Query psy14861
Match_columns 1648
No_of_seqs 614 out of 1412
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 22:42:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3peg_A Neurofibromin; SEC14 do 100.0 7.6E-63 2.6E-67 571.4 20.5 275 1276-1553 2-290 (290)
2 1nf1_A NF1-333, protein (neuro 100.0 3.7E-63 1.3E-67 590.4 14.8 330 925-1257 1-333 (333)
3 1nf1_A NF1-333, protein (neuro 100.0 1.5E-62 5.3E-67 585.1 12.8 330 283-615 1-333 (333)
4 3pg7_A Neurofibromin; SEC lipi 100.0 3.6E-60 1.2E-64 542.6 21.3 255 1295-1553 2-256 (256)
5 1wer_A P120GAP; GTPase activat 100.0 5.7E-53 2E-57 502.9 30.2 317 929-1257 7-325 (334)
6 1wer_A P120GAP; GTPase activat 100.0 7E-53 2.4E-57 502.2 29.9 318 287-615 7-325 (334)
7 3fay_A P195, RAS GTPase-activa 100.0 4E-51 1.4E-55 495.1 25.8 311 929-1257 11-378 (387)
8 3fay_A P195, RAS GTPase-activa 100.0 3.7E-51 1.3E-55 495.5 24.7 312 287-616 11-379 (387)
9 3bxj_A RAS GTPase-activating p 100.0 8E-47 2.7E-51 471.6 28.7 298 929-1256 163-464 (483)
10 3bxj_A RAS GTPase-activating p 100.0 2.7E-46 9.3E-51 466.8 26.9 299 287-615 163-465 (483)
11 3peg_A Neurofibromin; SEC14 do 99.1 4.9E-11 1.7E-15 138.4 4.2 68 635-702 3-70 (290)
12 3hx3_A Retinaldehyde-binding p 98.8 3.8E-09 1.3E-13 125.0 8.2 139 1304-1444 143-292 (316)
13 1r5l_A Alpha-TTP, protein (alp 98.8 4.3E-09 1.5E-13 121.0 7.9 136 1305-1443 85-232 (262)
14 1aua_A Phosphatidylinositol tr 98.6 1.8E-08 6.2E-13 118.1 6.7 130 1307-1438 107-257 (296)
15 1olm_A SEC14-like protein 2; l 98.6 4.2E-08 1.4E-12 120.0 7.4 128 1309-1438 89-237 (403)
16 3q8g_A CRAL-TRIO domain-contai 98.5 5.5E-08 1.9E-12 115.2 5.2 131 1306-1438 121-272 (320)
17 3pg7_A Neurofibromin; SEC lipi 98.2 6.6E-07 2.3E-11 102.4 3.4 50 653-702 2-51 (256)
18 3hm6_X Plexin-B1; structural g 93.0 0.61 2.1E-05 58.1 13.2 165 1061-1230 436-617 (644)
19 3ig3_A Plxna3 protein; plexin 89.9 1.6 5.4E-05 54.5 12.3 165 1061-1230 419-603 (627)
20 3hm6_X Plexin-B1; structural g 89.1 2.4 8.3E-05 52.9 13.2 131 419-554 436-573 (644)
21 3ig3_A Plxna3 protein; plexin 83.7 5.9 0.0002 49.4 12.5 133 417-554 417-559 (627)
No 1
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=100.00 E-value=7.6e-63 Score=571.37 Aligned_cols=275 Identities=63% Similarity=1.105 Sum_probs=234.9
Q ss_pred CCCchhHHHHHHHHhhhcchhhhhccccCeEEecCCCCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHhcccccCCeEEE
Q psy14861 1276 DMSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTMKPFCHAPYELV 1355 (1648)
Q Consensus 1276 ~~~~~~~~eFM~R~~~~~~ed~~~i~~~~ify~~g~skdG~PV~v~i~r~~~~~~~D~e~LiY~vl~tl~~~~~~~f~lV 1355 (1648)
.|++++|||||+||++++.|++++|++.++|||+|+|+||+||||+++||++.+.+|+|+|+||+++|++++|+++|++|
T Consensus 2 ~~~~~~~~efM~r~~~~~~e~~~~i~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~~~~y~lV 81 (290)
T 3peg_A 2 AMGSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIV 81 (290)
T ss_dssp ----------------------CCGGGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTTTSCEEEE
T ss_pred CCchHHHHHHHHHhhccChhhhhhhhcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhcCCCeEEE
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCcccHHHHHHHHHHhhHHHHhcccEEEEEcCChHHHHHHHHhhccccccccCCceEEEcCChhhhhhcCCC
Q psy14861 1356 IDFTHASSENRFKTEFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFLDSPSKLNDYIDH 1435 (1648)
Q Consensus 1356 ~D~T~f~~~n~p~~~~l~~~~~llP~~~~kNl~~iYi~Npn~~~r~~~k~~~~~~s~~~k~~~ki~fi~sl~eL~~~i~~ 1435 (1648)
||||+|+.+|+|+.+|+++|++++|+++++||+++||||||+|+|.|+|++.+.+.+. ++++|++|++++.+|..++++
T Consensus 82 ~D~T~~~~~n~p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~-k~~~k~v~~~~~~~L~~~i~~ 160 (290)
T 3peg_A 82 VDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGL-KGSKRLVFIDCPGKLAEHIEH 160 (290)
T ss_dssp EECTTCCGGGCCCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGG-TTCTTEEEESSSCC-------
T ss_pred EEcCCCCccCCChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhh-hcCceEEEcCCHHHHHhhCCH
Confidence 9999999999999999999999999999999999999999999999998876666665 889999999999999888877
Q ss_pred CCc--------------ccCccccccccccccccccceeeccccceEEEEcCeEEEEeeceeeeccccceeeeeEEEccc
Q psy14861 1436 NQQ--------------KLPGATLALDEDLKVFNNGLKLSHKDTKVAIKVGPTAVQITSLEKTKVLSHSVLLNDIYYAHE 1501 (1648)
Q Consensus 1436 ~~l--------------~LP~~tl~l~~d~~v~~~~~~l~~~~~pV~lkIG~~~~qi~~~~~~~~~~~~~~~ndV~~~sd 1501 (1648)
+++ +||++|+++.+|+|||.|++++|++.+||+||||++|+||++++|++++|+++++||||++||
T Consensus 161 ~~~~lp~~~~~~~~~~l~L~~~tl~v~~D~rvf~~~~~l~~~~~~V~lkIG~~~lQi~~~~k~~i~~~~~~~nDVy~lsd 240 (290)
T 3peg_A 161 EQQKLPAATLALGHEQQKLPAATLALEEDLKVFHNALKLAHKDTKVSIKVGSTAVQVTSAERTKVLGQSVFLNDIYYASE 240 (290)
T ss_dssp ----------------CCCCCHHHHTTSCCEEEEEEEECSSSCEEEEEEECSSEEEEEESSCEEETTEEECCEEEEETTT
T ss_pred HHhcCccccchhhhhccCCChhhceeeecceEeecceeecccCCCEEEEECCCEEEEEEeccEEccccCceeEEEEEeee
Confidence 644 559999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccccCCceEEEEecCCcceEEEEecccHHHHHHHHHHHHHhhcccCCC
Q psy14861 1502 IEEVCLVDDNQFTLSFVKDSQTQVLSFIHNECDSIVQAIIHIRNRWELSQSD 1553 (1648)
Q Consensus 1502 i~~v~~~~~~eF~l~~~~~~~~~~l~f~S~~~~eIvk~i~~~~~r~~~~~~~ 1553 (1648)
|++|+++++|||||++.|+++ +|+|+||+|+||||+|++|++||+.|||+
T Consensus 241 I~ev~~~~~~eFti~~~n~~~--~l~f~S~~~~eIv~~i~~a~~R~~~~~~~ 290 (290)
T 3peg_A 241 IEEICLVDENQFTLTIANQGT--PLTFMHQECEAIVQSIIHIRTRWELSQPD 290 (290)
T ss_dssp EEEEEEEETTEEEEEETTCSS--CEEEECTTHHHHHHHHHHHHHHHHHTSCC
T ss_pred eeEEEecCCCceEEEEeCCcE--EEEEeCcCHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999988887 89999999999999999999999999985
No 2
>1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS, GAP, signal transduction, cancer, growth regulation, GTP hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2
Probab=100.00 E-value=3.7e-63 Score=590.42 Aligned_cols=330 Identities=70% Similarity=1.151 Sum_probs=254.2
Q ss_pred hhHhhhhHHHHHHHHHhhhcCCchHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCccccccc
Q psy14861 925 ETVLADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRG 1004 (1648)
Q Consensus 925 ~~~~~~~ye~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~ 1004 (1648)
||++.++|++|++||++++++|+++++.++|++||++++|+++.+++++|++++++.+|++.+++.||+.+++++++|||
T Consensus 1 ~~~~~~~y~~L~~Ll~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~l~~lf~~~~~l~~ll~~l~~~Ei~~~~~~~~lfR~ 80 (333)
T 1nf1_A 1 ETVLADRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRG 80 (333)
T ss_dssp --------CTHHHHHHHHHTCTTSTTHHHHHTTSCGGGHHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSSSSSTTSTTCS
T ss_pred CccHHHHHHHHHHHHHccccCCcHHHHHHHHHhCCHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCHhHHHhc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhchHHHHHHHHHhHHHHHhcC---CCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccC
Q psy14861 1005 NSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKA---HVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNF 1081 (1648)
Q Consensus 1005 NS~~Tkll~~y~r~~G~~YL~~~L~p~i~~ii~~~---~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~ 1081 (1648)
||+|||+++.|+|..|++||+++|+|+|+++++++ +++||+||.|+++++.+++|+++|+.++++||++|++|++.|
T Consensus 81 Ns~~tkll~~y~k~~g~~yL~~~L~p~i~~i~~~~~~~~~~~EvDP~ki~~~~~~~~n~~~L~~~~~~~~~~I~~s~~~~ 160 (333)
T 1nf1_A 81 NSLASKIMTFCFKVYGATYLQKLLDPLLRIVITSSDWQHVSFEVDPTRLEPSESLEENQRNLLQMTEKFFHAIISSSSEF 160 (333)
T ss_dssp CCTTHHHHHHHHHHHHTTHHHHSSSCC--------------------------CTTTTTTSTTTTHHHHHHHHHHTTTTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCcccChhhcCCchhHHHHHHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999999999999999999998853 589999999999888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCC
Q psy14861 1082 PPQLRSMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF 1161 (1648)
Q Consensus 1082 P~~lR~Ic~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F 1161 (1648)
|+++|+||+++++.+.+|||+ ..+.+||||+|||||||||++|+.||+++..|++.+||+|++|||+||++||++.|
