RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14861
(1648 letters)
>1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS,
GAP, signal transduction, cancer, growth regulation, GTP
hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2
Length = 333
Score = 320 bits (821), Expect = 7e-99
Identities = 234/336 (69%), Positives = 282/336 (83%), Gaps = 6/336 (1%)
Query: 283 ETVLADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLL 342
ETVLADRFE LV+LVT++ D+GEL IAMALANVV SQ DELARV VTLFD++H+L LL
Sbjct: 1 ETVLADRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLL 60
Query: 343 WNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLL---DKAHV 399
WNMF +EVE++D MQTLFRGNSL SK+M FCFK+YGA+YLQ LL+PL+ ++ D HV
Sbjct: 61 WNMFSKEVELADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLLDPLLRIVITSSDWQHV 120
Query: 400 AFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFP 459
+FEVDP RL+PSE++E N+R L+ T+K F AII S+ FPPQLRS+CHCLYQV+S+RFP
Sbjct: 121 SFEVDPTRLEPSESLEENQRNLLQMTEKFFHAIISSSSEFPPQLRSVCHCLYQVVSQRFP 180
Query: 460 LQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF 519
QN+IGAVG+ +FLRFINPAIV+P E GI++K PP ++RGL LMSKILQ+IANHV F
Sbjct: 181 ---QNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPIIERGLKLMSKILQSIANHVLF 237
Query: 520 SKEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQ 579
+KE HM PFNDF++++F AR+FF+ IASDC T DA HS+SFISD NVLALHRLL+N+Q
Sbjct: 238 TKEEHMRPFNDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFISDGNVLALHRLLWNNQ 297
Query: 580 EKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEH 615
EKIG YLSS+RDHK VGRRPFDKMATLLAYLGPPEH
Sbjct: 298 EKIGQYLSSNRDHKAVGRRPFDKMATLLAYLGPPEH 333
Score = 320 bits (821), Expect = 7e-99
Identities = 234/336 (69%), Positives = 282/336 (83%), Gaps = 6/336 (1%)
Query: 925 ETVLADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLL 984
ETVLADRFE LV+LVT++ D+GEL IAMALANVV SQ DELARV VTLFD++H+L LL
Sbjct: 1 ETVLADRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLL 60
Query: 985 WNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLL---DKAHV 1041
WNMF +EVE++D MQTLFRGNSL SK+M FCFK+YGA+YLQ LL+PL+ ++ D HV
Sbjct: 61 WNMFSKEVELADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLLDPLLRIVITSSDWQHV 120
Query: 1042 AFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFP 1101
+FEVDP RL+PSE++E N+R L+ T+K F AII S+ FPPQLRS+CHCLYQV+S+RFP
Sbjct: 121 SFEVDPTRLEPSESLEENQRNLLQMTEKFFHAIISSSSEFPPQLRSVCHCLYQVVSQRFP 180
Query: 1102 LQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF 1161
QN+IGAVG+ +FLRFINPAIV+P E GI++K PP ++RGL LMSKILQ+IANHV F
Sbjct: 181 ---QNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPIIERGLKLMSKILQSIANHVLF 237
Query: 1162 SKEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQ 1221
+KE HM PFNDF++++F AR+FF+ IASDC T DA HS+SFISD NVLALHRLL+N+Q
Sbjct: 238 TKEEHMRPFNDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFISDGNVLALHRLLWNNQ 297
Query: 1222 EKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEH 1257
EKIG YLSS+RDHK VGRRPFDKMATLLAYLGPPEH
Sbjct: 298 EKIGQYLSSNRDHKAVGRRPFDKMATLLAYLGPPEH 333
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding
protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A*
3p7z_A* 2d4q_A*
Length = 256
Score = 273 bits (700), Expect = 1e-83
Identities = 167/260 (64%), Positives = 210/260 (80%), Gaps = 4/260 (1%)
Query: 1294 KEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTMKPFCHAPYE 1353
KEEFK++K+L+IFYQAG S+ G+P+FYY+ARR+KT + N DLLIYHV+LT+KP+ PYE
Sbjct: 1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYE 60
Query: 1354 LVIDFTHASSENRFKTEFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPI 1413
+V+D TH NRFKT+FL KWF V AY N+ A YIYNCNSWVREYTKYHE++L +
Sbjct: 61 IVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGL 120
Query: 1414 FRNNKKLIFLDSPSKLNDYIDHNQQKLPGATLALDEDLKVFNNGLKLSHKDTKVAIKVGP 1473
+ +K+L+F+D P KL ++I+H QQKLP ATLAL+EDLKVF+N LKL+HKDTKV+IKVG
Sbjct: 121 -KGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLKVFHNALKLAHKDTKVSIKVGS 179
Query: 1474 TAVQITSLEKTKVLSHSVLLNDIYYAHEIEEVCLVDDNQFTLSFVKDSQTQVLSFIHNEC 1533
