1648)
T Consensus 1405 -------------------------------------------------------------------------------- 1404 (2724)
T KOG1826|consen 1405 -------------------------------------------------------------------------------- 1404 (2724)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhhhhHHHHHHHHHHHHHHHhhhhhcccchhhhhhccCcCccCccchhHHHHHHHHHHHHhccccccchhhccccccC
Q psy14861 819 DKGDLMEAKSSLFLKYFTLFMNLLNDCTDSQELDKEASRDRSKNDSSSNLRSSIIEAMSNLLSANIDSGLMHSIALGYHQ 898 (1648)
Q Consensus 819 ~~~~~~~~ks~~F~~yF~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~alsnLl~aNid~gl~~~l~~gy~~ 898 (1648)
T Consensus 1405 -------------------------------------------------------------------------------- 1404 (2724)
T KOG1826|consen 1405 -------------------------------------------------------------------------------- 1404 (2724)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHHHHHHHHhccccccccchhhhHhhhhHHHHHHHHHhhhcCCchHHHHHHHhhcCchhHHHHHHHHHHhhccCC
Q psy14861 899 DLQTRAAFMEVLTKILQQGTEFNTLAETVLADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKH 978 (1648)
Q Consensus 899 d~~~R~aFl~v~~~il~~gt~f~~~~~~~~~~~ye~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~ 978 (1648)
|
T Consensus 1405 --------------~----------------------------------------------------------------- 1405 (2724)
T KOG1826|consen 1405 --------------I----------------------------------------------------------------- 1405 (2724)
T ss_pred --------------H-----------------------------------------------------------------
Confidence 0
Q ss_pred cHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCCh-hhHH
Q psy14861 979 MLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPS-ENIE 1057 (1648)
Q Consensus 979 ~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~Tkll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~-e~~~ 1057 (1648)
++..++..||+.+.. .+++| |.+..|.|..|..|+...++|.++.++++ +..++++ ++.++ .+.+
T Consensus 1406 ----~v~qli~N~ik~t~r-sdilr------~s~~ly~rs~~n~~fi~flq~~Lkgiidn-~tf~sIe--~l~pgdaNve 1471 (2724)
T KOG1826|consen 1406 ----YVLQLIKNEIKFTKR-SDILR------RSLSLYLRSDGNAYFIFFLQPALKGIIDN-HTFFSIE--KLKPGDANVE 1471 (2724)
T ss_pred ----HHHHHHHHHHhhhhH-HHHHH------HHHHHHHHhcccHHHHHHHHHHHcCcccc-ccccccc--ccCCCcccHH
Confidence 011122334444433 44555 66778888899999999999999999996 8899999 55443 4566
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCC
Q psy14861 1058 NNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTV 1137 (1648)
Q Consensus 1058 ~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p 1137 (1648)
.-..-++++.++..+.|..+.+.+|.++|.+|+-++......+| |.+..+.|+|+|+||+|||+++|+...++..+
T Consensus 1472 ~~~~Ll~K~~~rp~q~isls~d~~a~~~~d~~k~i~~~a~rglp---EH~~iad~s~v~s~~~~i~L~S~d~E~ii~~~- 1547 (2724)
T KOG1826|consen 1472 ALHRLLWKYMERPGQYISLSRDHFAVGLRDICKMIYLLAYRGLP---EHAPIADGSFVFSRFKEIALVSPDSENIIREH- 1547 (2724)
T ss_pred HHHHHHHHhhhcchhhhhcccccccccccCcchhHHHHHhhCCC---CCCccCCCCcceehcccccccCccHHHHHHHH-
Confidence 66778899999999999999999999999999999999999999 68889999999999999999999999998654
Q ss_pred ChhhhhhhHHHHHHHHHhhccCCC-CCccccchhHHHHHHHHHHHHHHHHHhhcCCCC--C-CcCCCcccccchhhHHHH
Q psy14861 1138 PPPVKRGLMLMSKILQNIANHVEF-SKEAHMIPFNDFLRAHFVIARQFFIQIASDCVT--E-DAGAHSMSFISDTNVLAL 1213 (1648)
Q Consensus 1138 ~~~~rR~L~liaKvLQnlAN~~~F-~KE~~m~~lN~fi~~~~~~~~~fl~~is~~~~~--~-~~~~~~~~~i~~~~i~~L 1213 (1648)
.-..|+...-++|++|..+||.+- .|..|+..=-.|+.+..+++-.|+-.++-.+-. + +....|+. +..+..++
T Consensus 1548 ~lheKe~fitL~~~i~~~~~Gsen~~k~~~lvs~r~fl~~~s~~il~~l~~L~~kp~~hf~~evreD~T~--~~~d~sfl 1625 (2724)
T KOG1826|consen 1548 HLHEKEEFITLAKVIQFYANGSENGLKNFYLVSRRKFLKECSDDILIFLVELCLKPKVHFPGEVREDPTP--IEFDYSFL 1625 (2724)
T ss_pred HHhhhhHHHHHHHHHHHHHhhhhccCcchhhHhHHHHHhhcCcHHHHHHHHHHcCccccCcceeeecCCc--CCccHHHH
Confidence 667899999999999999999654 377777777789999999888888887654321 1 11111111 12467899
Q ss_pred HHHHHHHHHHHhhhhccCccccccCCCc-cc------hH-HHHHhhcCCCCCCCccccccccccccccccCCC-chhHHH
Q psy14861 1214 HRLLYNHQEKIGDYLSSSRDHKVVGRRP-FD------KM-ATLLAYLGPPEHKPVESHMFFSSYARWSSIDMS-NNNFEE 1284 (1648)
Q Consensus 1214 Hr~L~~~~~~I~~~l~s~~~~~~~~~~~-~D------~L-~~lL~~LG~P~~~~~~~~~~~~s~~~~~~~~~~-~~~~~e 1284 (1648)
|+|++.++-++++..+..+.| ++|.-. .+ .+ ..+|++||+|++.-..+. +.+..++++ +|+.++
T Consensus 1626 tsf~~~~~f~vr~~va~e~~~-a~~di~~n~~lK~~~~l~driL~~L~~~k~~~f~e~------P~kl~e~id~~~q~~~ 1698 (2724)
T KOG1826|consen 1626 TSFLYLKWFKVRPHVANENKH-AVGDINCNSFLKETTKLHDRILGQLGQPKMEFFNEI------PIKLREHIDDYPQLYE 1698 (2724)
T ss_pred HHHHhhhheeechhhhhhccc-ccccccchHHHHHHHHHHHHHHhhcCCCceeehhcC------CHHHHHHHhhhhhhhh
Confidence 999999998888655544333 222110 11 12 469999999996533322 334455665 899999
Q ss_pred HHHHHhhhcchhhhhccccCeEEecCCCCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHhcccccCCeEEEEEcCCCCCC
Q psy14861 1285 LMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTMKPFCHAPYELVIDFTHASSE 1364 (1648)
Q Consensus 1285 FM~R~~~~~~ed~~~i~~~~ify~~g~skdG~PV~v~i~r~~~~~~~D~e~LiY~vl~tl~~~~~~~f~lV~D~T~f~~~ 1364 (1648)
||.|+++++.+. -...+.++++.+..+|.+++++.+.+......+++.++|..++.+. ..++| .++|||.|+..
T Consensus 1699 ~~t~~~~edlkv---snalk~s~~etkvsi~ig~~alt~Tnae~tkvl~~Sv~~kdl~~~a--eik~~-cliD~tqFtl~ 1772 (2724)
T KOG1826|consen 1699 FMTRHAFEDLKV---SNALKPSVHETKVSIGIGIIALTMTNAEDTKVLIDSVAYKDLQIYA--EIKHC-CLIDCTQFTLG 1772 (2724)
T ss_pred HHHHHHHhhccc---cccccchhhhhhhhcccCceEEEEeccccccchhhhHHHHHHHHHh--hcceE-EEEEcCeeeec
Confidence 999999875432 2234679999999999999999999998888999999999999988 67888 89999999988
Q ss_pred CcccHHHHHHHHHHhhHHHHhcccEEEEEcCCh-HHHHHHHHhhccccccccCCceEEEcCChhhhhhcCCCCCcccCcc
Q psy14861 1365 NRFKTEFLQKWFYVLSEVAYANIHAAYIYNCNS-WVREYTKYHEKILLPIFRNNKKLIFLDSPSKLNDYIDHNQQKLPGA 1443 (1648)
Q Consensus 1365 n~p~~~~l~~~~~llP~~~~kNl~~iYi~Npn~-~~r~~~k~~~~~~s~~~k~~~ki~fi~sl~eL~~~i~~~~l~LP~~ 1443 (1648)
-....+.+..+.+++|..+.+||++.|++|.|. +.-.|.+..++ -.++.....+..|+++.+|-.- .+..+.-+.
T Consensus 1773 ian~~~~ls~~h~~c~~i~qs~~h~~~~~~vnqp~~~~~h~kirp-knv~gtll~~al~~~~nsDpsL---rksa~nl~c 1848 (2724)
T KOG1826|consen 1773 IANMRKFLSLVHGLCPEIAQSNCHGCYYFNVNQPFMDNYHKKIRP-KNVYGTLLIPALFINSNSDPSL---RKSAGNLGC 1848 (2724)
T ss_pred cccccchhHHHHhhhHHHhhhheeeeeeEecCCccccchhhccCc-CCCcchhhhHHHHhcCCCCHHH---HHHHHhhcc
Confidence 777788999999999999999999999999995 33333333332 1111011234456777666321 133577788
Q ss_pred ccccccccccccccceeec----cccceEEEEcCeEEEEeec----eeeeccc--cceeeeeEEEcccceeeccc----c
Q psy14861 1444 TLALDEDLKVFNNGLKLSH----KDTKVAIKVGPTAVQITSL----EKTKVLS--HSVLLNDIYYAHEIEEVCLV----D 1509 (1648)
Q Consensus 1444 tl~l~~d~~v~~~~~~l~~----~~~pV~lkIG~~~~qi~~~----~~~~~~~--~~~~~ndV~~~sdi~~v~~~----~ 1509 (1648)
.+++..|+||-.|++.+|+ .+.||.||| |+|++++ .|.++++ .+.++|+||+|+-+-.++++ .
T Consensus 1849 aLt~~fdlrve~~~i~~~~lcip~~n~v~lk~---~~q~L~~n~ph~~leflee~~sg~~~s~~eishLcl~yvspw~~~ 1925 (2724)
T KOG1826|consen 1849 ALTVLFDLRVELHDITLYDLCIPRFNPVSLKI---YFQVLHENPPHYKLEFLEELFSGKFNSVYEISHLCLVYVSPWTGV 1925 (2724)
T ss_pred hheeeeeeeEeeeeeeeccccccCCCceeehh---HHHHHhcCCCcceeehhhhhhhhhhhhHHHHHHHHHHHhchhhHh
Confidence 8999999999999999987 568999999 9999998 3444554 58999999999999888775 5
Q ss_pred CCceEEEEecCCcceEEEEecccHHHHHHHHHHHHHhhcccC----CC---cccc----cccCCCCCchHHHHHHHHhcC
Q psy14861 1510 DNQFTLSFVKDSQTQVLSFIHNECDSIVQAIIHIRNRWELSQ----SD---SLTV----HQKIRPKDVPGTLLNMALLNL 1578 (1648)
Q Consensus 1510 ~~eF~l~~~~~~~~~~l~f~S~~~~eIvk~i~~~~~r~~~~~----~~---~~~~----~~~~rp~dvpgtLLn~allnL 1578 (1648)
-.|||...+|++. +.|+||++.+|+++|.+++-+-+... +. +... +....-.-...|+..||+++|
T Consensus 1926 lveF~ksndd~kr---l~~ss~~~~~I~~~~~~~qmype~qaki~gs~~~~~~vlnnf~~~s~~~glgs~~lelva~t~l 2002 (2724)
T KOG1826|consen 1926 LVEFTKSNDDEKR---LIFSSPKYLEIVKMFYYAQMYPESQAKIDGSSSTSSPVLNNFVKQSKERGLGSCHLELVALTGL 2002 (2724)
T ss_pred HHHHHhccCchhh---eeecchHHHHHHHHHHHHHhChHhhhcccCccchhhHHHHHHHHhhhhccccchhhHHHHHHHH
Confidence 7789999998887 99999999999999999887755321 11 0111 122222345669999999999
Q ss_pred CCCChhHHHHHHHHHHHHHhhccCCCCcccccCCCC---CCCchHHHHhhHHHhhhccccChHHHHHHHh
Q psy14861 1579 GSVDPNLRTAAYNLLCALTATFDLKIEGQLLETSDM---SNNNFEELMMKRNMQEKEEFKSIKSLNIFYQ 1645 (1648)
Q Consensus 1579 ~s~d~~lR~aaYNLL~al~~~F~l~~~~~l~~~~~l---~n~t~fi~~is~~~a~~~~~~~~~~~~~~~~ 1645 (1648)
+-++..+++.||||++|+|++|++++ .+++.++|- -+.+.|--.|-.-|+...|-+-+-.+.--|.
T Consensus 2003 ~l~s~nvk~vS~nlI~~~c~~~d~~~-t~p~~s~Eq~v~wD~~t~L~r~~~mlS~sn~~~~a~~~pYl~h 2071 (2724)
T KOG1826|consen 2003 FLESKNVKNVSYNLIAATCASFDLNF-THPHRSPEQYVPWDTTTFLGRIGKMLSESNPELTAYMFPYLLH 2071 (2724)
T ss_pred hhcccchhhhHHHHHHHHHHHhcccc-CCCCCCHhHhCCcccHHHHHHHHHHHcccChhhHHHHHHHHHh
Confidence 99999999999999999999999999 999999998 6667777789999999988877766654443
No 3
>cd05130 RasGAP_Neurofibromin Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2. Neurofibromin has been shown to function as a GAP (GTPase-activating protein) which inhibits low molecular weight G proteins such as Ras by stimulating their intrinsic GTPase activity. NF1 is a common genetic disorder characterized by various symptoms ranging from predisposition for the development of tumors to learning disability or mental retardation. Loss of neurofibromin activity can be correlated to the increase in Ras-GTP concentration in neurofibromas of NF1 of patients, supporting the notion that unregulated Ras signaling may contribute to their development.
Probab=100.00 E-value=3.3e-70 Score=640.79 Aligned_cols=326 Identities=69% Similarity=1.135 Sum_probs=317.1
Q ss_pred hhHHHHHHHHHhhhcCCchHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCchhH
Q psy14861 930 DRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGS 1009 (1648)
Q Consensus 930 ~~ye~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~T 1009 (1648)
||||+|++|++|+++++++++|.|||++||++|+|++|.+|+++|++++++++|++.++++||+.+++++++|||||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~al~~v~~~~e~d~la~~lv~lf~~~~~l~~ll~~~i~~Ev~~~~~~~~lfRgNs~~t 80 (329)
T cd05130 1 DRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRGNSLAS 80 (329)
T ss_pred CcHHHHHHHHHHhccCccchHHHHHHHhCCHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCHhHHHhcCcHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchHHHHHHHHHhHHHHHhcCCC---ccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHH
Q psy14861 1010 KLMAFCFKIYGASYLQNLLEPLISPLLDKAHV---AFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLR 1086 (1648)
Q Consensus 1010 kll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~---~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR 1086 (1648)
|+++.|+|..|++||+++|+|+|++|+++++. ++|+||.++++++++++|+++|+.++++||++|++|+++||+++|
T Consensus 81 Kl~~~y~k~~G~~yL~~~L~pvI~~ii~~~~~~~~~~EvDP~k~~~~e~l~~n~~~L~~~~~~fl~~I~~S~~~~P~~lR 160 (329)
T cd05130 81 KIMTFCFKVYGATYLQKLLEPLLREVITSPEWQHFEFEVDPTRLEPTENLEENQRNLLQLTEKFFHAIINSSSEFPPQLR 160 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCcChhhcCChhhHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHH
Confidence 99999999999999999999999999987543 589999999998999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCCCCccc
Q psy14861 1087 SMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFSKEAH 1166 (1648)
Q Consensus 1087 ~Ic~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F~KE~~ 1166 (1648)
+||++|++.+.+|||++.+..+.+||||+|||||||||++|+.||+++..|++++||+|++|||||||+||++.|+||+|
T Consensus 161 ~i~~~l~~~v~~kFP~~~~~~~~~Vg~fiFLRfi~PAIvsP~~f~l~~~~p~~~~rR~L~lIAKvLQnlAN~~~F~KE~~ 240 (329)
T cd05130 161 SVCHCLYQVVSQRFPNKAQNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPRIERGLKLMSKILQSIANHVLFTKEEH 240 (329)
T ss_pred HHHHHHHHHHHHHCCCcccchHHHHHHHHHHHHhhhhhCCccccCCCCCCCCHHHHhHHHHHHHHHHHHhccCccCCcHH
Confidence 99999999999999988777789999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCcccccchhhHHHHHHHHHHHHHHHhhhhccCccccccCCCccchHH
Q psy14861 1167 MIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMA 1246 (1648)
Q Consensus 1167 m~~lN~fi~~~~~~~~~fl~~is~~~~~~~~~~~~~~~i~~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~~~~~~~D~L~ 1246 (1648)
|.|+|+|+.++.+++++|+.+++++++..|+..+|..+|+.+|+..+|++|++|+++|+++|+|+|+|+++|++++|+|+
T Consensus 241 M~~lN~fi~~~~~~~~~Fl~~i~~~~~~~d~~~~p~~yis~~ei~~lH~ll~~h~~~i~~~l~s~~~~~~~~~~~~~~~~ 320 (329)
T cd05130 241 MRPFNDFVKSNFDAARRFFLDIASDCPTSDNVNHSLSFISDGNVLALHRLLWNNQEKIGQYLSSNRDHKAVGRRPFDKMA 320 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCccccCCCceeccHHHHHHHHHHHHHHHHHHHHHHhccccccccChhHHHHHH
Confidence 99999999999999999999999988888888899999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCC
Q psy14861 1247 TLLAYLGPP 1255 (1648)
Q Consensus 1247 ~lL~~LG~P 1255 (1648)
++|++||||
T Consensus 321 ~~l~~~g~p 329 (329)
T cd05130 321 TLLAYLGPP 329 (329)
T ss_pred HHHHHcCCC
Confidence 999999998
No 4
>cd05130 RasGAP_Neurofibromin Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2. Neurofibromin has been shown to function as a GAP (GTPase-activating protein) which inhibits low molecular weight G proteins such as Ras by stimulating their intrinsic GTPase activity. NF1 is a common genetic disorder characterized by various symptoms ranging from predisposition for the development of tumors to learning disability or mental retardation. Loss of neurofibromin activity can be correlated to the increase in Ras-GTP concentration in neurofibromas of NF1 of patients, supporting the notion that unregulated Ras signaling may contribute to their development.
Probab=100.00 E-value=1.2e-69 Score=636.09 Aligned_cols=326 Identities=69% Similarity=1.135 Sum_probs=316.2
Q ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccCCcccccccCchhH
Q psy14861 288 DRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGS 367 (1648)
Q Consensus 288 ~~ye~l~~Ll~~~~~~~~l~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~~~~tLfR~NS~~t 367 (1648)
||||+|++|+++++|+|++++|.||+++||..|+|++|++++++|++++.+.++++.++++||+.+++++++|||||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~al~~v~~~~e~d~la~~lv~lf~~~~~l~~ll~~~i~~Ev~~~~~~~~lfRgNs~~t 80 (329)
T cd05130 1 DRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRGNSLAS 80 (329)
T ss_pred CcHHHHHHHHHHhccCccchHHHHHHHhCCHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCHhHHHhcCcHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHhccCCC---ccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHH
Q psy14861 368 KLMAFCFKIYGASYLQNLLEPLISPLLDKAHV---AFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLR 444 (1648)
Q Consensus 368 kll~~y~r~~G~~YL~~~L~p~i~~Ii~~~~~---~~EiDP~ki~~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR 444 (1648)
|+++.|+|..|++||+++|+|+|++|+++++. ++|+||.++.+++++++|+++|+.++++|+++|++|++.||+++|
T Consensus 81 Kl~~~y~k~~G~~yL~~~L~pvI~~ii~~~~~~~~~~EvDP~k~~~~e~l~~n~~~L~~~~~~fl~~I~~S~~~~P~~lR 160 (329)
T cd05130 81 KIMTFCFKVYGATYLQKLLEPLLREVITSPEWQHFEFEVDPTRLEPTENLEENQRNLLQLTEKFFHAIINSSSEFPPQLR 160 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCcChhhcCChhhHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHH
Confidence 99999999999999999999999999987653 589999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccccCcccc
Q psy14861 445 SMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFSKEAH 524 (1648)
Q Consensus 445 ~Ic~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f~KE~~ 524 (1648)
+||++|++.+.+|||+.++..+.+||||+|||||||||++|+.||+++..|++++||+|++|||||||+||++.|+||+|
T Consensus 161 ~i~~~l~~~v~~kFP~~~~~~~~~Vg~fiFLRfi~PAIvsP~~f~l~~~~p~~~~rR~L~lIAKvLQnlAN~~~F~KE~~ 240 (329)
T cd05130 161 SVCHCLYQVVSQRFPNKAQNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPRIERGLKLMSKILQSIANHVLFTKEEH 240 (329)
T ss_pred HHHHHHHHHHHHHCCCcccchHHHHHHHHHHHHhhhhhCCccccCCCCCCCCHHHHhHHHHHHHHHHHHhccCccCCcHH
Confidence 99999999999999998877789999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHhHHHHHHHHHHhhcCCCCcCCCCCCCcccChHHHHHHHHHHHHHHHHHhhhhccCccccccCCCCcchHH
Q psy14861 525 MIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMA 604 (1648)
Q Consensus 525 m~~lN~fi~~~~~~~~~fl~~i~~~~~~e~~~~~~~~~is~~ei~~LHr~L~~~~~~I~~~L~~~~~~~~~~~~~fD~l~ 604 (1648)
|+|+|+|+.++.+++++||.+++++++..+...+|++||+++|++.+|++|++|+++|+++|+++++++++||++||+|+
T Consensus 241 M~~lN~fi~~~~~~~~~Fl~~i~~~~~~~d~~~~p~~yis~~ei~~lH~ll~~h~~~i~~~l~s~~~~~~~~~~~~~~~~ 320 (329)
T cd05130 241 MRPFNDFVKSNFDAARRFFLDIASDCPTSDNVNHSLSFISDGNVLALHRLLWNNQEKIGQYLSSNRDHKAVGRRPFDKMA 320 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCccccCCCceeccHHHHHHHHHHHHHHHHHHHHHHhccccccccChhHHHHHH
Confidence 99999999999999999999999888777777789999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCC
Q psy14861 605 TLLAYLGPP 613 (1648)
Q Consensus 605 ~lL~~LG~P 613 (1648)
++|++||+|
T Consensus 321 ~~l~~~g~p 329 (329)
T cd05130 321 TLLAYLGPP 329 (329)
T ss_pred HHHHHcCCC
Confidence 999999998
No 5
>cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP. Once the Ras regulator p120GAP, a member of the GAP protein family, is recruited to the membrane, it is transiently immobilized to interact with Ras-GTP. The down regulation of Ras by p120GAP is a critical step in the regulation of many cellular processes, which is disrupted in approximately 30% of human cancers. p120GAP contains SH2, SH3, PH, calcium- and lipid-binding domains, suggesting its involvement in a complex network of cellular interactions in vivo.
Probab=100.00 E-value=1.1e-58 Score=539.73 Aligned_cols=290 Identities=27% Similarity=0.450 Sum_probs=270.1
Q ss_pred hhHHHHHHHHHhhhcCCchHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCchhH
Q psy14861 930 DRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGS 1009 (1648)
Q Consensus 930 ~~ye~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~T 1009 (1648)
++|++|.+|+. +++++++.|||++|| +|+|++|..|+++|+++++...|++.++++||+.+.+.++||||||+||
T Consensus 1 ~~y~~l~~ll~----~~~~~~~~al~~vc~-~d~~~la~~Lv~vF~~~~~~~~ll~~Li~~EI~~~~~~~tLFR~NSlaT 75 (315)
T cd05391 1 EEYSEFKELIL----QKELHVVYALSHVCG-QDRTLLASILLRIFLHEKLESLLLRTLNDREISMEDEATTLFRATTLAS 75 (315)
T ss_pred CchHHHHHHHh----CCChHHHHHHHHHCh-hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCChhhhhhcCcHHH
Confidence 46999999996 688999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHH
Q psy14861 1010 KLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMC 1089 (1648)
Q Consensus 1010 kll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic 1089 (1648)
|+|+.|+|..|++||+++|+|+|++|+++ +.+||+||.|+++++++++|.++|..+++++|++|++|++.||+++|+||
T Consensus 76 K~~~~y~k~~G~~YL~~~L~pvI~~i~~~-~~~~EiDP~ki~~~e~~~~n~~~L~~~~~~~~~~I~~S~~~~P~~lr~i~ 154 (315)
T cd05391 76 TLMEQYMKATATKFVHHALKDSILKIMES-KQSCELNPSKLEKNEDVNTNLEHLLNILSELVEKIFMAAEILPPTLRYIY 154 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCccccChhhcCCchhHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHHHH
Confidence 99999999999999999999999999996 56999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCCC-Cccccc
Q psy14861 1090 HCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMI 1168 (1648)
Q Consensus 1090 ~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F~-KE~~m~ 1168 (1648)
++|++.|.+|||++++..+.+||||+|||||||||++|+.||+++..|++.+||+|++|||+|||+||++.|+ ||+||.
T Consensus 155 ~~l~~~v~~kfp~~~~~~~~~Vg~FiFLRFicPAIvsP~~f~L~~~~p~~~~rR~L~lIaKvLQnLAN~~~f~~KE~~M~ 234 (315)
T cd05391 155 GCLQKSVQAKWPTNTTMRTRVVSGFVFLRLICPAILNPRMFNIISDAPSPVACRTLMMVAKSVQNLANLVEFGAKEPYME 234 (315)
T ss_pred HHHHHHHHHHCCCchhhHHHHHHHHHHHHHhccccCChhhcCCccCCCCHHHHHHHHHHHHHHHHHhCcCcCCCcchHHH
Confidence 9999999999998666556899999999999999999999999999999999999999999999999999996 999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCcccccchhhHHHHHHHHHHHHHHHhh
Q psy14861 1169 PFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGD 1226 (1648)
Q Consensus 1169 ~lN~fi~~~~~~~~~fl~~is~~~~~~~~~~~~~~~i~~~~i~~LHr~L~~~~~~I~~ 1226 (1648)
|+|+|+.++.+++++|+++++++++.++..... ......++..|||++|.|+++|++
T Consensus 235 ~ln~Fi~~~~~~~~~FL~~is~v~d~~~~~~~~-~~d~~~~~~~lH~~~~~~~~~~~~ 291 (315)
T cd05391 235 GVNPFIKSNKHRMIMFLDELGNVPELPDPTEHS-RTDLSRDLAALHEICVAHSDELRT 291 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcccccccc-ccchHhHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999877665432222 122345789999999999999984
No 6
>cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP. Once the Ras regulator p120GAP, a member of the GAP protein family, is recruited to the membrane, it is transiently immobilized to interact with Ras-GTP. The down regulation of Ras by p120GAP is a critical step in the regulation of many cellular processes, which is disrupted in approximately 30% of human cancers. p120GAP contains SH2, SH3, PH, calcium- and lipid-binding domains, suggesting its involvement in a complex network of cellular interactions in vivo.
Probab=100.00 E-value=4.6e-58 Score=534.62 Aligned_cols=290 Identities=27% Similarity=0.448 Sum_probs=269.8
Q ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccCCcccccccCchhH
Q psy14861 288 DRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGS 367 (1648)
Q Consensus 288 ~~ye~l~~Ll~~~~~~~~l~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~~~~tLfR~NS~~t 367 (1648)
++|++|.+|+. .+++++|++||++|| +|+|++|..++++|++++++..+++.|+++||+.+.+++++|||||++|
T Consensus 1 ~~y~~l~~ll~----~~~~~~~~al~~vc~-~d~~~la~~Lv~vF~~~~~~~~ll~~Li~~EI~~~~~~~tLFR~NSlaT 75 (315)
T cd05391 1 EEYSEFKELIL----QKELHVVYALSHVCG-QDRTLLASILLRIFLHEKLESLLLRTLNDREISMEDEATTLFRATTLAS 75 (315)
T ss_pred CchHHHHHHHh----CCChHHHHHHHHHCh-hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCChhhhhhcCcHHH
Confidence 36898998886 578999999999999 5999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHH
Q psy14861 368 KLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMC 447 (1648)
Q Consensus 368 kll~~y~r~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic 447 (1648)
|+|+.|+|..|++||+++|+|+|++|++++ .+||+||.|+.+++++++|.++|..++++++++|++|++.||+++|+||
T Consensus 76 K~~~~y~k~~G~~YL~~~L~pvI~~i~~~~-~~~EiDP~ki~~~e~~~~n~~~L~~~~~~~~~~I~~S~~~~P~~lr~i~ 154 (315)
T cd05391 76 TLMEQYMKATATKFVHHALKDSILKIMESK-QSCELNPSKLEKNEDVNTNLEHLLNILSELVEKIFMAAEILPPTLRYIY 154 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CccccChhhcCCchhHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHHHH
Confidence 999999999999999999999999999875 5999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccccC-ccccCc
Q psy14861 448 HCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMI 526 (1648)
Q Consensus 448 ~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m~ 526 (1648)
+++++.+.++||++++..+.+||||+|||||||||++|+.||+++..|++.+||+|++|||+|||+||++.|+ ||+||.
T Consensus 155 ~~l~~~v~~kfp~~~~~~~~~Vg~FiFLRFicPAIvsP~~f~L~~~~p~~~~rR~L~lIaKvLQnLAN~~~f~~KE~~M~ 234 (315)
T cd05391 155 GCLQKSVQAKWPTNTTMRTRVVSGFVFLRLICPAILNPRMFNIISDAPSPVACRTLMMVAKSVQNLANLVEFGAKEPYME 234 (315)
T ss_pred HHHHHHHHHHCCCchhhHHHHHHHHHHHHHhccccCChhhcCCccCCCCHHHHHHHHHHHHHHHHHhCcCcCCCcchHHH
Confidence 9999999999999876566899999999999999999999999999999999999999999999999999996 999999
Q ss_pred chHHHHHHhHHHHHHHHHHhhcCCCCcCCCCCCCcccChHHHHHHHHHHHHHHHHHhh
Q psy14861 527 PFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGD 584 (1648)
Q Consensus 527 ~lN~fi~~~~~~~~~fl~~i~~~~~~e~~~~~~~~~is~~ei~~LHr~L~~~~~~I~~ 584 (1648)
|+|+|+.++.+++++||++|+++++++++..... .....|+..||+++|.|+++|++
T Consensus 235 ~ln~Fi~~~~~~~~~FL~~is~v~d~~~~~~~~~-~d~~~~~~~lH~~~~~~~~~~~~ 291 (315)
T cd05391 235 GVNPFIKSNKHRMIMFLDELGNVPELPDPTEHSR-TDLSRDLAALHEICVAHSDELRT 291 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCccccccccc-cchHhHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999998777665433221 12235799999999999999985
No 7
>cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1). The RasGAP Ira1/2 proteins are negative regulators of the Ras-cAMP signaling pathway and conserved from yeast to human. In yeast Ras proteins are activated by GEFs, and inhibited by two GAPs, Ira1 and Ira2. Ras proteins activate the cAMP/protein kinase A (PKA) pathway, which controls metabolism, stress resistance, growth, and meiosis. Recent studies showed that the kelch proteins Gpb1 and Gpb2 inhibit Ras activity via association with Ira1 and Ira2. Gpb1/2 bind to a conserved C-terminal domain of Ira1/2, and loss of Gpb1/2 results in a destabilization of Ira1 and Ira2, leading to elevated levels of Ras2-GTP and uninhibited cAMP-PKA signaling. Since the Gpb1/2 binding domain on Ira1/2 is conserved in the human neurofibromin prote
Probab=100.00 E-value=6.8e-57 Score=535.74 Aligned_cols=317 Identities=45% Similarity=0.732 Sum_probs=297.3
Q ss_pred hhHHHHHHHHHhhhcCCchHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCchhH
Q psy14861 930 DRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGS 1009 (1648)
Q Consensus 930 ~~ye~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~T 1009 (1648)
++|++|+.+|+ .+|. ++.++++.||..++|+++++++++|++++.+.+|++.+++.||+++++++++|||||++|
T Consensus 1 ~~y~~l~~lL~---~~p~--l~~~l~~~~~~~~~~~~~~~ll~lf~~~~~l~~ll~~li~~Ei~~~~~~~~lfR~Ns~~t 75 (323)
T cd05392 1 EAYEELVNLLT---NNPL--LAMAICNVCPSSEVDELASSLVNLFDSKHLLLPLVKQLIKREVELTSRETTLFRRNSLAT 75 (323)
T ss_pred CcHHHHHHHHh---CCHH--HHHHHHHhCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCCChhhHhhcCcHHH
Confidence 46999999986 2333 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHH
Q psy14861 1010 KLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMC 1089 (1648)
Q Consensus 1010 kll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic 1089 (1648)
|+++.|+|..|++||+++|+|+|++|+++ +..+|+||.+..+++++++|+++|+.++++|+++|++|++.||+++|+||
T Consensus 76 kll~~y~r~~g~~yL~~~L~p~i~~ii~~-~~~~eidp~~~~~~~~~~~n~~~L~~~~~~~l~~I~~s~~~~P~~lr~i~ 154 (323)
T cd05392 76 RLLSAYARKKGQNYLRKTLKPLLRELVDN-PESFEVEPKREEPGEELEKNLDLLEKYCQKFIDAIISSLDRFPPELREIC 154 (323)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhC-CCccCcCccccCChHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHHHH
Confidence 99999999999999999999999999996 66899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCCC-Cccccc
Q psy14861 1090 HCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMI 1168 (1648)
Q Consensus 1090 ~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F~-KE~~m~ 1168 (1648)
++|++.+.+|||+ ..+.+||||+|||||||||++|+.||+++..|++++||+|++||||||++||++.|+ ||+||.