T Consensus 161 P~~lR~i~~~l~~~~~~kfp~---~~~~~v~~fiflRfi~PAIvsP~~fgl~~~~~~~~~~r~L~liaKvLQ~lan~~~f 237 (333)
T 1nf1_A 161 PPQLRSVCHCLYQVVSQRFPQ---NSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPIIERGLKLMSKILQSIANHVLF 237 (333)
T ss_dssp CTTHHHHHHHHHHHHTTTCCS---SCHHHHHHHHHHHTHHHHHHCTTCC--------CHHHHHHHTHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHHHHCCC---chHHHHHHHHHHHHHhhhhCCHHHhCCcCCCCCHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999995 45789999999999999999999999999999999999999999999999999999
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCcccccchhhHHHHHHHHHHHHHHHhhhhccCccccccCCCc
Q psy14861 1162 SKEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRP 1241 (1648)
Q Consensus 1162 ~KE~~m~~lN~fi~~~~~~~~~fl~~is~~~~~~~~~~~~~~~i~~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~~~~~~ 1241 (1648)
+||+||.|||+|+.++.+++++|+.+++++++..+...+|..+++++|+..+|++|++|+++|++++++.++|+++++++
T Consensus 238 ~ke~~m~~lN~fi~~~~~~~~~f~~~i~~~~~~~d~~~~~~~~i~~~ei~~lH~ll~~~~~~i~~~l~s~~~~~~~~~~~ 317 (333)
T 1nf1_A 238 TKEEHMRPFNDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFISDGNVLALHRLLWNNQEKIGQYLSSNRDHKAVGRRP 317 (333)
T ss_dssp CSSTTSGGGHHHHHHTHHHHHHHHHHTTC---------------------CC-CHHHHHTTHHHHSTTC---------CH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCc
Confidence 99999999999999999999999999988777666667888899999999999999999999999999999998899999
Q ss_pred cchHHHHHhhcCCCCC
Q psy14861 1242 FDKMATLLAYLGPPEH 1257 (1648)
Q Consensus 1242 ~D~L~~lL~~LG~P~~ 1257 (1648)
+|+|+++|++||||+|
T Consensus 318 ~d~l~~lL~~lG~p~~ 333 (333)
T 1nf1_A 318 FDKMATLLAYLGPPEH 333 (333)
T ss_dssp HHHHHHHHHTCCCCC-
T ss_pred chHHHHHHHHhCCCCC
Confidence 9999999999999985
No 3
>1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS, GAP, signal transduction, cancer, growth regulation, GTP hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2
Probab=100.00 E-value=1.5e-62 Score=585.09 Aligned_cols=330 Identities=70% Similarity=1.148 Sum_probs=254.0
Q ss_pred hhHHHHHHHHHHHHHHhhccCCchHHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccCCccccccc
Q psy14861 283 ETVLADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRG 362 (1648)
Q Consensus 283 ~~~~~~~ye~l~~Ll~~~~~~~~l~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~~~~tLfR~ 362 (1648)
|++..++|++|++||+++++.|+++++.++|++||..++|+++++++++|++++.+.++++.+++.||+.+++++++|||
T Consensus 1 ~~~~~~~y~~L~~Ll~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~l~~lf~~~~~l~~ll~~l~~~Ei~~~~~~~~lfR~ 80 (333)
T 1nf1_A 1 ETVLADRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRG 80 (333)
T ss_dssp --------CTHHHHHHHHHTCTTSTTHHHHHTTSCGGGHHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSSSSSTTSTTCS
T ss_pred CccHHHHHHHHHHHHHccccCCcHHHHHHHHHhCCHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCHhHHHhc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHHHhHHHHhccC---CCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccC
Q psy14861 363 NSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKA---HVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNF 439 (1648)
Q Consensus 363 NS~~tkll~~y~r~~G~~YL~~~L~p~i~~Ii~~~---~~~~EiDP~ki~~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~ 439 (1648)
||+|||+++.|+|..|++||+++|+|+|+++++++ +++||+||.|+++++.+++|.++|+.++++|+++|++|++.|
T Consensus 81 Ns~~tkll~~y~k~~g~~yL~~~L~p~i~~i~~~~~~~~~~~EvDP~ki~~~~~~~~n~~~L~~~~~~~~~~I~~s~~~~ 160 (333)
T 1nf1_A 81 NSLASKIMTFCFKVYGATYLQKLLDPLLRIVITSSDWQHVSFEVDPTRLEPSESLEENQRNLLQMTEKFFHAIISSSSEF 160 (333)
T ss_dssp CCTTHHHHHHHHHHHHTTHHHHSSSCC--------------------------CTTTTTTSTTTTHHHHHHHHHHTTTTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCcccChhhcCCchhHHHHHHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999999999999999999998864 489999999999888899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhccccc
Q psy14861 440 PPQLRSMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF 519 (1648)
Q Consensus 440 P~~lR~Ic~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f 519 (1648)
|+++|+||+++++.+.+|||+. .+.+||+|+|+|||||||++|+.||+++..|++.+||+|++|||+||++||++.|
T Consensus 161 P~~lR~i~~~l~~~~~~kfp~~---~~~~v~~fiflRfi~PAIvsP~~fgl~~~~~~~~~~r~L~liaKvLQ~lan~~~f 237 (333)
T 1nf1_A 161 PPQLRSVCHCLYQVVSQRFPQN---SIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPIIERGLKLMSKILQSIANHVLF 237 (333)
T ss_dssp CTTHHHHHHHHHHHHTTTCCSS---CHHHHHHHHHHHTHHHHHHCTTCC--------CHHHHHHHTHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHHHhhhhCCHHHhCCcCCCCCHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999985 4789999999999999999999999999889999999999999999999999999
Q ss_pred CccccCcchHHHHHHhHHHHHHHHHHhhcCCCCcCCCCCCCcccChHHHHHHHHHHHHHHHHHhhhhccCccccccCCCC
Q psy14861 520 SKEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRP 599 (1648)
Q Consensus 520 ~KE~~m~~lN~fi~~~~~~~~~fl~~i~~~~~~e~~~~~~~~~is~~ei~~LHr~L~~~~~~I~~~L~~~~~~~~~~~~~ 599 (1648)
+||+||.|||+|+.++.+++++||.+++++++..+...+|.+||+++|+..+|++|++|+++|++++++.++++++|+++
T Consensus 238 ~ke~~m~~lN~fi~~~~~~~~~f~~~i~~~~~~~d~~~~~~~~i~~~ei~~lH~ll~~~~~~i~~~l~s~~~~~~~~~~~ 317 (333)
T 1nf1_A 238 TKEEHMRPFNDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFISDGNVLALHRLLWNNQEKIGQYLSSNRDHKAVGRRP 317 (333)
T ss_dssp CSSTTSGGGHHHHHHTHHHHHHHHHHTTC---------------------CC-CHHHHHTTHHHHSTTC---------CH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCc
Confidence 99999999999999999999999999988776666556788999999999999999999999999999999988899999
Q ss_pred cchHHHHHhhcCCCCC
Q psy14861 600 FDKMATLLAYLGPPEH 615 (1648)
Q Consensus 600 fD~l~~lL~~LG~P~~ 615 (1648)
||+|+++|++||+|++
T Consensus 318 ~d~l~~lL~~lG~p~~ 333 (333)
T 1nf1_A 318 FDKMATLLAYLGPPEH 333 (333)
T ss_dssp HHHHHHHHHTCCCCC-
T ss_pred chHHHHHHHHhCCCCC
Confidence 9999999999999985
No 4
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=100.00 E-value=3.6e-60 Score=542.56 Aligned_cols=255 Identities=65% Similarity=1.134 Sum_probs=247.0
Q ss_pred hhhhhccccCeEEecCCCCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHhcccccCCeEEEEEcCCCCCCCcccHHHHHH
Q psy14861 1295 EEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTMKPFCHAPYELVIDFTHASSENRFKTEFLQK 1374 (1648)
Q Consensus 1295 ed~~~i~~~~ify~~g~skdG~PV~v~i~r~~~~~~~D~e~LiY~vl~tl~~~~~~~f~lV~D~T~f~~~n~p~~~~l~~ 1374 (1648)
|||++|++.++||++|+|+||+||||+++|+++++++|+|.|+||+++|++++|+++|++|||||+|+.+|+|+.+|+++
T Consensus 2 ed~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~~~~y~lV~d~T~~~~~n~p~~~wl~~ 81 (256)
T 3pg7_A 2 EEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSK 81 (256)
T ss_dssp TTTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTTTSCEEEEEECTTCCGGGCCCHHHHHH
T ss_pred cchhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCCCCcccCCcHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHhcccEEEEEcCChHHHHHHHHhhccccccccCCceEEEcCChhhhhhcCCCCCcccCccccccccccccc
Q psy14861 1375 WFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFLDSPSKLNDYIDHNQQKLPGATLALDEDLKVF 1454 (1648)
Q Consensus 1375 ~~~llP~~~~kNl~~iYi~Npn~~~r~~~k~~~~~~s~~~k~~~ki~fi~sl~eL~~~i~~~~l~LP~~tl~l~~d~~v~ 1454 (1648)
|++++|++++|||+++||||||+|+|.+++++.+.+.+. ++++|++|++|++||.++|++++|+||++|+++++|+|||
T Consensus 82 ~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~-k~~~Ki~fv~sl~eL~~~i~~~~L~LP~~t~~~~~d~rvf 160 (256)
T 3pg7_A 82 WFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGL-KGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLKVF 160 (256)
T ss_dssp TTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTT-TTCTTEEEESSTTGGGGTSCGGGCCCCHHHHHTTSSCEEE
T ss_pred HHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhcccccc-ccCCcEEEECCHHHHHhhcCHHHcCCChHHHhhcccceee
Confidence 999999999999999999999999999999887766664 8899999999999999999999999999999999999999
Q ss_pred cccceeeccccceEEEEcCeEEEEeeceeeeccccceeeeeEEEcccceeeccccCCceEEEEecCCcceEEEEecccHH