TAVQ+TS E+ VL SV LNDIYYA EIEE+CLVD+NQFTL+ +Q L+F+H EC
Sbjct: 180 TAVQVTSAER-TVLGQSVFLNDIYYASEIEEICLVDENQFTLTI--ANQGTPLTFMHQEC 236
Query: 1534 DSIVQAIIHIRNRWELSQSD 1553
++IVQ+IIHIR RWELSQ D
Sbjct: 237 EAIVQSIIHIRTRWELSQPD 256
Score = 62.7 bits (152), Expect = 1e-10
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 22/152 (14%)
Query: 652 KEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTM-------YV 704
KEEFK++K+L+IFYQAG S+ G+P+FYY+ARR+KT + N DLLIYHV+LT+ Y
Sbjct: 1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYE 60
Query: 705 RHIDMTVHAVHIK-----TKLYVRHID-------MTVHAVHIKTKLCNLIEAMMRRRDDL 752
+D+T + + V+ + + + + R L
Sbjct: 61 IVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGL 120
Query: 753 AFRREMSFRNKLVDYLMDWVLGSANQVTIPPT 784
+ + F + L + + Q +P
Sbjct: 121 KGSKRLVFIDCPGK-LAEHI--EHEQQKLPAA 149
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain,
phosphatidylethanolamin binding, lipid binding, lipid
bindi protein; HET: PEV; 2.52A {Homo sapiens}
Length = 290
Score = 266 bits (681), Expect = 1e-80
Identities = 175/291 (60%), Positives = 221/291 (75%), Gaps = 17/291 (5%)
Query: 1277 MSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLL 1336
M ++ FEE M + + EKEEFK++K+L+IFYQAG S+ G+P+FYY+ARR+KT + N DLL
Sbjct: 3 MGSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLL 62
Query: 1337 IYHVILTMKPFCHAPYELVIDFTHASSENRFKTEFLQKWFYVLSEVAYANIHAAYIYNCN 1396
IYHV+LT+KP+ PYE+V+D TH NRFKT+FL KWF V AY N+ A YIYNCN
Sbjct: 63 IYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCN 122
Query: 1397 SWVREYTKYHEKILLPIFRNNKKLIFLDSPSKLNDYI--------------DHNQQKLPG 1442
SWVREYTKYHE++L + + +K+L+F+D P KL ++I H QQKLP
Sbjct: 123 SWVREYTKYHERLLTGL-KGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALGHEQQKLPA 181
Query: 1443 ATLALDEDLKVFNNGLKLSHKDTKVAIKVGPTAVQITSLEKTKVLSHSVLLNDIYYAHEI 1502
ATLAL+EDLKVF+N LKL+HKDTKV+IKVG TAVQ+TS E+TKVL SV LNDIYYA EI
Sbjct: 182 ATLALEEDLKVFHNALKLAHKDTKVSIKVGSTAVQVTSAERTKVLGQSVFLNDIYYASEI 241
Query: 1503 EEVCLVDDNQFTLSFVKDSQTQVLSFIHNECDSIVQAIIHIRNRWELSQSD 1553
EE+CLVD+NQFTL+ +Q L+F+H EC++IVQ+IIHIR RWELSQ D
Sbjct: 242 EEICLVDENQFTLTI--ANQGTPLTFMHQECEAIVQSIIHIRTRWELSQPD 290
Score = 70.1 bits (171), Expect = 8e-13
Identities = 40/68 (58%), Positives = 56/68 (82%)
Query: 635 MSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLL 694
M ++ FEE M + + EKEEFK++K+L+IFYQAG S+ G+P+FYY+ARR+KT + N DLL
Sbjct: 3 MGSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLL 62
Query: 695 IYHVILTM 702
IYHV+LT+
Sbjct: 63 IYHVLLTL 70
Score = 40.4 bits (94), Expect = 0.004
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 1614 MSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGK 1648
M ++ FEE M + + EKEEFK++K+L+IFYQAG
Sbjct: 3 MGSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGT 37
>1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth
regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2
PDB: 1wq1_G*
Length = 334
Score = 262 bits (670), Expect = 2e-78
Identities = 83/341 (24%), Positives = 168/341 (49%), Gaps = 13/341 (3%)
Query: 283 ETVL-ADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPL 341
E ++ + + E +L+ + EL + AL++V LA + + +F + + L
Sbjct: 2 EKIMPEEEYSEFKELIL----QKELHVVYALSHVCG-QDRTLLASILLRIFLHEKLESLL 56
Query: 342 LWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAF 401
L + RE+ + D TLFR +L S LM K ++ + L+ I +++ + +
Sbjct: 57 LCTLNDREISMEDEATTLFRATTLASTLMEQYMKATATQFVHHALKDSILKIME-SKQSC 115
Query: 402 EVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQ 461
E+ P++L+ +E++ N L++ ++ + I +++ PP LR + CL + + ++P
Sbjct: 116 ELSPSKLEKNEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTN 175
Query: 462 PQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS- 520
V +FLR I PAI+ P+ II+ + P R L+L++K +QN+AN VEF
Sbjct: 176 TTMRTRVVSGFVFLRLICPAILNPRMFNIISDSPSPIAARTLILVAKSVQNLANLVEFGA 235
Query: 521 KEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQE 580
KE +M N F++++ F ++ + D HS + +S ++ ALH + H +
Sbjct: 236 KEPYMEGVNPFIKSNKHRMIMFLDELGNVPELPDTTEHSRTDLS-RDLAALHEICVAHSD 294