T Consensus 155 ~~l~~~v~~kfp~---~~~~~Vg~fiFLRfi~PAIvsP~~~~l~~~~~~~~~rr~L~~iaKvLQ~lan~~~f~~ke~~m~ 231 (323)
T cd05392 155 HHIYEVVSEKFPD---SALSAVGSFIFLRFFCPAIVSPESEGIVDTKPSPKARRSLILLAKVLQNIANGVLFSIKEPFME 231 (323)
T ss_pred HHHHHHHHHHCCC---chHHHHHHHHHHHHhhhhhCCchhcCCCCCCCChhhchhHHHHHHHHHHHhCcCcCCCCchHHH
Confidence 9999999999994 668899999999999999999999999999999999999999999999999999997 999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCCCcCCC--cccccchhhHHHHHHHHHHHHHHHhhhhccCccccc---cCCCccc
Q psy14861 1169 PFNDFLRAHFVIARQFFIQIASDCVTEDAGAH--SMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKV---VGRRPFD 1243 (1648)
Q Consensus 1169 ~lN~fi~~~~~~~~~fl~~is~~~~~~~~~~~--~~~~i~~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~---~~~~~~D 1243 (1648)
|+|+|+.++.+++++|+.+++++++.++.... |..+++.+|+..+|+++++|+++|++++.+.+++.+ .+++.++
T Consensus 232 ~ln~fi~~~~~~~~~fl~~i~~~~~~~~~~~~~~~~~~~~~~~i~~lH~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 311 (323)
T cd05392 232 SLNDFLKSNSDKIFDFLKEISSDPRNIDIVNHTFEDSEIDDTDLLFLHRFLYKHQEKIRKNLLSEKKSKANFHDGRVTFD 311 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcccchhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhccccchHH
Confidence 99999999999999999999998777655333 578899999999999999999999999988776655 5788899
Q ss_pred hHHHHHhhcCCC
Q psy14861 1244 KMATLLAYLGPP 1255 (1648)
Q Consensus 1244 ~L~~lL~~LG~P 1255 (1648)
++++++.+||||
T Consensus 312 ~~~~~~~~lg~p 323 (323)
T cd05392 312 KFDKLLVLLGQP 323 (323)
T ss_pred HHHHHHHhcCCC
Confidence 999999999998
No 8
>cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1). The RasGAP Ira1/2 proteins are negative regulators of the Ras-cAMP signaling pathway and conserved from yeast to human. In yeast Ras proteins are activated by GEFs, and inhibited by two GAPs, Ira1 and Ira2. Ras proteins activate the cAMP/protein kinase A (PKA) pathway, which controls metabolism, stress resistance, growth, and meiosis. Recent studies showed that the kelch proteins Gpb1 and Gpb2 inhibit Ras activity via association with Ira1 and Ira2. Gpb1/2 bind to a conserved C-terminal domain of Ira1/2, and loss of Gpb1/2 results in a destabilization of Ira1 and Ira2, leading to elevated levels of Ras2-GTP and uninhibited cAMP-PKA signaling. Since the Gpb1/2 binding domain on Ira1/2 is conserved in the human neurofibromin prote
Probab=100.00 E-value=1.1e-56 Score=533.82 Aligned_cols=317 Identities=45% Similarity=0.728 Sum_probs=297.8
Q ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccCCcccccccCchhH
Q psy14861 288 DRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGS 367 (1648)
Q Consensus 288 ~~ye~l~~Ll~~~~~~~~l~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~~~~tLfR~NS~~t 367 (1648)
++|++|+++|+. .|. ++.++++.||..++|+++++++++|+++|.+.+|++.+++.||+++++++++|||||++|
T Consensus 1 ~~y~~l~~lL~~---~p~--l~~~l~~~~~~~~~~~~~~~ll~lf~~~~~l~~ll~~li~~Ei~~~~~~~~lfR~Ns~~t 75 (323)
T cd05392 1 EAYEELVNLLTN---NPL--LAMAICNVCPSSEVDELASSLVNLFDSKHLLLPLVKQLIKREVELTSRETTLFRRNSLAT 75 (323)
T ss_pred CcHHHHHHHHhC---CHH--HHHHHHHhCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCCChhhHhhcCcHHH
Confidence 368999999883 333 788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHH
Q psy14861 368 KLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMC 447 (1648)
Q Consensus 368 kll~~y~r~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic 447 (1648)
|+++.|+|..|++||+++|+|+|++|++++ ..+|+||.+..+++++++|.++|+.++++|+++|++|++.||+++|+||
T Consensus 76 kll~~y~r~~g~~yL~~~L~p~i~~ii~~~-~~~eidp~~~~~~~~~~~n~~~L~~~~~~~l~~I~~s~~~~P~~lr~i~ 154 (323)
T cd05392 76 RLLSAYARKKGQNYLRKTLKPLLRELVDNP-ESFEVEPKREEPGEELEKNLDLLEKYCQKFIDAIISSLDRFPPELREIC 154 (323)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhCC-CccCcCccccCChHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHHHH
Confidence 999999999999999999999999999875 5899999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccccC-ccccCc
Q psy14861 448 HCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMI 526 (1648)
Q Consensus 448 ~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m~ 526 (1648)
+++++.+.++||+ ..+.+||||+|||||||||++|+.||+++..|++++||+|++||||||++|||+.|+ ||+||.
T Consensus 155 ~~l~~~v~~kfp~---~~~~~Vg~fiFLRfi~PAIvsP~~~~l~~~~~~~~~rr~L~~iaKvLQ~lan~~~f~~ke~~m~ 231 (323)
T cd05392 155 HHIYEVVSEKFPD---SALSAVGSFIFLRFFCPAIVSPESEGIVDTKPSPKARRSLILLAKVLQNIANGVLFSIKEPFME 231 (323)
T ss_pred HHHHHHHHHHCCC---chHHHHHHHHHHHHhhhhhCCchhcCCCCCCCChhhchhHHHHHHHHHHHhCcCcCCCCchHHH
Confidence 9999999999998 467899999999999999999999999999889999999999999999999999997 999999
Q ss_pred chHHHHHHhHHHHHHHHHHhhcCCCCcCCCCC--CCcccChHHHHHHHHHHHHHHHHHhhhhccCccccc---cCCCCcc
Q psy14861 527 PFNDFLRAHFVIARQFFIQIASDCVTEDAGAH--SMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKV---VGRRPFD 601 (1648)
Q Consensus 527 ~lN~fi~~~~~~~~~fl~~i~~~~~~e~~~~~--~~~~is~~ei~~LHr~L~~~~~~I~~~L~~~~~~~~---~~~~~fD 601 (1648)
|+|+|+.++.+++++||.++++++..++.... |..+++.+|+..+|++|++|+++|++++.+.++++. .|+..|+
T Consensus 232 ~ln~fi~~~~~~~~~fl~~i~~~~~~~~~~~~~~~~~~~~~~~i~~lH~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 311 (323)
T cd05392 232 SLNDFLKSNSDKIFDFLKEISSDPRNIDIVNHTFEDSEIDDTDLLFLHRFLYKHQEKIRKNLLSEKKSKANFHDGRVTFD 311 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcccchhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhccccchHH
Confidence 99999999999999999999998887776433 588999999999999999999999999988766554 6889999
Q ss_pred hHHHHHhhcCCC
Q psy14861 602 KMATLLAYLGPP 613 (1648)
Q Consensus 602 ~l~~lL~~LG~P 613 (1648)
.++++|++||+|
T Consensus 312 ~~~~~~~~lg~p 323 (323)
T cd05392 312 KFDKLLVLLGQP 323 (323)
T ss_pred HHHHHHHhcCCC
Confidence 999999999998
No 9
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=100.00 E-value=1.2e-54 Score=506.18 Aligned_cols=288 Identities=24% Similarity=0.395 Sum_probs=262.4
Q ss_pred hhHHHHHHHHHhhhcCCchHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCC-CcccccccCchh
Q psy14861 930 DRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSD-CMQTLFRGNSLG 1008 (1648)
Q Consensus 930 ~~ye~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~-~~~~LfR~NS~~ 1008 (1648)
++|+++.++++ ..-..++.+|..+++.++.|++|.+|+++|+++|....+++.++..||+.++ ++++||||||++
T Consensus 1 ~~y~~~~~~~~----~~~~~l~~~l~~~~~~~~~~ela~~Lv~if~~~~~~~~~l~~Li~~EI~~~~~~~~~lfRgNsl~ 76 (309)
T cd05136 1 EVYKEFAEYLT----SNYARLCEVLEPVLSVRAKEELACALVHVLQSTGKAKDFLTDLVMAEVDRCGENERLIFRENTLA 76 (309)
T ss_pred CchHHHHHHHH----hhHHHHHHHHHhhCCchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccccHHHHHhcCcHH
Confidence 46999999887 2334689999999999999999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHH
Q psy14861 1009 SKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSM 1088 (1648)
Q Consensus 1009 Tkll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~I 1088 (1648)
||+|+.|+|..|++||+++|+|+|++|+++ +.+||+||.|++ +.++++|+++|+.++++||++|++|++.||+++|+|
T Consensus 77 tK~~~~y~k~~G~~YL~~~L~p~I~~ii~~-~~~~EiDP~k~~-~~~l~~n~~~L~~~~~~~~~~I~~S~~~~P~~lR~i 154 (309)
T cd05136 77 TKAIEEYLKLVGQDYLQDTLGEFIRALYES-EENCEVDPSKCS-ASELPDHQANLRMCCELAWCKIINSHCVFPAELREV 154 (309)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCCcccCccccC-chhHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHHH
Confidence 999999999999999999999999999996 679999999998 457899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCCC-Ccccc
Q psy14861 1089 CHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHM 1167 (1648)
Q Consensus 1089 c~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F~-KE~~m 1167 (1648)
|+++++.+.+++++ +..+.+||||+|||||||||++|+.||+++..|++++||+|++|||||||+||++.|+ ||+||
T Consensus 155 ~~~lr~~~~~~~~~--~~~~~~Vg~fiFLRFi~PAIvsP~~f~l~~~~p~~~~rR~LtlIAKvLQnlAN~~~f~~KE~~M 232 (309)
T cd05136 155 FASWRERCEDRGRE--DIADRLISASLFLRFLCPAILSPSLFNLTQEYPSPRTARTLTLIAKVIQNLANFTKFGGKEEYM 232 (309)
T ss_pred HHHHHHHHhhhccc--hHHHHHHHHHHHHHHhccccCCchhcCCCCCCCChHHhhhHHHHHHHHHHHHCCCCCCCcchHH
Confidence 99999999999873 4556899999999999999999999999999999999999999999999999999995 99999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCcccccc-hhhHHHHHHHHHHHHHHHhh
Q psy14861 1168 IPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFIS-DTNVLALHRLLYNHQEKIGD 1226 (1648)
Q Consensus 1168 ~~lN~fi~~~~~~~~~fl~~is~~~~~~~~~~~~~~~i~-~~~i~~LHr~L~~~~~~I~~ 1226 (1648)
.|+|+|+.++.+++++|+.+++++++.++. ..--.|++ ..|+..+|++|++|+++|++
T Consensus 233 ~~ln~fi~~~~~~~~~fL~~is~v~~~~~~-~~~d~y~dl~~el~~lH~ll~e~~~~l~~ 291 (309)
T cd05136 233 EFMNDFLEREWGRMKDFLLEISNPDTISAP-LGFDGYIDLGKELSVLHSLLWEVLAQLDQ 291 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcccc-cchhhhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999987665432 11112222 35889999999999999974
No 10
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=100.00 E-value=7e-54 Score=499.78 Aligned_cols=288 Identities=24% Similarity=0.385 Sum_probs=262.5
Q ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccC-CcccccccCchh
Q psy14861 288 DRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSD-CMQTLFRGNSLG 366 (1648)
Q Consensus 288 ~~ye~l~~Ll~~~~~~~~l~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~-~~~tLfR~NS~~ 366 (1648)
++|.++.+.++. ....++.+|..++|.++.|++|..|+++|.++|+..++++.|+..||+.++ ++++||||||++
T Consensus 1 ~~y~~~~~~~~~----~~~~l~~~l~~~~~~~~~~ela~~Lv~if~~~~~~~~~l~~Li~~EI~~~~~~~~~lfRgNsl~ 76 (309)
T cd05136 1 EVYKEFAEYLTS----NYARLCEVLEPVLSVRAKEELACALVHVLQSTGKAKDFLTDLVMAEVDRCGENERLIFRENTLA 76 (309)
T ss_pred CchHHHHHHHHh----hHHHHHHHHHhhCCchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccccHHHHHhcCcHH
Confidence 368888887772 334689999999999999999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHH
Q psy14861 367 SKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSM 446 (1648)
Q Consensus 367 tkll~~y~r~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~I 446 (1648)
||+|+.|+|..|++||+++|+|+|++|++++ .+||+||.|+++ .++++|.++|+.++++||++|++|++.||+++|+|
T Consensus 77 tK~~~~y~k~~G~~YL~~~L~p~I~~ii~~~-~~~EiDP~k~~~-~~l~~n~~~L~~~~~~~~~~I~~S~~~~P~~lR~i 154 (309)
T cd05136 77 TKAIEEYLKLVGQDYLQDTLGEFIRALYESE-ENCEVDPSKCSA-SELPDHQANLRMCCELAWCKIINSHCVFPAELREV 154 (309)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CCcccCccccCc-hhHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHHH
Confidence 9999999999999999999999999999875 699999999984 56899999999999999999999999999999999
Q ss_pred HHHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccccC-ccccC
Q psy14861 447 CHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHM 525 (1648)
Q Consensus 447 c~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m 525 (1648)
|+++++.+.+++++ +....+||||+|||||||||++|+.||+++..|++++||+|++|||||||+||++.|+ ||+||
T Consensus 155 ~~~lr~~~~~~~~~--~~~~~~Vg~fiFLRFi~PAIvsP~~f~l~~~~p~~~~rR~LtlIAKvLQnlAN~~~f~~KE~~M 232 (309)
T cd05136 155 FASWRERCEDRGRE--DIADRLISASLFLRFLCPAILSPSLFNLTQEYPSPRTARTLTLIAKVIQNLANFTKFGGKEEYM 232 (309)
T ss_pred HHHHHHHHhhhccc--hHHHHHHHHHHHHHHhccccCCchhcCCCCCCCChHHhhhHHHHHHHHHHHHCCCCCCCcchHH
Confidence 99999999999864 2456899999999999999999999999999999999999999999999999999995 99999
Q ss_pred cchHHHHHHhHHHHHHHHHHhhcCCCCcCCCCCCCcccCh-HHHHHHHHHHHHHHHHHhh
Q psy14861 526 IPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISD-TNVLALHRLLYNHQEKIGD 584 (1648)
Q Consensus 526 ~~lN~fi~~~~~~~~~fl~~i~~~~~~e~~~~~~~~~is~-~ei~~LHr~L~~~~~~I~~ 584 (1648)
.|+|+|+.++.+++++||.+++++++.++... --.|++. .|++.+|++|++|+++|++
T Consensus 233 ~~ln~fi~~~~~~~~~fL~~is~v~~~~~~~~-~d~y~dl~~el~~lH~ll~e~~~~l~~ 291 (309)
T cd05136 233 EFMNDFLEREWGRMKDFLLEISNPDTISAPLG-FDGYIDLGKELSVLHSLLWEVLAQLDQ 291 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcccccc-hhhhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998876665321 1134433 6899999999999999985
No 11
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=100.00 E-value=3.4e-52 Score=487.29 Aligned_cols=265 Identities=27% Similarity=0.445 Sum_probs=247.0
Q ss_pred hHHHHHHHHHhh---hcCCchHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCch
Q psy14861 931 RFEELVKLVTLI---SDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSL 1007 (1648)
Q Consensus 931 ~ye~L~~Ll~~l---~~~~~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~ 1007 (1648)
.|++|++||..- ++.|..++++.+.+++++++.+++|..||++|.++|.+.++++.+++.||+++.++++||||||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~eela~~Lv~if~~~g~~~~fL~~l~~~Ev~~~~~~~tLFR~NSl 81 (337)
T cd05395 2 RYQPLVSLLCEEVKKGNQGWPDLIMLIDETTTAESRQDVANNLVKLFLGQGLVKEFLDLLFKLELDKTTEPNTLFRSNSL 81 (337)
T ss_pred chhHHHHHHHHHHhcccCCchhHHHHHHhhcChhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCCCHhHHhhcCcH
Confidence 489999998642 34677778999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCC--------------hhhHHHHHHHHHHHHHHHHHH
Q psy14861 1008 GSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP--------------SENIENNRRELISWTKKVFDA 1073 (1648)
Q Consensus 1008 ~Tkll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~--------------~e~~~~N~~~L~~~~~~~l~~ 1073 (1648)
|||+|+.|+|..|++||+++|+|+|++|+++ +.+||+||.|++. ++.+++|.++|+.++++||++
T Consensus 82 aTK~m~~y~k~~G~~YL~~~L~p~I~~I~~~-~~~~EiDP~ki~~~~~~~s~~~r~~t~~e~ie~n~~~L~~~~~~~l~~ 160 (337)
T cd05395 82 ASKSMESFLKVAGMQYLHRVLGPIINRVFEE-KKYVELDPSKVELKDVGCSGLHRQQTESEVIEQSSQLLQSYLGELLTA 160 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcccCcChHhccccccccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997 5689999999963 245789999999999999999
Q ss_pred HHhhcccCCHHHHHHHHHHHHHHHhhCCCCCC--ccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHH
Q psy14861 1074 IIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQ--NNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKI 1151 (1648)
Q Consensus 1074 I~~S~~~~P~~lR~Ic~~i~~~v~~kFP~~~e--~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKv 1151 (1648)
|++|++.||++||++|++|++.+.++||+..+ ..+.+||||+|||||||||++|+.||+++.+|++.++|+|++|||+
T Consensus 161 I~~S~~~~P~~iR~i~~~l~~~v~~rFp~~~~~~~~~~~VggFiFLRFicPAIvSP~~f~L~~~~p~~~~rR~LtLIAKv 240 (337)
T cd05395 161 ILQSASYCPLVIRAVFRQLFLRVQERFPDPQYRKVKFIAVTSFLCLRFFSPAIMSPKLFHLREKHADARTSRTLLLLAKA 240 (337)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHHHHHhccccCCchhcCccCCCCCHHHHhHHHHHHHH
Confidence 99999999999999999999999999998763 3468999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCC---CCccccchhHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy14861 1152 LQNIANHVEF---SKEAHMIPFNDFLRAHFVIARQFFIQIASDCVTED 1196 (1648)
Q Consensus 1152 LQnlAN~~~F---~KE~~m~~lN~fi~~~~~~~~~fl~~is~~~~~~~ 1196 (1648)
|||+||++.| +||+||.|||+||.++.+++++|+++++++++.++
T Consensus 241 LQnLAN~~~f~~~~KE~~M~plN~FI~~~~~~~~~FL~~i~~v~~~ee 288 (337)
T cd05395 241 VQTVGNMDTLACRAKEPWMVPLQPAIQQGITQLKDFITRLVNCEESEE 288 (337)
T ss_pred HHHHhCcCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCChhh
Confidence 9999999988 39999999999999999999999999998776665
No 12
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=100.00 E-value=7.1e-52 Score=478.02 Aligned_cols=260 Identities=30% Similarity=0.450 Sum_probs=241.1
Q ss_pred hHHHHHHHHHhhhc-CC-chHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCchh
Q psy14861 931 RFEELVKLVTLISD-KG-ELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLG 1008 (1648)
Q Consensus 931 ~ye~L~~Ll~~l~~-~~-~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~ 1008 (1648)
.|++|.+||..-.+ +| +...+.+|+++|+ +.+++|..||++|.++|++.+|++.++++||++++++++||||||++
T Consensus 2 ~y~~l~~ll~~s~~~~p~~~s~~~~l~~v~~--~~~elA~~Lv~if~~~~~~~~~l~~l~~~Ev~~~~~~~tLFRgNSla 79 (310)
T cd05134 2 YYSPLRDLLLKSADVEPVSASAAHILGEVCR--EKQEAAIPLVRLFLHYGKIVPFISAIASAEVNRTQDPNTIFRGNSLT 79 (310)
T ss_pred ccHHHHHHHHhCcccCCcchhHHHHHHHhCc--cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCcchhhhcCcHH
Confidence 48999999865432 23 2346788999999 66899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHH
Q psy14861 1009 SKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSM 1088 (1648)
Q Consensus 1009 Tkll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~I 1088 (1648)
||+|+.|+|..|++||+++|+|+|++|+++ +.+||+||.|+++++++++|+++|..+++.+|++|++|.++||+.+|.|
T Consensus 80 TK~m~~y~k~~G~~YL~~tL~pvI~~i~~~-~~~~EvDP~k~~~~e~le~n~~~L~~~~~~i~~~I~~S~~~~P~~l~~i 158 (310)
T cd05134 80 SKCIDETMKLAGMHYLQVTLKPIIDEICQE-HKPCEIDPVKLKDGENLENNRENLRQYVDRIFRVITKSGVSCPTVMCDI 158 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCcccCcccCCchhhHHHHHHHHHHHHHHHHHHHHhchhcCcHHHHHH
Confidence 999999999999999999999999999995 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCC---C-CCc
Q psy14861 1089 CHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVE---F-SKE 1164 (1648)
Q Consensus 1089 c~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~---F-~KE 1164 (1648)
|++|++.+.+|||+.++..+.+||||+|||||||||+||+.||+++.+|+++++|+|++|||+|||+||++. + .||
T Consensus 159 ~~~lr~~v~~rf~~~~~~~~~aVggFiFLRF~cPAIlsP~~f~L~~~~p~~~~~RtLtLIaKvLQnLAN~~~~~~~~~KE 238 (310)
T cd05134 159 FFSLRESAAKRFQVDPDVRYTAVSSFIFLRFFAPAILSPNLFQLTPHHPDPQTSRTLTLISKTIQTLGSLSKSKSANFKE 238 (310)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhccccCCchhcccccCCCChhhhHHHHHHHHHHHHHhcccccccCCcCc
Confidence 999999999999887788899999999999999999999999999999999999999999999999999864 3 499
Q ss_pred cccchhHHHHHH--HHHHHHHHHHHhhcCCC
Q psy14861 1165 AHMIPFNDFLRA--HFVIARQFFIQIASDCV 1193 (1648)
Q Consensus 1165 ~~m~~lN~fi~~--~~~~~~~fl~~is~~~~ 1193 (1648)
+||.|+|+|+.+ +.+++++|+++||+..+
T Consensus 239 ~~M~~~~~f~~~~~~~~~~~~FL~~is~~~~ 269 (310)
T cd05134 239 SYMAAFYDYFNEQKYADAVKNFLDLISSSGR 269 (310)
T ss_pred hHHHhhCHHHHhhhhHHHHHHHHHHHhCCCC
Confidence 999999999976 46899999999987443
No 13
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=100.00 E-value=2.1e-51 Score=474.16 Aligned_cols=261 Identities=30% Similarity=0.448 Sum_probs=242.7
Q ss_pred HHHHHHHHHHhhccCCch--HHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccCCcccccccCchh
Q psy14861 289 RFEELVKLVTLISDKGEL--SIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLG 366 (1648)
Q Consensus 289 ~ye~l~~Ll~~~~~~~~l--~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~~~~tLfR~NS~~ 366 (1648)
.|..|.+||....+..+. +.|++|+++|+ +.+++|..||++|.++|++.+||+.|++.||++++++++||||||++
T Consensus 2 ~y~~l~~ll~~s~~~~p~~~s~~~~l~~v~~--~~~elA~~Lv~if~~~~~~~~~l~~l~~~Ev~~~~~~~tLFRgNSla 79 (310)
T cd05134 2 YYSPLRDLLLKSADVEPVSASAAHILGEVCR--EKQEAAIPLVRLFLHYGKIVPFISAIASAEVNRTQDPNTIFRGNSLT 79 (310)
T ss_pred ccHHHHHHHHhCcccCCcchhHHHHHHHhCc--cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCcchhhhcCcHH
Confidence 478888888776554444 47889999999 67899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHH
Q psy14861 367 SKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSM 446 (1648)
Q Consensus 367 tkll~~y~r~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~I 446 (1648)
||+|+.|+|..|++||+++|+|+|++|+++ +.+||+||.|+.+++++++|.++|..+++.+|++|++|.++||+.||.|
T Consensus 80 TK~m~~y~k~~G~~YL~~tL~pvI~~i~~~-~~~~EvDP~k~~~~e~le~n~~~L~~~~~~i~~~I~~S~~~~P~~l~~i 158 (310)
T cd05134 80 SKCIDETMKLAGMHYLQVTLKPIIDEICQE-HKPCEIDPVKLKDGENLENNRENLRQYVDRIFRVITKSGVSCPTVMCDI 158 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCcccCcccCCchhhHHHHHHHHHHHHHHHHHHHHhchhcCcHHHHHH
Confidence 999999999999999999999999999986 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccc---c-Ccc
Q psy14861 447 CHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVE---F-SKE 522 (1648)
Q Consensus 447 c~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~---f-~KE 522 (1648)
|++|++.+.+|||..++..+.+||||+|||||||||++|+.||+++.+|+++++|+|++|||+||||||++. + .||
T Consensus 159 ~~~lr~~v~~rf~~~~~~~~~aVggFiFLRF~cPAIlsP~~f~L~~~~p~~~~~RtLtLIaKvLQnLAN~~~~~~~~~KE 238 (310)
T cd05134 159 FFSLRESAAKRFQVDPDVRYTAVSSFIFLRFFAPAILSPNLFQLTPHHPDPQTSRTLTLISKTIQTLGSLSKSKSANFKE 238 (310)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhccccCCchhcccccCCCChhhhHHHHHHHHHHHHHhcccccccCCcCc
Confidence 999999999999888888889999999999999999999999999999999999999999999999999864 3 399
Q ss_pred ccCcchHHHHHH--hHHHHHHHHHHhhcCCCC
Q psy14861 523 AHMIPFNDFLRA--HFVIARQFFIQIASDCVT 552 (1648)
Q Consensus 523 ~~m~~lN~fi~~--~~~~~~~fl~~i~~~~~~ 552 (1648)
+||.|+|+|+.+ +.+++++|+++|++....
T Consensus 239 ~~M~~~~~f~~~~~~~~~~~~FL~~is~~~~~ 270 (310)
T cd05134 239 SYMAAFYDYFNEQKYADAVKNFLDLISSSGRR 270 (310)
T ss_pred hHHHhhCHHHHhhhhHHHHHHHHHHHhCCCCC
Confidence 999999999976 468899999999876543
No 14
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=100.00 E-value=1.6e-51 Score=481.66 Aligned_cols=266 Identities=27% Similarity=0.441 Sum_probs=247.3
Q ss_pred HHHHHHHHHHhhc---cCCchHHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccCCcccccccCch
Q psy14861 289 RFEELVKLVTLIS---DKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSL 365 (1648)
Q Consensus 289 ~ye~l~~Ll~~~~---~~~~l~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~~~~tLfR~NS~ 365 (1648)
.|..|++||..-. +.|+..+++.|.++++.++.+++|..||++|.++|.+.++|+.|++.||+.+.++++||||||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~eela~~Lv~if~~~g~~~~fL~~l~~~Ev~~~~~~~tLFR~NSl 81 (337)
T cd05395 2 RYQPLVSLLCEEVKKGNQGWPDLIMLIDETTTAESRQDVANNLVKLFLGQGLVKEFLDLLFKLELDKTTEPNTLFRSNSL 81 (337)
T ss_pred chhHHHHHHHHHHhcccCCchhHHHHHHhhcChhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCCCHhHHhhcCcH
Confidence 4778888887543 3567778999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCC--------------hhhHHHHHHHHHHHHHHHHHH
Q psy14861 366 GSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP--------------SENIENNRRELISWTKKVFDA 431 (1648)
Q Consensus 366 ~tkll~~y~r~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~--------------~e~ie~n~~~L~~~~~~~l~~ 431 (1648)
|||+|+.|+|..|++||+++|+|+|++|++++ .+||+||.|++. ++.+++|.++|+.++++||++
T Consensus 82 aTK~m~~y~k~~G~~YL~~~L~p~I~~I~~~~-~~~EiDP~ki~~~~~~~s~~~r~~t~~e~ie~n~~~L~~~~~~~l~~ 160 (337)
T cd05395 82 ASKSMESFLKVAGMQYLHRVLGPIINRVFEEK-KYVELDPSKVELKDVGCSGLHRQQTESEVIEQSSQLLQSYLGELLTA 160 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cccCcChHhccccccccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999975 489999999963 245789999999999999999
Q ss_pred HHhhcccCCHHHHHHHHHHHHHHHhHCCCCCc--ccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHH
Q psy14861 432 IIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQ--NNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKI 509 (1648)
Q Consensus 432 I~~S~~~~P~~lR~Ic~~i~~~v~~rFp~~~~--~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKv 509 (1648)
|++|++.||++||++|++|++.+.++||+..+ ..+.+||||+|||||||||++|+.||+++.+|++.+||||++|||+
T Consensus 161 I~~S~~~~P~~iR~i~~~l~~~v~~rFp~~~~~~~~~~~VggFiFLRFicPAIvSP~~f~L~~~~p~~~~rR~LtLIAKv 240 (337)
T cd05395 161 ILQSASYCPLVIRAVFRQLFLRVQERFPDPQYRKVKFIAVTSFLCLRFFSPAIMSPKLFHLREKHADARTSRTLLLLAKA 240 (337)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHHHHHhccccCCchhcCccCCCCCHHHHhHHHHHHHH
Confidence 99999999999999999999999999999763 4468999999999999999999999999999999999999999999
Q ss_pred hHHhhccccc---CccccCcchHHHHHHhHHHHHHHHHHhhcCCCCcCC
Q psy14861 510 LQNIANHVEF---SKEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDA 555 (1648)
Q Consensus 510 LQnlAN~~~f---~KE~~m~~lN~fi~~~~~~~~~fl~~i~~~~~~e~~ 555 (1648)
|||+||+..| +||+||.|||+||.++.+++++|+++|+++++.|+.