Q psy14861 1455 NNGLKLSHKDTKVAIKVGPTAVQITSLEKTKVLSHSVLLNDIYYAHEIEEVCLVDDNQFTLSFVKDSQTQVLSFIHNECD 1534 (1648)
Q Consensus 1455 ~~~~~l~~~~~pV~lkIG~~~~qi~~~~~~~~~~~~~~~ndV~~~sdi~~v~~~~~~eF~l~~~~~~~~~~l~f~S~~~~ 1534 (1648)
+++++++++++||+||||++|+||++++|+ ++|+++++||||+||||++|++.++|||||++.||++ +|+|+||+|+
T Consensus 161 ~~v~~l~~~~~pV~lkIG~~~~qi~~~~~~-i~~~~~~~ndVy~ls~i~~v~t~~~~eFtl~~~n~~~--~l~f~S~~~~ 237 (256)
T 3pg7_A 161 HNALKLAHKDTKVSIKVGSTAVQVTSAERT-VLGQSVFLNDIYYASEIEEICLVDENQFTLTIANQGT--PLTFMHQECE 237 (256)
T ss_dssp EEEEEESSSCEEEEEEECSSEEEEEESCEE-ETTEEECCEEEEEGGGEEEEEEEETTEEEEEETTCCS--CEEEECTTHH
T ss_pred ccceeeccCCCcEEEEECCCEEEEEEEEeE-ecCCcceeEEEEEeeeeEEEecCCCCCeEEEEeCCcE--EEEEeCcCHH
Confidence 999999999999999999999999999999 9999999999999999999998899999999988887 8999999999
Q ss_pred HHHHHHHHHHHhhcccCCC
Q psy14861 1535 SIVQAIIHIRNRWELSQSD 1553 (1648)
Q Consensus 1535 eIvk~i~~~~~r~~~~~~~ 1553 (1648)
||||+|++|++||+.|||+
T Consensus 238 eIv~~i~~a~~R~~~~~~~ 256 (256)
T 3pg7_A 238 AIVQSIIHIRTRWELSQPD 256 (256)
T ss_dssp HHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999985
No 5
>1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2 PDB: 1wq1_G*
Probab=100.00 E-value=5.7e-53 Score=502.95 Aligned_cols=317 Identities=25% Similarity=0.427 Sum_probs=285.5
Q ss_pred hhhHHHHHHHHHhhhcCCchHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCchh
Q psy14861 929 ADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLG 1008 (1648)
Q Consensus 929 ~~~ye~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~ 1008 (1648)
.+.|++|.++|. .+++.++.+++++|+ .+.++++.+++++|+++++...+++.|++.||+++++++++|||||+|
T Consensus 7 ~~~Y~~L~~lL~----~~~~~l~~~l~~~~~-~~~~~la~~l~~lf~~~~~~~~lL~~Li~~Ei~~~~~~~~lfR~Ns~~ 81 (334)
T 1wer_A 7 EEEYSEFKELIL----QKELHVVYALSHVCG-QDRTLLASILLRIFLHEKLESLLLCTLNDREISMEDEATTLFRATTLA 81 (334)
T ss_dssp GGGGHHHHHHHT----CTTCHHHHHHHHHCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCGGGTTCSCCHH
T ss_pred HHHHHHHHHHHc----CCcHHHHHHHHHHhh-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhhhcCCCHH
Confidence 467999999996 466789999999997 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHH
Q psy14861 1009 SKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSM 1088 (1648)
Q Consensus 1009 Tkll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~I 1088 (1648)
||+++.|+|..|++||+++|+|+|++|+++ +.+||+||.|++.++++++|+++|+.+++.||++|++|++.||+++|+|
T Consensus 82 tkll~~y~r~~g~~yL~~~L~~~i~~i~~~-~~~~EiDP~ki~~~~~~~~n~~~L~~~~~~~~~~I~~s~~~~P~~lR~i 160 (334)
T 1wer_A 82 STLMEQYMKATATQFVHHALKDSILKIMES-KQSCELSPSKLEKNEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYI 160 (334)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHC-CCCCCCCGGGTCSSCCHHHHHHHHHHHHHHHHHHHHTTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCeeeCHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999997 4599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCC-CCcccc
Q psy14861 1089 CHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF-SKEAHM 1167 (1648)
Q Consensus 1089 c~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F-~KE~~m 1167 (1648)
|+++++.+.+|||++++..+.+||||+|||||||||++|+.||+++..|++++||+|++|||+||++||++.| +||+||
T Consensus 161 ~~~l~~~~~~kfp~~~~~~~~~V~~fiFlRfi~PAIvsP~~fgl~~~~p~~~~rr~L~lIaKvLQ~lan~~~f~~ke~~m 240 (334)
T 1wer_A 161 YGCLQKSVQHKWPTNTTMRTRVVSGFVFLRLICPAILNPRMFNIISDSPSPIAARTLILVAKSVQNLANLVEFGAKEPYM 240 (334)
T ss_dssp HHHHHHHHHHHSTTCSSHHHHHHHHHHTTTTHHHHHHCGGGGTSCSSCCCHHHHHHHHHHHHHHHHHHTTCCCCTTSGGG
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHhHHhCChHhcCCCCCCCCHHHHHHHHHHHHHHHHHHccccCCCccHHH
Confidence 9999999999999876656789999999999999999999999999999999999999999999999999999 599999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCcccccchhhHHHHHHHHHHHHHHHhhhhccCccccccC-CCccchHH
Q psy14861 1168 IPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVG-RRPFDKMA 1246 (1648)
Q Consensus 1168 ~~lN~fi~~~~~~~~~fl~~is~~~~~~~~~~~~~~~i~~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~~~-~~~~D~L~ 1246 (1648)
.|+|+|+.++.+++++|+.+++++++.++..... ..+..+|+..+|+++++|+++|++. +.. ..+ ..++|+|.
T Consensus 241 ~~lN~fi~~~~~~~~~fl~~i~~v~~~~~~~~~~-~~~~~~ei~~lH~ll~~~~~~i~~~-s~~----~~~~~~~~~~l~ 314 (334)
T 1wer_A 241 EGVNPFIKSNKHRMIMFLDELGNVPELPDTTEHS-RTDLSRDLAALHEICVAHSDELRTL-SNE----RGAQQHVLKKLL 314 (334)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTCCCSCCCCCCCC-CCCCHHHHHHHHHHHHHTHHHHHHH-HTS----CSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc-CCCchHHHHHHHHHHHHHHHHHHhh-hhc----ccccccchhhHH
Confidence 9999999999999999999999877766533222 2245689999999999999999863 111 111 13578999
Q ss_pred HHHhhcCCCCC
Q psy14861 1247 TLLAYLGPPEH 1257 (1648)
Q Consensus 1247 ~lL~~LG~P~~ 1257 (1648)
.++..|+.++.
T Consensus 315 ~~~~~~~~~~~ 325 (334)
T 1wer_A 315 AITELLQQKQN 325 (334)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhHH
Confidence 99998887763
No 6
>1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2 PDB: 1wq1_G*
Probab=100.00 E-value=7e-53 Score=502.22 Aligned_cols=318 Identities=25% Similarity=0.436 Sum_probs=286.7
Q ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccCCcccccccCchh
Q psy14861 287 ADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLG 366 (1648)
Q Consensus 287 ~~~ye~l~~Ll~~~~~~~~l~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~~~~tLfR~NS~~ 366 (1648)
.++|++|+++|+ .+++.++.+|+++|+ .+.++++.+++++|+++|++.++|+.|++.||+++++++++|||||+|
T Consensus 7 ~~~Y~~L~~lL~----~~~~~l~~~l~~~~~-~~~~~la~~l~~lf~~~~~~~~lL~~Li~~Ei~~~~~~~~lfR~Ns~~ 81 (334)
T 1wer_A 7 EEEYSEFKELIL----QKELHVVYALSHVCG-QDRTLLASILLRIFLHEKLESLLLCTLNDREISMEDEATTLFRATTLA 81 (334)
T ss_dssp GGGGHHHHHHHT----CTTCHHHHHHHHHCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCGGGTTCSCCHH
T ss_pred HHHHHHHHHHHc----CCcHHHHHHHHHHhh-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhhhcCCCHH
Confidence 467999999887 466788999999997 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHH
Q psy14861 367 SKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSM 446 (1648)
Q Consensus 367 tkll~~y~r~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~I 446 (1648)
||+++.|+|..|+.||+++|+|+|++|+++++ +||+||.|++.++++++|+++|+.++++|+++|++|++.||+++|+|
T Consensus 82 tkll~~y~r~~g~~yL~~~L~~~i~~i~~~~~-~~EiDP~ki~~~~~~~~n~~~L~~~~~~~~~~I~~s~~~~P~~lR~i 160 (334)
T 1wer_A 82 STLMEQYMKATATQFVHHALKDSILKIMESKQ-SCELSPSKLEKNEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYI 160 (334)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC-CCCCCGGGTCSSCCHHHHHHHHHHHHHHHHHHHHTTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CeeeCHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999998765 99999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccccC-ccccC
Q psy14861 447 CHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEAHM 525 (1648)
Q Consensus 447 c~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m 525 (1648)
|+++++.+.++||++++..+.+||+|+|+|||||||++|+.||+++..|++.+||+|++|||+||++||++.|+ ||+||
T Consensus 161 ~~~l~~~~~~kfp~~~~~~~~~V~~fiFlRfi~PAIvsP~~fgl~~~~p~~~~rr~L~lIaKvLQ~lan~~~f~~ke~~m 240 (334)
T 1wer_A 161 YGCLQKSVQHKWPTNTTMRTRVVSGFVFLRLICPAILNPRMFNIISDSPSPIAARTLILVAKSVQNLANLVEFGAKEPYM 240 (334)
T ss_dssp HHHHHHHHHHHSTTCSSHHHHHHHHHHTTTTHHHHHHCGGGGTSCSSCCCHHHHHHHHHHHHHHHHHHTTCCCCTTSGGG
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHhHHhCChHhcCCCCCCCCHHHHHHHHHHHHHHHHHHccccCCCccHHH
Confidence 99999999999999766667899999999999999999999999998999999999999999999999999995 99999
Q ss_pred cchHHHHHHhHHHHHHHHHHhhcCCCCcCCCCCCCcccChHHHHHHHHHHHHHHHHHhhhhccCccccccCCCCcchHHH
Q psy14861 526 IPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMAT 605 (1648)
Q Consensus 526 ~~lN~fi~~~~~~~~~fl~~i~~~~~~e~~~~~~~~~is~~ei~~LHr~L~~~~~~I~~~L~~~~~~~~~~~~~fD~l~~ 605 (1648)
.|+|+|+.++.+++++|+.+++++++.++....+ .-+...|+..+|+++++|+++|++. +..++ ....++|+|-.