Query: 581 KIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEHKPVESH 621
++ LS+ R + + K+ + L +++ +++
Sbjct: 295 EL-RTLSNERGAQ---QHVLKKLLAITELLQQKQNQYTKTN 331
Score = 262 bits (670), Expect = 2e-78
Identities = 83/341 (24%), Positives = 168/341 (49%), Gaps = 13/341 (3%)
Query: 925 ETVL-ADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPL 983
E ++ + + E +L+ + EL + AL++V LA + + +F + + L
Sbjct: 2 EKIMPEEEYSEFKELIL----QKELHVVYALSHVCG-QDRTLLASILLRIFLHEKLESLL 56
Query: 984 LWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAF 1043
L + RE+ + D TLFR +L S LM K ++ + L+ I +++ + +
Sbjct: 57 LCTLNDREISMEDEATTLFRATTLASTLMEQYMKATATQFVHHALKDSILKIME-SKQSC 115
Query: 1044 EVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQ 1103
E+ P++L+ +E++ N L++ ++ + I +++ PP LR + CL + + ++P
Sbjct: 116 ELSPSKLEKNEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTN 175
Query: 1104 PQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFS- 1162
V +FLR I PAI+ P+ II+ + P R L+L++K +QN+AN VEF
Sbjct: 176 TTMRTRVVSGFVFLRLICPAILNPRMFNIISDSPSPIAARTLILVAKSVQNLANLVEFGA 235
Query: 1163 KEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQE 1222
KE +M N F++++ F ++ + D HS + +S ++ ALH + H +
Sbjct: 236 KEPYMEGVNPFIKSNKHRMIMFLDELGNVPELPDTTEHSRTDLS-RDLAALHEICVAHSD 294
Query: 1223 KIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEHKPVESH 1263
++ LS+ R + + K+ + L +++ +++
Sbjct: 295 EL-RTLSNERGAQ---QHVLKKLLAITELLQQKQNQYTKTN 331
>3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, membrane protein; 2.20A {Homo sapiens}
Length = 387
Score = 214 bits (545), Expect = 4e-61
Identities = 79/395 (20%), Positives = 155/395 (39%), Gaps = 75/395 (18%)
Query: 288 DRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFD------AKHMLPPL 341
+ ++ L L L ++ L A + + + V TL++ +++L L
Sbjct: 12 EAYQHLFYL--LQTNPTYL--AKLIFQMPQNKSTKFMDSVIFTLYNYASNQREEYLLLRL 67
Query: 342 LWNMFYREVEVS-DCMQTLFRGNSLGSKLM-AFCFKIYGASYLQNLLEPLISPLLDKAHV 399
E++ D +Q + GN K++ +F G + L+ +L P++ ++D +
Sbjct: 68 FKTALQEEIKSKVDQIQEIVTGNPTVIKMVVSFNRGARGQNALRQILAPVVKEIMDDKSL 127
Query: 400 AFEVDPARL-------------------------------DPSENIENNRRELISWTKKV 428
+ DP + + ++++ R + + T K
Sbjct: 128 NIKTDPVDIYKSWVNQMESQTGEASKLPYDVTPEQALAHEEVKTRLDSSIRNMRAVTDKF 187
Query: 429 FDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNI-GAVGTVIFLRFINPAIVTPQE 487
AI+ S D P +R + L L ++FP ++ + +G +++ R++NPAIV P
Sbjct: 188 LSAIVSSVDKIPYGMRFIAKVLKDSLHEKFPDAGEDELLKIIGNLLYYRYMNPAIVAPDA 247
Query: 488 MGIINKT----VPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIARQF 542
II+ + + +R L ++K+LQ+ A++ F AH+ N++L + R+F
Sbjct: 248 FDIIDLSAGGQLTTDQRRNLGSIAKMLQHAASNKMFLGDNAHLSIINEYLSQSYQKFRRF 307
Query: 543 FIQIASDCVTED-----------AGAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRD 591
F +D + +IS ++ H LL +HQ+ I
Sbjct: 308 FQTACDVPELQDKFNVDEYSDLVTLTKPVIYISIGEIINTHTLLLDHQDAI--------- 358
Query: 592 HKVVGRRPFDKMATLLAYLGPPEHKPVESHMFFSS 626
D + LL LG +ES + SS
Sbjct: 359 ----APEHNDPIHELLDDLGEV--PTIESLIGESS 387
Score = 214 bits (545), Expect = 4e-61
Identities = 79/395 (20%), Positives = 155/395 (39%), Gaps = 75/395 (18%)
Query: 930 DRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFD------AKHMLPPL 983
+ ++ L L L ++ L A + + + V TL++ +++L L
Sbjct: 12 EAYQHLFYL--LQTNPTYL--AKLIFQMPQNKSTKFMDSVIFTLYNYASNQREEYLLLRL 67
Query: 984 LWNMFYREVEVS-DCMQTLFRGNSLGSKLM-AFCFKIYGASYLQNLLEPLISPLLDKAHV 1041
E++ D +Q + GN K++ +F G + L+ +L P++ ++D +
Sbjct: 68 FKTALQEEIKSKVDQIQEIVTGNPTVIKMVVSFNRGARGQNALRQILAPVVKEIMDDKSL 127
Query: 1042 AFEVDPARL-------------------------------DPSENIENNRRELISWTKKV 1070
+ DP + + ++++ R + + T K
Sbjct: 128 NIKTDPVDIYKSWVNQMESQTGEASKLPYDVTPEQALAHEEVKTRLDSSIRNMRAVTDKF 187
Query: 1071 FDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNI-GAVGTVIFLRFINPAIVTPQE 1129
AI+ S D P +R + L L ++FP ++ + +G +++ R++NPAIV P
Sbjct: 188 LSAIVSSVDKIPYGMRFIAKVLKDSLHEKFPDAGEDELLKIIGNLLYYRYMNPAIVAPDA 247
Query: 1130 MGIINKT----VPPPVKRGLMLMSKILQNIANHVEFS-KEAHMIPFNDFLRAHFVIARQF 1184
II+ + + +R L ++K+LQ+ A++ F AH+ N++L + R+F