T Consensus 241 LQnLAN~~~f~~~~KE~~M~plN~FI~~~~~~~~~FL~~i~~v~~~ee~ 289 (337)
T cd05395 241 VQTVGNMDTLACRAKEPWMVPLQPAIQQGITQLKDFITRLVNCEESEEE 289 (337)
T ss_pred HHHHhCcCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhc
Confidence 9999999988 399999999999999999999999999988877764
No 15
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=100.00 E-value=1.4e-51 Score=481.60 Aligned_cols=265 Identities=29% Similarity=0.427 Sum_probs=250.4
Q ss_pred HHHHHHHHHHhhccCCc--hHHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccCCcccccccCchh
Q psy14861 289 RFEELVKLVTLISDKGE--LSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLG 366 (1648)
Q Consensus 289 ~ye~l~~Ll~~~~~~~~--l~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~~~~tLfR~NS~~ 366 (1648)
.|..|.+||....+.++ .+.|..|+++|+ .+.+++|..|+.+|.++|++.++|..+++.||+++.+++++|||||++
T Consensus 2 ~y~~l~~ll~~~~~~~~~~~s~~~~l~~v~~-~~~~~~a~~Lv~if~~~g~l~~ll~~li~~Ei~~t~~~~tLFRgNSl~ 80 (315)
T cd05128 2 YYQPLRDLLLESVDVGPISASAAAILEEVCR-EERQDVAVPLVKLFLGQGLIVPFLDALAQLELKRTQDPNTLFRGNSLA 80 (315)
T ss_pred CcHHHHHHHHcccccCCCChhHHHHHHHhCc-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHhHHhcCCcHH
Confidence 47888888886655444 568999999999 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHH
Q psy14861 367 SKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSM 446 (1648)
Q Consensus 367 tkll~~y~r~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~I 446 (1648)
||+++.|+|..|++||+++|+|+|++|++++ .++|+||.|++.++.+++|+++|+.++++++++|++|++.||+++|+|
T Consensus 81 TK~~~~y~r~~G~~YL~~~L~pvI~~i~~~~-~~~EiDP~ki~~~~~~e~n~~~L~~~~~~~~~~I~~S~~~~P~~lr~i 159 (315)
T cd05128 81 SKSMEEFMKLAGMHYLHVTLKPIIDKIFEEK-KYCELDPSKVKLGEVLENNRENLRYYLDRLFEAITKSSVSCPTVMCDI 159 (315)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC-CCcccChhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999999999999999975 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhccccc----Ccc
Q psy14861 447 CHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF----SKE 522 (1648)
Q Consensus 447 c~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f----~KE 522 (1648)
|+++++.+.++||++++..+.+||||+|||||||||++|+.||+++.+|++++||+|++|||+|||+||++.| +||
T Consensus 160 ~~~l~~~v~~kFp~~~~~~~~~V~gfiFLRfi~PAIvsP~~f~l~~~~p~~~~rR~L~lIaKvLQnlaN~~~f~~~~~KE 239 (315)
T cd05128 160 FYQLRERVGERFPGDPDVQYLAVSSFLFLRFFAPAILSPKLFHLRPHHADARTSRTLLLLSKAVQTLGNLGSSAGSSFKE 239 (315)
T ss_pred HHHHHHHHHHHCCCCccchHHHHHHHHHHHHHhHHhcChHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCcCcccCCCCCC
Confidence 9999999999999987777889999999999999999999999999999999999999999999999999775 599
Q ss_pred ccCcch--HHHHHHhHHHHHHHHHHhhcCCCCcCC
Q psy14861 523 AHMIPF--NDFLRAHFVIARQFFIQIASDCVTEDA 555 (1648)
Q Consensus 523 ~~m~~l--N~fi~~~~~~~~~fl~~i~~~~~~e~~ 555 (1648)
+||+|| |+|+.++.+++++|+++++++++.|+.
T Consensus 240 ~~M~pl~~n~fi~~~~~~~~~fL~~is~v~~~ee~ 274 (315)
T cd05128 240 QWMAPLFKQPTEEQYVSAVKDFLDRISSTEEREES 274 (315)
T ss_pred HHHhccccChHHHHHHHHHHHHHHHHcCCCChhhc
Confidence 999999 999999999999999999998877764
No 16
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=100.00 E-value=1.7e-51 Score=472.03 Aligned_cols=262 Identities=27% Similarity=0.423 Sum_probs=240.8
Q ss_pred HHHHHHHHHHhhccCCch--HHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccCCcccccccCchh
Q psy14861 289 RFEELVKLVTLISDKGEL--SIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLG 366 (1648)
Q Consensus 289 ~ye~l~~Ll~~~~~~~~l--~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~~~~tLfR~NS~~ 366 (1648)
.|+.|.+||....|..+. +.++.|+++|.. ..++|+.|+++|.+++++.++|+.+++.||+.+.++++||||||++
T Consensus 2 ~Y~~l~~ll~~s~~~~p~~~s~~~~l~e~~~~--~~~~a~~Lvrlf~~~~~~~~fl~~li~~Ev~~t~~~~tLFRgNSla 79 (313)
T cd05394 2 YYSSLRSLLLKSPDVQPISASAAYILGEVCRD--KYDAVLPLVRLLLHHQKLVPFVAAVAELDLKDTQEANTIFRGNSLA 79 (313)
T ss_pred chHHHHHHHHhCcccCCCcccHHHHHHHHHhh--HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCHhhHhhcCcHH
Confidence 478888888876655544 377889999964 6689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHH
Q psy14861 367 SKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSM 446 (1648)
Q Consensus 367 tkll~~y~r~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~I 446 (1648)
||+|+.|+|..|++||+++|+|+|++|+++ +.+||+||.|+.+++++++|.++|+.+++++|++|++|.+.||+++|+|
T Consensus 80 TK~m~~y~k~~G~~YL~~tL~pvI~~i~~~-~~~~EvDP~Kv~~g~~le~n~~~L~~~~~~~~~~I~~S~~~~P~~lr~i 158 (313)
T cd05394 80 TRCLDEMMKIVGKHYLKVTLKPVLDEICDS-PKPCEIDPIKLKEGDNVENNKENLRYYVDKVFFCIVKSSMSCPTVMCDI 158 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCceeChhhcCCcchHHHHHHHHHHHHHHHHHHHHhCcccCcHHHHHH
Confidence 999999999999999999999999999996 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccccC------
Q psy14861 447 CHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS------ 520 (1648)
Q Consensus 447 c~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f~------ 520 (1648)
|++|++.+.+|||+.++..+.+||||+|||||||||++|+.||+++.+|+++++|+|++|||+||||||+..|+
T Consensus 159 ~~~lr~~v~~rFp~~~~~~~~aVsgFlFLRF~cPAIlSP~lf~L~~~~p~~~~~RtLtLIaKvLQnLAN~~~~~~~~~~~ 238 (313)
T cd05394 159 FYSLRHMAVKRFPNDPHVQYSAVSSFVFLRFFAVAVVSPHTFHLRPHHPDAQTSRTLTLISKTIQTLGSWGSLTKSKPSS 238 (313)
T ss_pred HHHHHHHHHHHCCChHhhHHHHHHHHHHHHHhhhhhcCcccccccCCCCChhhhHHHHHHHHHHHHHhCccccccCCccc
Confidence 99999999999999866678899999999999999999999999999999999999999999999999998764
Q ss_pred -ccccCcchHHHHHHh--HHHHHHHHHHhhcCCCCc
Q psy14861 521 -KEAHMIPFNDFLRAH--FVIARQFFIQIASDCVTE 553 (1648)
Q Consensus 521 -KE~~m~~lN~fi~~~--~~~~~~fl~~i~~~~~~e 553 (1648)
||+||.|+|+|+.+. ..++++|+++|++....+
T Consensus 239 ~KE~~M~~~~~~~~~~~~~~~v~~FLd~Is~~~~~~ 274 (313)
T cd05394 239 FKETFMCEFFKMFQEETYTKVVKKFLDEISSTETKE 274 (313)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 899999999986543 478999999998755433
No 17
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=100.00 E-value=2.7e-51 Score=470.42 Aligned_cols=259 Identities=27% Similarity=0.422 Sum_probs=237.2
Q ss_pred hHHHHHHHHHhhhc-CC-chHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCchh
Q psy14861 931 RFEELVKLVTLISD-KG-ELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLG 1008 (1648)
Q Consensus 931 ~ye~L~~Ll~~l~~-~~-~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~ 1008 (1648)
.|++|.+||..-.+ +| .-..+..|+++|.. ..++|..|+++|.+++.+..+++.+++.||+.++++++||||||++
T Consensus 2 ~Y~~l~~ll~~s~~~~p~~~s~~~~l~e~~~~--~~~~a~~Lvrlf~~~~~~~~fl~~li~~Ev~~t~~~~tLFRgNSla 79 (313)
T cd05394 2 YYSSLRSLLLKSPDVQPISASAAYILGEVCRD--KYDAVLPLVRLLLHHQKLVPFVAAVAELDLKDTQEANTIFRGNSLA 79 (313)
T ss_pred chHHHHHHHHhCcccCCCcccHHHHHHHHHhh--HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCHhhHhhcCcHH
Confidence 48999999865433 22 22256788999965 6689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHH
Q psy14861 1009 SKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSM 1088 (1648)
Q Consensus 1009 Tkll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~I 1088 (1648)
||+|+.|+|..|++||+++|+|+|++|++. +.+||+||.|+++++++++|+++|+.+++++|++|++|.+.||+++|+|
T Consensus 80 TK~m~~y~k~~G~~YL~~tL~pvI~~i~~~-~~~~EvDP~Kv~~g~~le~n~~~L~~~~~~~~~~I~~S~~~~P~~lr~i 158 (313)
T cd05394 80 TRCLDEMMKIVGKHYLKVTLKPVLDEICDS-PKPCEIDPIKLKEGDNVENNKENLRYYVDKVFFCIVKSSMSCPTVMCDI 158 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCceeChhhcCCcchHHHHHHHHHHHHHHHHHHHHhCcccCcHHHHHH
Confidence 999999999999999999999999999995 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCCC------
Q psy14861 1089 CHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS------ 1162 (1648)
Q Consensus 1089 c~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F~------ 1162 (1648)
|++|++.+.+|||+..+..+.+||||+|||||||||+||+.||+++.+|+++++|+|++|||+|||+||+..|+
T Consensus 159 ~~~lr~~v~~rFp~~~~~~~~aVsgFlFLRF~cPAIlSP~lf~L~~~~p~~~~~RtLtLIaKvLQnLAN~~~~~~~~~~~ 238 (313)
T cd05394 159 FYSLRHMAVKRFPNDPHVQYSAVSSFVFLRFFAVAVVSPHTFHLRPHHPDAQTSRTLTLISKTIQTLGSWGSLTKSKPSS 238 (313)
T ss_pred HHHHHHHHHHHCCChHhhHHHHHHHHHHHHHhhhhhcCcccccccCCCCChhhhHHHHHHHHHHHHHhCccccccCCccc
Confidence 99999999999998655578899999999999999999999999999999999999999999999999998874
Q ss_pred -CccccchhHHHHHH-H-HHHHHHHHHHhhcCC
Q psy14861 1163 -KEAHMIPFNDFLRA-H-FVIARQFFIQIASDC 1192 (1648)
Q Consensus 1163 -KE~~m~~lN~fi~~-~-~~~~~~fl~~is~~~ 1192 (1648)
||+||.|+|+|+.+ + ..+|++|+++|++..
T Consensus 239 ~KE~~M~~~~~~~~~~~~~~~v~~FLd~Is~~~ 271 (313)
T cd05394 239 FKETFMCEFFKMFQEETYTKVVKKFLDEISSTE 271 (313)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 89999999998654 3 578999999998643
No 18
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=100.00 E-value=4.2e-51 Score=477.69 Aligned_cols=264 Identities=29% Similarity=0.420 Sum_probs=247.9
Q ss_pred hHHHHHHHHHhhhc-CC-chHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCchh
Q psy14861 931 RFEELVKLVTLISD-KG-ELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLG 1008 (1648)
Q Consensus 931 ~ye~L~~Ll~~l~~-~~-~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~ 1008 (1648)
.|++|.+||..-.+ +| +...+..|+++|+ ++.+++|..|+.+|.++|.+.++++.+++.||+.+.++++||||||++
T Consensus 2 ~y~~l~~ll~~~~~~~~~~~s~~~~l~~v~~-~~~~~~a~~Lv~if~~~g~l~~ll~~li~~Ei~~t~~~~tLFRgNSl~ 80 (315)
T cd05128 2 YYQPLRDLLLESVDVGPISASAAAILEEVCR-EERQDVAVPLVKLFLGQGLIVPFLDALAQLELKRTQDPNTLFRGNSLA 80 (315)
T ss_pred CcHHHHHHHHcccccCCCChhHHHHHHHhCc-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHhHHhcCCcHH
Confidence 48899999874332 22 5668899999999 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHH
Q psy14861 1009 SKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSM 1088 (1648)
Q Consensus 1009 Tkll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~I 1088 (1648)
||+++.|+|..|++||+++|+|+|++|+++ +.++|+||.|++.++.+++|+++|+.+++++|++|++|++.||+++|+|
T Consensus 81 TK~~~~y~r~~G~~YL~~~L~pvI~~i~~~-~~~~EiDP~ki~~~~~~e~n~~~L~~~~~~~~~~I~~S~~~~P~~lr~i 159 (315)
T cd05128 81 SKSMEEFMKLAGMHYLHVTLKPIIDKIFEE-KKYCELDPSKVKLGEVLENNRENLRYYLDRLFEAITKSSVSCPTVMCDI 159 (315)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhC-CCCcccChhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999996 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCC----CCc
Q psy14861 1089 CHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF----SKE 1164 (1648)
Q Consensus 1089 c~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F----~KE 1164 (1648)
|+++++.+.++||++++..+.+||||+|||||||||++|+.||+++..|++++||+|++|||+|||+||++.| +||
T Consensus 160 ~~~l~~~v~~kFp~~~~~~~~~V~gfiFLRfi~PAIvsP~~f~l~~~~p~~~~rR~L~lIaKvLQnlaN~~~f~~~~~KE 239 (315)
T cd05128 160 FYQLRERVGERFPGDPDVQYLAVSSFLFLRFFAPAILSPKLFHLRPHHADARTSRTLLLLSKAVQTLGNLGSSAGSSFKE 239 (315)
T ss_pred HHHHHHHHHHHCCCCccchHHHHHHHHHHHHHhHHhcChHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCcCcccCCCCCC
Confidence 9999999999999877667889999999999999999999999999999999999999999999999999876 599
Q ss_pred cccchh--HHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy14861 1165 AHMIPF--NDFLRAHFVIARQFFIQIASDCVTED 1196 (1648)
Q Consensus 1165 ~~m~~l--N~fi~~~~~~~~~fl~~is~~~~~~~ 1196 (1648)
+||.|| |+|++++.+++++|+++++++++.++
T Consensus 240 ~~M~pl~~n~fi~~~~~~~~~fL~~is~v~~~ee 273 (315)
T cd05128 240 QWMAPLFKQPTEEQYVSAVKDFLDRISSTEEREE 273 (315)
T ss_pred HHHhccccChHHHHHHHHHHHHHHHHcCCCChhh
Confidence 999999 99999999999999999998766554
No 19
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=100.00 E-value=6.6e-51 Score=487.15 Aligned_cols=293 Identities=26% Similarity=0.444 Sum_probs=259.9
Q ss_pred cccCChhhHHHHHHHHHHhccccccccc-hhhh--HhhhhHHHHHHHHHhhhcCCchHHHHHHHhhcCchhHHHHHHHHH
Q psy14861 895 GYHQDLQTRAAFMEVLTKILQQGTEFNT-LAET--VLADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFV 971 (1648)
Q Consensus 895 gy~~d~~~R~aFl~v~~~il~~gt~f~~-~~~~--~~~~~ye~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d~la~~Ll 971 (1648)
+-+.+.+.|-++..+-....+.|+.... +.+. ...+.|++|.++|. +.++.++..++.+|+ .+.|++|..|+
T Consensus 14 ~~~~~~e~w~~i~~~~~~~~~~~~llk~~~~~~~VLp~~~Y~~l~~lL~----~~~~~l~~~~~~~~~-~~~~~la~~lv 88 (395)
T cd05137 14 DRGLDKETWLPIFDVDNKSVGEGLIIKVSSEENFVLPSNNYEKLEELLH----RFSLGLTTQISHDSP-GKLRKLSEMFL 88 (395)
T ss_pred cCCCCceeeeccccCCCCCcCcceEEEEEeeeceeccHHHHHHHHHHHh----cCCHHHHHHHHHhCh-HhHHHHHHHHH
Confidence 4445556666666665555566654111 2222 33678999999996 566778889999999 77999999999
Q ss_pred HhhccCCcHHHHHHHHHHHHhhcCC----------------CcccccccCchhHHHHHHHHHHhchHHHHHHHHHhHHHH
Q psy14861 972 TLFDAKHMLPPLLWNMFYREVEVSD----------------CMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPL 1035 (1648)
Q Consensus 972 ~lF~~~~~l~~Ll~~li~~EI~~t~----------------~~~~LfR~NS~~Tkll~~y~r~~G~~YL~~~L~p~i~~i 1035 (1648)
++|.++|...+|+..|++.||+.++ ++++||||||++||+++.|+|..|++||+++|+|+|++|
T Consensus 89 ~if~~~g~~~~~l~~L~~~Ei~~~~~~~~~~~~~~~~~~~~~~ntLFRgNSl~TK~l~~y~r~~G~~YL~~~L~p~I~~I 168 (395)
T cd05137 89 NIFQVSGRADEWLMALIEKEIDGIDKQSTASNLDMGQSSKHEANLLFRGNSLLTKSLELYMRRLGKEYLEKTLGAKIREI 168 (395)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhcchhhhcccccccccccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999863 578999999999999999999999999999999999999
Q ss_pred HhcCCCccccCCCCCCCh------hhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhhCCCCC-Cccc
Q psy14861 1036 LDKAHVAFEVDPARLDPS------ENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQP-QNNI 1108 (1648)
Q Consensus 1036 i~~~~~~~EiDP~ki~~~------e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~kFP~~~-e~~~ 1108 (1648)
++. +.+||+||.|++.+ +.+++|+++|+.++++||++|++|++.||+++|+||+++++.+.++||+.. +..+
T Consensus 169 ~~~-~~~~EiDP~ki~~~~~~e~~~~l~~n~~~L~~~~~~~~~~I~~S~~~~P~~lR~i~~~lr~~v~~kfpd~~~~~~~ 247 (395)
T cd05137 169 NEE-DPSCEVDPSRISEGDEIEKRQIIEHNWERLISLTEEIWKRIANTSNDLPQEIRHILKYIRAKLEDRYGDFLRTVVY 247 (395)
T ss_pred HcC-CCCeeeChhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCchhhHHH
Confidence 984 89999999999876 789999999999999999999999999999999999999999999999753 3357
Q ss_pred hhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCCC-CccccchhHHHHHHHHHHHHHHHHH
Q psy14861 1109 GAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIARQFFIQ 1187 (1648)
Q Consensus 1109 ~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F~-KE~~m~~lN~fi~~~~~~~~~fl~~ 1187 (1648)
.+||||+|||||||||++|+.||++..+|++++||+|++|||+|||+||++.|+ ||+||.|+|+|+.++.+++++|+++
T Consensus 248 ~~Vg~FiFLRFicPAIvsP~~f~L~~~~p~~~~rRtLtLIAKvLQnLAN~~~f~~KE~~M~~lN~Fi~~~~~~~~~FL~~ 327 (395)
T cd05137 248 NSISGFLFLRFFCPAILNPKLFGLLRDHPQPRAQRTLTLIAKVLQNLANLTNFGKKEPWMEPMNPFIEKHRQELKDYIDK 327 (395)
T ss_pred HHHHHHHHHHHhccccCChhhcCCCcCCCCHHHHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999995 9999999999999999999999999
Q ss_pred hhcCCC
Q psy14861 1188 IASDCV 1193 (1648)
Q Consensus 1188 is~~~~ 1193 (1648)
|++.+.
T Consensus 328 is~v~~ 333 (395)
T cd05137 328 ICSIKL 333 (395)
T ss_pred HcCCCc
Confidence 987543
No 20
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=100.00 E-value=1.2e-50 Score=484.99 Aligned_cols=293 Identities=26% Similarity=0.438 Sum_probs=263.5
Q ss_pred cccCChhhhHHHHHHHHHhhhhccc-cchhhhh--HHHHHHHHHHHHHHhhccCCchHHHHHHHHhcCcccHHHHHHHHH
Q psy14861 253 GYRQDLQTRAAFMEVLTKILQQGTE-FNTLAET--VLADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFV 329 (1648)
Q Consensus 253 gy~~d~~~R~aFl~v~~~il~~g~~-~~~l~~~--~~~~~ye~l~~Ll~~~~~~~~l~~~~~l~~~~~~~~~d~la~~ll 329 (1648)
+-+.+.+.|-+++.+-....+.|+. --...+. .+.+.|+.|.++|. ..++.++..++.+|+ .+.|++|..++
T Consensus 14 ~~~~~~e~w~~i~~~~~~~~~~~~llk~~~~~~~VLp~~~Y~~l~~lL~----~~~~~l~~~~~~~~~-~~~~~la~~lv 88 (395)
T cd05137 14 DRGLDKETWLPIFDVDNKSVGEGLIIKVSSEENFVLPSNNYEKLEELLH----RFSLGLTTQISHDSP-GKLRKLSEMFL 88 (395)
T ss_pred cCCCCceeeeccccCCCCCcCcceEEEEEeeeceeccHHHHHHHHHHHh----cCCHHHHHHHHHhCh-HhHHHHHHHHH
Confidence 5566777888888877777777776 1112233 34689999999886 466777888999999 68999999999
Q ss_pred HhhccCCChHHHHHHHHHHHHhccC----------------CcccccccCchhHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q psy14861 330 TLFDAKHMLPPLLWNMFYREVEVSD----------------CMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPL 393 (1648)
Q Consensus 330 ~lF~~~~~l~~LL~~Li~~EI~~t~----------------~~~tLfR~NS~~tkll~~y~r~~G~~YL~~~L~p~i~~I 393 (1648)
++|.+.|++.+++..|++.||+.++ .+++||||||++||+++.|+|..|++||+++|+|+|++|
T Consensus 89 ~if~~~g~~~~~l~~L~~~Ei~~~~~~~~~~~~~~~~~~~~~~ntLFRgNSl~TK~l~~y~r~~G~~YL~~~L~p~I~~I 168 (395)
T cd05137 89 NIFQVSGRADEWLMALIEKEIDGIDKQSTASNLDMGQSSKHEANLLFRGNSLLTKSLELYMRRLGKEYLEKTLGAKIREI 168 (395)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhcchhhhcccccccccccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998763 478999999999999999999999999999999999999
Q ss_pred hccCCCccccCCCCCCCh------hhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhHCCCCC-cccc
Q psy14861 394 LDKAHVAFEVDPARLDPS------ENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQP-QNNI 466 (1648)
Q Consensus 394 i~~~~~~~EiDP~ki~~~------e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~rFp~~~-~~~~ 466 (1648)
+++ +.+||+||.|+.++ +.+++|+++|+.++++||++|++|++.||+++|+||+++++.+.++||+.. +..+
T Consensus 169 ~~~-~~~~EiDP~ki~~~~~~e~~~~l~~n~~~L~~~~~~~~~~I~~S~~~~P~~lR~i~~~lr~~v~~kfpd~~~~~~~ 247 (395)
T cd05137 169 NEE-DPSCEVDPSRISEGDEIEKRQIIEHNWERLISLTEEIWKRIANTSNDLPQEIRHILKYIRAKLEDRYGDFLRTVVY 247 (395)
T ss_pred HcC-CCCeeeChhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCchhhHHH
Confidence 975 58999999999877 789999999999999999999999999999999999999999999999874 4457
Q ss_pred hhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccccC-ccccCcchHHHHHHhHHHHHHHHHH
Q psy14861 467 GAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIARQFFIQ 545 (1648)
Q Consensus 467 ~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m~~lN~fi~~~~~~~~~fl~~ 545 (1648)
.+||||+|||||||||++|+.||+++.+|++++||+|++|||+||++||++.|+ ||+||.|+|+|+.++.+++++||++
T Consensus 248 ~~Vg~FiFLRFicPAIvsP~~f~L~~~~p~~~~rRtLtLIAKvLQnLAN~~~f~~KE~~M~~lN~Fi~~~~~~~~~FL~~ 327 (395)
T cd05137 248 NSISGFLFLRFFCPAILNPKLFGLLRDHPQPRAQRTLTLIAKVLQNLANLTNFGKKEPWMEPMNPFIEKHRQELKDYIDK 327 (395)
T ss_pred HHHHHHHHHHHhccccCChhhcCCCcCCCCHHHHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999996 9999999999999999999999999
Q ss_pred hhcCCC
Q psy14861 546 IASDCV 551 (1648)
Q Consensus 546 i~~~~~ 551 (1648)
|++.+.
T Consensus 328 is~v~~ 333 (395)
T cd05137 328 ICSIKL 333 (395)
T ss_pred HcCCCc
Confidence 987653
No 21
>smart00323 RasGAP GTPase-activator protein for Ras-like GTPases. All alpha-helical domain that accelerates the GTPase activity of Ras, thereby "switching" it into an "off" position. Improved domain limits from structure.
Probab=100.00 E-value=2.4e-49 Score=475.55 Aligned_cols=314 Identities=37% Similarity=0.582 Sum_probs=277.3
Q ss_pred hhhHHHHHHHHHhhhcCCchHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCchh
Q psy14861 929 ADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLG 1008 (1648)
Q Consensus 929 ~~~ye~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~ 1008 (1648)
.++|++++.|+.. .+...++.+++++|+..+.+++|..|+++|.++|...++++.++..||+++++.+++|||||++
T Consensus 23 ~~~~e~~~~l~~~---~~~~~~~~~l~~~~~~~~~~~~~~~Lv~~f~~~~~~~~~L~~li~~Ei~~~~~~~~lfR~Nsl~ 99 (344)
T smart00323 23 SEYYEELLELLLF---SLDLSLASALSEVCSGLDKDELATKLVRLFLRRGRGHPFLRALIDPEVERTDDPNTIFRGNSLA 99 (344)
T ss_pred HHHHHHHHHHHhc---CchHHHHHHHHHhCChHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHcCCcHhhHhhhccHh
Confidence 5679999888862 2225688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHH
Q psy14861 1009 SKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSM 1088 (1648)
Q Consensus 1009 Tkll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~I 1088 (1648)
||+++.|+|..|++||+.+++|++.++++. +.+||+||.|+. ++.+++|.++|+.++++++++|++|++.||+++|+|
T Consensus 100 tk~l~~y~k~~g~~yL~~~l~~~i~~i~~~-~~~~e~dp~k~~-~~~~~~n~~~L~~~~~~~~~~I~~s~~~~P~~lr~i 177 (344)
T smart00323 100 TKSMEVYMKLVGNQYLHTTLKPVLKKIVES-KKSCEVDPAKLE-GEDLETNLENLLQYVERLFDAIINSSDRLPYGLRDI 177 (344)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCCCCcChhhcC-hhhHHHHHHHHHHHHHHHHHHHHHhHHhCcHHHHHH
Confidence 999999999999999999999999999995 679999999997 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCC-CCcccc
Q psy14861 1089 CHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF-SKEAHM 1167 (1648)
Q Consensus 1089 c~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F-~KE~~m 1167 (1648)
|+++++.+.++||++ +..+.+||||+|||||||||++|+.||+++..|++++||+|++|||+||++||++.| +||+||
T Consensus 178 ~~~l~~~~~~kfp~~-~~~~~~v~~fiFLRfi~PAIvsP~~~~l~~~~~~~~~rr~L~liaKvLQ~lan~~~f~~ke~~m 256 (344)
T smart00323 178 CKQLRQAAEKRFPDA-DVIYKAVSSFVFLRFFCPAIVSPKLFNLVDEHPDPTTRRTLTLIAKVLQNLANLSEFGSKEPWM 256 (344)
T ss_pred HHHHHHHHHHHCCCc-ccchhHHHHHHHHHHhhhHhCChHhhCCCCCCCChhhhhhHHHHHHHHHHHhCCCCCCCcchHH
Confidence 999999999999986 567899999999999999999999999999999999999999999999999999999 499999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCCC-CCCcCCCcccccchhhHHHHHHHHHHHHHHHhhhhccCccccccCCCccchHH
Q psy14861 1168 IPFNDFLRAHFVIARQFFIQIASDCV-TEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMA 1246 (1648)
Q Consensus 1168 ~~lN~fi~~~~~~~~~fl~~is~~~~-~~~~~~~~~~~i~~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~~~~~~~D~L~ 1246 (1648)
.|+|+|+.++.+++++|+.+++++++ ..++.. .....+.+|+..+|+++++|++.|++...+ +.+++.+.
T Consensus 257 ~~ln~fi~~~~~~~~~fl~~i~~~~~~~~d~~~-~~~~~~~~ei~~~h~ll~~~~~~i~~~~~~--------~~~l~~~~ 327 (344)
T smart00323 257 EPLNDFLLSHKDRVKDFLDELSSVPEILVDKVS-DSTTISGRELSLLHSLLLENGDALKRELNN--------EDPLGKLL 327 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccccccc-hhhhcchhhHHHhhHHHHHHHHHHHhhhcc--------cCcHHHHH
Confidence 99999999999999999999998765 222211 112234789999999999999999864332 22444444
Q ss_pred HHHhhcCCCCC
Q psy14861 1247 TLLAYLGPPEH 1257 (1648)
Q Consensus 1247 ~lL~~LG~P~~ 1257 (1648)
..+.++|.+++
T Consensus 328 ~~l~~~~~~~~ 338 (344)
T smart00323 328 FKLRYFGLTTH 338 (344)
T ss_pred HHHHHhcCCcc
Confidence 55555555554
No 22
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=100.00 E-value=1.1e-49 Score=467.62 Aligned_cols=262 Identities=28% Similarity=0.414 Sum_probs=237.8
Q ss_pred hHHHHHHHHHhhhcCC----chHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCc
Q psy14861 931 RFEELVKLVTLISDKG----ELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNS 1006 (1648)
Q Consensus 931 ~ye~L~~Ll~~l~~~~----~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS 1006 (1648)
.|++|.+|+..-.+.+ ...++..|.++|++++.+++|..|+.+|.++|.+.+|++.++++||+.+.+.++||||||
T Consensus 2 ~y~~l~~ll~~~~~~~~~~~~~~~~~~L~ev~~~~~~~~~a~~LV~~f~~~~~~~~ll~~li~~Ev~~~~~~~tlfR~NS 81 (333)
T cd05135 2 YYQPLIHLLVESVQAPAEVEDSSALALLEEVTTVESRQDVAMKLVKIFLGQGLAVPFLDYLNTREVQRTTDPNTLFRSNS 81 (333)
T ss_pred chHHHHHHHHhcccccccccchHHHHHHHhhcChHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCHhHHhhcCc
Confidence 3888888886443221 223678889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCC--------------hhhHHHHHHHHHHHHHHHHH
Q psy14861 1007 LGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP--------------SENIENNRRELISWTKKVFD 1072 (1648)
Q Consensus 1007 ~~Tkll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~--------------~e~~~~N~~~L~~~~~~~l~ 1072 (1648)
+|||+|+.|+|..|+.||+++|+|+|++|+++ +.+||+||.|++. ++..+.|.++|+.+++++|+
T Consensus 82 laTK~m~~y~k~~G~~YL~~~L~p~I~~Ii~~-~~~~EiDP~ki~~~~~~~i~~~~a~~~~e~~e~~i~~L~~~~~~~~~ 160 (333)
T cd05135 82 LASKSMEQFMKVVGMPHLHEPLLPEISKPFEE-KKYIELDPCKIDLNRRRRISFKGAVSEEEVRESSLEMLQGYLSSITD 160 (333)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcccccCHHHcccccccccccccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999995 7899999999863 24467889999999999999
Q ss_pred HHHhhcccCCHHHHHHHHHHHHHHHhhCCCCCC--ccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHH
Q psy14861 1073 AIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQ--NNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSK 1150 (1648)
Q Consensus 1073 ~I~~S~~~~P~~lR~Ic~~i~~~v~~kFP~~~e--~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaK 1150 (1648)
+|++|+++||+++|+||++|++.+.+|||++.+ ..+.+||||+|||||||||++|+.||+++..|++++||+|++|||
T Consensus 161 ~I~~S~~~~P~~lR~i~~~l~~~v~~kFp~~~~~~~~~~~Vg~fiFLRFi~PAIvsP~~f~l~~~~~~~~~rR~L~lIAK 240 (333)
T cd05135 161 AIVGSVSQCPPVMRLTFKQLHKRVEERFPEAENQDVKYLAISGFLFLRFFAPAILTPKLFQLREQHADPRTSRTLLLLAK 240 (333)
T ss_pred HHHhhHHhCCHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHHHhccccCCccccCccCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999997543 236899999999999999999999999999999999999999999
Q ss_pred HHHHhhccC-CCC--CccccchhHHHHHHHHHHHHHHHHHhhcCCC
Q psy14861 1151 ILQNIANHV-EFS--KEAHMIPFNDFLRAHFVIARQFFIQIASDCV 1193 (1648)
Q Consensus 1151 vLQnlAN~~-~F~--KE~~m~~lN~fi~~~~~~~~~fl~~is~~~~ 1193 (1648)
||||+||+. .|+ ||+||.|||+|+.++.+++++|+++++++.+
T Consensus 241 vLQnlAN~~~~f~~~KE~~M~pln~Fi~~~~~~v~~FL~~l~~V~~ 286 (333)
T cd05135 241 AVQSIGNLGQQLGQGKEQWMAPLHPFIRQSVARVRDFLDRLIDIDH 286 (333)
T ss_pred HHHHHHccCCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999954 453 8999999999999999999999999987543
No 23
>smart00323 RasGAP GTPase-activator protein for Ras-like GTPases. All alpha-helical domain that accelerates the GTPase activity of Ras, thereby "switching" it into an "off" position. Improved domain limits from structure.