T Consensus 241 ~~lN~fi~~~~~~~~~fl~~i~~v~~~~~~~~~~-~~~~~~ei~~lH~ll~~~~~~i~~~-s~~~~---~~~~~~~~l~~ 315 (334)
T 1wer_A 241 EGVNPFIKSNKHRMIMFLDELGNVPELPDTTEHS-RTDLSRDLAALHEICVAHSDELRTL-SNERG---AQQHVLKKLLA 315 (334)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTCCCSCCCCCCCC-CCCCHHHHHHHHHHHHHTHHHHHHH-HTSCS---THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc-CCCchHHHHHHHHHHHHHHHHHHhh-hhccc---ccccchhhHHH
Confidence 9999999999999999999999887776543222 1245679999999999999999863 22211 11246789999
Q ss_pred HHhhcCCCCC
Q psy14861 606 LLAYLGPPEH 615 (1648)
Q Consensus 606 lL~~LG~P~~ 615 (1648)
++..|+.++.
T Consensus 316 ~~~~~~~~~~ 325 (334)
T 1wer_A 316 ITELLQQKQN 325 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhHH
Confidence 9999987764
No 7
>3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha, calmodulin-binding, cell membrane, membrane, phosphoprotein, membrane protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4e-51 Score=495.09 Aligned_cols=311 Identities=23% Similarity=0.404 Sum_probs=272.4
Q ss_pred hhhHHHHHHHHHhhhcCCchHHHHHHHhhcCchhHH-HHHHHHHHhhccC------CcHHHHHHHHHHHHhhc-CCCccc
Q psy14861 929 ADRFEELVKLVTLISDKGELSIAMALANVVSTSQMD-ELARVFVTLFDAK------HMLPPLLWNMFYREVEV-SDCMQT 1000 (1648)
Q Consensus 929 ~~~ye~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d-~la~~Ll~lF~~~------~~l~~Ll~~li~~EI~~-t~~~~~ 1000 (1648)
-+.|++|+.+|. .+|. ..+.|+..++....+ .+..+++++|++. +++++|++.+++.||+. ++++++
T Consensus 11 le~Yq~LfylLQ---t~P~--yla~L~~~~~~~~~~~~~~~v~~~lf~~~~~~REe~lll~li~~ll~~Ei~~~~~~~~~ 85 (387)
T 3fay_A 11 LEAYQHLFYLLQ---TNPT--YLAKLIFQMPQNKSTKFMDSVIFTLYNYASNQREEYLLLRLFKTALQEEIKSKVDQIQE 85 (387)
T ss_dssp HHHHHHHHHHHH---HCHH--HHHHHHHTSCCCSCCHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHHHHHHc---CCHH--HHHHHHHhcChhhhhHHHHHHHHhhhCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 456888888885 2332 344566666665444 4557899999984 56999999999999997 789999
Q ss_pred ccccCchhHHHHHHHHH-HhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCC---------------------------
Q psy14861 1001 LFRGNSLGSKLMAFCFK-IYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP--------------------------- 1052 (1648)
Q Consensus 1001 LfR~NS~~Tkll~~y~r-~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~--------------------------- 1052 (1648)
+|||||+|||+++.|+| ..|+.||+++|+|+|++|+++++++||+||.+++.
T Consensus 86 lfR~Ns~~tk~l~~y~r~~~g~~yL~~~L~~~i~~i~~~~~l~~E~DP~kiy~~~~~~~E~~~G~~s~~~~~v~~e~al~ 165 (387)
T 3fay_A 86 IVTGNPTVIKMVVSFNRGARGQNALRQILAPVVKEIMDDKSLNIKTDPVDIYKSWVNQMESQTGEASKLPYDVTPEQALA 165 (387)
T ss_dssp HHHSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHCTTCCCCCCHHHHHHHHHHHHHHHHSSCCSSCSSCCHHHHTT
T ss_pred HHcCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCCCCeecCHHHHHHHHHHHHHHhcCCCccCCCCCCHHHhhc
Confidence 99999999999999999 79999999999999999999877899999998731
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhhCCCCCCcc-chhHHHHHHhHhhhhhccCC
Q psy14861 1053 ----SENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNN-IGAVGTVIFLRFINPAIVTP 1127 (1648)
Q Consensus 1053 ----~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~kFP~~~e~~-~~aVg~fiFLRFicPAIvsP 1127 (1648)
.+.+++|+++|+.++++||++|++|+++||+++|+||+++++.+.+|||+.++.. +.+||+|+|+|||||||++|
T Consensus 166 ~~ev~~~l~~n~~~L~~~~~~~~~~I~~s~~~~P~~lR~i~~~l~~~~~~kfp~~~~~~~~~~vg~flflRFi~PAIvsP 245 (387)
T 3fay_A 166 HEEVKTRLDSSIRNMRAVTDKFLSAIVSSVDKIPYGMRFIAKVLKDSLHEKFPDAGEDELLKIIGNLLYYRYMNPAIVAP 245 (387)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHCCCCCHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhhHHhCCh
Confidence 1235889999999999999999999999999999999999999999999765443 67999999999999999999
Q ss_pred cccCCccCCC----ChhhhhhhHHHHHHHHHhhccCCCC-CccccchhHHHHHHHHHHHHHHHHHhhcCCCCCC------
Q psy14861 1128 QEMGIINKTV----PPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIARQFFIQIASDCVTED------ 1196 (1648)
Q Consensus 1128 e~fgl~~~~p----~~~~rR~L~liaKvLQnlAN~~~F~-KE~~m~~lN~fi~~~~~~~~~fl~~is~~~~~~~------ 1196 (1648)
+.||+++.+| ++++||+|++||||||++||++.|+ ||+||.|||+|+.++.+++++|+.+++++++.++
T Consensus 246 ~~fgl~~~~p~~~~~~~~rr~L~liaKvLQ~lan~~~f~~ke~~m~~lN~fi~~~~~~~~~fl~~i~~v~~~e~~~~~d~ 325 (387)
T 3fay_A 246 DAFDIIDLSAGGQLTTDQRRNLGSIAKMLQHAASNKMFLGDNAHLSIINEYLSQSYQKFRRFFQTACDVPELQDKFNVDE 325 (387)
T ss_dssp TTTTSSCCCTTCCCCHHHHHHHHHHHHHHHHHHTTCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHTTCSS
T ss_pred HhcCcccCCcccCCCHHHHhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcCchh
Confidence 9999998754 7899999999999999999999996 8999999999999999999999999998776543
Q ss_pred -----cCCCcccccchhhHHHHHHHHHHHHHHHhhhhccCccccccCCCccchHHHHHhhcCCCCC
Q psy14861 1197 -----AGAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEH 1257 (1648)
Q Consensus 1197 -----~~~~~~~~i~~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~~~~~~~D~L~~lL~~LG~P~~ 1257 (1648)
...+|..+|+.+|++.+|++|++|++.|++ .+.|+|+.+|.+||++|.
T Consensus 326 y~dl~~~~kp~l~I~~~ei~~lh~ll~~~~~~i~p-------------~~~D~L~~il~~Lg~~~~ 378 (387)
T 3fay_A 326 YSDLVTLTKPVIYISIGEIINTHTLLLDHQDAIAP-------------EHNDPIHELLDDLGEVPT 378 (387)
T ss_dssp STTTCCSSSCCCCCCHHHHHHHHHHHHHTHHHHCC-------------STTCHHHHHHHHHCSCCC
T ss_pred HHHHHhccCCeEEecHHHHHHHHHHHHHHHHHhCC-------------CCcChHHHHHHHcCCCCC
Confidence 135788999999999999999999999973 256999999999999984
No 8
>3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha, calmodulin-binding, cell membrane, membrane, phosphoprotein, membrane protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.7e-51 Score=495.47 Aligned_cols=312 Identities=23% Similarity=0.409 Sum_probs=274.4
Q ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHhcCcccHHH-HHHHHHHhhccCCC------hHHHHHHHHHHHHhc-cCCccc
Q psy14861 287 ADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDE-LARVFVTLFDAKHM------LPPLLWNMFYREVEV-SDCMQT 358 (1648)
Q Consensus 287 ~~~ye~l~~Ll~~~~~~~~l~~~~~l~~~~~~~~~d~-la~~ll~lF~~~~~------l~~LL~~Li~~EI~~-t~~~~t 358 (1648)
-+.|++|+.+|+. +|. ..+.|...++..+.+. +..+++++|++... +.+|++.+++.||+. ++++++
T Consensus 11 le~Yq~LfylLQt---~P~--yla~L~~~~~~~~~~~~~~~v~~~lf~~~~~~REe~lll~li~~ll~~Ei~~~~~~~~~ 85 (387)
T 3fay_A 11 LEAYQHLFYLLQT---NPT--YLAKLIFQMPQNKSTKFMDSVIFTLYNYASNQREEYLLLRLFKTALQEEIKSKVDQIQE 85 (387)
T ss_dssp HHHHHHHHHHHHH---CHH--HHHHHHHTSCCCSCCHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHHHHHHcC---CHH--HHHHHHHhcChhhhhHHHHHHHHhhhCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 3678999999884 343 4456677777766555 45799999998764 678889999999997 789999
Q ss_pred ccccCchhHHHHHHHHH-HhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCC----------------------h----
Q psy14861 359 LFRGNSLGSKLMAFCFK-IYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDP----------------------S---- 411 (1648)
Q Consensus 359 LfR~NS~~tkll~~y~r-~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~----------------------~---- 411 (1648)
+|||||+|||++..|+| ..|+.||+++|+|+|++|+++++++||+||.+++. .