Sbjct: 248 FDIIDLSAGGQLTTDQRRNLGSIAKMLQHAASNKMFLGDNAHLSIINEYLSQSYQKFRRF 307
Query: 1185 FIQIASDCVTED-----------AGAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRD 1233
F +D + +IS ++ H LL +HQ+ I
Sbjct: 308 FQTACDVPELQDKFNVDEYSDLVTLTKPVIYISIGEIINTHTLLLDHQDAI--------- 358
Query: 1234 HKVVGRRPFDKMATLLAYLGPPEHKPVESHMFFSS 1268
D + LL LG +ES + SS
Sbjct: 359 ----APEHNDPIHELLDDLGEV--PTIESLIGESS 387
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 217 bits (552), Expect = 5e-61
Identities = 63/315 (20%), Positives = 127/315 (40%), Gaps = 10/315 (3%)
Query: 279 NTLAETVLADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHML 338
+ + ++E + VT + L ++ +E+A V + +
Sbjct: 155 YQTMSILPMELYKEFAEYVT----NHYRMLCAVLEPALNVKGKEEVASALVHILQSTGKA 210
Query: 339 PPLLWNMFYREV-EVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKA 397
L +M EV + +FR N+L +K + ++ G YL++ + I L +
Sbjct: 211 KDFLSDMAMSEVDRFMEREHLIFRENTLATKAIEEYMRLIGQKYLKDAIGEFIRALYES- 269
Query: 398 HVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKR 457
EVDP + S E+ L + +++S FP +L+ + ++R
Sbjct: 270 EENCEVDPIKCTASSLAEHQAN-LRMCCELALCKVVNSHCVFPRELKEVFASWRLRCAER 328
Query: 458 FPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHV 517
+ +FLRF+ PAI++P G++ + R L L++K++QN+AN
Sbjct: 329 GR--EDIADRLISASLFLRFLCPAIMSPSLFGLMQEYPDEQTSRTLTLIAKVIQNLANFS 386
Query: 518 EFS-KEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLY 576
+F+ KE + N+FL + +QF +I++ ++ + + LH LL+
Sbjct: 387 KFTSKEDFLGFMNEFLELEWGSMQQFLYEISNLDTLTNSSSFEGYIDLGRELSTLHALLW 446
Query: 577 NHQEKIGDYLSSSRD 591
++
Sbjct: 447 EVLPQLSKEALLKLG 461
Score = 217 bits (552), Expect = 5e-61
Identities = 63/315 (20%), Positives = 127/315 (40%), Gaps = 10/315 (3%)
Query: 921 NTLAETVLADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHML 980
+ + ++E + VT + L ++ +E+A V + +
Sbjct: 155 YQTMSILPMELYKEFAEYVT----NHYRMLCAVLEPALNVKGKEEVASALVHILQSTGKA 210
Query: 981 PPLLWNMFYREV-EVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKA 1039
L +M EV + +FR N+L +K + ++ G YL++ + I L +
Sbjct: 211 KDFLSDMAMSEVDRFMEREHLIFRENTLATKAIEEYMRLIGQKYLKDAIGEFIRALYES- 269
Query: 1040 HVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKR 1099
EVDP + S E+ L + +++S FP +L+ + ++R
Sbjct: 270 EENCEVDPIKCTASSLAEHQAN-LRMCCELALCKVVNSHCVFPRELKEVFASWRLRCAER 328
Query: 1100 FPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHV 1159
+ +FLRF+ PAI++P G++ + R L L++K++QN+AN
Sbjct: 329 GR--EDIADRLISASLFLRFLCPAIMSPSLFGLMQEYPDEQTSRTLTLIAKVIQNLANFS 386
Query: 1160 EFS-KEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLY 1218
+F+ KE + N+FL + +QF +I++ ++ + + LH LL+
Sbjct: 387 KFTSKEDFLGFMNEFLELEWGSMQQFLYEISNLDTLTNSSSFEGYIDLGRELSTLHALLW 446
Query: 1219 NHQEKIGDYLSSSRD 1233
++
Sbjct: 447 EVLPQLSKEALLKLG 461
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 91.6 bits (227), Expect = 2e-18
Identities = 98/625 (15%), Positives = 170/625 (27%), Gaps = 232/625 (37%)
Query: 186 SSLFLKYFTL---FMNLLNDCTDSQELDKEASRDRSKNDSSSNLRSSIIEAMSNLLSANI 242
++ F L F +L + T+ D E ++ E L
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEP--------------TTPAE-----LVGKF 64
Query: 243 DSGLMHSIALGY---RQDLQTRAAFMEVLTKILQ-------QGTEFNTLAETVLADRFEE 292
LGY + F +VL L +G + + LA +L +
Sbjct: 65 ---------LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 293 LVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEV 352
LVK LI + + A+ M + +
Sbjct: 116 LVKTKELI-------------------------KNY---ITARIMA-----KRPFDKKSN 142
Query: 353 SDCMQTLFRGNSLGS-KLMAFCFKIYG-----ASYLQNLLE------PLISPLLDKAHVA 400
S LFR G+ +L+A I+G Y + L + L+ L+ +
Sbjct: 143 S----ALFRAVGEGNAQLVA----IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 401 FEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPL 460
+E + ++ W +++ N P + + S PL
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEW--------LENPSNTPDKDY-LLSIPI---S--CPL 240
Query: 461 QPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNI--ANHVE 518
IG + ++ TP E+ +G + Q + A +
Sbjct: 241 -----IGVIQLAHYVVTAKLLGFTPGELR--------SYLKGA---TGHSQGLVTAVAIA 284