Probab=100.00 E-value=7.5e-49 Score=471.34 Aligned_cols=314 Identities=36% Similarity=0.577 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccCCcccccccCchh
Q psy14861 287 ADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLG 366 (1648)
Q Consensus 287 ~~~ye~l~~Ll~~~~~~~~l~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~~~~tLfR~NS~~ 366 (1648)
.+.||+++.|+..- +...++.+++++|+..+.++++..|+++|.++|+..++++.++..||+.+++.+++|||||++
T Consensus 23 ~~~~e~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~~~~Lv~~f~~~~~~~~~L~~li~~Ei~~~~~~~~lfR~Nsl~ 99 (344)
T smart00323 23 SEYYEELLELLLFS---LDLSLASALSEVCSGLDKDELATKLVRLFLRRGRGHPFLRALIDPEVERTDDPNTIFRGNSLA 99 (344)
T ss_pred HHHHHHHHHHHhcC---chHHHHHHHHHhCChHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHcCCcHhhHhhhccHh
Confidence 57889888887642 225678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHH
Q psy14861 367 SKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSM 446 (1648)
Q Consensus 367 tkll~~y~r~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~I 446 (1648)
||+++.|++..|+.||+++++|++.++++.+ .+||+||.|+. ++.+++|.++|+.++++|+++|++|++.||+++|+|
T Consensus 100 tk~l~~y~k~~g~~yL~~~l~~~i~~i~~~~-~~~e~dp~k~~-~~~~~~n~~~L~~~~~~~~~~I~~s~~~~P~~lr~i 177 (344)
T smart00323 100 TKSMEVYMKLVGNQYLHTTLKPVLKKIVESK-KSCEVDPAKLE-GEDLETNLENLLQYVERLFDAIINSSDRLPYGLRDI 177 (344)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CCCCcChhhcC-hhhHHHHHHHHHHHHHHHHHHHHHhHHhCcHHHHHH
Confidence 9999999999999999999999999999864 69999999987 578999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccccC-ccccC
Q psy14861 447 CHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHM 525 (1648)
Q Consensus 447 c~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m 525 (1648)
|+++++.+.++||++ +..+.+||+|+|||||||||++|+.||+++..|++++||+|++|||+||++||++.|+ ||+||
T Consensus 178 ~~~l~~~~~~kfp~~-~~~~~~v~~fiFLRfi~PAIvsP~~~~l~~~~~~~~~rr~L~liaKvLQ~lan~~~f~~ke~~m 256 (344)
T smart00323 178 CKQLRQAAEKRFPDA-DVIYKAVSSFVFLRFFCPAIVSPKLFNLVDEHPDPTTRRTLTLIAKVLQNLANLSEFGSKEPWM 256 (344)
T ss_pred HHHHHHHHHHHCCCc-ccchhHHHHHHHHHHhhhHhCChHhhCCCCCCCChhhhhhHHHHHHHHHHHhCCCCCCCcchHH
Confidence 999999999999987 5678999999999999999999999999999999999999999999999999999995 99999
Q ss_pred cchHHHHHHhHHHHHHHHHHhhcCCC-CcCCCCCCCcccChHHHHHHHHHHHHHHHHHhhhhccCccccccCCCCcchHH
Q psy14861 526 IPFNDFLRAHFVIARQFFIQIASDCV-TEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMA 604 (1648)
Q Consensus 526 ~~lN~fi~~~~~~~~~fl~~i~~~~~-~e~~~~~~~~~is~~ei~~LHr~L~~~~~~I~~~L~~~~~~~~~~~~~fD~l~ 604 (1648)
.|+|+|+.++.+++++|+.+++++++ ..+...+ ......+|+..+|+++++|.++|++...+ +.+++.+.
T Consensus 257 ~~ln~fi~~~~~~~~~fl~~i~~~~~~~~d~~~~-~~~~~~~ei~~~h~ll~~~~~~i~~~~~~--------~~~l~~~~ 327 (344)
T smart00323 257 EPLNDFLLSHKDRVKDFLDELSSVPEILVDKVSD-STTISGRELSLLHSLLLENGDALKRELNN--------EDPLGKLL 327 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccccccch-hhhcchhhHHHhhHHHHHHHHHHHhhhcc--------cCcHHHHH
Confidence 99999999999999999999998764 2221111 11233789999999999999999964333 23444444
Q ss_pred HHHhhcCCCCC
Q psy14861 605 TLLAYLGPPEH 615 (1648)
Q Consensus 605 ~lL~~LG~P~~ 615 (1648)
..+.++|+|++
T Consensus 328 ~~l~~~~~~~~ 338 (344)
T smart00323 328 FKLRYFGLTTH 338 (344)
T ss_pred HHHHHhcCCcc
Confidence 44444455543
No 24
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=100.00 E-value=3.5e-49 Score=463.49 Aligned_cols=264 Identities=28% Similarity=0.405 Sum_probs=239.8
Q ss_pred HHHHHHHHHHhhccCCc----hHHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccCCcccccccCc
Q psy14861 289 RFEELVKLVTLISDKGE----LSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNS 364 (1648)
Q Consensus 289 ~ye~l~~Ll~~~~~~~~----l~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~~~~tLfR~NS 364 (1648)
.|..|.+|+....+.+. -+++..|.++|++++.+++|..|+.+|.++|.+.+||..++++||+.+.+++++|||||
T Consensus 2 ~y~~l~~ll~~~~~~~~~~~~~~~~~~L~ev~~~~~~~~~a~~LV~~f~~~~~~~~ll~~li~~Ev~~~~~~~tlfR~NS 81 (333)
T cd05135 2 YYQPLIHLLVESVQAPAEVEDSSALALLEEVTTVESRQDVAMKLVKIFLGQGLAVPFLDYLNTREVQRTTDPNTLFRSNS 81 (333)
T ss_pred chHHHHHHHHhcccccccccchHHHHHHHhhcChHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCHhHHhhcCc
Confidence 36778888876655431 24778899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCC--------------hhhHHHHHHHHHHHHHHHHH
Q psy14861 365 LGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP--------------SENIENNRRELISWTKKVFD 430 (1648)
Q Consensus 365 ~~tkll~~y~r~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~--------------~e~ie~n~~~L~~~~~~~l~ 430 (1648)
+|||+|+.|+|..|+.||+++|+|+|++|+++ +.+||+||.|++. ++..+.|+++|+.+++++++
T Consensus 82 laTK~m~~y~k~~G~~YL~~~L~p~I~~Ii~~-~~~~EiDP~ki~~~~~~~i~~~~a~~~~e~~e~~i~~L~~~~~~~~~ 160 (333)
T cd05135 82 LASKSMEQFMKVVGMPHLHEPLLPEISKPFEE-KKYIELDPCKIDLNRRRRISFKGAVSEEEVRESSLEMLQGYLSSITD 160 (333)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcccccCHHHcccccccccccccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999996 4799999999863 24467899999999999999
Q ss_pred HHHhhcccCCHHHHHHHHHHHHHHHhHCCCCC--cccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHH
Q psy14861 431 AIIDSADNFPPQLRSMCHCLYQVLSKRFPLQP--QNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSK 508 (1648)
Q Consensus 431 ~I~~S~~~~P~~lR~Ic~~i~~~v~~rFp~~~--~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaK 508 (1648)
+|++|++.||++||+||++|++.+.++||++. +..+.+||||+|||||||||++|+.||+++.+|++++||||++|||
T Consensus 161 ~I~~S~~~~P~~lR~i~~~l~~~v~~kFp~~~~~~~~~~~Vg~fiFLRFi~PAIvsP~~f~l~~~~~~~~~rR~L~lIAK 240 (333)
T cd05135 161 AIVGSVSQCPPVMRLTFKQLHKRVEERFPEAENQDVKYLAISGFLFLRFFAPAILTPKLFQLREQHADPRTSRTLLLLAK 240 (333)
T ss_pred HHHhhHHhCCHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHHHhccccCCccccCccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999864 3346899999999999999999999999999999999999999999
Q ss_pred HhHHhhccc-ccC--ccccCcchHHHHHHhHHHHHHHHHHhhcCCCCc
Q psy14861 509 ILQNIANHV-EFS--KEAHMIPFNDFLRAHFVIARQFFIQIASDCVTE 553 (1648)
Q Consensus 509 vLQnlAN~~-~f~--KE~~m~~lN~fi~~~~~~~~~fl~~i~~~~~~e 553 (1648)
||||+||+. .|+ ||+||+|||+|+.++.+++++|+++++++...+
T Consensus 241 vLQnlAN~~~~f~~~KE~~M~pln~Fi~~~~~~v~~FL~~l~~V~~~~ 288 (333)
T cd05135 241 AVQSIGNLGQQLGQGKEQWMAPLHPFIRQSVARVRDFLDRLIDIDHDI 288 (333)
T ss_pred HHHHHHccCCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 999999964 453 999999999999999999999999998765444
No 25
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=100.00 E-value=4.8e-49 Score=464.52 Aligned_cols=268 Identities=25% Similarity=0.435 Sum_probs=245.3
Q ss_pred CCcHHHHHHHHHHHHhhc-CCCcccccccCchhHHHHHHHHH-HhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCC--
Q psy14861 977 KHMLPPLLWNMFYREVEV-SDCMQTLFRGNSLGSKLMAFCFK-IYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP-- 1052 (1648)
Q Consensus 977 ~~~l~~Ll~~li~~EI~~-t~~~~~LfR~NS~~Tkll~~y~r-~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~-- 1052 (1648)
++++++||+.+++.||+. +++.++++|+||+|+|+|..|.| ..|+.||+++|+|+|++|++++++++|+||.+|+.
T Consensus 7 E~lLLklf~~~l~~Ei~~~~~~~~dllr~Ns~~~km~~~y~r~~~g~~yLk~vL~p~I~~iie~~dLdlE~dP~~Iy~~~ 86 (360)
T cd05133 7 EYLLLRLFKTALQEEIKSKVDQIQEIVTGNPTVIKMVVSFNRGARGQNALRQILAPVVKEIMDDKSLNIKTDPVDIYKSW 86 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHhccCcHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhcCcccCccCCHHHHHHHH
Confidence 378999999999999997 78899999999999999999999 59999999999999999999989999999987751
Q ss_pred -----------------------------hhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhhCCCC
Q psy14861 1053 -----------------------------SENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQ 1103 (1648)
Q Consensus 1053 -----------------------------~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~kFP~~ 1103 (1648)
.+.++.|+.+|+.+|+.|+++|++|+++||+++|+||++|++++.+|||++
T Consensus 87 in~~E~~tG~~S~~~~~v~~e~A~~~peV~~~~~~~l~~Lr~i~~~fl~~I~~S~~~~P~~iR~ick~i~~~~~~kFP~~ 166 (360)
T cd05133 87 VNQMESQTGEASKLPYDVTPEQALSHEEVRTRLDASIRNMRTVTDKFLSAIVSSVDKIPYGMRFIAKVLKDSLHEKFPDA 166 (360)
T ss_pred HHHHHHhcCCcCCCCCCCCHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHHHHHHHHHHHHHHCCCC
Confidence 123678999999999999999999999999999999999999999999987
Q ss_pred CCcc-chhHHHHHHhHhhhhhccCCcccCCcc----CCCChhhhhhhHHHHHHHHHhhccCCCC-CccccchhHHHHHHH
Q psy14861 1104 PQNN-IGAVGTVIFLRFINPAIVTPQEMGIIN----KTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAH 1177 (1648)
Q Consensus 1104 ~e~~-~~aVg~fiFLRFicPAIvsPe~fgl~~----~~p~~~~rR~L~liaKvLQnlAN~~~F~-KE~~m~~lN~fi~~~ 1177 (1648)
++.. +.+||+|+|+|||||||++|+.||+++ ..+++.+||||++|||||||+||+..|+ ||+||+|||+||.++
T Consensus 167 ~~~~i~~~vG~fiflRfi~PAIvsPe~~~ii~~~~~~~~~~~~rrnL~~iaKvLQ~lan~~~f~~~e~~m~pLN~fI~~~ 246 (360)
T cd05133 167 GEDELLKIVGNLLYYRYMNPAIVAPDAFDIIDLSAGGQLTTDQRRNLGSIAKMLQHAASNKMFLGDNAHLSIINEYLSQS 246 (360)
T ss_pred chhhHHHHHHHHHHHHhccccccCchhcCccccccCCCCCHHHHhhHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHH
Confidence 6544 579999999999999999999999997 4579999999999999999999999996 888999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCc-----------CCCcccccchhhHHHHHHHHHHHHHHHhhhhccCccccccCCCccchHH
Q psy14861 1178 FVIARQFFIQIASDCVTEDA-----------GAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMA 1246 (1648)
Q Consensus 1178 ~~~~~~fl~~is~~~~~~~~-----------~~~~~~~i~~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~~~~~~~D~L~ 1246 (1648)
.+++++|+.+++.+++.++. ..+|..+|+.+|++.+|++|++|++.|++ .+.|+|+
T Consensus 247 ~~~~~~fl~~~~~V~d~ee~~~~dey~dl~~~~kP~l~Is~~eI~~~H~Ll~~~~d~iap-------------~~~D~L~ 313 (360)
T cd05133 247 YQKFRRFFQSACEVPELQDKFNVDEYSDLVTLTKPVIYISIGEIINTHTLLLDHQDAIAP-------------EHNDPIH 313 (360)
T ss_pred HHHHHHHHHHhCCCCCHHHhcChhHHHHHHhccCCeEEeeHHHHHHHHHHHHHhHHhhCC-------------CCCChHH
Confidence 99999999999988776542 45788999999999999999999999983 2569999
Q ss_pred HHHhhcCCCCC
Q psy14861 1247 TLLAYLGPPEH 1257 (1648)
Q Consensus 1247 ~lL~~LG~P~~ 1257 (1648)
.+|++||++|.
T Consensus 314 ~il~~LG~~p~ 324 (360)
T cd05133 314 ELLDDLGEVPT 324 (360)
T ss_pred HHHHHhcCCCc
Confidence 99999999985
No 26
>cd05132 RasGAP_GAPA GAPA is an IQGAP-related protein and is predicted to bind to small GTPases, which are yet to be identified. IQGAP proteins are integral components of cytoskeletal regulation. Results from truncated GAPAs indicated that almost the entire region of GAPA homologous to IQGAP is required for cytokinesis in Dictyostelium. More members of the IQGAP family are emerging, and evidence suggests that there are both similarities and differences in their function.
Probab=100.00 E-value=5.9e-49 Score=466.87 Aligned_cols=269 Identities=25% Similarity=0.453 Sum_probs=246.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-hchHHHHHHHHHhHHHHHhcCCCccccCCCCCCC---
Q psy14861 977 KHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKI-YGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP--- 1052 (1648)
Q Consensus 977 ~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~Tkll~~y~r~-~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~--- 1052 (1648)
++++++|++.+++.||+++++++++|||||+|+|+++.|+|. .|+.||+++|+|+|++++++++++||+||.+++.
T Consensus 7 e~lLLkl~~~~l~~Ei~~~~~~~~l~R~Ns~~~k~l~~y~r~~~g~~yL~~~L~p~i~~ii~~~~l~lE~DP~kiy~~~i 86 (331)
T cd05132 7 EHLLLSLFQLVLQQEFSTITSVGSLLRANTVVPRMITTYTRRGPGQSYLKSVLAPCLNDVVIHKDLNLELNPLKVYENMI 86 (331)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHhcCCchHHHHHHHHHcCcccHHHHHHHHHHHHHHHHcCCCCCeeCCHHHHHHHHH
Confidence 378999999999999999999999999999999999999985 8999999999999999998889999999999841
Q ss_pred ------------------h----------hhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhhCCCCC
Q psy14861 1053 ------------------S----------ENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQP 1104 (1648)
Q Consensus 1053 ------------------~----------e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~kFP~~~ 1104 (1648)
. +.++.|+++|+.+|++|+++|++|+++||+++||||+++++.+.++||+.+
T Consensus 87 ~~~e~~~g~~s~~~~~~t~e~a~~~~ev~~~~~~~l~~L~~~~~~fl~~I~~s~~~~P~~lR~i~~~l~~~~~~kfp~~~ 166 (331)
T cd05132 87 NEQEIATGEKSNLPRGVSPEKAQENPEVKKIIKPRVTQLIEICNRFLDTIISSLNRLPYGIRWICKQIRSLTKRKFPSAT 166 (331)
T ss_pred HhHHhhcCCCCcCCCCCCHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCCC
Confidence 1 124568999999999999999999999999999999999999999999866
Q ss_pred Ccc-chhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCCC-CccccchhHHHHHHHHHHHH
Q psy14861 1105 QNN-IGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIAR 1182 (1648)
Q Consensus 1105 e~~-~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F~-KE~~m~~lN~fi~~~~~~~~ 1182 (1648)
+.. +.+||+|+|+|||||||++|+.||+++..|++.+||+|++||||||++||+..|+ ||+||.|||+|+.++.++++
T Consensus 167 ~~~~~~~vg~flflRfi~PAIvsP~~fgl~~~~~~~~~rrnL~lIaKvLQ~lan~~~f~~ke~~m~pLn~fi~~~~~~~~ 246 (331)
T cd05132 167 DAEICSLIGYFFFLRFINPAIVTPQAYMLVDGEPSDTARKNLTLIAKMLQNLANKPSFGDKEKWMVPLNPWIDENKEKVN 246 (331)
T ss_pred HHHHHHHHHHHHHHHHhhHHhcCchhcCCcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 544 5799999999999999999999999998899999999999999999999999996 99999999999999999999
Q ss_pred HHHHHhhcCCCCCCc-----------CCCcccccchhhHHHHHHHHHHHHHHHhhhhccCccccccCCCccchHHHHHhh
Q psy14861 1183 QFFIQIASDCVTEDA-----------GAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLLAY 1251 (1648)
Q Consensus 1183 ~fl~~is~~~~~~~~-----------~~~~~~~i~~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~~~~~~~D~L~~lL~~ 1251 (1648)
+|+.+++++++.++. ..+|..+|+.+|++.+|+++++|.+.|++ .+.|+|+.+|.+
T Consensus 247 ~fl~~l~~v~~~e~~~~~d~y~dl~~~~~p~l~I~~~ei~~~h~ll~~~~~~~~~-------------~~~D~L~~il~~ 313 (331)
T cd05132 247 NFLEELTEVGDPEEYLQVDKYMALSKKVDPTILITLNEIYNTHSLILKHLLDLAP-------------DKEDPLRIILDE 313 (331)
T ss_pred HHHHHHhCCCCHHHhcCHhHHHHHHhccCCeEEeeHHHHHHHHHHHHHHHHHhCC-------------CCCCcHHHHHHH
Confidence 999999988776542 34788999999999999999999999973 256999999999
Q ss_pred cCCCCCC
Q psy14861 1252 LGPPEHK 1258 (1648)
Q Consensus 1252 LG~P~~~ 1258 (1648)
||+||+.
T Consensus 314 lg~~~~~ 320 (331)
T cd05132 314 LGAPPPQ 320 (331)
T ss_pred hCCCccc
Confidence 9999854
No 27
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=100.00 E-value=8.2e-49 Score=462.57 Aligned_cols=267 Identities=25% Similarity=0.442 Sum_probs=241.5
Q ss_pred ChHHHHHHHHHHHHhc-cCCcccccccCchhHHHHHHHHHH-hhHHHHHHHHHHhHHHHhccCCCccccCCCCCCCh---
Q psy14861 337 MLPPLLWNMFYREVEV-SDCMQTLFRGNSLGSKLMAFCFKI-YGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPS--- 411 (1648)
Q Consensus 337 ~l~~LL~~Li~~EI~~-t~~~~tLfR~NS~~tkll~~y~r~-~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~~--- 411 (1648)
.+++|+...++.||+. +++.++++|+||+|+|||..|.|. .|+.||+++|+|+|++|++++++++|+||.+|+..
T Consensus 9 lLLklf~~~l~~Ei~~~~~~~~dllr~Ns~~~km~~~y~r~~~g~~yLk~vL~p~I~~iie~~dLdlE~dP~~Iy~~~in 88 (360)
T cd05133 9 LLLRLFKTALQEEIKSKVDQIQEIVTGNPTVIKMVVSFNRGARGQNALRQILAPVVKEIMDDKSLNIKTDPVDIYKSWVN 88 (360)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHhccCcHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHH
Confidence 3566777888999997 688999999999999999999985 99999999999999999999999999999877511
Q ss_pred ----------------------------hhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhHCCCCCc
Q psy14861 412 ----------------------------ENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQ 463 (1648)
Q Consensus 412 ----------------------------e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~rFp~~~~ 463 (1648)
+.++.|+++|+.+|++|+++|++|+++||+++||||+++++++.+|||++++
T Consensus 89 ~~E~~tG~~S~~~~~v~~e~A~~~peV~~~~~~~l~~Lr~i~~~fl~~I~~S~~~~P~~iR~ick~i~~~~~~kFP~~~~ 168 (360)
T cd05133 89 QMESQTGEASKLPYDVTPEQALSHEEVRTRLDASIRNMRTVTDKFLSAIVSSVDKIPYGMRFIAKVLKDSLHEKFPDAGE 168 (360)
T ss_pred HHHHhcCCcCCCCCCCCHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHHHHHHHHHHHHHHCCCCch
Confidence 1246889999999999999999999999999999999999999999999875
Q ss_pred cc-chhHHHHHHHHhhhccccCCcccCCcc----CCCChhhhhhhHHHHHHhHHhhcccccC-ccccCcchHHHHHHhHH
Q psy14861 464 NN-IGAVGTVIFLRFINPAIVTPQEMGIIN----KTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFV 537 (1648)
Q Consensus 464 ~~-~~aVg~fiFLRFi~PAIvsPe~fglv~----~~~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m~~lN~fi~~~~~ 537 (1648)
.. +.+||+|+|+||||||||+|+.||+++ ..+++.+||||++|||||||+|||..|+ ||+||+|||+||.++.+
T Consensus 169 ~~i~~~vG~fiflRfi~PAIvsPe~~~ii~~~~~~~~~~~~rrnL~~iaKvLQ~lan~~~f~~~e~~m~pLN~fI~~~~~ 248 (360)
T cd05133 169 DELLKIVGNLLYYRYMNPAIVAPDAFDIIDLSAGGQLTTDQRRNLGSIAKMLQHAASNKMFLGDNAHLSIINEYLSQSYQ 248 (360)
T ss_pred hhHHHHHHHHHHHHhccccccCchhcCccccccCCCCCHHHHhhHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHH
Confidence 44 479999999999999999999999997 4578999999999999999999999996 88999999999999999
Q ss_pred HHHHHHHHhhcCCCCcCC-----------CCCCCcccChHHHHHHHHHHHHHHHHHhhhhccCccccccCCCCcchHHHH
Q psy14861 538 IARQFFIQIASDCVTEDA-----------GAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATL 606 (1648)
Q Consensus 538 ~~~~fl~~i~~~~~~e~~-----------~~~~~~~is~~ei~~LHr~L~~~~~~I~~~L~~~~~~~~~~~~~fD~l~~l 606 (1648)
++++||.+++++++.|+. ..+|.+||+.+|++.+|++|++|++.|++ ..+ |+|+.+
T Consensus 249 ~~~~fl~~~~~V~d~ee~~~~dey~dl~~~~kP~l~Is~~eI~~~H~Ll~~~~d~iap----~~~---------D~L~~i 315 (360)
T cd05133 249 KFRRFFQSACEVPELQDKFNVDEYSDLVTLTKPVIYISIGEIINTHTLLLDHQDAIAP----EHN---------DPIHEL 315 (360)
T ss_pred HHHHHHHHhCCCCCHHHhcChhHHHHHHhccCCeEEeeHHHHHHHHHHHHHhHHhhCC----CCC---------ChHHHH
Confidence 999999999998877653 24789999999999999999999999984 333 999999
Q ss_pred HhhcCCCCCC
Q psy14861 607 LAYLGPPEHK 616 (1648)
Q Consensus 607 L~~LG~P~~~ 616 (1648)
|.+||++|..
T Consensus 316 l~~LG~~p~~ 325 (360)
T cd05133 316 LDDLGEVPTI 325 (360)
T ss_pred HHHhcCCCcc
Confidence 9999999853
No 28
>cd05132 RasGAP_GAPA GAPA is an IQGAP-related protein and is predicted to bind to small GTPases, which are yet to be identified. IQGAP proteins are integral components of cytoskeletal regulation. Results from truncated GAPAs indicated that almost the entire region of GAPA homologous to IQGAP is required for cytokinesis in Dictyostelium. More members of the IQGAP family are emerging, and evidence suggests that there are both similarities and differences in their function.
Probab=100.00 E-value=1.5e-48 Score=463.51 Aligned_cols=267 Identities=25% Similarity=0.464 Sum_probs=243.3
Q ss_pred ChHHHHHHHHHHHHhccCCcccccccCchhHHHHHHHHHH-hhHHHHHHHHHHhHHHHhccCCCccccCCCCCCC-----
Q psy14861 337 MLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKI-YGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP----- 410 (1648)
Q Consensus 337 ~l~~LL~~Li~~EI~~t~~~~tLfR~NS~~tkll~~y~r~-~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~----- 410 (1648)
.+.++++.+++.||+++++++++|||||+|+|+++.|+|. .|+.||+++|+|+|++++++++++||+||.+++.
T Consensus 9 lLLkl~~~~l~~Ei~~~~~~~~l~R~Ns~~~k~l~~y~r~~~g~~yL~~~L~p~i~~ii~~~~l~lE~DP~kiy~~~i~~ 88 (331)
T cd05132 9 LLLSLFQLVLQQEFSTITSVGSLLRANTVVPRMITTYTRRGPGQSYLKSVLAPCLNDVVIHKDLNLELNPLKVYENMINE 88 (331)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHhcCCchHHHHHHHHHcCcccHHHHHHHHHHHHHHHHcCCCCCeeCCHHHHHHHHHHh
Confidence 4567888999999999999999999999999999999986 8999999999999999999889999999999841
Q ss_pred ----------------hh----------hHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhHCCCCCcc
Q psy14861 411 ----------------SE----------NIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQN 464 (1648)
Q Consensus 411 ----------------~e----------~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~rFp~~~~~ 464 (1648)
.+ .++.|+++|+.+|++|+++|++|++.||+++||||+++++.+.++||+.++.
T Consensus 89 ~e~~~g~~s~~~~~~t~e~a~~~~ev~~~~~~~l~~L~~~~~~fl~~I~~s~~~~P~~lR~i~~~l~~~~~~kfp~~~~~ 168 (331)
T cd05132 89 QEIATGEKSNLPRGVSPEKAQENPEVKKIIKPRVTQLIEICNRFLDTIISSLNRLPYGIRWICKQIRSLTKRKFPSATDA 168 (331)
T ss_pred HHhhcCCCCcCCCCCCHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 11 1346889999999999999999999999999999999999999999987643
Q ss_pred c-chhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccccC-ccccCcchHHHHHHhHHHHHHH
Q psy14861 465 N-IGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIARQF 542 (1648)
Q Consensus 465 ~-~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m~~lN~fi~~~~~~~~~f 542 (1648)
. +.+||+|+|+|||||||++|+.||+++..+++.+||||++||||||++||+..|+ ||+||+|||+|+.++.+++++|
T Consensus 169 ~~~~~vg~flflRfi~PAIvsP~~fgl~~~~~~~~~rrnL~lIaKvLQ~lan~~~f~~ke~~m~pLn~fi~~~~~~~~~f 248 (331)
T cd05132 169 EICSLIGYFFFLRFINPAIVTPQAYMLVDGEPSDTARKNLTLIAKMLQNLANKPSFGDKEKWMVPLNPWIDENKEKVNNF 248 (331)
T ss_pred HHHHHHHHHHHHHHhhHHhcCchhcCCcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3 4799999999999999999999999998899999999999999999999999996 9999999999999999999999
Q ss_pred HHHhhcCCCCcCC-----------CCCCCcccChHHHHHHHHHHHHHHHHHhhhhccCccccccCCCCcchHHHHHhhcC
Q psy14861 543 FIQIASDCVTEDA-----------GAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLLAYLG 611 (1648)
Q Consensus 543 l~~i~~~~~~e~~-----------~~~~~~~is~~ei~~LHr~L~~~~~~I~~~L~~~~~~~~~~~~~fD~l~~lL~~LG 611 (1648)
|.+++++++.|+. ..+|.++|+.+|++.+|++|.+|.+.+++ ..+ |+|+.+|.+||
T Consensus 249 l~~l~~v~~~e~~~~~d~y~dl~~~~~p~l~I~~~ei~~~h~ll~~~~~~~~~----~~~---------D~L~~il~~lg 315 (331)
T cd05132 249 LEELTEVGDPEEYLQVDKYMALSKKVDPTILITLNEIYNTHSLILKHLLDLAP----DKE---------DPLRIILDELG 315 (331)
T ss_pred HHHHhCCCCHHHhcCHhHHHHHHhccCCeEEeeHHHHHHHHHHHHHHHHHhCC----CCC---------CcHHHHHHHhC
Confidence 9999998877653 23788999999999999999999999974 333 99999999999
Q ss_pred CCCCC
Q psy14861 612 PPEHK 616 (1648)
Q Consensus 612 ~P~~~ 616 (1648)
+||..
T Consensus 316 ~~~~~ 320 (331)
T cd05132 316 APPPQ 320 (331)
T ss_pred CCccc
Confidence 98864
No 29
>cd05131 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP family that contains a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeat, a single WW domain, four IQ motifs which mediate interactions with calmodulin, and a Ras-GTPase-activating protein (GAP)-related domain that binds Rho family GTPases. IQGAP2 and IQGAP3 play important roles in the regulation of the cytoskeleton for axon outgrowth in hippocampal neurons and are thought to stay in a common regulatory pathway. The results of RNA interference studies indicated that IQGAP3 partially compensates functions of IQGAP2, but has lesser ability than IQGAP2 to promote axon outgrowth in hippocampal neuron. Morevover, IQGAP2 is required for the cadherin-mediated cell-to-cell adhesion in Xenopus laevis embryos.
Probab=100.00 E-value=1.4e-47 Score=453.31 Aligned_cols=267 Identities=25% Similarity=0.427 Sum_probs=242.7
Q ss_pred CcHHHHHHHHHHHHhhc-CCCcccccccCchhHHHHHHHHH-HhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCC---
Q psy14861 978 HMLPPLLWNMFYREVEV-SDCMQTLFRGNSLGSKLMAFCFK-IYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP--- 1052 (1648)
Q Consensus 978 ~~l~~Ll~~li~~EI~~-t~~~~~LfR~NS~~Tkll~~y~r-~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~--- 1052 (1648)
+++++|++.+++.||+. +++.++++|+||+|+|++..|.| ..|+.||+++|+|+|+++++++++++|+||.+|+.
T Consensus 8 ~lllkl~~~~l~~Ei~~~~~~~~d~~r~Ns~~~km~~~y~r~~~g~~yLk~lL~p~v~~ii~~~~ldlE~dP~~Iy~~~i 87 (339)
T cd05131 8 YLLLKLFETALREEIKSKVDQIQDIVTGNPTVIKMVVSFNRGARGQNTLRQLLAPVVKEIIEDKSLIINTNPVEVYKAWV 87 (339)
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHhccCcHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhcCcccCCcCCHHHHHHHHH
Confidence 78999999999999997 58899999999999999998887 69999999999999999999989999999998762
Q ss_pred ------------------h----------hhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhhCCCCC
Q psy14861 1053 ------------------S----------ENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQP 1104 (1648)
Q Consensus 1053 ------------------~----------e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~kFP~~~ 1104 (1648)
. +.++.|+++|+.+|++|+++|++|+++||+++||||+++++++.+|||++.