T Consensus 86 lfR~Ns~~tk~l~~y~r~~~g~~yL~~~L~~~i~~i~~~~~l~~E~DP~kiy~~~~~~~E~~~G~~s~~~~~v~~e~al~ 165 (387)
T 3fay_A 86 IVTGNPTVIKMVVSFNRGARGQNALRQILAPVVKEIMDDKSLNIKTDPVDIYKSWVNQMESQTGEASKLPYDVTPEQALA 165 (387)
T ss_dssp HHHSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHCTTCCCCCCHHHHHHHHHHHHHHHHSSCCSSCSSCCHHHHTT
T ss_pred HHcCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCCCCeecCHHHHHHHHHHHHHHhcCCCccCCCCCCHHHhhc
Confidence 99999999999999998 69999999999999999999888899999998731 0
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhHCCCCCccc-chhHHHHHHHHhhhccccCC
Q psy14861 412 -----ENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNN-IGAVGTVIFLRFINPAIVTP 485 (1648)
Q Consensus 412 -----e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~rFp~~~~~~-~~aVg~fiFLRFi~PAIvsP 485 (1648)
+.+++|+++|+.++++||++|++|++.||++|||||+++++.+.+|||+.++.. +.+||+|+|+|||||||++|
T Consensus 166 ~~ev~~~l~~n~~~L~~~~~~~~~~I~~s~~~~P~~lR~i~~~l~~~~~~kfp~~~~~~~~~~vg~flflRFi~PAIvsP 245 (387)
T 3fay_A 166 HEEVKTRLDSSIRNMRAVTDKFLSAIVSSVDKIPYGMRFIAKVLKDSLHEKFPDAGEDELLKIIGNLLYYRYMNPAIVAP 245 (387)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHCCCCCHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhhHHhCCh
Confidence 124789999999999999999999999999999999999999999999976433 68999999999999999999
Q ss_pred cccCCccCC----CChhhhhhhHHHHHHhHHhhcccccC-ccccCcchHHHHHHhHHHHHHHHHHhhcCCCCcCC-----
Q psy14861 486 QEMGIINKT----VPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDA----- 555 (1648)
Q Consensus 486 e~fglv~~~----~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~~m~~lN~fi~~~~~~~~~fl~~i~~~~~~e~~----- 555 (1648)
+.||+++.+ +++.+||||++||||||++||++.|+ ||+||.|||+|+.++.+++++|+.+++++++.|+.
T Consensus 246 ~~fgl~~~~p~~~~~~~~rr~L~liaKvLQ~lan~~~f~~ke~~m~~lN~fi~~~~~~~~~fl~~i~~v~~~e~~~~~d~ 325 (387)
T 3fay_A 246 DAFDIIDLSAGGQLTTDQRRNLGSIAKMLQHAASNKMFLGDNAHLSIINEYLSQSYQKFRRFFQTACDVPELQDKFNVDE 325 (387)
T ss_dssp TTTTSSCCCTTCCCCHHHHHHHHHHHHHHHHHHTTCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHTTCSS
T ss_pred HhcCcccCCcccCCCHHHHhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcCchh
Confidence 999999865 47899999999999999999999996 89999999999999999999999999988765432
Q ss_pred ------CCCCCcccChHHHHHHHHHHHHHHHHHhhhhccCccccccCCCCcchHHHHHhhcCCCCCC
Q psy14861 556 ------GAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEHK 616 (1648)
Q Consensus 556 ------~~~~~~~is~~ei~~LHr~L~~~~~~I~~~L~~~~~~~~~~~~~fD~l~~lL~~LG~P~~~ 616 (1648)
..+|.++|+.+|++.+|++|++|++.|++ ..+ |+|+++|.+||++|..
T Consensus 326 y~dl~~~~kp~l~I~~~ei~~lh~ll~~~~~~i~p----~~~---------D~L~~il~~Lg~~~~~ 379 (387)
T 3fay_A 326 YSDLVTLTKPVIYISIGEIINTHTLLLDHQDAIAP----EHN---------DPIHELLDDLGEVPTI 379 (387)
T ss_dssp STTTCCSSSCCCCCCHHHHHHHHHHHHHTHHHHCC----STT---------CHHHHHHHHHCSCCCT
T ss_pred HHHHHhccCCeEEecHHHHHHHHHHHHHHHHHhCC----CCc---------ChHHHHHHHcCCCCCh
Confidence 24788999999999999999999999984 333 9999999999999853
No 9
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=100.00 E-value=8e-47 Score=471.60 Aligned_cols=298 Identities=22% Similarity=0.365 Sum_probs=262.6
Q ss_pred hhhHHHHHHHHHhhhcCCchHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCC-CcccccccCch
Q psy14861 929 ADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSD-CMQTLFRGNSL 1007 (1648)
Q Consensus 929 ~~~ye~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~-~~~~LfR~NS~ 1007 (1648)
.+.|++|.++|+ .....++..+..+++..+.|++|..|+++|.++|.+.+|++.+++.||+++. ..++||||||+
T Consensus 163 ~~~Y~~L~~lL~----~~~~~l~~~l~~~~~~~~~~~~a~~Lv~if~~~~~~~~ll~~l~~~Ei~~~~~~~~~lfR~Ns~ 238 (483)
T 3bxj_A 163 MELYKEFAEYVT----NHYRMLCAVLEPALNVKGKEEVASALVHILQSTGKAKDFLSDMAMSEVDRFMEREHLIFRENTL 238 (483)
T ss_dssp GGGGHHHHHHHH----TTHHHHHHHHHHHBCHHHHHHHHHHHHHHHHHTTCSBHHHHHHHHHHHHHCSSSSSTTSCSSSH
T ss_pred HHHHHHHHHHHh----hchHHHHHHhccccChhhHHHHHHHHHHHHHHcChHHHHHHHHHHHHHhhhcCChhhhhccCCH
Confidence 457899999886 2333466666777788899999999999999999999999999999999975 57999999999
Q ss_pred hHHHHHHHHHHhchHHHHHHHHHhHHHHHhcCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHH
Q psy14861 1008 GSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRS 1087 (1648)
Q Consensus 1008 ~Tkll~~y~r~~G~~YL~~~L~p~i~~ii~~~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~ 1087 (1648)
+||+++.|+|..|++||+++|+|+|++|+++ +.+||+||.+++. +++++|.++|+.+++.++++|++|++.||+++|+
T Consensus 239 ~tk~~~~y~r~~g~~yL~~~L~~~i~~i~~~-~~~~EiDP~ki~~-~~l~~~~~~L~~~~~~~~~~I~~s~~~~P~~lr~ 316 (483)
T 3bxj_A 239 ATKAIEEYMRLIGQKYLKDAIGEFIRALYES-EENCEVDPIKCTA-SSLAEHQANLRMCCELALCKVVNSHCVFPRELKE 316 (483)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS-CCCCCCCTTTSCT-TTHHHHHHHHHHHHHHHHHHHHGGGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCcccChhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhHHhCcHHHHH
Confidence 9999999999999999999999999999996 7899999999986 4578999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCC-CCcc
Q psy14861 1088 MCHCLYQVL-SKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF-SKEA 1165 (1648)
Q Consensus 1088 Ic~~i~~~v-~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F-~KE~ 1165 (1648)
+|+++++.+ .++|| +..+.+||+|||||||||||++|+.||+++..|++.+||+|++|||+||++||++.| +||+
T Consensus 317 i~~~l~~~~~~~~~p---~~~~~~v~~fiflRfi~PAIvsP~~fgl~~~~p~~~~~r~L~liaKvLQ~lan~~~f~~ke~ 393 (483)
T 3bxj_A 317 VFASWRLRCAERGRE---DIADRLISASLFLRFLCPAIMSPSLFGLMQEYPDEQTSRTLTLIAKVIQNLANFSKFTSKED 393 (483)
T ss_dssp HHHHHHHHHHHTTCH---HHHHHHHHHHHTTTTHHHHHHCGGGGTSCSSCCCHHHHHHHHHHHHHHHHHHTTCCCCSTTT
T ss_pred HHHHHHHHHhhccCC---chHHHHHHHHHHHHHHhHHhCChHhhCCcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCccH
Confidence 999999876 56788 566789999999999999999999999999999999999999999999999999999 4999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCcccccc-hhhHHHHHHHHHHHHHHHhhhhccCccccccCCCccch
Q psy14861 1166 HMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFIS-DTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDK 1244 (1648)
Q Consensus 1166 ~m~~lN~fi~~~~~~~~~fl~~is~~~~~~~~~~~~~~~i~-~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~~~~~~~D~ 1244 (1648)
||.|||+|+.++.+++++|+.+++++++.++. .....+++ .+|+..+|++|++|++.|++
T Consensus 394 ~m~~lN~fi~~~~~~~~~fl~~i~~v~~~~~~-~~~~~~~dl~~ei~~lH~ll~~~~~~l~~------------------ 454 (483)
T 3bxj_A 394 FLGFMNEFLELEWGSMQQFLYEISNLDTLTNS-SSFEGYIDLGRELSTLHALLWEVLPQLSK------------------ 454 (483)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHTSCCCCSSCC-C---CCCCHHHHHHHHHHHHHHHGGGSCH------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhCCCCCcccc-cccccccchHHHHHHHHHHHHHHHHHHhH------------------
Confidence 99999999999999999999999886554432 11112333 26899999999999998863
Q ss_pred HHHHHhhcCCCC
Q psy14861 1245 MATLLAYLGPPE 1256 (1648)
Q Consensus 1245 L~~lL~~LG~P~ 1256 (1648)
+++.+||++|
T Consensus 455 --~~~~~Lg~~~ 464 (483)
T 3bxj_A 455 --EALLKLGPLP 464 (483)
T ss_dssp --HHHHHTTTHH
T ss_pred --HHHHhhcCcc
Confidence 2677888776
No 10
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=100.00 E-value=2.7e-46 Score=466.82 Aligned_cols=299 Identities=22% Similarity=0.352 Sum_probs=263.3