Query: 519 FSKEAHMIPFNDFLR-AHFVIARQFFI---------------QIASDCVTEDAGAHS-MS 561
+ F I FFI I D + + G S M
Sbjct: 285 ETDSW-----ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 562 FISDTNVLALHRLL--YNHQ----EKIGDYLSSSRDHKVV-G------------------ 596
IS+ + + N +++ L + + VV G
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 597 ------RRPFDKMATLLAYLGPPEHKPVESHMF------F-SSYARWSSIDMSNNNFEEL 643
R PF + K S+ F F S + + +L
Sbjct: 400 SGLDQSRIPFSER------------KLKFSNRFLPVASPFHSHL-------LVPAS--DL 438
Query: 644 MMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTMY 703
+ K ++ F + K + I PV Y TF +DL + ++
Sbjct: 439 INKDLVKNNVSFNA-KDIQI-----------PV-------YDTF-DGSDLRVLSGSISE- 477
Query: 704 VRHIDM-TVHAVH--IKTKLYVRHI 725
R +D V T+ HI
Sbjct: 478 -RIVDCIIRLPVKWETTTQFKATHI 501
Score = 87.4 bits (216), Expect = 3e-17
Identities = 97/627 (15%), Positives = 168/627 (26%), Gaps = 242/627 (38%)
Query: 828 SSLFLKYFTL---FMNLLNDCTDSQELDKEASRDRSKNDSSSNLRSSIIEAMSNLLSANI 884
++ F L F +L + T+ D E + + E L
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPT--------------TPAE-----LVGKF 64
Query: 885 DSGLMHSIALGY--HQ-DLQTRAAFMEVLTKILQ-------QGTEFNTLAETVLADRFEE 934
LGY + F +VL L +G + + LA +L +
Sbjct: 65 ---------LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 935 LVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEV 994
LVK LI + + A+ M + +
Sbjct: 116 LVKTKELI-------------------------KNY---ITARIMA-----KRPFDKKSN 142
Query: 995 SDCMQTLFRGNSLGS-KLMAFCFKIYG-----ASYLQNLLE------PLISPLLDKAHVA 1042
S LFR G+ +L+A I+G Y + L + L+ L+ +
Sbjct: 143 S----ALFRAVGEGNAQLVA----IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 1043 FEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPL 1102
+E + ++ W +++ N P + + S PL
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEW--------LENPSNTPDKDY-LLSIPI---S--CPL 240
Query: 1103 QPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNI--ANHVE 1160
IG + ++ TP E+ +G + Q + A +
Sbjct: 241 -----IGVIQLAHYVVTAKLLGFTPGELR--------SYLKGA---TGHSQGLVTAVAIA 284
Query: 1161 FSKEAHMIPFNDFLR-AHFVIARQFFI---------------QIASDCVTEDAGAHS-MS 1203
+ F I FFI I D + + G S M
Sbjct: 285 ETDSW-----ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 1204 FISDTNVLALHRLL--YNHQ----EKIGDYLSSSRDHKVV-G------------------ 1238
IS+ + + N +++ L + + VV G
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 1239 ------RRPFDKMATLLAYLGPPEHKPVESHMF------F-SSYARWSSIDMSNNNFEEL 1285
R PF + K S+ F F S + + +L
Sbjct: 400 SGLDQSRIPFSER------------KLKFSNRFLPVASPFHSHL-------LVPAS--DL 438
Query: 1286 MMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADL---------L 1336
+ K ++ F + K + I PV Y TF +DL
Sbjct: 439 INKDLVKNNVSFNA-KDIQI-----------PV-------YDTF-DGSDLRVLSGSISER 478
Query: 1337 IYHVILTMKPF-----CHAPYELVIDF 1358
I I+ + P ++DF
Sbjct: 479 IVDCIIRL-PVKWETTTQFKATHILDF 504
Score = 75.9 bits (186), Expect = 1e-13
Identities = 88/581 (15%), Positives = 173/581 (29%), Gaps = 209/581 (35%)
Query: 1157 NH--VEFSKEAHMIPFNDFLRAHFVIARQFFIQI---ASDCVTEDAGAHS--------MS 1203
+H +E ++P F A ++ F +I ++ D + +
Sbjct: 12 SHGSLEHV---LLVPTASFFIAS--QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 1204 FISD----------TNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLL---- 1249
++S VL L E YL + H + + + TL+
Sbjct: 67 YVSSLVEPSKVGQFDQVL---NLCLTEFEN--CYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 1250 ---AY------LGPPEHKPVESHMFFSSYARWSSIDMS------NNN--FEELMMKRNMQ 1292
Y P K S +F + + + ++ N + FEEL R++
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-VAIFGGQGNTDDYFEEL---RDLY 177
Query: 1293 E-----------------KEEFKSIKSLNIFYQAG-------KSRNGHPVFYYIARRYKT 1328
+ E ++ + G ++ + P Y+ +
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 1329 FETNADLLIYHVILTMKPFCHAPYEL---VIDFTHASSENRFKTEFLQKWFYVLSEVAYA 1385
++ + H Y + ++ FT + K + +
Sbjct: 238 C----------PLIGVIQLAH--YVVTAKLLGFTPGELRSYLKG---------ATGHSQG 276
Query: 1386 NIHAAYIYNCNSWVREYTKYHE--KILLPI-------FRNNKKLIFLDSPSKLNDYIDHN 1436
+ A I +SW + + +L I + N L PS L D +++N
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN----TSL-PPSILEDSLENN 331