T Consensus 88 ~~~e~~tG~~S~~~~~v~~e~Ai~~pev~~~~~~~l~~L~~~~~~fl~~I~~sv~~~P~~lR~ick~i~~~~~~kFP~~~ 167 (339)
T cd05131 88 NQLETATGEASKLPYDVTTEQALLHPEVRAKLESSIQVLRSVTDKVLGSIMSSLDLIPYGMRYIAKVLKNSLHEKFPDAT 167 (339)
T ss_pred HHHHHhhCCcccCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCCc
Confidence 0 226788999999999999999999999999999999999999999999876
Q ss_pred Ccc-chhHHHHHHhHhhhhhccCCcccCCccC----CCChhhhhhhHHHHHHHHHhhccCCCC-CccccchhHHHHHHHH
Q psy14861 1105 QNN-IGAVGTVIFLRFINPAIVTPQEMGIINK----TVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHF 1178 (1648)
Q Consensus 1105 e~~-~~aVg~fiFLRFicPAIvsPe~fgl~~~----~p~~~~rR~L~liaKvLQnlAN~~~F~-KE~~m~~lN~fi~~~~ 1178 (1648)
+.. +.+||+|+|+|||||||++|+.||+++. .+++.+||||+++|||||++||+..|+ ||+||.|||+|+.++.
T Consensus 168 ~~~~~~~VG~fiflRfi~PAIvsPe~f~ii~~~~~~~~~~~~rrnL~~iaKvLq~lan~~~F~~~e~~m~pLN~fi~~~~ 247 (339)
T cd05131 168 EDELLKIVGNLLYYRYMNPAIVAPDGFDIIDMTAGGQIHSDQRRNLGSVAKVLQHAASNKLFEGENDHLSSMNSYLSQTY 247 (339)
T ss_pred hHHHHHHHHHHHHHHHccchhcCchhcCccccccCCCCCHHHHhhHHHHHHHHHHHHCCCCCCCcChHHHhHHHHHHHHH
Confidence 544 4699999999999999999999999863 458899999999999999999999996 7789999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCc-----------CCCcccccchhhHHHHHHHHHHHHHHHhhhhccCccccccCCCccchHHH
Q psy14861 1179 VIARQFFIQIASDCVTEDA-----------GAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMAT 1247 (1648)
Q Consensus 1179 ~~~~~fl~~is~~~~~~~~-----------~~~~~~~i~~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~~~~~~~D~L~~ 1247 (1648)
+++++|+.+++++++.++. ..+|..+|+.+|++.+|+++.+|++.|++ .+.|+|+.
T Consensus 248 ~~~~~fl~~l~~V~d~e~~~~~d~Y~dl~~~~kP~l~I~~~ei~~ih~ll~~~~~~i~p-------------~~~D~L~~ 314 (339)
T cd05131 248 QKFRKFFQAACDVPEPEEKFNVDEYSDLVTLSKPVIYISIEEIINTHSLLLEHQDAIAP-------------DQNDLLHE 314 (339)
T ss_pred HHHHHHHHHHhcCCCHHHHcChhHHHHHHhccCCeEEeeHHHHHHHHHHHHHHHHHhCC-------------CCCChHHH
Confidence 9999999999998776542 46789999999999999999999999973 25699999
Q ss_pred HHhhcCCCCC
Q psy14861 1248 LLAYLGPPEH 1257 (1648)
Q Consensus 1248 lL~~LG~P~~ 1257 (1648)
+|++||++|.
T Consensus 315 il~~Lg~~~~ 324 (339)
T cd05131 315 LLKDLGVVPD 324 (339)
T ss_pred HHHHcCCCCc
Confidence 9999998774
No 30
>cd05127 RasGAP_IQGAP_related This family represents IQ motif containing GTPase activating protein (IQGAP) which associated with the Ras GTP-binding protein. A primary function of IQGAP proteins is to modulate cytoskeletal architecture. There are three known IQGAP family members: IQGAP1, IQGAP2 and IQGAP3. Human IQGAP1 and IQGAP2 share 62% indentity. IQGAPs are multi-domain molecules having a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeats, a single WW domain, four IQ motifs that mediate interactions with calmodulin, and a RasGAP related domain that binds active Rho family GTPases. IQGAP is an essential regulator of cytoskeletal function. IQGAP1 negatively regulates Ras family GTPases by stimulating their intrinsic GTPase activity, the protein actually lacks GAP activity. Both IQGAP1 and IQGAP2 specifically bind to Cdc42 and Rac1, but not to RhoA. Despite of their similarities to part of the sequence of RasGAP, neither IQGAP1 nor IQGAP2 interacts with Ras. IQGA
Probab=100.00 E-value=3e-47 Score=453.52 Aligned_cols=267 Identities=28% Similarity=0.511 Sum_probs=247.0
Q ss_pred CcHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-hchHHHHHHHHHhHHHHHhcCCCccccCCCCCCCh---
Q psy14861 978 HMLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKI-YGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPS--- 1053 (1648)
Q Consensus 978 ~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~Tkll~~y~r~-~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~--- 1053 (1648)
+++++|++.+++.||+.+.+.+++|||||+|||++..|+|. .|+.||+++|+|+|++++++++++||+||.+++..
T Consensus 8 ~lllkli~~~i~~Ei~~~~~~~~l~r~Ns~~~kll~~y~r~~~g~~yL~~~L~p~i~~ii~~~~l~lE~DP~~iy~~~i~ 87 (325)
T cd05127 8 YLLLKLFQELLQEEISEAPSLQDLLRGNTVWIKMLANYNRRARGQKYLKSLLGPVVKEIIEDPDLDLESDPVKIYKSLIN 87 (325)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHhcCcHHHHHHHHHhCCccchHHHHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999997 99999999999999999998889999999987632
Q ss_pred ---------------------------hhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhhCCCCCCc
Q psy14861 1054 ---------------------------ENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQN 1106 (1648)
Q Consensus 1054 ---------------------------e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~kFP~~~e~ 1106 (1648)
+.+++|+++|+.+|++|+++|++|+++||+++|+||+++++.+.+|||+.++.
T Consensus 88 ~e~~~g~~s~~~~~~~~e~a~~~p~v~~~~~~nl~~L~~~~~~fl~~I~~s~~~~P~~lR~i~~~l~~~~~~kfp~~~~~ 167 (325)
T cd05127 88 QEEQTGGESSLPLDVPPEEAIEDPEVRNIFIENLQSLRELTEQFLDAIISSLDKIPYGIRYICKQIYEALQRKFPEATED 167 (325)
T ss_pred HHHHcCCCCCCCCCCCHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 23788999999999999999999999999999999999999999999986533
Q ss_pred -cchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCCC-CccccchhHHHHHHHHHHHHHH
Q psy14861 1107 -NIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIARQF 1184 (1648)
Q Consensus 1107 -~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F~-KE~~m~~lN~fi~~~~~~~~~f 1184 (1648)
.+.+||+|+|+|||||||++|+.||+++..|++.+||||++||||||++||+..|+ ||+||.|||+|+.++.+++++|
T Consensus 168 ~~~~~vg~flflRfi~PAIvsP~~~gl~~~~~~~~~rrnL~~iaKvLq~lan~~~f~~ke~~m~~LN~fi~~~~~~~~~f 247 (325)
T cd05127 168 EILKVIGNFLYYRFINPAIVSPENFGIVDGSPTPDQRRNLGEVAKVLQQAASNKPFGGENGYLSPLNDYISESKPRFRDF 247 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhcCCcCCCCCHHHHhhHHHHHHHHHHHHCCCCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999899999999999999999999999996 9999999999999999999999
Q ss_pred HHHhhcCCCCCCc-----------CCCcccccchhhHHHHHHHHHHHHHHHhhhhccCccccccCCCccchHHHHHhhcC
Q psy14861 1185 FIQIASDCVTEDA-----------GAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLLAYLG 1253 (1648)
Q Consensus 1185 l~~is~~~~~~~~-----------~~~~~~~i~~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~~~~~~~D~L~~lL~~LG 1253 (1648)
+.+++++++.++. ..+|+.+|+.+|+..+|+++++|.+.+.+ ...|+|+.++++||
T Consensus 248 l~~l~~v~~~e~~~~~d~y~dl~~~~~p~l~i~~~ei~~ih~ll~~~~~~~~p-------------~~~d~l~~i~~~lg 314 (325)
T cd05127 248 LKELIDVPDPEEEFEIDEYYDLVSKTKPVLYISVNEIINTHSLLLEHIDEIAP-------------DKDDPLRELLKELG 314 (325)
T ss_pred HHHHcCCCCHHHhcCchhHHHHHhCCCCeEEeeHHHHHHHHHHHHHHHHHhCC-------------CCCCcHHHHHHHhC
Confidence 9999988776532 45788999999999999999999999873 25699999999999
Q ss_pred CCCC
Q psy14861 1254 PPEH 1257 (1648)
Q Consensus 1254 ~P~~ 1257 (1648)
+++.
T Consensus 315 ~~~~ 318 (325)
T cd05127 315 EVPT 318 (325)
T ss_pred CCCC
Confidence 9984
No 31
>cd05131 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP family that contains a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeat, a single WW domain, four IQ motifs which mediate interactions with calmodulin, and a Ras-GTPase-activating protein (GAP)-related domain that binds Rho family GTPases. IQGAP2 and IQGAP3 play important roles in the regulation of the cytoskeleton for axon outgrowth in hippocampal neurons and are thought to stay in a common regulatory pathway. The results of RNA interference studies indicated that IQGAP3 partially compensates functions of IQGAP2, but has lesser ability than IQGAP2 to promote axon outgrowth in hippocampal neuron. Morevover, IQGAP2 is required for the cadherin-mediated cell-to-cell adhesion in Xenopus laevis embryos.
Probab=100.00 E-value=4.9e-47 Score=448.82 Aligned_cols=266 Identities=26% Similarity=0.445 Sum_probs=239.3
Q ss_pred ChHHHHHHHHHHHHhc-cCCcccccccCchhHHHHHHHHH-HhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCCh---
Q psy14861 337 MLPPLLWNMFYREVEV-SDCMQTLFRGNSLGSKLMAFCFK-IYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPS--- 411 (1648)
Q Consensus 337 ~l~~LL~~Li~~EI~~-t~~~~tLfR~NS~~tkll~~y~r-~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~~--- 411 (1648)
.+.+|+..+++.||+. +++.++++|+||+|+||+..|.| ..|+.||+++|+|+|+++++++++++|+||.+|+..
T Consensus 9 lllkl~~~~l~~Ei~~~~~~~~d~~r~Ns~~~km~~~y~r~~~g~~yLk~lL~p~v~~ii~~~~ldlE~dP~~Iy~~~i~ 88 (339)
T cd05131 9 LLLKLFETALREEIKSKVDQIQDIVTGNPTVIKMVVSFNRGARGQNTLRQLLAPVVKEIIEDKSLIINTNPVEVYKAWVN 88 (339)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHhccCcHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhcCcccCCcCCHHHHHHHHHH
Confidence 3567778888999997 58899999999999999999987 599999999999999999999999999999988521
Q ss_pred ------------------h----------hHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhHCCCCCc
Q psy14861 412 ------------------E----------NIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQ 463 (1648)
Q Consensus 412 ------------------e----------~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~rFp~~~~ 463 (1648)
+ .++.|+++|+.+|++|+++|++|+++||++|||||+++++++.+|||++.+
T Consensus 89 ~~e~~tG~~S~~~~~v~~e~Ai~~pev~~~~~~~l~~L~~~~~~fl~~I~~sv~~~P~~lR~ick~i~~~~~~kFP~~~~ 168 (339)
T cd05131 89 QLETATGEASKLPYDVTTEQALLHPEVRAKLESSIQVLRSVTDKVLGSIMSSLDLIPYGMRYIAKVLKNSLHEKFPDATE 168 (339)
T ss_pred HHHHhhCCcccCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCCch
Confidence 1 246789999999999999999999999999999999999999999999875
Q ss_pred cc-chhHHHHHHHHhhhccccCCcccCCcc----CCCChhhhhhhHHHHHHhHHhhcccccC-ccccCcchHHHHHHhHH
Q psy14861 464 NN-IGAVGTVIFLRFINPAIVTPQEMGIIN----KTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFV 537 (1648)
Q Consensus 464 ~~-~~aVg~fiFLRFi~PAIvsPe~fglv~----~~~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m~~lN~fi~~~~~ 537 (1648)
.. +.+||+|+|+|||||||++|+.||+++ ..+++.+||||+++|||||++||+..|+ ||+||+|||+|+.++.+
T Consensus 169 ~~~~~~VG~fiflRfi~PAIvsPe~f~ii~~~~~~~~~~~~rrnL~~iaKvLq~lan~~~F~~~e~~m~pLN~fi~~~~~ 248 (339)
T cd05131 169 DELLKIVGNLLYYRYMNPAIVAPDGFDIIDMTAGGQIHSDQRRNLGSVAKVLQHAASNKLFEGENDHLSSMNSYLSQTYQ 248 (339)
T ss_pred HHHHHHHHHHHHHHHccchhcCchhcCccccccCCCCCHHHHhhHHHHHHHHHHHHCCCCCCCcChHHHhHHHHHHHHHH
Confidence 33 478999999999999999999999986 3458899999999999999999999996 78899999999999999
Q ss_pred HHHHHHHHhhcCCCCcCC-----------CCCCCcccChHHHHHHHHHHHHHHHHHhhhhccCccccccCCCCcchHHHH
Q psy14861 538 IARQFFIQIASDCVTEDA-----------GAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATL 606 (1648)
Q Consensus 538 ~~~~fl~~i~~~~~~e~~-----------~~~~~~~is~~ei~~LHr~L~~~~~~I~~~L~~~~~~~~~~~~~fD~l~~l 606 (1648)
++++||.+++++++.|+. ..+|+++|+.+|++.+|++|.+|++.|++ ..+ |+|+.+
T Consensus 249 ~~~~fl~~l~~V~d~e~~~~~d~Y~dl~~~~kP~l~I~~~ei~~ih~ll~~~~~~i~p----~~~---------D~L~~i 315 (339)
T cd05131 249 KFRKFFQAACDVPEPEEKFNVDEYSDLVTLSKPVIYISIEEIINTHSLLLEHQDAIAP----DQN---------DLLHEL 315 (339)
T ss_pred HHHHHHHHHhcCCCHHHHcChhHHHHHHhccCCeEEeeHHHHHHHHHHHHHHHHHhCC----CCC---------ChHHHH
Confidence 999999999998876652 24688999999999999999999999984 233 999999
Q ss_pred HhhcCCCCC
Q psy14861 607 LAYLGPPEH 615 (1648)
Q Consensus 607 L~~LG~P~~ 615 (1648)
|.+||++|.
T Consensus 316 l~~Lg~~~~ 324 (339)
T cd05131 316 LKDLGVVPD 324 (339)
T ss_pred HHHcCCCCc
Confidence 999998775
No 32
>cd05127 RasGAP_IQGAP_related This family represents IQ motif containing GTPase activating protein (IQGAP) which associated with the Ras GTP-binding protein. A primary function of IQGAP proteins is to modulate cytoskeletal architecture. There are three known IQGAP family members: IQGAP1, IQGAP2 and IQGAP3. Human IQGAP1 and IQGAP2 share 62% indentity. IQGAPs are multi-domain molecules having a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeats, a single WW domain, four IQ motifs that mediate interactions with calmodulin, and a RasGAP related domain that binds active Rho family GTPases. IQGAP is an essential regulator of cytoskeletal function. IQGAP1 negatively regulates Ras family GTPases by stimulating their intrinsic GTPase activity, the protein actually lacks GAP activity. Both IQGAP1 and IQGAP2 specifically bind to Cdc42 and Rac1, but not to RhoA. Despite of their similarities to part of the sequence of RasGAP, neither IQGAP1 nor IQGAP2 interacts with Ras. IQGA
Probab=100.00 E-value=1.3e-46 Score=448.08 Aligned_cols=266 Identities=28% Similarity=0.531 Sum_probs=244.4
Q ss_pred ChHHHHHHHHHHHHhccCCcccccccCchhHHHHHHHHHH-hhHHHHHHHHHHhHHHHhccCCCccccCCCCCCCh----
Q psy14861 337 MLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKI-YGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPS---- 411 (1648)
Q Consensus 337 ~l~~LL~~Li~~EI~~t~~~~tLfR~NS~~tkll~~y~r~-~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~~---- 411 (1648)
.+.+|++.+++.||+.+.+.+++|||||+|||++..|+|. .|+.||+++|+|+|++++++++++||+||.+++.+
T Consensus 9 lllkli~~~i~~Ei~~~~~~~~l~r~Ns~~~kll~~y~r~~~g~~yL~~~L~p~i~~ii~~~~l~lE~DP~~iy~~~i~~ 88 (325)
T cd05127 9 LLLKLFQELLQEEISEAPSLQDLLRGNTVWIKMLANYNRRARGQKYLKSLLGPVVKEIIEDPDLDLESDPVKIYKSLINQ 88 (325)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHhcCcHHHHHHHHHhCCccchHHHHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999998 99999999999999999998889999999987532
Q ss_pred --------------------------hhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhHCCCCCc-c
Q psy14861 412 --------------------------ENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQ-N 464 (1648)
Q Consensus 412 --------------------------e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~rFp~~~~-~ 464 (1648)
+.+++|+++|+.+|++|+++|++|++.||+++||||+++++.+.++||+.++ .
T Consensus 89 e~~~g~~s~~~~~~~~e~a~~~p~v~~~~~~nl~~L~~~~~~fl~~I~~s~~~~P~~lR~i~~~l~~~~~~kfp~~~~~~ 168 (325)
T cd05127 89 EEQTGGESSLPLDVPPEEAIEDPEVRNIFIENLQSLRELTEQFLDAIISSLDKIPYGIRYICKQIYEALQRKFPEATEDE 168 (325)
T ss_pred HHHcCCCCCCCCCCCHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 1257899999999999999999999999999999999999999999999763 3
Q ss_pred cchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccccC-ccccCcchHHHHHHhHHHHHHHH
Q psy14861 465 NIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIARQFF 543 (1648)
Q Consensus 465 ~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m~~lN~fi~~~~~~~~~fl 543 (1648)
.+.+||+|+|+|||||||++|+.||+++..+++.+||||++||||||++||+..|+ ||+||.|||+|+.++.+++++||
T Consensus 169 ~~~~vg~flflRfi~PAIvsP~~~gl~~~~~~~~~rrnL~~iaKvLq~lan~~~f~~ke~~m~~LN~fi~~~~~~~~~fl 248 (325)
T cd05127 169 ILKVIGNFLYYRFINPAIVSPENFGIVDGSPTPDQRRNLGEVAKVLQQAASNKPFGGENGYLSPLNDYISESKPRFRDFL 248 (325)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhcCCcCCCCCHHHHhhHHHHHHHHHHHHCCCCCCCCChhhhhHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999998899999999999999999999999997 99999999999999999999999
Q ss_pred HHhhcCCCCcCC-----------CCCCCcccChHHHHHHHHHHHHHHHHHhhhhccCccccccCCCCcchHHHHHhhcCC
Q psy14861 544 IQIASDCVTEDA-----------GAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGP 612 (1648)
Q Consensus 544 ~~i~~~~~~e~~-----------~~~~~~~is~~ei~~LHr~L~~~~~~I~~~L~~~~~~~~~~~~~fD~l~~lL~~LG~ 612 (1648)
.+++++++.|+. ..+|+++|+.+|+..+|++|++|.+.+++ ..+ |+|+.++.+||.
T Consensus 249 ~~l~~v~~~e~~~~~d~y~dl~~~~~p~l~i~~~ei~~ih~ll~~~~~~~~p----~~~---------d~l~~i~~~lg~ 315 (325)
T cd05127 249 KELIDVPDPEEEFEIDEYYDLVSKTKPVLYISVNEIINTHSLLLEHIDEIAP----DKD---------DPLRELLKELGE 315 (325)
T ss_pred HHHcCCCCHHHhcCchhHHHHHhCCCCeEEeeHHHHHHHHHHHHHHHHHhCC----CCC---------CcHHHHHHHhCC
Confidence 999998876643 24788999999999999999999999984 333 899999999999
Q ss_pred CCC
Q psy14861 613 PEH 615 (1648)
Q Consensus 613 P~~ 615 (1648)
|+.
T Consensus 316 ~~~ 318 (325)
T cd05127 316 VPT 318 (325)
T ss_pred CCC
Confidence 985
No 33
>cd04519 RasGAP RasGAP: Ras-GTPase Activating Domain. RasGAP functions as an enhancer of the hydrolysis of GTP that is bound to Ras-GTPases. Proteins having a RasGAP domain include p120GAP, IQGAP, Rab5-activating protein 6, and Neurofibromin. Although the Rho (Ras homolog) GTPases are most closely related to members of the Ras family, RhoGAP and RasGAP show no sequence homology at their amino acid level. RasGTPases function as molecular switches in a myriad of signaling pathways. When bound to GTP they are in the on state and when bound to GDP they are in the off state. The RasGap domain speeds up the hydrolysis of GTP in Ras-like proteins acting as a negative regulator.
Probab=100.00 E-value=8.3e-41 Score=398.41 Aligned_cols=293 Identities=37% Similarity=0.588 Sum_probs=264.0
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCchhHHH
Q psy14861 932 FEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKL 1011 (1648)
Q Consensus 932 ye~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~Tkl 1011 (1648)
|+++..++.... ..+.++..++.+++..+.+.++..++++|.++|.+.++++.++..||+++++.+++|||||++|++
T Consensus 3 ~~~l~~ll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ll~~li~~ei~~~~~~~~lfr~ns~~t~~ 80 (318)
T cd04519 3 YDRLEELLLKLP--LELLLAEILSLVCPQDEVEELAISLLTLFLSRGKLLELLKELIKPEIKRTDEPNTLFRGNSLATRP 80 (318)
T ss_pred chHHHHHHHcCc--chhHHHHHHhcCCChhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcCCchhHHhhhchHhhHH
Confidence 566777775221 123466777888887889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHH
Q psy14861 1012 MAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHC 1091 (1648)
Q Consensus 1012 l~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~ 1091 (1648)
+..|++..|++||+++++|++.+++.+ +..+|+| .+....+.+++|+++|+++++.++++|++|++.+|+++|++|++
T Consensus 81 ~~~y~~~~~~~yl~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~n~~~l~~~~~~~~~~i~~s~~~~P~~lr~i~~~ 158 (318)
T cd04519 81 LSIYLKLIGQEYLQKTLKPVILELVES-PESLEID-TKPEVSEDLEENLENLRELLEKFLDAIISSLDSLPPGLRYICKQ 158 (318)
T ss_pred HHHHHHHhCHHHHHHHHhhHHHHHhcC-CcccccC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHHHHHH
Confidence 999999999999999999999999986 6789988 56667788999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCCC-Cccccchh
Q psy14861 1092 LYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPF 1170 (1648)
Q Consensus 1092 i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F~-KE~~m~~l 1170 (1648)
+++.+.++||++ +..+.+||+|+|+|||||||++|+.||+++..|++.+||+|+++||+||++||+..|+ |++||.|+
T Consensus 159 i~~~~~~~f~~~-~~~~~~v~~f~flRfi~Pai~sP~~~~~~~~~~~~~~~r~L~~iakvlq~lan~~~~~~k~~~~~~l 237 (318)
T cd04519 159 LYESVAEKFPEE-DEALSAVGGFLFLRFICPAIVSPELFGIIDDKPSPKARRNLTLIAKVLQNLANGKLFSGKEPYMEPL 237 (318)
T ss_pred HHHHHHHHCCCc-cchHHHHHHHHHHHHhhhHhcCHHhcCCcCCCCCHhhhhHHHHHHHHHHHHhCCCcccccCHHHHHH
Confidence 999999999964 3668899999999999999999999999999889999999999999999999999996 99999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcCCCcccccchhhHHHHHHHHHHHHHHHhhhhc
Q psy14861 1171 NDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLS 1229 (1648)
Q Consensus 1171 N~fi~~~~~~~~~fl~~is~~~~~~~~~~~~~~~i~~~~i~~LHr~L~~~~~~I~~~l~ 1229 (1648)
|+|+.++.+++++|+.+++..++.++........+..+++..+|++++.|.+++.+...
T Consensus 238 n~~i~~~~~~~~~fl~~i~~~~~~~~~~~~~~~~~~~~~i~~lh~~l~~~~~~l~~~~~ 296 (318)
T cd04519 238 NDFIKENKDKFKDFLDEISSVPELEETFELDVLEISDSEIISLHSLLLEHLEELRPELD 296 (318)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccccccceeccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999998776655444445678889999999999999999986433
No 34
>cd04519 RasGAP RasGAP: Ras-GTPase Activating Domain. RasGAP functions as an enhancer of the hydrolysis of GTP that is bound to Ras-GTPases. Proteins having a RasGAP domain include p120GAP, IQGAP, Rab5-activating protein 6, and Neurofibromin. Although the Rho (Ras homolog) GTPases are most closely related to members of the Ras family, RhoGAP and RasGAP show no sequence homology at their amino acid level. RasGTPases function as molecular switches in a myriad of signaling pathways. When bound to GTP they are in the on state and when bound to GDP they are in the off state. The RasGap domain speeds up the hydrolysis of GTP in Ras-like proteins acting as a negative regulator.
Probab=100.00 E-value=3.5e-40 Score=393.08 Aligned_cols=293 Identities=37% Similarity=0.589 Sum_probs=262.4
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccCCcccccccCchhHHH
Q psy14861 290 FEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKL 369 (1648)
Q Consensus 290 ye~l~~Ll~~~~~~~~l~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~~~~tLfR~NS~~tkl 369 (1648)
|+++..++.... ..+..+..++..|+..+.+.++..++++|..+|+..++++.++..||+.+++++++|||||++|++
T Consensus 3 ~~~l~~ll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ll~~li~~ei~~~~~~~~lfr~ns~~t~~ 80 (318)
T cd04519 3 YDRLEELLLKLP--LELLLAEILSLVCPQDEVEELAISLLTLFLSRGKLLELLKELIKPEIKRTDEPNTLFRGNSLATRP 80 (318)
T ss_pred chHHHHHHHcCc--chhHHHHHHhcCCChhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcCCchhHHhhhchHhhHH
Confidence 455556655321 112466777888887889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHH
Q psy14861 370 MAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHC 449 (1648)
Q Consensus 370 l~~y~r~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~ 449 (1648)
+..|++..|++||+++++|++.+++..+ ..+|+| .+....+.+++|+++|++++++++++|++|++.+|+++|++|++
T Consensus 81 ~~~y~~~~~~~yl~~~l~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~n~~~l~~~~~~~~~~i~~s~~~~P~~lr~i~~~ 158 (318)
T cd04519 81 LSIYLKLIGQEYLQKTLKPVILELVESP-ESLEID-TKPEVSEDLEENLENLRELLEKFLDAIISSLDSLPPGLRYICKQ 158 (318)
T ss_pred HHHHHHHhCHHHHHHHHhhHHHHHhcCC-cccccC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHHHHHH
Confidence 9999999999999999999999999865 588887 45555678899999999999999999999999999999999999
Q ss_pred HHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccccC-ccccCcch
Q psy14861 450 LYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPF 528 (1648)
Q Consensus 450 i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m~~l 528 (1648)
+++.+.++||+. +..+.+||+|+|+|||||||++|+.||+++..+++.+||+|+++||+||++||+..|+ |++||.++
T Consensus 159 i~~~~~~~f~~~-~~~~~~v~~f~flRfi~Pai~sP~~~~~~~~~~~~~~~r~L~~iakvlq~lan~~~~~~k~~~~~~l 237 (318)
T cd04519 159 LYESVAEKFPEE-DEALSAVGGFLFLRFICPAIVSPELFGIIDDKPSPKARRNLTLIAKVLQNLANGKLFSGKEPYMEPL 237 (318)
T ss_pred HHHHHHHHCCCc-cchHHHHHHHHHHHHhhhHhcCHHhcCCcCCCCCHhhhhHHHHHHHHHHHHhCCCcccccCHHHHHH
Confidence 999999999986 4567899999999999999999999999998889999999999999999999999997 99999999
Q ss_pred HHHHHHhHHHHHHHHHHhhcCCCCcCCCCCCCcccChHHHHHHHHHHHHHHHHHhhhhc
Q psy14861 529 NDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLS 587 (1648)
Q Consensus 529 N~fi~~~~~~~~~fl~~i~~~~~~e~~~~~~~~~is~~ei~~LHr~L~~~~~~I~~~L~ 587 (1648)
|+|+.++.+++.+|+.+++..+..++....+..++..+++..+|++++.|.+++.+...
T Consensus 238 n~~i~~~~~~~~~fl~~i~~~~~~~~~~~~~~~~~~~~~i~~lh~~l~~~~~~l~~~~~ 296 (318)
T cd04519 238 NDFIKENKDKFKDFLDEISSVPELEETFELDVLEISDSEIISLHSLLLEHLEELRPELD 296 (318)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccccccceeccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999998877666544445678889999999999999999986433
No 35
>cd05129 RasGAP_RAP6 Rab5-activating protein 6 (RAP6) is an endosomal protein with a role in the regulation of receptor-mediated endocytosis. RAP6 contains a Vps9 domain, which is involved in the activation of Rab5, and a Ras GAP domain (RGD). Rab5 is a small GTPase required for the control of the endocystic route, and its activity is regulated by guanine nucleotide exchange factor, such as Rabex5, and GAPs, such as RN-tre. Human Rap6 protein is localized on the plasma membrane and on the endosome. RAP6 binds to Rab5 and Ras through the Vps9 and RGD domains, respectively.