Q ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHhcCcccHHHHHHHHHHhhccCCChHHHHHHHHHHHHhccC-CcccccccCch
Q psy14861 287 ADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSD-CMQTLFRGNSL 365 (1648)
Q Consensus 287 ~~~ye~l~~Ll~~~~~~~~l~~~~~l~~~~~~~~~d~la~~ll~lF~~~~~l~~LL~~Li~~EI~~t~-~~~tLfR~NS~ 365 (1648)
.+.|.+|.++|+. ....++..+..+++..+.|++|+.++++|.++|++.++|+.|++.||+.+. .+++||||||+
T Consensus 163 ~~~Y~~L~~lL~~----~~~~l~~~l~~~~~~~~~~~~a~~Lv~if~~~~~~~~ll~~l~~~Ei~~~~~~~~~lfR~Ns~ 238 (483)
T 3bxj_A 163 MELYKEFAEYVTN----HYRMLCAVLEPALNVKGKEEVASALVHILQSTGKAKDFLSDMAMSEVDRFMEREHLIFRENTL 238 (483)
T ss_dssp GGGGHHHHHHHHT----THHHHHHHHHHHBCHHHHHHHHHHHHHHHHHTTCSBHHHHHHHHHHHHHCSSSSSTTSCSSSH
T ss_pred HHHHHHHHHHHhh----chHHHHHHhccccChhhHHHHHHHHHHHHHHcChHHHHHHHHHHHHHhhhcCChhhhhccCCH
Confidence 4578888888772 233456667777777889999999999999999999999999999999875 57999999999
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhHHHHhccCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHH
Q psy14861 366 GSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRS 445 (1648)
Q Consensus 366 ~tkll~~y~r~~G~~YL~~~L~p~i~~Ii~~~~~~~EiDP~ki~~~e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~lR~ 445 (1648)
+||+++.|+|..|+.||+++|+|+|++|+++ +.+||+||.+++.+ ++++|.++|+.+++.|+++|++|++.||++||+
T Consensus 239 ~tk~~~~y~r~~g~~yL~~~L~~~i~~i~~~-~~~~EiDP~ki~~~-~l~~~~~~L~~~~~~~~~~I~~s~~~~P~~lr~ 316 (483)
T 3bxj_A 239 ATKAIEEYMRLIGQKYLKDAIGEFIRALYES-EENCEVDPIKCTAS-SLAEHQANLRMCCELALCKVVNSHCVFPRELKE 316 (483)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS-CCCCCCCTTTSCTT-THHHHHHHHHHHHHHHHHHHHGGGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCcccChhhcCcc-cHHHHHHHHHHHHHHHHHHHHHhHHhCcHHHHH
Confidence 9999999999999999999999999999986 58999999999864 578999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChhhhhhhHHHHHHhHHhhcccccC-ccc
Q psy14861 446 MCHCLYQVL-SKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS-KEA 523 (1648)
Q Consensus 446 Ic~~i~~~v-~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~~rR~L~lIaKvLQnlAN~~~f~-KE~ 523 (1648)
+|+++++.+ .++||+ ....+||+|+|||||||||++|+.||+++..|++.+||+|++|||+||++||++.|+ ||+
T Consensus 317 i~~~l~~~~~~~~~p~---~~~~~v~~fiflRfi~PAIvsP~~fgl~~~~p~~~~~r~L~liaKvLQ~lan~~~f~~ke~ 393 (483)
T 3bxj_A 317 VFASWRLRCAERGRED---IADRLISASLFLRFLCPAIMSPSLFGLMQEYPDEQTSRTLTLIAKVIQNLANFSKFTSKED 393 (483)
T ss_dssp HHHHHHHHHHHTTCHH---HHHHHHHHHHTTTTHHHHHHCGGGGTSCSSCCCHHHHHHHHHHHHHHHHHHTTCCCCSTTT
T ss_pred HHHHHHHHHhhccCCc---hHHHHHHHHHHHHHHhHHhCChHhhCCcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCccH
Confidence 999999876 456775 457899999999999999999999999999999999999999999999999999995 999
Q ss_pred cCcchHHHHHHhHHHHHHHHHHhhcCCCCcCCCCCCCcccCh-HHHHHHHHHHHHHHHHHhhhhccCccccccCCCCcch
Q psy14861 524 HMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISD-TNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDK 602 (1648)
Q Consensus 524 ~m~~lN~fi~~~~~~~~~fl~~i~~~~~~e~~~~~~~~~is~-~ei~~LHr~L~~~~~~I~~~L~~~~~~~~~~~~~fD~ 602 (1648)
||.|||+|+.++.+++++||.+++++++.++... ...|++. +|+..+|++|++|++.|++
T Consensus 394 ~m~~lN~fi~~~~~~~~~fl~~i~~v~~~~~~~~-~~~~~dl~~ei~~lH~ll~~~~~~l~~------------------ 454 (483)
T 3bxj_A 394 FLGFMNEFLELEWGSMQQFLYEISNLDTLTNSSS-FEGYIDLGRELSTLHALLWEVLPQLSK------------------ 454 (483)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHTSCCCCSSCCC----CCCCHHHHHHHHHHHHHHHGGGSCH------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhCCCCCcccccc-cccccchHHHHHHHHHHHHHHHHHHhH------------------
Confidence 9999999999999999999999988766654321 2235554 5899999999999999873
Q ss_pred HHHHHhhcCCCCC
Q psy14861 603 MATLLAYLGPPEH 615 (1648)
Q Consensus 603 l~~lL~~LG~P~~ 615 (1648)
++|.+||++|.
T Consensus 455 --~~~~~Lg~~~~ 465 (483)
T 3bxj_A 455 --EALLKLGPLPR 465 (483)
T ss_dssp --HHHHHTTTHHH
T ss_pred --HHHHhhcCccc
Confidence 27888888763
No 11
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.06 E-value=4.9e-11 Score=138.39 Aligned_cols=68 Identities=59% Similarity=1.077 Sum_probs=45.5
Q ss_pred CCCcchHHHHHHhcchhhhhhhccccccceeccCccCCCCcEEEEEeccccccCCchHHHHHHHHHHh
Q psy14861 635 MSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTM 702 (1648)
Q Consensus 635 ~~~~~~~efm~r~~~~~~~~~~~i~~~~~f~~~~~s~~g~pV~~~i~rr~~~~~~d~e~LvY~il~tl 702 (1648)
+++++|||||.|+++++.++|+.|++.++|||+|+++||+||||+++||++.+.+|+|.|+||+++++
T Consensus 3 ~~~~~~~efM~r~~~~~~e~~~~i~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl 70 (290)
T 3peg_A 3 MGSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTL 70 (290)
T ss_dssp ---------------------CCGGGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhhccChhhhhhhhcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999875
No 12
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=98.82 E-value=3.8e-09 Score=125.02 Aligned_cols=139 Identities=12% Similarity=0.132 Sum_probs=115.5
Q ss_pred CeEEecCCCCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHhccccc------CCeEEEEEcCCCCCCCc--ccHHHHHHH
Q psy14861 1304 NIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTMKPFCH------APYELVIDFTHASSENR--FKTEFLQKW 1375 (1648)
Q Consensus 1304 ~ify~~g~skdG~PV~v~i~r~~~~~~~D~e~LiY~vl~tl~~~~~------~~f~lV~D~T~f~~~n~--p~~~~l~~~ 1375 (1648)
.+++-.|.|++||||+++.+++++....+.+.++-+++..++.... ..+.+|+|++|++..+. .+..+++++
T Consensus 143 ~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~ 222 (316)
T 3hx3_A 143 YPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKM 222 (316)
T ss_dssp SSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHH
T ss_pred CccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHH
Confidence 4466678999999999999999988888888777777666655433 35899999999987653 456789999
Q ss_pred HHHhhHHHHhcccEEEEEcCChHHHHHHHHhhccccccccCCceEEEcC-ChhhhhhcCCCCCc--ccCccc
Q psy14861 1376 FYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFLD-SPSKLNDYIDHNQQ--KLPGAT 1444 (1648)
Q Consensus 1376 ~~llP~~~~kNl~~iYi~Npn~~~r~~~k~~~~~~s~~~k~~~ki~fi~-sl~eL~~~i~~~~l--~LP~~t 1444 (1648)
..++...|..+++++||+|+++++..+|+.+.+|+++ +...|+++.+ +.++|.++||+++| .++|..
T Consensus 223 ~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~--kt~~KI~~~~~~~~~L~~~I~~~~LP~eyGG~~ 292 (316)
T 3hx3_A 223 VDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKS--KLLERVFVHGDDLSGFYQEIDENILPSDFGGTL 292 (316)
T ss_dssp HHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCH--HHHTTEEEEETCCHHHHHHSCGGGSBGGGTSSB
T ss_pred HHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCH--HhhhheEEeCCCHHHHHhhCCHhhCcHhhCCCC
Confidence 9999999999999999999999999999999999998 7778888884 57889999998876 455543
No 13
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=98.81 E-value=4.3e-09 Score=120.98 Aligned_cols=136 Identities=10% Similarity=0.055 Sum_probs=111.6
Q ss_pred eEEecCCCCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHhccccc------CCeEEEEEcCCCCCCCc--ccHHHHHHHH
Q psy14861 1305 IFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTMKPFCH------APYELVIDFTHASSENR--FKTEFLQKWF 1376 (1648)
Q Consensus 1305 ify~~g~skdG~PV~v~i~r~~~~~~~D~e~LiY~vl~tl~~~~~------~~f~lV~D~T~f~~~n~--p~~~~l~~~~ 1376 (1648)
..+-.|.|++|+||+++.+++.++...+.+.++-+.+.+++.... ..+.+|+|++|++..+. +..++++++.