Query: 1437 QQKLPGATLA--------LDEDLKVFNNGLKLSHKDTKVAIKV--GPTAVQIT------- 1479
+ +P L+ + + + N+ L +V I + G + ++
Sbjct: 332 E-GVPSPMLSISNLTQEQVQDYVNKTNSHLP---AGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 1480 ----SLEKTKVLS---------------------------HSVLLNDIYYAHEIEEVCLV 1508
+L K K S HS LL + I + +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP--ASDLINKDLVK 445
Query: 1509 DDNQFT---LSF-VKDSQT----QVLSFIHNECDSIVQAIIHIRNRWELSQSDSLTVHQK 1560
++ F + V D+ +VLS + + IV II + +WE + T H
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLS--GSISERIVDCIIRLPVKWETTTQFKAT-H-- 500
Query: 1561 IRPKDV----PGTLLNMALL---NL----------GSVDPN 1584
+ PG + +L N G++D N
Sbjct: 501 -----ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN 536
Score = 50.4 bits (120), Expect = 6e-06
Identities = 74/481 (15%), Positives = 141/481 (29%), Gaps = 158/481 (32%)
Query: 364 SLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVD----------PARLDP-SE 412
L K + + +S ++ +L+ FE A+L ++
Sbjct: 59 ELVGKFLGYV-----SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 413 NIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAV--- 469
+ELI K A I + F + S L++ + + + A+
Sbjct: 114 TTLVKTKELI---KNYITARIMAKRPFDKKSNSA---LFRAVGEG-----NAQLVAIFGG 162
Query: 470 -GTVI--FLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVE-----FSK 521
G F +E+ + +T V + ++ L + F++
Sbjct: 163 QGNTDDYF-----------EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 522 ---------EAHMIPFNDFLRAHFV----IARQFFIQIASDCVTEDAGAHSMSFISDTNV 568
P D+L + + I IQ+A VT
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLI---GVIQLAHYVVT---------------- 252
Query: 569 LALHRLLYNHQEKIGDYLSSSRDH--KVV---------GRRPF----DKMATLLAYLGPP 613
L + E + YL + H +V F K T+L ++G
Sbjct: 253 --AKLLGFTPGE-LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG-- 307
Query: 614 EHKPVESHMFFSSYARWSSI-DMSNNNFEEL---MMK-RNMQEKEEFKSIKSLNIFYQAG 668
V + + + + SI + S N E + M+ N+ +++ + N AG
Sbjct: 308 ----VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 669 KS---------RN----GHPV----FYYIARRYKTFETNAD-----------------LL 694
K +N G P R+ K + D L
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA-PSGLDQSRIPFSERKLKFSNRFLP 422
Query: 695 I---YH-VILTMYVRHI--DMTVHAVHIKT---KLYVRHI----DMTVHAVHIKTKLCNL 741
+ +H +L I D+ + V ++ V D+ V + I ++ +
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 742 I 742
I
Sbjct: 483 I 483
Score = 46.2 bits (109), Expect = 1e-04
Identities = 78/498 (15%), Positives = 151/498 (30%), Gaps = 154/498 (30%)
Query: 17 YLWSIDIEAIIVSLSCFRLLCEEAEIRCNSEEMGISILLPNYNVYLELAQASTVLTTGRK 76
YL DI A+ L L + + E L+ NY A + R
Sbjct: 95 YLEGNDIHALAAKL----LQENDTTLVKTKE------LIKNY--I----TARIM--AKRP 136
Query: 77 ALQKRIVTLLRKIEHCVNGVLPWSTRKHQKI--------NTLAFRREMSFRNKLVD-Y-- 125
+K L R + + ++ NT + E+ L Y
Sbjct: 137 FDKKSNSALFRAVG-----------EGNAQLVAIFGGQGNTDDYFEELR---DLYQTYHV 182
Query: 126 -LMDWVLGSANQV-TIPPTPGESFVSISRDLDQACMDAVAALLKGLPLQPEESDKGDLME 183
+ D + SA + + T ++ ++ L+ + L+ P DK L+
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLN------ILEWLENPSNTP---DKDYLLS 233
Query: 184 AKSSLFLKYFTLFMNLLNDCTDSQELDKEASRDRSKNDSSSNLRSSIIEAMS----NLLS 239
S L + + + + LR S ++ + L++
Sbjct: 234 IPISCPLIGVIQLAHYVVTA-------------KLLGFTPGELR-SYLKGATGHSQGLVT 279
Query: 240 ANIDSGLMHSIALGYRQDLQTRAAFMEVLTKIL----------QQGTEFNTLAETVLADR 289
A IA + +F + K + + +L ++L D
Sbjct: 280 AVA-------IAET-----DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 290 FEE--------LVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHML--- 338
E L ++ ++ + ++ + N S + +V ++L + L
Sbjct: 328 LENNEGVPSPMLS--ISNLTQE-QVQDYVNKTN----SHLPAGKQVEISLVNGAKNLVVS 380
Query: 339 -PPL-LW--NMFYREVEV-SDCMQT--LFRGNSLGSKLMAFCFKIYGASYLQNLLEPLIS 391
PP L+ N+ R+ + S Q+ F KL + +L + P S
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER----KL------KFSNRFL-PVASPFHS 429
Query: 392 PLLDKA---------HVAFEVDPARLD-PSENIEN--NRREL-ISWTKKVFDAII----- 433
LL A + + P + + + R L S ++++ D II
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 434 -DSADNFPPQLRSMCHCL 450
++ F H L
Sbjct: 490 WETTTQFKAT-----HIL 502