Probab=100.00 E-value=1.3e-39 Score=384.21 Aligned_cols=253 Identities=21% Similarity=0.267 Sum_probs=213.6
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHhc---CcccHHHHH-HHHHHhhccCC------ChHHHHHHHHHHHHhccCCccc
Q psy14861 289 RFEELVKLVTLISDKGELSIAMALANVV---STSQMDELA-RVFVTLFDAKH------MLPPLLWNMFYREVEVSDCMQT 358 (1648)
Q Consensus 289 ~ye~l~~Ll~~~~~~~~l~~~~~l~~~~---~~~~~d~la-~~ll~lF~~~~------~l~~LL~~Li~~EI~~t~~~~t 358 (1648)
.|..|+.+|+. +|.. .+.+...+ +.++.+.+. .+++++|+++. .+.++++.+++.||+.++++++
T Consensus 2 ~Yq~LfylLqt---~P~y--LA~ll~~~~~~~~~~~~~~i~tv~~tLyg~~~~~rEE~lLL~L~~~~i~~Ei~~s~~~~~ 76 (353)
T cd05129 2 AYGELLNRLRE---NPQL--LASCLVTGERLNLESTQSVIQTVFTGLYGNCIMPEDESYLLQVLRELIELQLKESDNPRR 76 (353)
T ss_pred cHHHHHHHHHh---ChHH--HHHHHHHccccChHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 58889999884 4442 33344333 344455554 78899999874 3667888999999999999999
Q ss_pred ccccCc-hhHHHHHHHHHH--hhHHHHHHHHHHhHHHHhccCCCccccCCCCCCC----h-------------------h
Q psy14861 359 LFRGNS-LGSKLMAFCFKI--YGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP----S-------------------E 412 (1648)
Q Consensus 359 LfR~NS-~~tkll~~y~r~--~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~----~-------------------e 412 (1648)
++|+|+ .++++++.|.|. .|+.||+++|.++|.+++.++++++|+||.++.. . +
T Consensus 77 llR~n~~~~~~l~~~y~r~~~~gk~yL~~~L~~pi~~vi~~~~l~LEiDP~kiy~~~~~~e~E~~tG~~s~~~~~~~v~~ 156 (353)
T cd05129 77 LLRRGTCAFSRLFKLFVEGLFSAKLFLTAALHEPIMQLLVEDEFWLDIDPDKLMERFSPDEREKRFGEKGTKEYERRVQE 156 (353)
T ss_pred HHhcCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCcCcccCHHHHHHHhCcchhhhhcCCCCchhhhHHHHH
Confidence 999887 558998999985 7999999999765556777778999999998741 1 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCcc
Q psy14861 413 NIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIIN 492 (1648)
Q Consensus 413 ~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~ 492 (1648)
.++.++++|+.+|++|+++|++|++.+|+++||||++|++.+.++||++++....+||+|+|+||||||||+|+.||+++
T Consensus 157 ~~~~~i~~L~~i~~~Fl~~I~~S~~~~PyglR~Ick~i~~~L~~kfp~~~~ei~~~VG~~iflRfi~PAIVsPe~~gIvd 236 (353)
T cd05129 157 YRAEVEAKLVALVNKFIGSLKQNTYCFPPSLRWIVSQMSKILSKVGRLESGEVRAMCTDLLFTCFICPAIVNPEQYGIID 236 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhchhcCChhhcCCCC
Confidence 24568899999999999999999999999999999999999999999876555679999999999999999999999999
Q ss_pred CC-CChhhhhhhHHHHHHhHHhhcccccC-ccccCcchHHHHHHhHHHHHHHHHHhhcC
Q psy14861 493 KT-VPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIARQFFIQIASD 549 (1648)
Q Consensus 493 ~~-~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m~~lN~fi~~~~~~~~~fl~~i~~~ 549 (1648)
.. +++.+||||++||||||++||+..|+ +|+||.++|+| ..+.++.|++++++-
T Consensus 237 ~~~is~~~RrNL~~IAKvLQ~lA~~~~~~~~~~~m~~ln~~---~~~~~~~fl~~~~d~ 292 (353)
T cd05129 237 DAPISEVARFNLMQVGQILQMLALNKFESPDPRYKDILLKF---DKDCVAAFLDVLIDG 292 (353)
T ss_pred CCCCCHHHHHhHHHHHHHHHHHHcCCccCCccHHHHHHhhh---hHHHHHHHHHHHHhc
Confidence 88 69999999999999999999999884 89999999999 567789999999764
No 36
>KOG2059|consensus
Probab=100.00 E-value=2.9e-39 Score=386.64 Aligned_cols=261 Identities=27% Similarity=0.449 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHHhhccCCch--HHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccCCcccccccCc
Q psy14861 287 ADRFEELVKLVTLISDKGEL--SIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNS 364 (1648)
Q Consensus 287 ~~~ye~l~~Ll~~~~~~~~l--~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~~~~tLfR~NS 364 (1648)
.+-|..|..||....|..+. +++.-|.+.|. +..+.|+.||.+|.+.+++.++|..|...||..|.+++|||||||
T Consensus 283 s~~Y~pL~~LLl~s~d~~p~taS~v~ileEl~~--~kqdva~~LVrLfl~~~r~~pfl~~L~~~ei~rtqD~NTlFRgNS 360 (800)
T KOG2059|consen 283 SQYYKPLMDLLLESVDVQPITASAVAILEELCR--EKQDVARPLVRLFLHSDRIVPFLSALAVNEIKRTQDPNTIFRGNS 360 (800)
T ss_pred HhhhhhHHHHHHhcccccccchhHHHHHHHHhh--hhhhHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCCceeeeccc
Confidence 56789999988876664443 45666777777 788999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHH
Q psy14861 365 LGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLR 444 (1648)
Q Consensus 365 ~~tkll~~y~r~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR 444 (1648)
+++|+|..++|..|+.||+.+|+|+|.+|++++ .+|||||+|+..++++|+|+++|+.|.++++++|+.|+.+||.-+|
T Consensus 361 LasK~mde~mkl~Gm~YLh~tLkPvi~kI~eek-K~cEiDP~Kv~~g~~lE~n~~nLr~y~~~lf~ait~S~~~CP~vm~ 439 (800)
T KOG2059|consen 361 LASKMMDEFMKLAGMHYLHVTLKPVIDKIFEEK-KPCEIDPSKVKVGDNLETNLENLRVYVGRLFEAITKSSTRCPTVMC 439 (800)
T ss_pred hHHHHHHHHHHHhchHHHHHHhHHHHHHHHhhc-CCcccChhhhhhhhHHHhhHHHHHHHHHHHHHHHHhccccChHHHH
Confidence 999999999999999999999999999999974 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhccccc--Ccc
Q psy14861 445 SMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF--SKE 522 (1648)
Q Consensus 445 ~Ic~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f--~KE 522 (1648)
.+++.+++.+.+|||+.++..+.||++|+|||||.|||++|+.|.|.+.++++++.|+|++|||.+|+++|+..- +|+
T Consensus 440 ~~F~~Lr~~v~erFp~~~~V~y~AVSsFvfLRFFApAIlsPklF~Lr~~h~DaqTSRTLlLlsK~vQ~lGN~~~s~~~~~ 519 (800)
T KOG2059|consen 440 QIFYDLRERVGERFPSHPDVQYLAVSSFVFLRFFAPAILSPKLFHLRPHHPDAQTSRTLLLLSKTVQSLGNGSSSSSGKE 519 (800)
T ss_pred HHHHHHHHHHHhhCCCCCCCceEeeehhHHHHHhhHhhcCcccccccccCCchhhHHHHHHHHHHHHHhcCCCccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997654 367
Q ss_pred ccCcchHHHHHHh------HHHHHHHHHHhhcCC
Q psy14861 523 AHMIPFNDFLRAH------FVIARQFFIQIASDC 550 (1648)
Q Consensus 523 ~~m~~lN~fi~~~------~~~~~~fl~~i~~~~ 550 (1648)
.||+|+-..+-+. ...+..|++.+++..
T Consensus 520 s~kE~~~~~v~~~v~~e~~~~~~~~fld~is~~~ 553 (800)
T KOG2059|consen 520 SWKEPLMPTVFETVTEEQHFIAVKVFLDEISSVG 553 (800)
T ss_pred hhhhhhhHHHHHHHHHhHhHHHHHhhhhcccccc
Confidence 8888887766444 444556777765543
No 37
>cd05129 RasGAP_RAP6 Rab5-activating protein 6 (RAP6) is an endosomal protein with a role in the regulation of receptor-mediated endocytosis. RAP6 contains a Vps9 domain, which is involved in the activation of Rab5, and a Ras GAP domain (RGD). Rab5 is a small GTPase required for the control of the endocystic route, and its activity is regulated by guanine nucleotide exchange factor, such as Rabex5, and GAPs, such as RN-tre. Human Rap6 protein is localized on the plasma membrane and on the endosome. RAP6 binds to Rab5 and Ras through the Vps9 and RGD domains, respectively.
Probab=100.00 E-value=5e-39 Score=379.40 Aligned_cols=253 Identities=21% Similarity=0.280 Sum_probs=212.8
Q ss_pred hHHHHHHHHHhhhcCCchHHHHHHHhhc---CchhHHHHH-HHHHHhhcc------CCcHHHHHHHHHHHHhhcCCCccc
Q psy14861 931 RFEELVKLVTLISDKGELSIAMALANVV---STSQMDELA-RVFVTLFDA------KHMLPPLLWNMFYREVEVSDCMQT 1000 (1648)
Q Consensus 931 ~ye~L~~Ll~~l~~~~~l~l~~al~~v~---~~~~~d~la-~~Ll~lF~~------~~~l~~Ll~~li~~EI~~t~~~~~ 1000 (1648)
.|+.|+.+|. .+|. ..+.+...+ +.++.+.+. .+++++|++ +++++++++.+++.||+.++++++
T Consensus 2 ~Yq~LfylLq---t~P~--yLA~ll~~~~~~~~~~~~~~i~tv~~tLyg~~~~~rEE~lLL~L~~~~i~~Ei~~s~~~~~ 76 (353)
T cd05129 2 AYGELLNRLR---ENPQ--LLASCLVTGERLNLESTQSVIQTVFTGLYGNCIMPEDESYLLQVLRELIELQLKESDNPRR 76 (353)
T ss_pred cHHHHHHHHH---hChH--HHHHHHHHccccChHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 4888888875 2332 223333333 334455554 678899997 479999999999999999999999
Q ss_pred ccccCc-hhHHHHHHHHHH--hchHHHHHHHHHhHHHHHhcCCCccccCCCCCCC----h-------------------h
Q psy14861 1001 LFRGNS-LGSKLMAFCFKI--YGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP----S-------------------E 1054 (1648)
Q Consensus 1001 LfR~NS-~~Tkll~~y~r~--~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~----~-------------------e 1054 (1648)
++|+|+ .++++++.|.|. .|+.||+++|.+.|.+++.+++.++|+||.+++. . +
T Consensus 77 llR~n~~~~~~l~~~y~r~~~~gk~yL~~~L~~pi~~vi~~~~l~LEiDP~kiy~~~~~~e~E~~tG~~s~~~~~~~v~~ 156 (353)
T cd05129 77 LLRRGTCAFSRLFKLFVEGLFSAKLFLTAALHEPIMQLLVEDEFWLDIDPDKLMERFSPDEREKRFGEKGTKEYERRVQE 156 (353)
T ss_pred HHhcCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCcCcccCHHHHHHHhCcchhhhhcCCCCchhhhHHHHH
Confidence 999887 558999999985 7999999999755556666678999999998751 1 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCcc
Q psy14861 1055 NIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIIN 1134 (1648)
Q Consensus 1055 ~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~ 1134 (1648)
..+.++++|+.+|++|+++|++|++.+|+++||||++|++.+.++||++++....+||+|||+||||||||+|+.||+++
T Consensus 157 ~~~~~i~~L~~i~~~Fl~~I~~S~~~~PyglR~Ick~i~~~L~~kfp~~~~ei~~~VG~~iflRfi~PAIVsPe~~gIvd 236 (353)
T cd05129 157 YRAEVEAKLVALVNKFIGSLKQNTYCFPPSLRWIVSQMSKILSKVGRLESGEVRAMCTDLLFTCFICPAIVNPEQYGIID 236 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhchhcCChhhcCCCC
Confidence 34567899999999999999999999999999999999999999999766445679999999999999999999999999
Q ss_pred CC-CChhhhhhhHHHHHHHHHhhccCCCC-CccccchhHHHHHHHHHHHHHHHHHhhcC
Q psy14861 1135 KT-VPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIARQFFIQIASD 1191 (1648)
Q Consensus 1135 ~~-p~~~~rR~L~liaKvLQnlAN~~~F~-KE~~m~~lN~fi~~~~~~~~~fl~~is~~ 1191 (1648)
.. +++.+||||++||||||++||+..|+ +|+||.++|+| ..+.++.|+++++..
T Consensus 237 ~~~is~~~RrNL~~IAKvLQ~lA~~~~~~~~~~~m~~ln~~---~~~~~~~fl~~~~d~ 292 (353)
T cd05129 237 DAPISEVARFNLMQVGQILQMLALNKFESPDPRYKDILLKF---DKDCVAAFLDVLIDG 292 (353)
T ss_pred CCCCCHHHHHhHHHHHHHHHHHHcCCccCCccHHHHHHhhh---hHHHHHHHHHHHHhc
Confidence 88 69999999999999999999999884 89999999999 668899999999763
No 38
>KOG2059|consensus
Probab=100.00 E-value=2.1e-38 Score=379.31 Aligned_cols=259 Identities=27% Similarity=0.446 Sum_probs=229.2
Q ss_pred hhhHHHHHHHHHhhhc-CC-chHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCc
Q psy14861 929 ADRFEELVKLVTLISD-KG-ELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNS 1006 (1648)
Q Consensus 929 ~~~ye~L~~Ll~~l~~-~~-~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS 1006 (1648)
.+.|.+|..||..-.+ .+ .-.++.-|.++|. +..++|+.|+++|.+.+++.+++..+...||..|.++||||||||
T Consensus 283 s~~Y~pL~~LLl~s~d~~p~taS~v~ileEl~~--~kqdva~~LVrLfl~~~r~~pfl~~L~~~ei~rtqD~NTlFRgNS 360 (800)
T KOG2059|consen 283 SQYYKPLMDLLLESVDVQPITASAVAILEELCR--EKQDVARPLVRLFLHSDRIVPFLSALAVNEIKRTQDPNTIFRGNS 360 (800)
T ss_pred HhhhhhHHHHHHhcccccccchhHHHHHHHHhh--hhhhHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCCceeeeccc
Confidence 4458888888753222 11 1124444566666 778999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHH
Q psy14861 1007 LGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLR 1086 (1648)
Q Consensus 1007 ~~Tkll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR 1086 (1648)
+++|+|..++|..|+.||+.+|+|+|.+|+++ +.+|||||+|+..++.+|+|.+||+.|.++++++|+.|+..||.-+|
T Consensus 361 LasK~mde~mkl~Gm~YLh~tLkPvi~kI~ee-kK~cEiDP~Kv~~g~~lE~n~~nLr~y~~~lf~ait~S~~~CP~vm~ 439 (800)
T KOG2059|consen 361 LASKMMDEFMKLAGMHYLHVTLKPVIDKIFEE-KKPCEIDPSKVKVGDNLETNLENLRVYVGRLFEAITKSSTRCPTVMC 439 (800)
T ss_pred hHHHHHHHHHHHhchHHHHHHhHHHHHHHHhh-cCCcccChhhhhhhhHHHhhHHHHHHHHHHHHHHHHhccccChHHHH
Confidence 99999999999999999999999999999996 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCC--CCc
Q psy14861 1087 SMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF--SKE 1164 (1648)
Q Consensus 1087 ~Ic~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F--~KE 1164 (1648)
.+++.+++.|.+|||+.++..+.||+||+|||||.|||++|+.|.+.+.+|++++.|+|++|||.+|++.|++.- +|+
T Consensus 440 ~~F~~Lr~~v~erFp~~~~V~y~AVSsFvfLRFFApAIlsPklF~Lr~~h~DaqTSRTLlLlsK~vQ~lGN~~~s~~~~~ 519 (800)
T KOG2059|consen 440 QIFYDLRERVGERFPSHPDVQYLAVSSFVFLRFFAPAILSPKLFHLRPHHPDAQTSRTLLLLSKTVQSLGNGSSSSSGKE 519 (800)
T ss_pred HHHHHHHHHHHhhCCCCCCCceEeeehhHHHHHhhHhhcCcccccccccCCchhhHHHHHHHHHHHHHhcCCCccccchh
Confidence 999999999999999888889999999999999999999999999999999999999999999999999997665 378
Q ss_pred cccchhHHHHHHHHH------HHHHHHHHhhc
Q psy14861 1165 AHMIPFNDFLRAHFV------IARQFFIQIAS 1190 (1648)
Q Consensus 1165 ~~m~~lN~fi~~~~~------~~~~fl~~is~ 1190 (1648)
.||+|+-+++-+... .+..|++.+++
T Consensus 520 s~kE~~~~~v~~~v~~e~~~~~~~~fld~is~ 551 (800)
T KOG2059|consen 520 SWKEPLMPTVFETVTEEQHFIAVKVFLDEISS 551 (800)
T ss_pred hhhhhhhHHHHHHHHHhHhHHHHHhhhhcccc
Confidence 889888777655444 44455555544
No 39
>PF00616 RasGAP: GTPase-activator protein for Ras-like GTPase; InterPro: IPR001936 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. This intrinsic GTPase activity of ras is stimulated by a family of proteins collectively known as 'GAP' or GTPase-activating proteins [, ]. As it is the GTP bound form of ras which is active, these proteins are said to be down-regulators of ras. The Ras GTPase-activating proteins are quite large (from 765 residues for sar1 to 3079 residues for IRA2) but share only a limited (about 250 residues) region of sequence similarity, referred to as the 'catalytic domain' or rasGAP domain. Note: There are distinctly different GAPs for the rap and rho/rac subfamilies of ras-like proteins (reviewed in reference []) that do not share sequence similarity with ras GAPs.; GO: 0005096 GTPase activator activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3BXJ_B 1WQ1_G 1WER_A 1NF1_A 3FAY_A.
Probab=100.00 E-value=4.5e-34 Score=317.77 Aligned_cols=174 Identities=38% Similarity=0.717 Sum_probs=156.5
Q ss_pred HHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-hchHHHHHHHHHhHHHHHhcCCCccccCCCCCC----------
Q psy14861 983 LLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKI-YGASYLQNLLEPLISPLLDKAHVAFEVDPARLD---------- 1051 (1648)
Q Consensus 983 Ll~~li~~EI~~t~~~~~LfR~NS~~Tkll~~y~r~-~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~---------- 1051 (1648)
|++.+++.||+.+++++++||+||+++|++..|+|. .|++||+++|+|++.++++ ++.++|+||.+++
T Consensus 1 li~~li~~Ei~~~~~~~~lfr~ns~~~k~l~~y~~~~~~~~yL~~~l~~~v~~i~~-~~~~~eidp~~i~~~~~~~~~~~ 79 (197)
T PF00616_consen 1 LISELIEREISNTSSPNTLFRGNSVATKLLSAYARRPVGKEYLKEILKPIVQEIIN-SDLDLEIDPSKIYQSLSSQKEPD 79 (197)
T ss_dssp HHHHHHHHHHHHTSSCCCTTCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTS-----CCCCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHcCCCHhHHHhCCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhC-CCCCeeecHHHHHHHHhhhhhcc
Confidence 688999999999999999999999999999999999 9999999999999999995 6899999999998
Q ss_pred -----------ChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhhCCCCC-CccchhHHHHHHhHh
Q psy14861 1052 -----------PSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQP-QNNIGAVGTVIFLRF 1119 (1648)
Q Consensus 1052 -----------~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~kFP~~~-e~~~~aVg~fiFLRF 1119 (1648)
.++.+++|+++|+++++.|+++|++|++.+|+++|++|+.++.++.++||+.. +..+.+||+|+|+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~n~~~L~~~~~~~~~~i~~s~~~~P~~lr~i~~~i~~~~~~~fp~~~~~~~~~~v~~fiflrf 159 (197)
T PF00616_consen 80 ISSEKAISDPRVSEILEENLQNLRELCESFLDAIISSIDQIPPSLRYICKQIYEAVEKKFPDASPEEILSAVGGFIFLRF 159 (197)
T ss_dssp --HHHHTTSHHCCCCHHHHHHHHHHHHHHHHHHHHGGGGGS-HHHHHHHHHHHHHHHHHTTTSSHCHHHHHHHHHHTTTT
T ss_pred CCHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999754 455789999999999
Q ss_pred hhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhc
Q psy14861 1120 INPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIAN 1157 (1648)
Q Consensus 1120 icPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN 1157 (1648)
|||||++|+.||+++..+++.+||+|++|||+||++||
T Consensus 160 i~PAi~~P~~~~~~~~~~~~~~~r~L~~isKvlq~lan 197 (197)
T PF00616_consen 160 ICPAIVSPELFGLVDKPPSPNARRNLTLISKVLQSLAN 197 (197)
T ss_dssp HHHHHHSTTTTTSSSS---HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCHHHcCCCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999777899999999999999999998
No 40
>PF00616 RasGAP: GTPase-activator protein for Ras-like GTPase; InterPro: IPR001936 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. This intrinsic GTPase activity of ras is stimulated by a family of proteins collectively known as 'GAP' or GTPase-activating proteins [, ]. As it is the GTP bound form of ras which is active, these proteins are said to be down-regulators of ras. The Ras GTPase-activating proteins are quite large (from 765 residues for sar1 to 3079 residues for IRA2) but share only a limited (about 250 residues) region of sequence similarity, referred to as the 'catalytic domain' or rasGAP domain. Note: There are distinctly different GAPs for the rap and rho/rac subfamilies of ras-like proteins (reviewed in reference []) that do not share sequence similarity with ras GAPs.; GO: 0005096 GTPase activator activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3BXJ_B 1WQ1_G 1WER_A 1NF1_A 3FAY_A.
Probab=100.00 E-value=1.1e-33 Score=314.61 Aligned_cols=174 Identities=38% Similarity=0.717 Sum_probs=155.7
Q ss_pred HHHHHHHHHHhccCCcccccccCchhHHHHHHHHHH-hhHHHHHHHHHHhHHHHhccCCCccccCCCCCC----------
Q psy14861 341 LLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKI-YGASYLQNLLEPLISPLLDKAHVAFEVDPARLD---------- 409 (1648)
Q Consensus 341 LL~~Li~~EI~~t~~~~tLfR~NS~~tkll~~y~r~-~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~---------- 409 (1648)
|++.+++.||+.+++++++||+||+++|++..|+|. .|+.||+++|+|+++++++ ++.++|+||.++.
T Consensus 1 li~~li~~Ei~~~~~~~~lfr~ns~~~k~l~~y~~~~~~~~yL~~~l~~~v~~i~~-~~~~~eidp~~i~~~~~~~~~~~ 79 (197)
T PF00616_consen 1 LISELIEREISNTSSPNTLFRGNSVATKLLSAYARRPVGKEYLKEILKPIVQEIIN-SDLDLEIDPSKIYQSLSSQKEPD 79 (197)
T ss_dssp HHHHHHHHHHHHTSSCCCTTCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTS-----CCCCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHcCCCHhHHHhCCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhC-CCCCeeecHHHHHHHHhhhhhcc
Confidence 688999999999999999999999999999999999 9999999999999999994 5799999999997
Q ss_pred -----------ChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhHCCCCC-cccchhHHHHHHHHh
Q psy14861 410 -----------PSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQP-QNNIGAVGTVIFLRF 477 (1648)
Q Consensus 410 -----------~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~rFp~~~-~~~~~aVg~fiFLRF 477 (1648)
.++.+++|.++|+++++.|+++|++|++.+|+++||+|+.+++++.++||+.. +..+.+||+|+|+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~n~~~L~~~~~~~~~~i~~s~~~~P~~lr~i~~~i~~~~~~~fp~~~~~~~~~~v~~fiflrf 159 (197)
T PF00616_consen 80 ISSEKAISDPRVSEILEENLQNLRELCESFLDAIISSIDQIPPSLRYICKQIYEAVEKKFPDASPEEILSAVGGFIFLRF 159 (197)
T ss_dssp --HHHHTTSHHCCCCHHHHHHHHHHHHHHHHHHHHGGGGGS-HHHHHHHHHHHHHHHHHTTTSSHCHHHHHHHHHHTTTT
T ss_pred CCHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999764 456789999999999
Q ss_pred hhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhc
Q psy14861 478 INPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIAN 515 (1648)
Q Consensus 478 i~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN 515 (1648)
|||||++|+.||+++..+++.+||+|++|||+||++||
T Consensus 160 i~PAi~~P~~~~~~~~~~~~~~~r~L~~isKvlq~lan 197 (197)
T PF00616_consen 160 ICPAIVSPELFGLVDKPPSPNARRNLTLISKVLQSLAN 197 (197)
T ss_dssp HHHHHHSTTTTTSSSS---HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCHHHcCCCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999777899999999999999999998
No 41
>KOG3508|consensus
Probab=100.00 E-value=2.6e-32 Score=341.06 Aligned_cols=624 Identities=22% Similarity=0.272 Sum_probs=433.9
Q ss_pred chHHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCcccccccCchhHHHHHHHHHHhhHHHHH
Q psy14861 305 ELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVS-DCMQTLFRGNSLGSKLMAFCFKIYGASYLQ 383 (1648)
Q Consensus 305 ~l~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t-~~~~tLfR~NS~~tkll~~y~r~~G~~YL~ 383 (1648)
.+.++.++-...+...-+++|..|+++-.+.++..+|+..|...|+..+ .....+||.|+.+||++..|++..|++||+
T Consensus 254 y~~lc~~lnp~l~~~~kEe~a~aLvr~l~s~~~ak~fl~Dl~~~e~~r~~~idhlifrentlatka~ep~mklv~q~yl~ 333 (932)
T KOG3508|consen 254 YFLLCPVLNPPLDVSLKEELANALVRVLISTGRAKQFLMDLRMKEVLRLGDIDHLIFRENTLATKAIEPYMKLVAQDYLQ 333 (932)
T ss_pred eeeeecccCCCcchhHHHHHHHHHHHHHHhcchHHHHhhcchhHhhhhccchhhhhhhhhhhhhhhhhHHHHhhHHHHHH
Confidence 3334555556666777889999999999999999999999999999998 788999999999999999999999999999
Q ss_pred HHHHHhHHHHhccCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhHCCCCCc
Q psy14861 384 NLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQ 463 (1648)
Q Consensus 384 ~~L~p~i~~Ii~~~~~~~EiDP~ki~~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~rFp~~~~ 463 (1648)
++|+..|..|+++. -+||+||.+.. ..++.++..+|+..|+..|..|+.|...+|.+++.++...++....|--. +
T Consensus 334 dtl~eki~~iy~S~-e~cevDp~k~~-~s~l~~hq~~lK~~~e~~~~ki~~sl~~~p~el~~vf~s~r~r~~~rgri--d 409 (932)
T KOG3508|consen 334 DTLGEKIKAIYEST-ENCEVDPSKCS-YSSLPKHQALLKKCCELAWKKIYNSLCVFPSELQLVFSSWRKRCKPRGRI--D 409 (932)
T ss_pred HHHHHHHHHHHccc-ccceecccccc-ccchhhHHHHHhhhHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccccch--h
Confidence 99999999999874 58999999986 55788899999999999999999999999999999998888876665432 1
Q ss_pred ccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccccC-ccccCcchHHHHHHhHHHHHHH
Q psy14861 464 NNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIARQF 542 (1648)
Q Consensus 464 ~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m~~lN~fi~~~~~~~~~f 542 (1648)
..-..|.+=+|+||+||||++|..|++....|++...|+|++|||++||+||.+.|+ ||+||..||+|+......++.|
T Consensus 410 ls~~lv~aSLFlR~lCpaI~spslF~l~~eYp~~~tsrtLtlIak~lQnlan~skfg~ke~~m~fmn~fleh~~~~mk~f 489 (932)
T KOG3508|consen 410 LSDRLVSASLFLRFLCPAILSPSLFNLAQEYPSPTTARTLTLIAKVLQNLANFSKFGGKEKRMRFMNEFLEHEWEAMKLF 489 (932)
T ss_pred hhhhhhhHhhhcccccHHHhhHHHhhhhhhcCCCcchHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 222489999999999999999999999999999999999999999999999999996 8999999999999999999999
Q ss_pred HHHhhcCCC-CcCCCCCCCcccCh-HHHHHHHHHHHHHHHHHhhhhccCccccccCCCCcchHHHHHhhcCCCCCCCccc
Q psy14861 543 FIQIASDCV-TEDAGAHSMSFISD-TNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEHKPVES 620 (1648)
Q Consensus 543 l~~i~~~~~-~e~~~~~~~~~is~-~ei~~LHr~L~~~~~~I~~~L~~~~~~~~~~~~~fD~l~~lL~~LG~P~~~~~~~ 620 (1648)
+.+|+.... .+... -.-+++. .|+..+|.+|++-+..+-.-+ +......+|+-|..
T Consensus 490 lk~isnp~~l~~~~~--~~~~~dlg~Els~l~~~L~e~l~~l~~~~----------------~q~~~~k~~plP~l---- 547 (932)
T KOG3508|consen 490 LKRISNPSCLNNVKN--AKGIVDLGLELSWLHEFLWEDLPPLSGLI----------------TQETRGKLGPLPRL---- 547 (932)
T ss_pred HHHcCCcccccccch--hhhhhhccccchHHHHHHHHhhcchhhhH----------------HHhhccccCCCchh----
Confidence 999976322 11111 1112222 478889999998776554210 11111223332210
Q ss_pred cccccccccccccCCCCcchHHHHHHhcchhhhhhhcccc----ccceeccCccCCCCcEEEEEeccccccCCchHHHHH
Q psy14861 621 HMFFSSYARWSSIDMSNNNFEELMMKRNMQEKEEFKSIKS----LNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIY 696 (1648)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~efm~r~~~~~~~~~~~i~~----~~~f~~~~~s~~g~pV~~~i~rr~~~~~~d~e~LvY 696 (1648)
-+|. .....++. ..-|..-+.+ |+
T Consensus 548 ---------------------~~v~-------~~Ls~~~~g~~tl~~~~l~~~s----P~-------------------- 575 (932)
T KOG3508|consen 548 ---------------------ADVS-------TVLSELELGQCTLRSFNLLNHS----PL-------------------- 575 (932)
T ss_pred ---------------------hHHH-------HHhcccccccccccccccccCC----cc--------------------
Confidence 0110 00000000 0000000011 11
Q ss_pred HHHHHhhhhhccchhhHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHHccccccccchhhHhHHHHHHHHHHhhcccC
Q psy14861 697 HVILTMYVRHIDMTVHAVHIKTKLYVRHIDMTVHAVHIKTKLCNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLGSA 776 (1648)
Q Consensus 697 ~il~tl~~~~iD~s~~~l~l~~~~y~~~l~~~~~~~rik~k~c~L~~~~~~~~~~l~~~~~~~~RN~~l~~~~~W~~~~~ 776 (1648)
.++|.+.
T Consensus 576 -----------------------------------------------------------------------~~Q~~s~-- 582 (932)
T KOG3508|consen 576 -----------------------------------------------------------------------MLQQGSS-- 582 (932)
T ss_pred -----------------------------------------------------------------------ccccccc--
Confidence 2222110
Q ss_pred CCcCCCCCCCcchhhhhchHHHHHHHHHHHHhcCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhcccchhhhhhc
Q psy14861 777 NQVTIPPTPGESFVSISRDLDQACMDAVAALLKGLPLQPEESDKGDLMEAKSSLFLKYFTLFMNLLNDCTDSQELDKEAS 856 (1648)
Q Consensus 777 ~~~~~~~~~~d~~~~l~rDLd~~c~kala~Ll~~LpL~p~~~~~~~~~~~ks~~F~~yF~~f~~~l~~~~~~~~~~~~~~ 856 (1648)
+.+ + ++ ..+++- |.+.. ++.
T Consensus 583 --------~~~-~----~~------------~~~~i~-P~~e~--------------------------~~~-------- 602 (932)
T KOG3508|consen 583 --------RPR-N----SY------------MQQLIM-PRHEN--------------------------SPL-------- 602 (932)
T ss_pred --------chh-h----hc------------ccccCC-Ccccc--------------------------cch--------
Confidence 000 0 00 011100 10000 000
Q ss_pred cCcCccCccchhHHHHHHHHHHHHhccccccchhhccccccCChhhHHHHHHHHHHhccccccccchhhhHhhhhHHHHH
Q psy14861 857 RDRSKNDSSSNLRSSIIEAMSNLLSANIDSGLMHSIALGYHQDLQTRAAFMEVLTKILQQGTEFNTLAETVLADRFEELV 936 (1648)
Q Consensus 857 ~~~~~~~~~~~l~~~~i~alsnLl~aNid~gl~~~l~~gy~~d~~~R~aFl~v~~~il~~gt~f~~~~~~~~~~~ye~L~ 936 (1648)
+-..+. ..|. ...|+++.=.-|-.
T Consensus 603 ~~~~~~---~~l~--~~~a~~~s~~~~r~--------------------------------------------------- 626 (932)
T KOG3508|consen 603 YRLTLP---QELH--PVKALSLSCSTNRP--------------------------------------------------- 626 (932)
T ss_pred hhhccc---ccch--hhHhhhhhhccCcc---------------------------------------------------
Confidence 000000 0111 22333322111111
Q ss_pred HHHHhhhcCCchHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHH
Q psy14861 937 KLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCF 1016 (1648)
Q Consensus 937 ~Ll~~l~~~~~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~Tkll~~y~ 1016 (1648)
..+..+...|....+-......+...|+...+...++||+-|.++-.+..|+
T Consensus 627 ----------------------------~~~~~~~~s~~~~~lq~~~~~~~~~~~~~~e~e~~tl~~~~S~as~~~~~~~ 678 (932)
T KOG3508|consen 627 ----------------------------STASLLLRSFSQEKLQDLQTPPLRPGEVRREDETTTLFRRTSLASTSMAEYM 678 (932)
T ss_pred ----------------------------cchhhhhhhhhhhhhhhcccccccCcccccccccccccccccHhhhhcchhh
Confidence 1111111111111100011111223455556667889999999999999999
Q ss_pred HHhchHHHHHHHHHhHHH--HHhcCCCccccCC-CCCCChhhHHHHHHHHHH-HHHHHHHHHHhhcccCCHHHHHHHHHH
Q psy14861 1017 KIYGASYLQNLLEPLISP--LLDKAHVAFEVDP-ARLDPSENIENNRRELIS-WTKKVFDAIIDSADNFPPQLRSMCHCL 1092 (1648)
Q Consensus 1017 r~~G~~YL~~~L~p~i~~--ii~~~~~~~EiDP-~ki~~~e~~~~N~~~L~~-~~~~~l~~I~~S~~~~P~~lR~Ic~~i 1092 (1648)
|.....++...+..-..+ ... .+...+..| .+....++...|...+.+ +...-+..|..|-+-.|...++++++.