T Consensus 85 ~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~ 164 (262)
T 1r5l_A 85 HGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIA 164 (262)
T ss_dssp EEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHH
T ss_pred ccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHHHHH
Confidence 356678999999999999999988888776666555555543322 35889999999987653 4568899999
Q ss_pred HHhhHHHHhcccEEEEEcCChHHHHHHHHhhccccccccCCceEEEcCC--hhhhhhcCCCCCc--ccCcc
Q psy14861 1377 YVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFLDS--PSKLNDYIDHNQQ--KLPGA 1443 (1648)
Q Consensus 1377 ~llP~~~~kNl~~iYi~Npn~~~r~~~k~~~~~~s~~~k~~~ki~fi~s--l~eL~~~i~~~~l--~LP~~ 1443 (1648)
.++-..|..+++++||+||++++...|+...+|+++ +...|++|+++ .++|.++|| ++| .++|.
T Consensus 165 ~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~--~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yGG~ 232 (262)
T 1r5l_A 165 AVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTE--KIKERIHMHGNNYKQSLLQHFP-DILPLEYGGE 232 (262)
T ss_dssp HHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCH--HHHTTEEECCSSCHHHHHHHST-TTSCGGGTCS
T ss_pred HHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCH--HHHhheEEeCCCcHHHHHHHhh-hhCcHhhCCC
Confidence 999999999999999999999999999999999998 78889999965 578999998 766 34444
No 14
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=98.65 E-value=1.8e-08 Score=118.07 Aligned_cols=130 Identities=15% Similarity=0.224 Sum_probs=103.6
Q ss_pred EecCCCCCCCcEEEEEeeecCCCC----CCHHHHHHHHHHHhccc--------------ccCCeEEEEEcCCCCCCCccc
Q psy14861 1307 YQAGKSRNGHPVFYYIARRYKTFE----TNADLLIYHVILTMKPF--------------CHAPYELVIDFTHASSENRFK 1368 (1648)
Q Consensus 1307 y~~g~skdG~PV~v~i~r~~~~~~----~D~e~LiY~vl~tl~~~--------------~~~~f~lV~D~T~f~~~n~p~ 1368 (1648)
+..|.|++||||+++.+++++... .+.+.++-+++..++.. .-..+.+|+|++|++..+.++
T Consensus 107 ~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~ 186 (296)
T 1aua_A 107 YYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYS 186 (296)
T ss_dssp EEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHH
T ss_pred eecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHH
Confidence 345789999999999998876433 35665554444433321 123488999999998765543
Q ss_pred -HHHHHHHHHHhhHHHHhcccEEEEEcCChHHHHHHHHhhccccccccCCceEEEcCC--hhhhhhcCCCCCc
Q psy14861 1369 -TEFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFLDS--PSKLNDYIDHNQQ 1438 (1648)
Q Consensus 1369 -~~~l~~~~~llP~~~~kNl~~iYi~Npn~~~r~~~k~~~~~~s~~~k~~~ki~fi~s--l~eL~~~i~~~~l 1438 (1648)
..+++++..++-..|...++++||+|+++++...|+.+.+|+++ +...|++|+++ .++|.++||+++|
T Consensus 187 ~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~--~t~~KI~~~~~~~~~~L~~~i~~~~L 257 (296)
T 1aua_A 187 VMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDP--VTVSKIFILGSSYQKELLKQIPAENL 257 (296)
T ss_dssp HHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCH--HHHTTEEECCSCCHHHHTTTSCSSSS
T ss_pred HHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCH--hhcceEEEeCcccHHHHHhhCCHhhC
Confidence 56788999999999999999999999999999999999999998 78899999976 5779999998876
No 15
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=98.58 E-value=4.2e-08 Score=120.00 Aligned_cols=128 Identities=13% Similarity=0.156 Sum_probs=106.6
Q ss_pred cCCCCCCCcEEEEEeeecCCC----CCCHHHHHHHHHHHhcccc-------------cCCeEEEEEcCCCCCCCc--ccH
Q psy14861 1309 AGKSRNGHPVFYYIARRYKTF----ETNADLLIYHVILTMKPFC-------------HAPYELVIDFTHASSENR--FKT 1369 (1648)
Q Consensus 1309 ~g~skdG~PV~v~i~r~~~~~----~~D~e~LiY~vl~tl~~~~-------------~~~f~lV~D~T~f~~~n~--p~~ 1369 (1648)
.|.|++||||+++.+++++.. ..+.+.++-+++..++... -..+.+|+|++|++..+. +..
T Consensus 89 ~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~ 168 (403)
T 1olm_A 89 CGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAV 168 (403)
T ss_dssp EEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHH
T ss_pred eccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHH
Confidence 478999999999999988765 3566666666655544321 246899999999987754 357
Q ss_pred HHHHHHHHHhhHHHHhcccEEEEEcCChHHHHHHHHhhccccccccCCceEEEcCC--hhhhhhcCCCCCc
Q psy14861 1370 EFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFLDS--PSKLNDYIDHNQQ 1438 (1648)
Q Consensus 1370 ~~l~~~~~llP~~~~kNl~~iYi~Npn~~~r~~~k~~~~~~s~~~k~~~ki~fi~s--l~eL~~~i~~~~l 1438 (1648)
++++++..++-..|...++++||+|+++++...|+.+.+|+++ +...|++|+++ .++|.++||+++|
T Consensus 169 ~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~--~t~~KI~~~~~~~~~~L~~~I~~~~L 237 (403)
T 1olm_A 169 EAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSE--DTRKKIMVLGANWKEVLLKHISPDQV 237 (403)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCH--HHHHTEEECCTTHHHHHTTTSCGGGS
T ss_pred HHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCH--hhhceEEEEChhHHHHHHhhcChhhC
Confidence 7899999999999999999999999999999999999999998 78899999976 5679999998876
No 16
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=98.50 E-value=5.5e-08 Score=115.20 Aligned_cols=131 Identities=14% Similarity=0.162 Sum_probs=102.4
Q ss_pred EEecCCCCCCCcEEEEEeeecCCCCC----CHHHHHHHHHHHhccc--------------ccCCeEEEEEcCCCCCCCcc
Q psy14861 1306 FYQAGKSRNGHPVFYYIARRYKTFET----NADLLIYHVILTMKPF--------------CHAPYELVIDFTHASSENRF 1367 (1648)
Q Consensus 1306 fy~~g~skdG~PV~v~i~r~~~~~~~----D~e~LiY~vl~tl~~~--------------~~~~f~lV~D~T~f~~~n~p 1367 (1648)
.|-.|.|++||||+++.+++++...+ +.+.++-+++..++.+ .-....+|+|++|++..+.+
T Consensus 121 ~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~ 200 (320)
T 3q8g_A 121 QYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAY 200 (320)
T ss_dssp EEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHH
T ss_pred ceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHH
Confidence 34458899999999999998865432 4444443333222211 11335799999999876654
Q ss_pred c-HHHHHHHHHHhhHHHHhcccEEEEEcCChHHHHHHHHhhccccccccCCceEEEcCC--hhhhhhcCCCCCc
Q psy14861 1368 K-TEFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFLDS--PSKLNDYIDHNQQ 1438 (1648)
Q Consensus 1368 ~-~~~l~~~~~llP~~~~kNl~~iYi~Npn~~~r~~~k~~~~~~s~~~k~~~ki~fi~s--l~eL~~~i~~~~l 1438 (1648)
+ ..+++++..++-..|...++++||+|+++++..+|+...+|+++ +...|++|+++ .++|.++||+++|
T Consensus 201 ~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~--~t~~KI~~~~~~~~~~L~~~i~~~~L 272 (320)
T 3q8g_A 201 HVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDP--VTVSKIFILGSSYKKELLKQIPIENL 272 (320)
T ss_dssp HTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCH--HHHHTEEECCTTHHHHHHHHSCGGGS
T ss_pred HHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCH--HHhhhEEEeCCCcHHHHHhhCChhhC
Confidence 3 57788899999999999999999999999999999999999998 78899999976 4789999998876
No 17
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=98.15 E-value=6.6e-07 Score=102.39 Aligned_cols=50 Identities=66% Similarity=1.192 Sum_probs=47.6
Q ss_pred hhhhccccccceeccCccCCCCcEEEEEeccccccCCchHHHHHHHHHHh
Q psy14861 653 EEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTM 702 (1648)
Q Consensus 653 ~~~~~i~~~~~f~~~~~s~~g~pV~~~i~rr~~~~~~d~e~LvY~il~tl 702 (1648)
++|+.|++.++|||+|+++||+||||+++||+..+++|+|.|+||+++++
T Consensus 2 ed~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl 51 (256)
T 3pg7_A 2 EEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTL 51 (256)
T ss_dssp TTTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHH
T ss_pred cchhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999876
No 18
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=92.95 E-value=0.61 Score=58.10 Aligned_cols=165 Identities=12% Similarity=0.171 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChh
Q psy14861 1061 RELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPP 1140 (1648)
Q Consensus 1061 ~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~ 1140 (1648)
..|.++++.++++|.+....+|+.++|++..+=+...++--.+++..+..=+.-+.|||=.-.|=+|+- +.+.+.++.
T Consensus 436 gTlQkfVDdlF~sIls~~~~~P~aIKY~FDfLDeqA~kh~I~Dpev~H~WKtNsLpLRFWVNiiKNPqF--vFDI~ks~~ 513 (644)
T 3hm6_X 436 GTLQKFVDDLFQVILSTSRPVPLAVKYFFDLLDEQAQQHGISDQDTIHIWKTNSLPLRFWINIIKNPQF--VFDVQTSDN 513 (644)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTHHHHHHCGGG--TBSCCCCHH
T ss_pred hhHHHHHHHHHHHHHcCCCCCCchHHHHhhhhHhHHHhcCCCChhhhhhhhhcCchHhHHHHhhcCcce--EEecCCCcc
Confidence 346677788888899888899999999999998776665433344445566788999999999999995 345556899
Q ss_pred hhhhhHHHHHHHHHhhccCCC--CCccccchhHHH-----HHHHHHHHHHHHHHhhcCCCCCCcC----------CCccc
Q psy14861 1141 VKRGLMLMSKILQNIANHVEF--SKEAHMIPFNDF-----LRAHFVIARQFFIQIASDCVTEDAG----------AHSMS 1203 (1648)
Q Consensus 1141 ~rR~L~liaKvLQnlAN~~~F--~KE~~m~~lN~f-----i~~~~~~~~~fl~~is~~~~~~~~~----------~~~~~ 1203 (1648)
+-..|..||.++.-..+-++- +|+ .|-|.. |-..++.+.+|+.+|...|+..++. .+...