Score = 32.3 bits (73), Expect = 1.9
Identities = 24/173 (13%), Positives = 49/173 (28%), Gaps = 68/173 (39%)
Query: 192 YFTLFMNLLND-CTDSQELDKEASRDRSK---NDSSSNLRS-------------SIIEAM 234
Y + + D ++++ KE + + L + + E +
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 235 SNLLSANIDS---GLMHSI----ALGYRQDLQTRAAFMEVLTKILQQGTEFNTLAETVLA 287
+ D+ G HS+ AL A+ +V++
Sbjct: 1748 KSKGLIPADATFAG--HSLGEYAAL---------ASLADVMS------------------ 1778
Query: 288 DRFEELVKLVTL----------ISDKGELSIAMALAN---VVSTSQMDELARV 327
E LV++V + G + M N V ++ + L V
Sbjct: 1779 --IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Score = 32.3 bits (73), Expect = 1.9
Identities = 24/173 (13%), Positives = 49/173 (28%), Gaps = 68/173 (39%)
Query: 834 YFTLFMNLLND-CTDSQELDKEASRDRSK---NDSSSNLRS-------------SIIEAM 876
Y + + D ++++ KE + + L + + E +
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 877 SNLLSANIDS---GLMHSI----ALGYHQDLQTRAAFMEVLTKILQQGTEFNTLAETVLA 929
+ D+ G HS+ AL A+ +V++
Sbjct: 1748 KSKGLIPADATFAG--HSLGEYAAL---------ASLADVMS------------------ 1778
Query: 930 DRFEELVKLVTL----------ISDKGELSIAMALAN---VVSTSQMDELARV 969
E LV++V + G + M N V ++ + L V
Sbjct: 1779 --IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 4e-11
Identities = 85/540 (15%), Positives = 160/540 (29%), Gaps = 162/540 (30%)
Query: 1157 NHVEFSKEAHMIPFNDFLRAHFVIARQFFIQIASDCV-TEDAGAHSMS-------FISDT 1208
+H++F H + D L F F+ DC +D +S +S
Sbjct: 5 HHMDFETGEHQYQYKDILS-VF---EDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 1209 NVLALHRL---LYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEHKPVESHMF 1265
V RL L + QE++ R + + + + + + M+
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVL-----RINYKFLMSPIKT--EQRQPSMMTRMY 112
Query: 1266 FSSYARWSSIDMSNNNFEELMMKRNMQEKEEFKSIK--------SLNIFYQ----AGKS- 1312
R + N+N ++ K N+ + + ++ + N+ +GK+
Sbjct: 113 IEQRDR-----LYNDN--QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 1313 -------------RNGHPVFYYIARRYKTFETNADLL--IYHVILTMKPFCHAPYELVID 1357
+ +F+ + + ET ++L + + I +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNI 223
Query: 1358 FTHASSENRFKTEFLQKWFY-----VLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLP 1412
S L+ Y VL V A A+ +C KILL
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC------------KILL- 270
Query: 1413 IFRNNKKLIFLDSPSKLNDYIDHNQQKLPGATLALDEDLKVFNNGLKLSHKDTKVAIKVG 1472
R + FL + + + +DH+ TL DE + L +D
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSM-----TLTPDEVKSLLLKYLDCRPQD-------- 317
Query: 1473 PTAVQITSLEKTKVLSHSVLLNDIYYAHEIEEVCLVDDNQFTLSFVKDSQTQVLSFIHNE 1532
L EV N LS + +S I +
Sbjct: 318 --------------LP--------------REVLTT--NPRRLSIIAES-------IRDG 340
Query: 1533 CDSIVQAIIHIRNRWELSQSDSLTVHQKIRPKDVPGTLLNMALLNLGSVDPNLRTAAYNL 1592
+ + W+ D LT T++ +L L +P ++
Sbjct: 341 LATW--------DNWKHVNCDKLT------------TIIESSLNVL---EPAEYRKMFDR 377
Query: 1593 LCALTATF--DLKIEGQLLET--SDMSNNNFEELM---MKRNMQEKEEFKSIKSLNIFYQ 1645
L + F I LL D+ ++ ++ K ++ EK+ +S S+ Y
Sbjct: 378 L----SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Score = 61.0 bits (147), Expect = 4e-09
Identities = 98/675 (14%), Positives = 189/675 (28%), Gaps = 225/675 (33%)
Query: 787 ESFVSISRDLDQACMDAVAALLKGLPLQPEESDKGDLMEAKSSLFLKYFTLFMNLLNDCT 846
++FV + D C D V + K + L EE D ++ +K ++ LF LL
Sbjct: 27 DAFV---DNFD--CKD-VQDMPKSI-LSKEEID--HIIMSKDAVSGTLR-LFWTLL---- 72
Query: 847 DSQELDKEASRDRSKNDSSSNLRSSIIEAMSNLLSANIDSGLMHSIALGYHQDLQTRAAF 906
QE + + + +L N LM I Q +
Sbjct: 73 SKQE-------------------EMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMY 112
Query: 907 MEVLTKILQQGTEFNTLAETVLADRFEELVKLVT-LISDKGELSIA---MA------LAN 956
+E ++ F V R + +KL L+ + ++ + +A
Sbjct: 113 IEQRDRLYNDNQVFAKY--NV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 957 VVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCF 1016
V S + F +F+ + + +C NS + L
Sbjct: 169 DVCLSYKVQCKMDF---------------KIFW--LNLKNC-------NSPETVLEM--- 201
Query: 1017 KIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENI-------ENNRRELIS---- 1065
LQ LL + +R D S NI + R L+