T Consensus 679 r~t~s~~~~~~~~~~~g~~~~~~-~~q~~~~sP~~~~~~~~~~~~n~~~~~~~i~se~~~~~~~s~~~~~~~~~f~~~~~ 757 (932)
T KOG3508|consen 679 RATDSGFLSAALRERPGRPFQRE-VKQSADLSPASKKQANDDYLTNLPSLSSYILSEDLSSIFKSDDLSPRNRDFIPGPL 757 (932)
T ss_pred ccCcccccccccccccCcccccc-cccccccCCCCCCCCCCccccCchhhhhhhhhHHHHhhhhccccCccchhhccCcc
Confidence 988888887777544333 222 245566667 455555667777777666 788888889999999999999999999
Q ss_pred HHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCCC-CccccchhH
Q psy14861 1093 YQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFN 1171 (1648)
Q Consensus 1093 ~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F~-KE~~m~~lN 1171 (1648)
...+..++|...+.+-.++.+++|+|.+|||..+|..|++... |.+..-|++.+.+|-+||.||...|+ ||.||+++|
T Consensus 758 Q~~~~~~~p~~~~~~~R~~s~~~~~~~l~~~~ln~~~~~l~~~-~~~~~~rt~~~~~~s~s~~~~~~~~~~ke~~~~~vn 836 (932)
T KOG3508|consen 758 QGSVQPKWPTEILYRKRAVSPPYFLSLLCYARLNPRVFALSSE-PCPVSPRTLALVAKSLQNLANLPEFGPKEIYMELLN 836 (932)
T ss_pred ccccccCCCchhhccccCCCcccchhhhccccCCchheecCCC-CcccCcchhhhhhhcccccccCCccCchhhhhhccC
Confidence 9999999997666666799999999999999999999999887 78888899999999999999999995 999999999
Q ss_pred -HHHHHHHHHHHHHHHHhhcCCCCCC---c---CCCcccccchhhHHHHHHHHHHHHHHHh
Q psy14861 1172 -DFLRAHFVIARQFFIQIASDCVTED---A---GAHSMSFISDTNVLALHRLLYNHQEKIG 1225 (1648)
Q Consensus 1172 -~fi~~~~~~~~~fl~~is~~~~~~~---~---~~~~~~~i~~~~i~~LHr~L~~~~~~I~ 1225 (1648)
+|+..+.+++..|+.+.+++.+... + .......+...+...+|.+...|.+...
T Consensus 837 ~p~~e~~~ar~~~f~~~l~~d~~e~~l~~~~e~~d~s~~~~~sr~~a~~helk~~h~~~~~ 897 (932)
T KOG3508|consen 837 PPFIERNKARMITFLDQLSSDRPENPLRSQLESQDESQARDISRLMAELHELKSKHSDELK 897 (932)
T ss_pred CccccccHHHHHHHHHhhcccCcccchhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987422111 0 0000111122456789999999988775
No 42
>KOG3508|consensus
Probab=99.93 E-value=4.7e-25 Score=276.46 Aligned_cols=286 Identities=23% Similarity=0.341 Sum_probs=243.0
Q ss_pred hHHHHHHHHHhhhcCCchHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcC-CCcccccccCchhH
Q psy14861 931 RFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVS-DCMQTLFRGNSLGS 1009 (1648)
Q Consensus 931 ~ye~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t-~~~~~LfR~NS~~T 1009 (1648)
.|+.+.+..+ ...+.++.++-...+....+++|..|+++-.+.+...+|+..+...|+..+ .....+||.|+.+|
T Consensus 242 ~y~~~~e~~~----~~y~~lc~~lnp~l~~~~kEe~a~aLvr~l~s~~~ak~fl~Dl~~~e~~r~~~idhlifrentlat 317 (932)
T KOG3508|consen 242 AYDELAETGT----YNYFLLCPVLNPPLDVSLKEELANALVRVLISTGRAKQFLMDLRMKEVLRLGDIDHLIFRENTLAT 317 (932)
T ss_pred HHHHHHHHhc----cceeeeecccCCCcchhHHHHHHHHHHHHHHhcchHHHHhhcchhHhhhhccchhhhhhhhhhhhh
Confidence 4666666664 223445555555666677889999999999999999999999999999998 88889999999999
Q ss_pred HHHHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHH
Q psy14861 1010 KLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMC 1089 (1648)
Q Consensus 1010 kll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic 1089 (1648)
+++..|++..|++||+++|+..|..|++. ..+||+||.+.. ...+.++..+|+..|+..|..|+.|...+|.+++.++
T Consensus 318 ka~ep~mklv~q~yl~dtl~eki~~iy~S-~e~cevDp~k~~-~s~l~~hq~~lK~~~e~~~~ki~~sl~~~p~el~~vf 395 (932)
T KOG3508|consen 318 KAIEPYMKLVAQDYLQDTLGEKIKAIYES-TENCEVDPSKCS-YSSLPKHQALLKKCCELAWKKIYNSLCVFPSELQLVF 395 (932)
T ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHHcc-cccceecccccc-ccchhhHHHHHhhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 99999999999999999999999999995 789999999997 6678899999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCCC-Cccccc
Q psy14861 1090 HCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMI 1168 (1648)
Q Consensus 1090 ~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F~-KE~~m~ 1168 (1648)
...++....|--. +-.-..|.+-+|+||+||||++|..||+....|++...|+|++|||++||+||.+.|+ ||.||.
T Consensus 396 ~s~r~r~~~rgri--dls~~lv~aSLFlR~lCpaI~spslF~l~~eYp~~~tsrtLtlIak~lQnlan~skfg~ke~~m~ 473 (932)
T KOG3508|consen 396 SSWRKRCKPRGRI--DLSDRLVSASLFLRFLCPAILSPSLFNLAQEYPSPTTARTLTLIAKVLQNLANFSKFGGKEKRMR 473 (932)
T ss_pred HHHHHhhccccch--hhhhhhhhHhhhcccccHHHhhHHHhhhhhhcCCCcchHHHHHHHHHHHHHHhhcccCchhHHHH
Confidence 9988887666431 3333489999999999999999999999999999999999999999999999999995 899999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCcccccch-hhHHHHHHHHHHHHHHHh
Q psy14861 1169 PFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISD-TNVLALHRLLYNHQEKIG 1225 (1648)
Q Consensus 1169 ~lN~fi~~~~~~~~~fl~~is~~~~~~~~~~~~~~~i~~-~~i~~LHr~L~~~~~~I~ 1225 (1648)
.||+|+...++.|+.|+..|+. ++...+......++.. .|+..+|.+||+-+..+-
T Consensus 474 fmn~fleh~~~~mk~flk~isn-p~~l~~~~~~~~~~dlg~Els~l~~~L~e~l~~l~ 530 (932)
T KOG3508|consen 474 FMNEFLEHEWEAMKLFLKRISN-PSCLNNVKNAKGIVDLGLELSWLHEFLWEDLPPLS 530 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-cccccccchhhhhhhccccchHHHHHHHHhhcchh
Confidence 9999999999999999999976 2222221111122222 378899999999765553
No 43
>KOG2128|consensus
Probab=99.92 E-value=4.1e-24 Score=273.85 Aligned_cols=309 Identities=23% Similarity=0.357 Sum_probs=256.2
Q ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHhcCcccHHHH-HHHHHHhhccC--CC----hHHHHHHHHHHHHhccCCccccc
Q psy14861 288 DRFEELVKLVTLISDKGELSIAMALANVVSTSQMDEL-ARVFVTLFDAK--HM----LPPLLWNMFYREVEVSDCMQTLF 360 (1648)
Q Consensus 288 ~~ye~l~~Ll~~~~~~~~l~~~~~l~~~~~~~~~d~l-a~~ll~lF~~~--~~----l~~LL~~Li~~EI~~t~~~~tLf 360 (1648)
+.|+.++.+|+. +| ..-+.+-...|....+++ -.++..+|+.. .+ +..+++.++.+||+..+...+|.
T Consensus 748 Ely~~lFy~LQt---~p--~Yla~l~~~l~~~~~~~~~~~v~f~if~~~sn~REe~Lllrlfs~~L~~eI~~v~~i~~l~ 822 (1401)
T KOG2128|consen 748 ELYQQLFYLLQT---DP--CYLASLILQLPIFRSTELMDIVVFTIFGYASNQREEILLLRLFSEVLQREIEKVDSIQDLL 822 (1401)
T ss_pred HHHHHHHHHHhc---CH--HHHHHHHHhhhhhhhhhhhhHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 566777777662 22 244566677777665444 47888899865 33 45677778889999767666555
Q ss_pred ccCchhHHHHHHHHHH-hhHHHHHHHHHHhHHHHhccCCCccccCCCCCCC----------h---------------hhH
Q psy14861 361 RGNSLGSKLMAFCFKI-YGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP----------S---------------ENI 414 (1648)
Q Consensus 361 R~NS~~tkll~~y~r~-~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~----------~---------------e~i 414 (1648)
-+ |+|.+|+..|.|. .|+.+|+.++.|+++.+.+.+++.+++||..+++ + +.+
T Consensus 823 sn-~~~~~mi~~y~R~srg~~~lr~il~~Vvk~l~d~~~l~~ds~P~~iyk~~vn~~~~~~sp~~~~e~al~~~~vkn~~ 901 (1401)
T KOG2128|consen 823 SN-SFVIKMIVDYNRRSRGQNILRSILVPVVKELADDPHLESDSNPVWIYKAFVNQFESQTSPYLVHEQALENPEVKNLL 901 (1401)
T ss_pred hc-chHHHHHHHHhccccccHHHHHHHHHHHHHHhhCCcccccCchHHHhHHhhhhhhccCCcccchhhhhcCHhHHHHH
Confidence 54 9999999999975 8999999999999999999889999999998853 1 123
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhHCCCCCcccc-hhHHHHHHHHhhhccccCCcccCCccC
Q psy14861 415 ENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNI-GAVGTVIFLRFINPAIVTPQEMGIINK 493 (1648)
Q Consensus 415 e~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~rFp~~~~~~~-~aVg~fiFLRFi~PAIvsPe~fglv~~ 493 (1648)
..+...|+.++++|++++.+|++.+|+++||+|+.+..++..+||+..+..+ .+||+|++.||.+||||+|+.+-....
T Consensus 902 ~~~l~~Lr~v~dkflda~~~sv~~iPy~lRyv~k~L~~~~~~~fP~a~~~ei~~vig~~~y~rfvsp~ivsp~~~~~~~g 981 (1401)
T KOG2128|consen 902 SSRLRNLRKVTDKFLDAVLSSVDLIPYGLRYVAKLLKNSLHRKFPAATEDEILKVIGNFLYSRFVSPAIVSPDTDRLLGG 981 (1401)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHHHHhccccccCcchhhhhcc
Confidence 5678999999999999999999999999999999999999999999876555 799999999999999999997777777
Q ss_pred CCChhhhhhhHHHHHHhHHhhcccccC-ccccCcchHHHHHHhHHHHHHHHHHhhcCCCCcCC-----------CCCCCc
Q psy14861 494 TVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDA-----------GAHSMS 561 (1648)
Q Consensus 494 ~~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m~~lN~fi~~~~~~~~~fl~~i~~~~~~e~~-----------~~~~~~ 561 (1648)
.++..+|+||..|+|++|..|++..+. +-.||.|||+|+.+..+++..++..+..+++.++. ..+|++
T Consensus 982 ~~t~dqrknl~sI~~~~~~~as~~~~~n~~~Fls~Ln~~~~~~~qk~~~~l~kl~~V~~le~~f~~d~y~dLv~~~kptL 1061 (1401)
T KOG2128|consen 982 QITDDQRKNLGSIAKILQSAASNKEKKNFLHFLSPLNPYLKEIEQKFIDYLRKLVNVPELEEKFEFDSYTDLVPVSKPTL 1061 (1401)
T ss_pred ccchHHHHhhHHHHHHHHHHhccccccchHHHHhhHHHHHHHHHHHHHHHHHHhcCcccHHHHHhHHhHhhhccccCceE
Confidence 889999999999999999999999874 55789999999999999999999999887765542 235889
Q ss_pred ccChHHHHHHHHHHHHHHHHHhhhhccCccccccCCCCcchHHHHHhhcCCCC
Q psy14861 562 FISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPE 614 (1648)
Q Consensus 562 ~is~~ei~~LHr~L~~~~~~I~~~L~~~~~~~~~~~~~fD~l~~lL~~LG~P~ 614 (1648)
|++..++..+|.+|.+|.+.|+.. ..+|+|.+++..+|.-|
T Consensus 1062 yl~~~~I~~~~~~Ll~~~d~i~~~------------~~~~~L~eLl~sl~~vp 1102 (1401)
T KOG2128|consen 1062 YLTIKEILDTHELLLENLDAIAPP------------ESNDPLIELLESLGLVP 1102 (1401)
T ss_pred EeeHHHHHHHHHHHHHHHhcCCCc------------hhhhHHHHHhcCcccCC
Confidence 999999999999999999999841 24578888877777644
No 44
>KOG2128|consensus
Probab=99.91 E-value=7.1e-24 Score=271.69 Aligned_cols=310 Identities=23% Similarity=0.361 Sum_probs=259.0
Q ss_pred hhHHHHHHHHHhhhcCCchHHHHHHHhhcCchhHHHH-HHHHHHhhcc------CCcHHHHHHHHHHHHhhcCCCccccc
Q psy14861 930 DRFEELVKLVTLISDKGELSIAMALANVVSTSQMDEL-ARVFVTLFDA------KHMLPPLLWNMFYREVEVSDCMQTLF 1002 (1648)
Q Consensus 930 ~~ye~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d~l-a~~Ll~lF~~------~~~l~~Ll~~li~~EI~~t~~~~~Lf 1002 (1648)
+.|+.|.-+|. .+| .-.+.+-...|....+++ -.++..+|+. +.+++.+++.++.+||+..+...+|.
T Consensus 748 Ely~~lFy~LQ---t~p--~Yla~l~~~l~~~~~~~~~~~v~f~if~~~sn~REe~Lllrlfs~~L~~eI~~v~~i~~l~ 822 (1401)
T KOG2128|consen 748 ELYQQLFYLLQ---TDP--CYLASLILQLPIFRSTELMDIVVFTIFGYASNQREEILLLRLFSEVLQREIEKVDSIQDLL 822 (1401)
T ss_pred HHHHHHHHHHh---cCH--HHHHHHHHhhhhhhhhhhhhHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34555544443 333 233455566666554444 4677788886 36889999999999999777766666
Q ss_pred ccCchhHHHHHHHHH-HhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCC-------------------------hhhH
Q psy14861 1003 RGNSLGSKLMAFCFK-IYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP-------------------------SENI 1056 (1648)
Q Consensus 1003 R~NS~~Tkll~~y~r-~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~-------------------------~e~~ 1056 (1648)
-+ |+|.+++..|.| ..|..+|+.++.|+++.+.+.+++.+++||..+++ .+.+
T Consensus 823 sn-~~~~~mi~~y~R~srg~~~lr~il~~Vvk~l~d~~~l~~ds~P~~iyk~~vn~~~~~~sp~~~~e~al~~~~vkn~~ 901 (1401)
T KOG2128|consen 823 SN-SFVIKMIVDYNRRSRGQNILRSILVPVVKELADDPHLESDSNPVWIYKAFVNQFESQTSPYLVHEQALENPEVKNLL 901 (1401)
T ss_pred hc-chHHHHHHHHhccccccHHHHHHHHHHHHHHhhCCcccccCchHHHhHHhhhhhhccCCcccchhhhhcCHhHHHHH
Confidence 55 999999999997 77999999999999999999889999999988863 1235
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhhCCCCCCccc-hhHHHHHHhHhhhhhccCCcccCCccC
Q psy14861 1057 ENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNI-GAVGTVIFLRFINPAIVTPQEMGIINK 1135 (1648)
Q Consensus 1057 ~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~kFP~~~e~~~-~aVg~fiFLRFicPAIvsPe~fgl~~~ 1135 (1648)
..+..+|+.++++|++++.+|++.+|+++||+|..+..+...+||+..+..+ .+||+|++.||.+||||+|+.+-....
T Consensus 902 ~~~l~~Lr~v~dkflda~~~sv~~iPy~lRyv~k~L~~~~~~~fP~a~~~ei~~vig~~~y~rfvsp~ivsp~~~~~~~g 981 (1401)
T KOG2128|consen 902 SSRLRNLRKVTDKFLDAVLSSVDLIPYGLRYVAKLLKNSLHRKFPAATEDEILKVIGNFLYSRFVSPAIVSPDTDRLLGG 981 (1401)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHHHHhccccccCcchhhhhcc
Confidence 6678999999999999999999999999999999999999999998776664 699999999999999999997777777
Q ss_pred CCChhhhhhhHHHHHHHHHhhccCCCC-CccccchhHHHHHHHHHHHHHHHHHhhcCCCCCC-----------cCCCccc
Q psy14861 1136 TVPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIARQFFIQIASDCVTED-----------AGAHSMS 1203 (1648)
Q Consensus 1136 ~p~~~~rR~L~liaKvLQnlAN~~~F~-KE~~m~~lN~fi~~~~~~~~~fl~~is~~~~~~~-----------~~~~~~~ 1203 (1648)
.++..+|+||.-|+|++|..|++..+. +-.||.|||+|+..+.+.+..++..+..+++.++ ...+|+.
T Consensus 982 ~~t~dqrknl~sI~~~~~~~as~~~~~n~~~Fls~Ln~~~~~~~qk~~~~l~kl~~V~~le~~f~~d~y~dLv~~~kptL 1061 (1401)
T KOG2128|consen 982 QITDDQRKNLGSIAKILQSAASNKEKKNFLHFLSPLNPYLKEIEQKFIDYLRKLVNVPELEEKFEFDSYTDLVPVSKPTL 1061 (1401)
T ss_pred ccchHHHHhhHHHHHHHHHHhccccccchHHHHhhHHHHHHHHHHHHHHHHHHhcCcccHHHHHhHHhHhhhccccCceE
Confidence 889999999999999999999999884 5579999999999999999999999988877653 1345889
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhhhccCccccccCCCccchHHHHHhhcCCCCC
Q psy14861 1204 FISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEH 1257 (1648)
Q Consensus 1204 ~i~~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~~~~~~~D~L~~lL~~LG~P~~ 1257 (1648)
+++.+++..+|..|.+|.+.|++ ...+|+|.+++..+|.-|.
T Consensus 1062 yl~~~~I~~~~~~Ll~~~d~i~~------------~~~~~~L~eLl~sl~~vp~ 1103 (1401)
T KOG2128|consen 1062 YLTIKEILDTHELLLENLDAIAP------------PESNDPLIELLESLGLVPT 1103 (1401)
T ss_pred EeeHHHHHHHHHHHHHHHhcCCC------------chhhhHHHHHhcCcccCCc
Confidence 99999999999999999999973 1356889999888887663
No 45
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.83 E-value=4.5e-21 Score=204.06 Aligned_cols=143 Identities=25% Similarity=0.445 Sum_probs=109.1
Q ss_pred CeEEecCCCCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHh-cccccCCeEEEEEcCCCCCCCcccHHHHHHHHHHhhHH
Q psy14861 1304 NIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTM-KPFCHAPYELVIDFTHASSENRFKTEFLQKWFYVLSEV 1382 (1648)
Q Consensus 1304 ~ify~~g~skdG~PV~v~i~r~~~~~~~D~e~LiY~vl~tl-~~~~~~~f~lV~D~T~f~~~n~p~~~~l~~~~~llP~~ 1382 (1648)
.+||.||.|++|+||+|++++++ ++..|+|.+++|+++++ +..++++|+||+|+|+++..++|+..|++++++++|..
T Consensus 2 ~~~~~gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~l~~~~~~~~f~vVid~~~~~~~~~~~~~~l~~~~~~l~~~ 80 (149)
T PF13716_consen 2 IFFYPGGRDREGRPVVVFIASRL-PSSDDLERLLLYLLSTLSEEVVDKPFSVVIDHTGFSRSSEPSLSWLKQLYKLLPRK 80 (149)
T ss_dssp SE-EEEEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHHH-TTTTTS-EEEEEE-TT--GGG---HHHHHHTTTSS-HH
T ss_pred eEEEecccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHhhhHHhcCCCEEEEEEcCCCccccCCchHHHHHHHHHHHHH
Confidence 46799999999999999999999 66679999999999999 77899999999999999999999999999999999999
Q ss_pred HHhcccEEEEEcCChHHHHHHHHhhc-cccccccC-CceEEEcCChhhhhhcCCCCCc--ccCccccccccc
Q psy14861 1383 AYANIHAAYIYNCNSWVREYTKYHEK-ILLPIFRN-NKKLIFLDSPSKLNDYIDHNQQ--KLPGATLALDED 1450 (1648)
Q Consensus 1383 ~~kNl~~iYi~Npn~~~r~~~k~~~~-~~s~~~k~-~~ki~fi~sl~eL~~~i~~~~l--~LP~~tl~l~~d 1450 (1648)
+++|++++|++|||+|+|.+.+...+ +.+. ++ ++|+++++|+++|.++||++|+ .|| .++++++|
T Consensus 81 ~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~--~~~~~kv~~~~sl~~L~~~i~~~qL~~~lp-~~~~~d~~ 149 (149)
T PF13716_consen 81 YKKNLKKVYIVHPNWFLKKILATLLRPFVSS--KFWKKKVVYVSSLSELSKHIDPSQLPESLP-GVLQYDHE 149 (149)
T ss_dssp HHHTEEEEEEES--HHHHHHHHHTTTTGGGG--TT--TTEEEESSTCGGGGTSGGGG-------HHH-----
T ss_pred HhhceEEEEEECCCHHHHHHHHHHhcccccc--cccceEEEEECCHHHHHhhCCHHHhcccCC-CEEecCcC
Confidence 99999999999999999999955544 4455 77 8999999999999999999999 999 67777654
No 46
>KOG4406|consensus
Probab=99.64 E-value=3.1e-16 Score=181.28 Aligned_cols=160 Identities=20% Similarity=0.306 Sum_probs=140.7
Q ss_pred chhHHHHHHHHhhhcchhhhhccccCeEEecCCCCCCCcEEEEEeeecC-CCCCCHHHHHHHHHHHhcccccCCeEEEEE
Q psy14861 1279 NNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYK-TFETNADLLIYHVILTMKPFCHAPYELVID 1357 (1648)
Q Consensus 1279 ~~~~~eFM~R~~~~~~ed~~~i~~~~ify~~g~skdG~PV~v~i~r~~~-~~~~D~e~LiY~vl~tl~~~~~~~f~lV~D 1357 (1648)
...||++| ||. .+-+. +...|.|++||+||+|.++|+. ..++|.-.++-+...+++.++.++|.+||.
T Consensus 68 ed~fyd~~-~H~---~ei~q-------vi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve~DYt~vYf 136 (467)
T KOG4406|consen 68 EDPFYDIA-RHE---REILQ-------VIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVENDYTLVYF 136 (467)
T ss_pred cccHHHHH-Hhh---hheee-------eccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHhccceeeeh
Confidence 34699988 443 11111 2223369999999999999994 456777779999999999999999999999
Q ss_pred cCCCCCCCcccHHHHHHHHHHhhHHHHhcccEEEEEcCChHHHHHHHHhhccccccccCCceEEEcCChhhhhhcCCCCC
Q psy14861 1358 FTHASSENRFKTEFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFLDSPSKLNDYIDHNQ 1437 (1648)
Q Consensus 1358 ~T~f~~~n~p~~~~l~~~~~llP~~~~kNl~~iYi~Npn~~~r~~~k~~~~~~s~~~k~~~ki~fi~sl~eL~~~i~~~~ 1437 (1648)
|.|..+.|.|..+|+...|.-+++.+.||++++|++||+|+.|..|..+.++++. ||.+|++++|+++||.+++..++
T Consensus 137 h~gl~s~nkp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~--KF~rKi~Y~n~lseL~~~l~l~r 214 (467)
T KOG4406|consen 137 HHGLPSDNKPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISL--KFTRKIIYFNSLSELFEALKLNR 214 (467)
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcch--hhhceeEEeehHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred cccCcccccccccc
Q psy14861 1438 QKLPGATLALDEDL 1451 (1648)
Q Consensus 1438 l~LP~~tl~l~~d~ 1451 (1648)
|.||++++.+++-+
T Consensus 215 L~lP~~v~~~D~~~ 228 (467)
T KOG4406|consen 215 LKLPPEVLKHDDKL 228 (467)
T ss_pred hcCChhhhhhhhcc
Confidence 99999999986643
No 47
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.60 E-value=1.1e-14 Score=178.83 Aligned_cols=240 Identities=21% Similarity=0.409 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHhccCCcccccccCchhHHHHHHHHHH-hhHHHHHHHHHHhHHHHhccCCCccccCCCCC---------
Q psy14861 339 PPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKI-YGASYLQNLLEPLISPLLDKAHVAFEVDPARL--------- 408 (1648)
Q Consensus 339 ~~LL~~Li~~EI~~t~~~~tLfR~NS~~tkll~~y~r~-~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki--------- 408 (1648)
..+++.|+..||+-++-.+++.|||.+..|+|..|+|. .|+.++++....++.++...+++-..++|.-+
T Consensus 438 v~~~q~L~R~evE~~sl~qsl~rG~l~~hrnm~nyfR~sqg~~Alre~r~~i~~~v~~~E~levdinpllvy~aLlnk~~ 517 (1054)
T COG5261 438 VSLFQMLLRTEVEATSLVQSLLRGNLPVHRNMTNYFRRSQGQAALREIRYQIINDVAIHEDLEVDINPLLVYRALLNKGQ 517 (1054)
T ss_pred HHHHHHHHHHHhhccHHHHHHHhccchHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhchhhhccccHHHHHHHHHhhcC
Confidence 44667777779998888899999999999999988865 89999999998999988765544444444322
Q ss_pred -CChhhH-------------------HHHHHHHHHH-HHHHHHHHHhhcccCCHHHHHHHHHHH---HHH-HhHCCCCCc
Q psy14861 409 -DPSENI-------------------ENNRRELISW-TKKVFDAIIDSADNFPPQLRSMCHCLY---QVL-SKRFPLQPQ 463 (1648)
Q Consensus 409 -~~~e~i-------------------e~n~~~L~~~-~~~~l~~I~~S~~~~P~~lR~Ic~~i~---~~v-~~rFp~~~~ 463 (1648)
.++++. ......|..+ ++.+.+++..+.+.+|+++|++|..|+ +.. ..-||.-..
T Consensus 518 ls~Dkdlel~~s~e~v~e~l~vM~~v~~Ss~klLels~e~i~~aVy~~l~~~g~g~RFvce~i~~~Fel~P~~lf~si~~ 597 (1054)
T COG5261 518 LSPDKDLELLTSNEEVSEFLAVMNAVQESSAKLLELSTERILDAVYNSLDEIGYGIRFVCELIRVVFELTPNRLFPSISD 597 (1054)
T ss_pred cCcchhhhhcchhHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHhhcCHHHHHHHHHH
Confidence 222211 1222445555 899999999999999999999999997 111 111221111
Q ss_pred ------------ccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccccCccccCcchHHH
Q psy14861 464 ------------NNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFSKEAHMIPFNDF 531 (1648)
Q Consensus 464 ------------~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f~KE~~m~~lN~f 531 (1648)
..+.+||+|+|+||++||+|+|+.|++.+..|+...|+ |..++|++|.+++...+.+ +..||++|
T Consensus 598 sr~Lr~~cf~~~~~lg~Ig~f~~~~fv~e~lvsp~~~~lkDs~~~~n~rK-l~tlskil~~vFei~s~d~--F~~PL~pf 674 (1054)
T COG5261 598 SRCLRTICFAEIDSLGLIGGFFFLRFVNEALVSPQTSMLKDSCPSDNVRK-LATLSKILQSVFEITSSDK--FDVPLQPF 674 (1054)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcccHhhcCcchhhcccCChhhHHHH-HHHHHHHHHHHhccccccc--cccchHHH
Confidence 12358999999999999999999999999988888888 9999999999999999865 99999999
Q ss_pred HHHhHHHHHHHHHHhhcCCCCcCC-----------CCCCCcccChHHHHHHHHHHHHHHHHH
Q psy14861 532 LRAHFVIARQFFIQIASDCVTEDA-----------GAHSMSFISDTNVLALHRLLYNHQEKI 582 (1648)
Q Consensus 532 i~~~~~~~~~fl~~i~~~~~~e~~-----------~~~~~~~is~~ei~~LHr~L~~~~~~I 582 (1648)
+.+..+++...+..+..+++.|.. ...++.|.. .+++..|..+.++.+..
T Consensus 675 ~~e~kek~~~~L~kL~nv~d~e~yfefd~y~dLvk~sraleyl~-~~~~l~~~~~ieyL~~~ 735 (1054)
T COG5261 675 LKEYKEKVHNLLRKLGNVGDFEEYFEFDQYIDLVKKSRALEYLV-NEIYLTHEIIIEYLDNL 735 (1054)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHhHHHHHHHhcCccceeeeh-HHHHHHHHHHHHHHHcc
Confidence 999999999999999988877653 123444533 45777787777776654
No 48
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.59 E-value=7.8e-15 Score=179.97 Aligned_cols=244 Identities=21% Similarity=0.370 Sum_probs=185.0
Q ss_pred CcHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHH-HhchHHHHHHHHHhHHHHHhcCCCccccCCCCC------
Q psy14861 978 HMLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFK-IYGASYLQNLLEPLISPLLDKAHVAFEVDPARL------ 1050 (1648)
Q Consensus 978 ~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~Tkll~~y~r-~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki------ 1050 (1648)
+....+++.++..||+-++-.+++.|||.+..|.|..|.| ..|+.++++....++.++...+++-..++|.-+
T Consensus 435 hlsv~~~q~L~R~evE~~sl~qsl~rG~l~~hrnm~nyfR~sqg~~Alre~r~~i~~~v~~~E~levdinpllvy~aLln 514 (1054)
T COG5261 435 HLSVSLFQMLLRTEVEATSLVQSLLRGNLPVHRNMTNYFRRSQGQAALREIRYQIINDVAIHEDLEVDINPLLVYRALLN 514 (1054)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhccchHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhchhhhccccHHHHHHHHHh
Confidence 4455677778888999888899999999999999997775 788999999988999998875544444444322
Q ss_pred ----CChh---------hHHH----------HHHHHHHH-HHHHHHHHHhhcccCCHHHHHHHHHHHHH---H-HhhCCC
Q psy14861 1051 ----DPSE---------NIEN----------NRRELISW-TKKVFDAIIDSADNFPPQLRSMCHCLYQV---L-SKRFPL 1102 (1648)
Q Consensus 1051 ----~~~e---------~~~~----------N~~~L~~~-~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~---v-~~kFP~ 1102 (1648)
.+.+ .... .-..|..+ ++.+.+++..+.+.+|+++|++|..|+-. - ..-||.
T Consensus 515 k~~ls~Dkdlel~~s~e~v~e~l~vM~~v~~Ss~klLels~e~i~~aVy~~l~~~g~g~RFvce~i~~~Fel~P~~lf~s 594 (1054)
T COG5261 515 KGQLSPDKDLELLTSNEEVSEFLAVMNAVQESSAKLLELSTERILDAVYNSLDEIGYGIRFVCELIRVVFELTPNRLFPS 594 (1054)
T ss_pred hcCcCcchhhhhcchhHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHhhcCHHHHHHH
Confidence 1111 1111 12344444 88999999999999999999999999721 1 111221
Q ss_pred CCCc------------cchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCCCCccccchh
Q psy14861 1103 QPQN------------NIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFSKEAHMIPF 1170 (1648)
Q Consensus 1103 ~~e~------------~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F~KE~~m~~l 1170 (1648)
-... .+.+||+|+|+||++||+|+|+.|++.+..|+...|+ |..++|++|.+++...+.+ +..||
T Consensus 595 i~~sr~Lr~~cf~~~~~lg~Ig~f~~~~fv~e~lvsp~~~~lkDs~~~~n~rK-l~tlskil~~vFei~s~d~--F~~PL 671 (1054)
T COG5261 595 ISDSRCLRTICFAEIDSLGLIGGFFFLRFVNEALVSPQTSMLKDSCPSDNVRK-LATLSKILQSVFEITSSDK--FDVPL 671 (1054)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhcccHhhcCcchhhcccCChhhHHHH-HHHHHHHHHHHhccccccc--cccch
Confidence 1111 1357999999999999999999999999988888888 9999999999999999855 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCc----------CCCcccccchhhHHHHHHHHHHHHHHH
Q psy14861 1171 NDFLRAHFVIARQFFIQIASDCVTEDA----------GAHSMSFISDTNVLALHRLLYNHQEKI 1224 (1648)
Q Consensus 1171 N~fi~~~~~~~~~fl~~is~~~~~~~~----------~~~~~~~i~~~~i~~LHr~L~~~~~~I 1224 (1648)
++|+.+..+++...+..+..+++.+.. ...+......++++..|-.+.++.+..
T Consensus 672 ~pf~~e~kek~~~~L~kL~nv~d~e~yfefd~y~dLvk~sraleyl~~~~~l~~~~~ieyL~~~ 735 (1054)
T COG5261 672 QPFLKEYKEKVHNLLRKLGNVGDFEEYFEFDQYIDLVKKSRALEYLVNEIYLTHEIIIEYLDNL 735 (1054)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHhHHHHHHHhcCccceeeehHHHHHHHHHHHHHHHcc
Confidence 999999999999999999888776532 222223344567777787777776654
No 49
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.30 E-value=7.2e-12 Score=134.15 Aligned_cols=129 Identities=21% Similarity=0.333 Sum_probs=113.0
Q ss_pred CCCCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHhcccc--------cCCeEEEEEcCCCCCCCcccHHHHHHHHHHhhH
Q psy14861 1310 GKSRNGHPVFYYIARRYKTFETNADLLIYHVILTMKPFC--------HAPYELVIDFTHASSENRFKTEFLQKWFYVLSE 1381 (1648)
Q Consensus 1310 g~skdG~PV~v~i~r~~~~~~~D~e~LiY~vl~tl~~~~--------~~~f~lV~D~T~f~~~n~p~~~~l~~~~~llP~ 1381 (1648)
|.|++||||+++.+++++....+.+.++.+++.+++... ...+.+|+|+++++..+ ++.+|+++++++++.