T Consensus 514 vDacLSVIAQtfMDscS~sehkLgKd---SPsNKLLYAKdIp~Yk~~V~~yY~~I~~~p~iSdqemn~~Lae~Sr~h~~e 590 (644)
T 3hm6_X 514 MDAVLLVIAQTFMDACTLADHKLGRD---SPINKLLYARDIPRYKRMVERYYADIRQTVPASDQEMNSVLAELSWNYSGD 590 (644)
T ss_dssp HHHHHHHHHHHHHHHHCCCC---------CCHHHHHTTTTHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHSSCSC
T ss_pred cchHHHHHHHHHHHhccCccccccCC---CCchhhhccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhcc
Confidence 999999999999988876654 443 344443 3466778889999998877665431 11111
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhhhcc
Q psy14861 1204 FISDTNVLALHRLLYNHQEKIGDYLSS 1230 (1648)
Q Consensus 1204 ~i~~~~i~~LHr~L~~~~~~I~~~l~s 1230 (1648)
+-+..-+..|.+.+.+|.++|...|..
T Consensus 591 fn~~~AL~ELY~Yi~kY~~qi~~~Le~ 617 (644)
T 3hm6_X 591 LGARVALHELYKYINKYYDQIITALEE 617 (644)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 211122344555566666766654543
No 19
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=89.88 E-value=1.6 Score=54.47 Aligned_cols=165 Identities=16% Similarity=0.211 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHhhc---ccCCHHHHHHHHHHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCC
Q psy14861 1061 RELISWTKKVFDAIIDSA---DNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTV 1137 (1648)
Q Consensus 1061 ~~L~~~~~~~l~~I~~S~---~~~P~~lR~Ic~~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p 1137 (1648)
..|.++++.++++|.+.. ..+|+.++|++..+=+...++-=.+++.-+..=+.-+.|||=.-.|=+|+- +.+.+.
T Consensus 419 gTlQkfVDdlF~sIls~~~~~~~~P~aIKY~FDfLDeqA~kh~I~Dpev~H~WKtNsLpLRFWVNiiKNP~F--vFDi~k 496 (627)
T 3ig3_A 419 GTLQKFVDDLFETVFSTAHRGSALPLAIKYMFDFLDEQADQRQISDPDVRHTWKSNCLPLRFWVNVIKNPQF--VFDIHK 496 (627)
T ss_dssp HHHHHHHHHHHHHHTCSSGGGCCCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHTTTTHHHHHHHCGGG--TBSCCC
T ss_pred hhHHHHHHHHHHHHhccccCCCCCCccHHHHHHhhhhHHHhcCCCCchhhhhhhhCCchHHHHHHhhcCcce--eeeccC
Confidence 356677788888888774 479999999999998876665333334445566789999999999999995 334456
Q ss_pred ChhhhhhhHHHHHHHHHhhccCCC--CCccccchhHHH-----HHHHHHHHHHHHHHhhcCCCCCCcC----------CC
Q psy14861 1138 PPPVKRGLMLMSKILQNIANHVEF--SKEAHMIPFNDF-----LRAHFVIARQFFIQIASDCVTEDAG----------AH 1200 (1648)
Q Consensus 1138 ~~~~rR~L~liaKvLQnlAN~~~F--~KE~~m~~lN~f-----i~~~~~~~~~fl~~is~~~~~~~~~----------~~ 1200 (1648)
++.+-..|..||..+.-..+-++- +|+ .|-|.. |-..++.+.+|+.+|...|+..++. .+
T Consensus 497 s~~vDacLSVIAQtfmDsCS~sehkLgkd---SPsNKLLyAKdIp~Yk~~V~~yY~~I~~~p~iSdqemn~~Lae~S~~h 573 (627)
T 3ig3_A 497 NSITDACLSVVAQTFMDSCSTSEHRLGKD---SPSNKLLYAKDIPNYKSWVERYYRDIAKMASISDQDMDAYLVEQSRLH 573 (627)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCSCCCCCTT---SCHHHHHTTTTHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHT
T ss_pred CcccchhHHHHHHHHHhhhcccccccCCC---CCccchhccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999888776554 443 344433 3456778889999998876655431 01
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhhhhcc
Q psy14861 1201 SMSFISDTNVLALHRLLYNHQEKIGDYLSS 1230 (1648)
Q Consensus 1201 ~~~~i~~~~i~~LHr~L~~~~~~I~~~l~s 1230 (1648)
...+-+..-+..|.+.+.+|.++|...|..
T Consensus 574 ~~efn~~~AL~ELY~Y~~kY~~qi~~~Le~ 603 (627)
T 3ig3_A 574 ANDFNVLSALSELYFYVTKYRQEILTSLDR 603 (627)
T ss_dssp TTSSCHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111122334445556666777655543
No 20
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=89.10 E-value=2.4 Score=52.86 Aligned_cols=131 Identities=13% Similarity=0.212 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccCCCChh
Q psy14861 419 RELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPP 498 (1648)
Q Consensus 419 ~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~~~~~~ 498 (1648)
..|.++++.++++|.+....+|+.++|++.-+=+...+.--.+|+..+..=++-+.|||=.-.|-+|+- +.+.+-++.
T Consensus 436 gTlQkfVDdlF~sIls~~~~~P~aIKY~FDfLDeqA~kh~I~Dpev~H~WKtNsLpLRFWVNiiKNPqF--vFDI~ks~~ 513 (644)
T 3hm6_X 436 GTLQKFVDDLFQVILSTSRPVPLAVKYFFDLLDEQAQQHGISDQDTIHIWKTNSLPLRFWINIIKNPQF--VFDVQTSDN 513 (644)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTHHHHHHCGGG--TBSCCCCHH
T ss_pred hhHHHHHHHHHHHHHcCCCCCCchHHHHhhhhHhHHHhcCCCChhhhhhhhhcCchHhHHHHhhcCcce--EEecCCCcc
Confidence 467778899999999988899999999999998877776555555555677888999999999999995 234456889
Q ss_pred hhhhhHHHHHHhHHhhccccc--CccccCcchHHHH-----HHhHHHHHHHHHHhhcCCCCcC
Q psy14861 499 VKRGLMLMSKILQNIANHVEF--SKEAHMIPFNDFL-----RAHFVIARQFFIQIASDCVTED 554 (1648)
Q Consensus 499 ~rR~L~lIaKvLQnlAN~~~f--~KE~~m~~lN~fi-----~~~~~~~~~fl~~i~~~~~~e~ 554 (1648)
+-..|..||.++.-..+-+.- ||+ .|-|..+ -...+.+.+|+.+|...+...+
T Consensus 514 vDacLSVIAQtfMDscS~sehkLgKd---SPsNKLLYAKdIp~Yk~~V~~yY~~I~~~p~iSd 573 (644)
T 3hm6_X 514 MDAVLLVIAQTFMDACTLADHKLGRD---SPINKLLYARDIPRYKRMVERYYADIRQTVPASD 573 (644)
T ss_dssp HHHHHHHHHHHHHHHHCCCC---------CCHHHHHTTTTHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred cchHHHHHHHHHHHhccCccccccCC---CCchhhhccccHHHHHHHHHHHHHHHHhCCCCCH
Confidence 999999999999988776653 453 3555543 4556678899999987665443
No 21
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=83.70 E-value=5.9 Score=49.44 Aligned_cols=133 Identities=17% Similarity=0.253 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHhhc---ccCCHHHHHHHHHHHHHHHhHCCCCCcccchhHHHHHHHHhhhccccCCcccCCccC
Q psy14861 417 NRRELISWTKKVFDAIIDSA---DNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINK 493 (1648)
Q Consensus 417 n~~~L~~~~~~~l~~I~~S~---~~~P~~lR~Ic~~i~~~v~~rFp~~~~~~~~aVg~fiFLRFi~PAIvsPe~fglv~~ 493 (1648)
-...|.++++.++++|.+.. ..+|+.++|++.-+=+...+.--.+|+..+..=++-+.|||=.-.|-+|+- +.+.
T Consensus 417 tKgTlQkfVDdlF~sIls~~~~~~~~P~aIKY~FDfLDeqA~kh~I~Dpev~H~WKtNsLpLRFWVNiiKNP~F--vFDi 494 (627)
T 3ig3_A 417 TKGTLQKFVDDLFETVFSTAHRGSALPLAIKYMFDFLDEQADQRQISDPDVRHTWKSNCLPLRFWVNVIKNPQF--VFDI 494 (627)
T ss_dssp HHHHHHHHHHHHHHHHTCSSGGGCCCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHTTTTHHHHHHHCGGG--TBSC
T ss_pred hchhHHHHHHHHHHHHhccccCCCCCCccHHHHHHhhhhHHHhcCCCCchhhhhhhhCCchHHHHHHhhcCcce--eeec
Confidence 44677888999999999875 479999999999998887776555555555677899999999999999995 2344
Q ss_pred CCChhhhhhhHHHHHHhHHhhccccc--CccccCcchHHHH-----HHhHHHHHHHHHHhhcCCCCcC
Q psy14861 494 TVPPPVKRGLMLMSKILQNIANHVEF--SKEAHMIPFNDFL-----RAHFVIARQFFIQIASDCVTED 554 (1648)
Q Consensus 494 ~~~~~~rR~L~lIaKvLQnlAN~~~f--~KE~~m~~lN~fi-----~~~~~~~~~fl~~i~~~~~~e~ 554 (1648)
+-++.+-..|..||.++.-..+-+.- ||+ .|-|..+ -...+.+.+|+.+|...+...+
T Consensus 495 ~ks~~vDacLSVIAQtfmDsCS~sehkLgkd---SPsNKLLyAKdIp~Yk~~V~~yY~~I~~~p~iSd 559 (627)
T 3ig3_A 495 HKNSITDACLSVVAQTFMDSCSTSEHRLGKD---SPSNKLLYAKDIPNYKSWVERYYRDIAKMASISD 559 (627)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCCSCCCCCTT---SCHHHHHTTTTHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred cCCcccchhHHHHHHHHHhhhcccccccCCC---CCccchhccccHHHHHHHHHHHHHHHHhCCCCCH
Confidence 55899999999999999887776553 443 4556543 3456678899999987655443
Done!