T Consensus 14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~-~~~~~lk~~~~~~~~ 92 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSN-PDLSVLRKILKILQD 92 (158)
T ss_pred CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCccc-ccHHHHHHHHHHHHH
Confidence 689999999999999998888999888888777765432 24699999999998866 889999999999999
Q ss_pred HHHhcccEEEEEcCChHHHHHHHHhhccccccccCCceEEEcCC--hhhhhhcCCCCCcccCcc
Q psy14861 1382 VAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFLDS--PSKLNDYIDHNQQKLPGA 1443 (1648)
Q Consensus 1382 ~~~kNl~~iYi~Npn~~~r~~~k~~~~~~s~~~k~~~ki~fi~s--l~eL~~~i~~~~l~LP~~ 1443 (1648)
.+..+++++||+||++|++..++...+++++ +...|++++++ .++|.+++|.++ ||.+
T Consensus 93 ~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~--~~~~ki~~~~~~~~~~L~~~i~~~~--lP~~ 152 (158)
T smart00516 93 HYPERLGKVLIINPPWFFRVLWKIIKPFLDE--KTREKIRFVGNDSKEELLEYIDPEQ--LPEE 152 (158)
T ss_pred HhHHHhCeEEEECCCHHHHHHHHHHHhhcCh--hhhccEEEeCCCCHHHHHhhCCHhh--CcHh
Confidence 9999999999999999999999999999988 88899999998 788999988665 5543
No 50
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.22 E-value=3.8e-11 Score=127.27 Aligned_cols=133 Identities=23% Similarity=0.372 Sum_probs=113.5
Q ss_pred CeEEecCCCCCCCcEEEEEeeecC-CCCCCHHHHHHHHHHHhccccc------CCeEEEEEcCCCCCCCcc-cHHHHHHH
Q psy14861 1304 NIFYQAGKSRNGHPVFYYIARRYK-TFETNADLLIYHVILTMKPFCH------APYELVIDFTHASSENRF-KTEFLQKW 1375 (1648)
Q Consensus 1304 ~ify~~g~skdG~PV~v~i~r~~~-~~~~D~e~LiY~vl~tl~~~~~------~~f~lV~D~T~f~~~n~p-~~~~l~~~ 1375 (1648)
.++|.+|.|++|+||+++..++.+ ....+.+.++.+.+..++.... ..+.+|+|+++++..+.. ..++++++
T Consensus 9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~ 88 (157)
T cd00170 9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKI 88 (157)
T ss_pred cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHH
Confidence 678888889999999999999643 3455667787777777665432 479999999999876653 67899999
Q ss_pred HHHhhHHHHhcccEEEEEcCChHHHHHHHHhhccccccccCCceEEEcCC-hhhhhhcCCCCCc
Q psy14861 1376 FYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFLDS-PSKLNDYIDHNQQ 1438 (1648)
Q Consensus 1376 ~~llP~~~~kNl~~iYi~Npn~~~r~~~k~~~~~~s~~~k~~~ki~fi~s-l~eL~~~i~~~~l 1438 (1648)
+.+++..+.++++++|++||+++++..++...+++++ ++..|++++++ .++|.+++|.+++
T Consensus 89 ~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~--~~~~ki~~~~~~~~~L~~~i~~~~L 150 (157)
T cd00170 89 LKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSE--KTRKKIVFLGSDKEELLKYIDKEQL 150 (157)
T ss_pred HHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCH--hhhhhEEEecCCHHHHHhhCChhhC
Confidence 9999999999999999999999999999999988888 88899999999 8999999997764
No 51
>KOG1470|consensus
Probab=98.76 E-value=2.2e-08 Score=116.54 Aligned_cols=133 Identities=20% Similarity=0.339 Sum_probs=108.4
Q ss_pred cccCeEEecCCCCCCCcEEEEEeeecCCCCCCHH----HHHHHHHHHhcccc--cCCeEEEEEcCCCCCCCcccHHHHHH
Q psy14861 1301 KSLNIFYQAGKSRNGHPVFYYIARRYKTFETNAD----LLIYHVILTMKPFC--HAPYELVIDFTHASSENRFKTEFLQK 1374 (1648)
Q Consensus 1301 ~~~~ify~~g~skdG~PV~v~i~r~~~~~~~D~e----~LiY~vl~tl~~~~--~~~f~lV~D~T~f~~~n~p~~~~l~~ 1374 (1648)
.+++++.+| .|++||||+|+.++.-..+.-+.+ +++|.+-.+...+- ...+.+++|+|+|+.+| ++.+..+.
T Consensus 96 ~tGK~yi~G-~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN-~d~~~~k~ 173 (324)
T KOG1470|consen 96 ETGKAYILG-HDKDGRPVLYLRPRPHRQNTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSN-PDIKFLKE 173 (324)
T ss_pred hcCcEEEec-ccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccC-CCcHHHHH
Confidence 345666666 999999999999887766666553 34444433322221 23399999999999885 67889999
Q ss_pred HHHHhhHHHHhcccEEEEEcCChHHHHHHHHhhccccccccCCceEEEcCChhhhhhcCCCCC
Q psy14861 1375 WFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFLDSPSKLNDYIDHNQ 1437 (1648)
Q Consensus 1375 ~~~llP~~~~kNl~~iYi~Npn~~~r~~~k~~~~~~s~~~k~~~ki~fi~sl~eL~~~i~~~~ 1437 (1648)
++..+-..|.+.|..++++||++.|..+|+...+|+.+ +...|++|+.+-.++.++||.++
T Consensus 174 ~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp--~t~~Kv~F~~~~~~l~~~~d~~~ 234 (324)
T KOG1470|consen 174 LLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDP--KTASKVKFVEPKDDLSEYFDESQ 234 (324)
T ss_pred HHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccCh--hhhceeEEecChhHHHhhCCccc
Confidence 99999999999999999999999999999999999988 77899999999999999999887
No 52
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=98.65 E-value=2.2e-08 Score=107.39 Aligned_cols=135 Identities=24% Similarity=0.368 Sum_probs=96.4
Q ss_pred ccCeEEecCCCCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHhccc--------ccCCeEEEEEcCCCCCCCccc--HHH
Q psy14861 1302 SLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTMKPF--------CHAPYELVIDFTHASSENRFK--TEF 1371 (1648)
Q Consensus 1302 ~~~ify~~g~skdG~PV~v~i~r~~~~~~~D~e~LiY~vl~tl~~~--------~~~~f~lV~D~T~f~~~n~p~--~~~ 1371 (1648)
.....|-.|.|++|+||+++.+++++......+.++-+++..++.. ....+.+|+|+++++..+-+. .+.
T Consensus 5 ~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~~~~ 84 (159)
T PF00650_consen 5 KSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWPISF 84 (159)
T ss_dssp TTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHHHHH
T ss_pred CCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccchhhh
Confidence 3467788888999999999999999877766544444444433321 235688999999998654432 778
Q ss_pred HHHHHHHhhHHHHhcccEEEEEcCChHHHHHHHHhhccccccccCCceEEEcCCh---hhhhhcCCCCCc
Q psy14861 1372 LQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFLDSP---SKLNDYIDHNQQ 1438 (1648)
Q Consensus 1372 l~~~~~llP~~~~kNl~~iYi~Npn~~~r~~~k~~~~~~s~~~k~~~ki~fi~sl---~eL~~~i~~~~l 1438 (1648)
++.+.+++-..+...++.+|++|++++++..|+...+++++ +...|++++++. ++|.+++|.+++
T Consensus 85 ~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~--~~~~ki~~~~~~~~~~~l~~~i~~~~l 152 (159)
T PF00650_consen 85 LKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSP--KTREKIVFHSGSDWKAKLKEYIDPEQL 152 (159)
T ss_dssp HHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-H--HHHCTEEEECTTCHCHHHCCCSTGGGS
T ss_pred hhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCH--hhheeEEEECCcccHHHHHhhCCHhHC
Confidence 89999999999999999999999999999999999999988 777899999654 368888886643
No 53
>KOG1471|consensus
Probab=97.07 E-value=0.0011 Score=79.71 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=98.5
Q ss_pred EEecCCCCCCCcEEEEEeeecCCCCC-----CHHHHHHHH----------HHHhcc---cccCCeEEEEEcCCCCCCCc-
Q psy14861 1306 FYQAGKSRNGHPVFYYIARRYKTFET-----NADLLIYHV----------ILTMKP---FCHAPYELVIDFTHASSENR- 1366 (1648)
Q Consensus 1306 fy~~g~skdG~PV~v~i~r~~~~~~~-----D~e~LiY~v----------l~tl~~---~~~~~f~lV~D~T~f~~~n~- 1366 (1648)
....|++++|+||.+--........+ ..+.+.|++ +..... ..-..+..|+|..|++..+.
T Consensus 97 ~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~ 176 (317)
T KOG1471|consen 97 QGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLL 176 (317)
T ss_pred ccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHH
Confidence 34457789999998888877754433 223333333 222111 12345779999999987765
Q ss_pred -ccHHHHHHHHHHhhHHHHhcccEEEEEcCChHHHHHHHHhhccccccccCCceEE--EcCChhhhhhcCCCCCc
Q psy14861 1367 -FKTEFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLI--FLDSPSKLNDYIDHNQQ 1438 (1648)
Q Consensus 1367 -p~~~~l~~~~~llP~~~~kNl~~iYi~Npn~~~r~~~k~~~~~~s~~~k~~~ki~--fi~sl~eL~~~i~~~~l 1438 (1648)
+....++++...+-..|...++++||+|+++|+...|+.+.+|+.+ +...|++ .-++.+.|.++|+++.|
T Consensus 177 ~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~--kt~~ki~~~~~~~~~~L~k~i~~~~L 249 (317)
T KOG1471|consen 177 KPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDE--KTRKKIHVLHSKDKESLLKYIPPEVL 249 (317)
T ss_pred HHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCH--HHHhhheecCCCchhhhhhhCCHhhC
Confidence 5567788888888999999999999999999999999999999998 7888888 34567789999998765
No 54
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=93.83 E-value=0.05 Score=58.09 Aligned_cols=40 Identities=30% Similarity=0.611 Sum_probs=33.3
Q ss_pred cceeccCccCCCCcEEEEEeccccccCCchHHHHHHHHHHh
Q psy14861 662 NIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTM 702 (1648)
Q Consensus 662 ~~f~~~~~s~~g~pV~~~i~rr~~~~~~d~e~LvY~il~tl 702 (1648)
.+||.+|.+++|+||+|++++++ ....|.|.+++|++.++
T Consensus 2 ~~~~~gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~l 41 (149)
T PF13716_consen 2 IFFYPGGRDREGRPVVVFIASRL-PSSDDLERLLLYLLSTL 41 (149)
T ss_dssp SE-EEEEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHHH
T ss_pred eEEEecccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHhh
Confidence 36799999999999999999999 66679999999999888
No 55
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=90.14 E-value=6.6 Score=54.67 Aligned_cols=213 Identities=16% Similarity=0.214 Sum_probs=126.2
Q ss_pred CchHHHHHHHHHHhhhhhccchh----hHHHHHHHHhhccc---------CCcchhhHHHHHHHHHHHHHHcc-----cc
Q psy14861 689 TNADLLIYHVILTMYVRHIDMTV----HAVHIKTKLYVRHI---------DMTVHAVHIKTKLCNLIEAMMRR-----RD 750 (1648)
Q Consensus 689 ~d~e~LvY~il~tl~~~~iD~s~----~~l~l~~~~y~~~l---------~~~~~~~rik~k~c~L~~~~~~~-----~~ 750 (1648)
.+.-.=|.||++.+ +..+.-.+ ..++..+++||+.. .+...--+++.-||-+++.+-.. .+
T Consensus 260 d~LR~ev~hVl~ll-Ae~l~p~~l~~d~~L~~~lv~fIk~~~~fL~~~~~q~~~elQ~LR~~fc~ll~~l~~~~~~~~se 338 (1120)
T PF14228_consen 260 DRLRTEVTHVLRLL-AEFLKPGVLNDDWILRNNLVEFIKETKQFLEDEEVQNDWELQRLRYHFCGLLRNLAVGIVKAKSE 338 (1120)
T ss_pred hhHHHHHHHHHHHH-HhhcChhhccchHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 33444467777333 32233211 13444566666543 12233447888999998776433 22
Q ss_pred ccccchhhHhHHHHHHHHHHhhcccCCCcCC-----------------CCCCCc---------chhhhhchHHHHHHHHH
Q psy14861 751 DLAFRREMSFRNKLVDYLMDWVLGSANQVTI-----------------PPTPGE---------SFVSISRDLDQACMDAV 804 (1648)
Q Consensus 751 ~l~~~~~~~~RN~~l~~~~~W~~~~~~~~~~-----------------~~~~~d---------~~~~l~rDLd~~c~kal 804 (1648)
- | .+..|-.+..++-+|-..+.+.... .....| +++..+++|..+.+.|+
T Consensus 339 ~--f--pfe~RkslF~l~~eWCGy~~~~~~~~~~s~~rre~~r~~~~~~~r~kd~~~~~~~~~~Ie~~~~~L~~aAl~AM 414 (1120)
T PF14228_consen 339 W--F--PFEARKSLFNLFEEWCGYSPSQWGQDGRSDYRREVERYKSSQLQREKDSRERATAEMEIEEQKRNLRTAALSAM 414 (1120)
T ss_pred c--C--CHHHHHHHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2 4678999999999998654321000 000111 24444579999999999
Q ss_pred HHHhcCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhcccchhhhhhccCcCc-----------------cCcc-c
Q psy14861 805 AALLKGLPLQPEESDKGDLMEAKSSLFLKYFTLFMNLLNDCTDSQELDKEASRDRSK-----------------NDSS-S 866 (1648)
Q Consensus 805 a~Ll~~LpL~p~~~~~~~~~~~ks~~F~~yF~~f~~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~-~ 866 (1648)
|.|+.|=..... ... .=++.|+-.=.+++..++-...+...-.|+.+ +++- .
T Consensus 415 AaLc~GPif~~~---~~~-------~~grmlsWId~if~s~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1120)
T PF14228_consen 415 AALCGGPIFDDN---ASK-------PSGRMLSWIDSIFNSPSDRMPIGYSPLDPRTMSYSKHAGEGPRGATGRDKQKSSH 484 (1120)
T ss_pred HHHhcCCccccc---hhc-------ccchHHHHHHHHHcCCCCCCcCCCCCCCccCcccccccCcccccccchhhhccch
Confidence 999966433111 000 11666666666666544332221100011111 2222 2
Q ss_pred hhHHHHHHHHHHHHhccccccchhhccccccCChhhHHHHHHHHHHhcccc
Q psy14861 867 NLRSSIIEAMSNLLSANIDSGLMHSIALGYHQDLQTRAAFMEVLTKILQQG 917 (1648)
Q Consensus 867 ~l~~~~i~alsnLl~aNid~gl~~~l~~gy~~d~~~R~aFl~v~~~il~~g 917 (1648)
......-.||.|||..|.| -+.+++..+|..++.+-.....++++++.+.
T Consensus 485 ~~~~lgr~AL~nLL~~N~d-Ll~~~IdrCYss~~~va~gYF~vlaev~~~~ 534 (1120)
T PF14228_consen 485 ARHSLGRRALKNLLEHNPD-LLDWVIDRCYSSSPRVAEGYFTVLAEVFSER 534 (1120)
T ss_pred HHHHHHHHHHHHHHHhhHH-HHHHHHHHhcCCChhHHHHHHHHHHHHHHcC
Confidence 3447778899999999999 5899999999999999888889999999754
No 56
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=89.01 E-value=1.3 Score=56.49 Aligned_cols=129 Identities=16% Similarity=0.228 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChh
Q psy14861 1062 ELISWTKKVFDAIID-SADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPP 1140 (1648)
Q Consensus 1062 ~L~~~~~~~l~~I~~-S~~~~P~~lR~Ic~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~ 1140 (1648)
.|..+++.++++|.+ .-+.+|+.++|++..+=+...+.--.+++..+..=+.-+.|||=.-.|-+|+- +.+-+-++.
T Consensus 364 tlqkfVDdlf~si~s~~~~~~P~aIKY~FDfLDeqA~k~~i~Dpev~H~WKtNsLpLRFWVNiiKNP~F--vFDi~ks~~ 441 (539)
T PF08337_consen 364 TLQKFVDDLFESIFSVRNSKLPLAIKYFFDFLDEQAEKHGITDPEVLHIWKTNSLPLRFWVNIIKNPQF--VFDIHKSPT 441 (539)
T ss_dssp HHHHHHHHHHHHHT-SCCCB--HHHHHHHHHHHHHHHTTT---HHHHHHHHHCCTTTTCHHHHHH-GGG--TBS----HH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCccHHHHhcccHHHHHhcCCCCcchhhHHhhhhhHHHHHHHHhcCcce--EEeeecCcc
Confidence 355566667777777 47889999999999987766555322233334455678999999999999995 334445899
Q ss_pred hhhhhHHHHHHHHHhhccCCC--CCccccchhHHH-----HHHHHHHHHHHHHHhhcCCCCC
Q psy14861 1141 VKRGLMLMSKILQNIANHVEF--SKEAHMIPFNDF-----LRAHFVIARQFFIQIASDCVTE 1195 (1648)
Q Consensus 1141 ~rR~L~liaKvLQnlAN~~~F--~KE~~m~~lN~f-----i~~~~~~~~~fl~~is~~~~~~ 1195 (1648)
+-..|..||..+...+..++- +|+ .|-|.. |-..++.+.+|+.+|...|+..
T Consensus 442 vDacLSVIAQtfmDaCS~se~~lgkd---SPsnKLLyAKdIp~Yk~~V~~YY~~I~~~p~vs 500 (539)
T PF08337_consen 442 VDACLSVIAQTFMDACSTSEHKLGKD---SPSNKLLYAKDIPRYKKMVERYYKDIRNMPPVS 500 (539)
T ss_dssp HHHHHHHHHHHHHHHHSSS-----TT---S-HHHHHCTTTHHHHHHHHHHHHHHHHHS----
T ss_pred hhhHHHHHHHHHHHhhcccccccCCC---CcchhccccccHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999887654 343 233322 3456777889999998765543
No 57
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=80.90 E-value=5.2 Score=51.29 Aligned_cols=130 Identities=17% Similarity=0.231 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCC
Q psy14861 417 NRRELISWTKKVFDAIID-SADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTV 495 (1648)
Q Consensus 417 n~~~L~~~~~~~l~~I~~-S~~~~P~~lR~Ic~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~ 495 (1648)
-...|..+++.++++|.+ .-+.+|+.++|++.-+=+...+.--.+|+..+..=++-+-|||=--.|-+|+-. .+.+-
T Consensus 361 tKgtlqkfVDdlf~si~s~~~~~~P~aIKY~FDfLDeqA~k~~i~Dpev~H~WKtNsLpLRFWVNiiKNP~Fv--FDi~k 438 (539)
T PF08337_consen 361 TKGTLQKFVDDLFESIFSVRNSKLPLAIKYFFDFLDEQAEKHGITDPEVLHIWKTNSLPLRFWVNIIKNPQFV--FDIHK 438 (539)
T ss_dssp HHHHHHHHHHHHHHHHT-SCCCB--HHHHHHHHHHHHHHHTTT---HHHHHHHHHCCTTTTCHHHHHH-GGGT--BS---
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccHHHHhcccHHHHHhcCCCCcchhhHHhhhhhHHHHHHHHhcCcceE--Eeeec
Confidence 346778889999999998 588999999999999888776664444454556677889999999999999952 23345
Q ss_pred ChhhhhhhHHHHHHhHHhhccccc--CccccCcchHHHH-----HHhHHHHHHHHHHhhcCCC
Q psy14861 496 PPPVKRGLMLMSKILQNIANHVEF--SKEAHMIPFNDFL-----RAHFVIARQFFIQIASDCV 551 (1648)
Q Consensus 496 ~~~~rR~L~lIaKvLQnlAN~~~f--~KE~~m~~lN~fi-----~~~~~~~~~fl~~i~~~~~ 551 (1648)
++.+-..|..||.++...++.+.- +|+ .|-|..+ -..+..+.+|+.+|..-+.
T Consensus 439 s~~vDacLSVIAQtfmDaCS~se~~lgkd---SPsnKLLyAKdIp~Yk~~V~~YY~~I~~~p~ 498 (539)
T PF08337_consen 439 SPTVDACLSVIAQTFMDACSTSEHKLGKD---SPSNKLLYAKDIPRYKKMVERYYKDIRNMPP 498 (539)
T ss_dssp -HHHHHHHHHHHHHHHHHHSSS-----TT---S-HHHHHCTTTHHHHHHHHHHHHHHHHHS--
T ss_pred CcchhhHHHHHHHHHHHhhcccccccCCC---CcchhccccccHHHHHHHHHHHHHHHHhcCC
Confidence 889999999999999999887653 443 2444322 3456678899999987543
No 58
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=77.68 E-value=1.1e+02 Score=43.10 Aligned_cols=151 Identities=21% Similarity=0.231 Sum_probs=93.7
Q ss_pred hhHHhHHHHHHHHHhhccCCCcccCCCC-----------------CCC---------chhhhcccHHHHHHHHHHHhhcC
Q psy14861 115 EMSFRNKLVDYLMDWVLGSANQVTIPPT-----------------PGE---------SFVSISRDLDQACMDAVAALLKG 168 (1648)
Q Consensus 115 ~~~~rn~~~~~~~~W~~~~~~~~~~~~~-----------------~~~---------~~~~~~rdld~~~~~al~~ll~~ 168 (1648)
.+..|-.+..++-+|---+.++....+. ..+ +++.-.++|..+.+.|+|.|+.|
T Consensus 341 pfe~RkslF~l~~eWCGy~~~~~~~~~~s~~rre~~r~~~~~~~r~kd~~~~~~~~~~Ie~~~~~L~~aAl~AMAaLc~G 420 (1120)
T PF14228_consen 341 PFEARKSLFNLFEEWCGYSPSQWGQDGRSDYRREVERYKSSQLQREKDSRERATAEMEIEEQKRNLRTAALSAMAALCGG 420 (1120)
T ss_pred CHHHHHHHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4589999999999997433221111100 000 11112368999999999999976
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccccchhccccc------------------ccCCCcchhHHHH
Q psy14861 169 LPLQPEESDKGDLMEAKSSLFLKYFTLFMNLLNDCTDSQELDKEASRDR------------------SKNDSSSNLRSSI 230 (1648)
Q Consensus 169 lpL~p~~~~~~~~~~~ks~~F~~yF~~f~~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~~ 230 (1648)
=.+.... . .. =++.|+-.=.+++..++--..+.++...| .+...........
T Consensus 421 Pif~~~~-~--~~-------~grmlsWId~if~s~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 490 (1120)
T PF14228_consen 421 PIFDDNA-S--KP-------SGRMLSWIDSIFNSPSDRMPIGYSPLDPRTMSYSKHAGEGPRGATGRDKQKSSHARHSLG 490 (1120)
T ss_pred Cccccch-h--cc-------cchHHHHHHHHHcCCCCCCcCCCCCCCccCcccccccCcccccccchhhhccchHHHHHH
Confidence 4432111 0 11 16677777677776443222211111111 1111123345667
Q ss_pred HHHHHHHHhhhhchhhhhhhcccccCChhhhHHHHHHHHHhhhhcc
Q psy14861 231 IEAMSNLLSANIDSGLMHSIALGYRQDLQTRAAFMEVLTKILQQGT 276 (1648)
Q Consensus 231 i~alsnLl~aN~d~gl~~~l~~gy~~d~~~R~aFl~v~~~il~~g~ 276 (1648)
-.||.|||..|.| -+.+++..+|..++.+-.....|+++++.+..
T Consensus 491 r~AL~nLL~~N~d-Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~ 535 (1120)
T PF14228_consen 491 RRALKNLLEHNPD-LLDWVIDRCYSSSPRVAEGYFTVLAEVFSERE 535 (1120)
T ss_pred HHHHHHHHHhhHH-HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCC
Confidence 8999999999999 58999999999999997778899999996544
No 59
>KOG2023|consensus
Probab=39.99 E-value=1.2e+02 Score=39.82 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=49.4
Q ss_pred CCcccccccCchhHHHHHHHHHH----hchHHHHHHHHHhHHHHHhcCCCccccCCCCCCChhhHHHHHHHHHHHHHHHH
Q psy14861 996 DCMQTLFRGNSLGSKLMAFCFKI----YGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVF 1071 (1648)
Q Consensus 996 ~~~~~LfR~NS~~Tkll~~y~r~----~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l 1071 (1648)
++..-+.|+=++||- +.|.++ .+.+|++.+|.++++++++.. ..--...|..|-
T Consensus 444 ~DKkplVRsITCWTL--sRys~wv~~~~~~~~f~pvL~~ll~~llD~N--------------------K~VQEAAcsAfA 501 (885)
T KOG2023|consen 444 DDKKPLVRSITCWTL--SRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN--------------------KKVQEAACSAFA 501 (885)
T ss_pred ccCccceeeeeeeeH--hhhhhhHhcCChHhhhHHHHHHHHHHHhccc--------------------HHHHHHHHHHHH
Confidence 556778999999874 556553 356999999999999998741 111123455555
Q ss_pred HHHHhhcccCCHHHHHHHHHHHHH
Q psy14861 1072 DAIIDSADNFPPQLRSMCHCLYQV 1095 (1648)
Q Consensus 1072 ~~I~~S~~~~P~~lR~Ic~~i~~~ 1095 (1648)
.-..+.-+++=+-+-+|...+-.+
T Consensus 502 tleE~A~~eLVp~l~~IL~~l~~a 525 (885)
T KOG2023|consen 502 TLEEEAGEELVPYLEYILDQLVFA 525 (885)
T ss_pred HHHHhccchhHHHHHHHHHHHHHH
Confidence 555555555545555555555444
No 60
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=37.60 E-value=40 Score=35.76 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=28.2
Q ss_pred CccCCCCcEEEEEeccccccCCchHHHHHHHHHHh
Q psy14861 668 GKSRNGHPVFYYIARRYKTFETNADLLIYHVILTM 702 (1648)
Q Consensus 668 ~~s~~g~pV~~~i~rr~~~~~~d~e~LvY~il~tl 702 (1648)
|..++|+||+++.+++++....+.+.++-+++.++
T Consensus 14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVL 48 (158)
T ss_pred CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHH
Confidence 68999999999999999887788777666555343
No 61
>KOG2023|consensus
Probab=36.34 E-value=2.4e+02 Score=37.13 Aligned_cols=41 Identities=27% Similarity=0.311 Sum_probs=32.0
Q ss_pred CCcccccccCchhHHHHHHHHHH----hhHHHHHHHHHHhHHHHhcc
Q psy14861 354 DCMQTLFRGNSLGSKLMAFCFKI----YGASYLQNLLEPLISPLLDK 396 (1648)
Q Consensus 354 ~~~~tLfR~NS~~tkll~~y~r~----~G~~YL~~~L~p~i~~Ii~~ 396 (1648)
++-.-+.|+=++|| ++.|.++ .+.+|++.+|.+++++++++
T Consensus 444 ~DKkplVRsITCWT--LsRys~wv~~~~~~~~f~pvL~~ll~~llD~ 488 (885)
T KOG2023|consen 444 DDKKPLVRSITCWT--LSRYSKWVVQDSRDEYFKPVLEGLLRRLLDS 488 (885)
T ss_pred ccCccceeeeeeee--HhhhhhhHhcCChHhhhHHHHHHHHHHHhcc
Confidence 44566888888887 4566654 45799999999999999875
No 62
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=29.02 E-value=66 Score=33.50 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=27.6
Q ss_pred cceeccCccCCCCcEEEEEeccccc-cCCchHHHHHHHH
Q psy14861 662 NIFYQAGKSRNGHPVFYYIARRYKT-FETNADLLIYHVI 699 (1648)
Q Consensus 662 ~~f~~~~~s~~g~pV~~~i~rr~~~-~~~d~e~LvY~il 699 (1648)
.++|.+|..++|+||+++..++.+. ...+.+.++.+++
T Consensus 9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~ 47 (157)
T cd00170 9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLV 47 (157)
T ss_pred cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHH
Confidence 4788888999999999999996443 3445455555555
No 63
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=25.23 E-value=82 Score=24.38 Aligned_cols=29 Identities=34% Similarity=0.417 Sum_probs=22.5
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHHHh
Q psy14861 1570 LLNMALLNLGSVDPNLRTAAYNLLCALTA 1598 (1648)
Q Consensus 1570 LLn~allnL~s~d~~lR~aaYNLL~al~~ 1598 (1648)
|+...+=++.++++.+|.+|-.-|+++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 34555667789999999999999998875
No 64
>PF03455 dDENN: dDENN domain; InterPro: IPR005112 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form a globular domain that is completely alpha helical []. Although not statistically supported it has been suggested that this domain may be similar to members of the Rho/Rac/Cdc42 GEF family [].; PDB: 3TW8_A.
Probab=24.01 E-value=66 Score=29.69 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.6
Q ss_pred ChhhhHHHHHHHHHhhhhccccc
Q psy14861 257 DLQTRAAFMEVLTKILQQGTEFN 279 (1648)
Q Consensus 257 d~~~R~aFl~v~~~il~~g~~~~ 279 (1648)
|..+|.||++.++.+++.+..|-
T Consensus 2 d~~Ir~~Fl~~f~~ll~~Yr~~~ 24 (68)
T PF03455_consen 2 DDQIREAFLRFFVSLLGNYREYL 24 (68)
T ss_dssp -THHHHHHHHHHHHHHGGGGGG-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999988763
No 65
>KOG1463|consensus
Probab=22.97 E-value=1.3e+03 Score=28.64 Aligned_cols=177 Identities=16% Similarity=0.161 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHhhcc----CCcHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHhchHHHHHHHHHhHHHHHh
Q psy14861 962 QMDELARVFVTLFDA----KHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLD 1037 (1648)
Q Consensus 962 ~~d~la~~Ll~lF~~----~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~Tkll~~y~r~~G~~YL~~~L~p~i~~ii~ 1037 (1648)
..-.+.+.|+..|.. -+.-..++..+|+ -+.+..--|-+.++-.|++..|+...-..=-...++++++++=.
T Consensus 85 kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIe----WA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKK 160 (411)
T KOG1463|consen 85 KAAKLVRSLVDMFLKIDDGTGDQIELCTECIE----WAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKK 160 (411)
T ss_pred HHHHHHHHHHHHHccCCCCcchHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 344556677777765 3444555555544 44455555666899999999998765445555677888888744
Q ss_pred cCCCccccCCCCCCChhhHHHHHHHHHHHHHH-HHHHHHhhcccCCHHHHHHHHHHHHHHHhhCCCCCCccchhHHHHHH
Q psy14861 1038 KAHVAFEVDPARLDPSENIENNRRELISWTKK-VFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAVGTVIF 1116 (1648)
Q Consensus 1038 ~~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~-~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~kFP~~~e~~~~aVg~fiF 1116 (1648)
-++...=|+-.-.+ ...-.++.||-+.=.. .--+-....-.|||.+..-.--..-.+.. + |-.+..-.+.+|
T Consensus 161 lDDK~lLvev~llE--SK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha---~--ekDykTafSYFy 233 (411)
T KOG1463|consen 161 LDDKILLVEVHLLE--SKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHA---A--EKDYKTAFSYFY 233 (411)
T ss_pred cccccceeeehhhh--hHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceee---c--ccccchHHHHHH
Confidence 32222222211111 1223455555332222 22234455668999875433221111111 1 222433344444
Q ss_pred hHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhc
Q psy14861 1117 LRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIAN 1157 (1648)
Q Consensus 1117 LRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN 1157 (1648)
--| |.|..++.++..-+.=.-++++|++-|...
T Consensus 234 EAf--------Egf~s~~~~v~A~~sLKYMlLcKIMln~~d 266 (411)
T KOG1463|consen 234 EAF--------EGFDSLDDDVKALTSLKYMLLCKIMLNLPD 266 (411)
T ss_pred HHH--------ccccccCCcHHHHHHHHHHHHHHHHhcCHH
Confidence 444 556666554444445556899999987764
Done!