Sbjct: 202 -------LQKLLYQIDPNWT-----------SRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 1066 ----------WTKKVFDA---------------IIDSADNFPPQLRSMCHCLYQVLSKRF 1100
K ++A + D S+ H
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH-------HSM 296
Query: 1101 PLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGL-MLMSKI---LQNIA 1156
L P + L++++ PQ++ P V +S I +++
Sbjct: 297 TLTPDEVKS-----LLLKYLD---CRPQDL-------PREVLTTNPRRLSIIAESIRDGL 341
Query: 1157 N------HVEFSKEAHMI--------PFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSM 1202
HV K +I P R F + +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEP--AEYRKMF---DRLSV---------------- 380
Query: 1203 SFISDTN----VLAL--HRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATL----LAYL 1252
F + +L+L ++ + + + L +V ++P + ++ L
Sbjct: 381 -FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS---LVEKQPKESTISIPSIYLELK 436
Query: 1253 GPPE-----HKP-VESHMFFSSYARWSSIDMSNNN--FEEL---MMKRNMQEK-EEFKSI 1300
E H+ V+ + ++ I + + + + E+ F+ +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 1301 KSLNI-FYQAGKSRNGHPVFYYIARRYKTFETNADLLIY--HVILTMKPFCHAPYELVID 1357
L+ F + K R+ + T L Y + I P ++D
Sbjct: 497 -FLDFRFLEQ-KIRHDSTAWNASGSILNTL---QQLKFYKPY-ICDNDPKYERLVNAILD 550
Query: 1358 FTHASSENRFKTEFL 1372
F EN +++
Sbjct: 551 FLPKIEENLICSKYT 565
Score = 59.9 bits (144), Expect = 8e-09
Identities = 101/709 (14%), Positives = 204/709 (28%), Gaps = 242/709 (34%)
Query: 145 ESFVSISRDLDQACMDAVAALLKGLPLQPEESDKGDLMEAKSSLFLKYFTLFMNLLNDCT 204
++FV + D C D V + K + L EE D ++ +K ++ LF LL
Sbjct: 27 DAFV---DNFD--CKD-VQDMPKSI-LSKEEID--HIIMSKDAVSGTLR-LFWTLL---- 72
Query: 205 DSQELDKEASRDRSKNDSSSNLRSSIIEAMSNLLSANIDSGLMHSIALGYRQDLQTRAAF 264
QE + + + +L N LM I RQ +
Sbjct: 73 SKQE-------------------EMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMY 112
Query: 265 MEVLTKILQQGTEFNTLAETVLADRFEELVKLVT-LISDKGELSIA---MA------LAN 314
+E ++ F V R + +KL L+ + ++ + +A
Sbjct: 113 IEQRDRLYNDNQVFAKY--NV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 315 VVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCF 374
V S + F +F+ + + +C NS + L
Sbjct: 169 DVCLSYKVQCKMDF---------------KIFW--LNLKNC-------NSPETVLEM--- 201
Query: 375 KIYGASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENI-------ENNRRELIS---- 423
LQ LL + +R D S NI + R L+
Sbjct: 202 -------LQKLLYQIDPNWT-----------SRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 424 ----------WTKKVFDA---------------IIDSADNFPPQLRSMCHCLYQVLSKRF 458
K ++A + D S+ H
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH-------HSM 296
Query: 459 PLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGL-MLMSKI---LQNIA 514
L P + L++++ PQ++ P V +S I +++
Sbjct: 297 TLTPDEVKS-----LLLKYLD---CRPQDL-------PREVLTTNPRRLSIIAESIRDGL 341
Query: 515 N------HVEFSKEAHMI--------PFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSM 560
HV K +I P R F + +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEP--AEYRKMF---DRLSV---------------- 380
Query: 561 SFISDTN----VLAL--HRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATL----LAYL 610
F + +L+L ++ + + + L +V ++P + ++ L
Sbjct: 381 -FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS---LVEKQPKESTISIPSIYLELK 436
Query: 611 GPPE-----HKP-VESHMFFSSYARWSSIDMSNNN--FEEL---MMKRNMQEK-EEFKSI 658
E H+ V+ + ++ I + + + + E+ F+ +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 659 KSLNIFYQAGKSRNGHPVFYYIAR--RYKTFETNADLLIYHVI--LTMYVRHIDMTVHAV 714
L+ F ++ + R+ + NA I + + L Y +I +
Sbjct: 497 -FLD--------------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI--CDNDP 539
Query: 715 HIKTKLY-VRHIDMTVHAVHIKTKLCNLIE-AMMRRRDDLAFRREMSFR 761
+ + + + I +K +L+ A+M + + E + +
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF---EEAHK 585
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 34.5 bits (79), Expect = 0.33
Identities = 27/213 (12%), Positives = 61/213 (28%), Gaps = 33/213 (15%)
Query: 1246 ATLLAYLGPPEHKPVESHMFFSSYARWSSIDMSNNNFEELMMKRNMQEKEEFKSIKSLNI 1305
LL +L +S + + + + ++ + Q E + + L+
Sbjct: 36 YFLLRWLRARSFDLQKSEAMLRKHVEF----RKQKDIDNII---SWQPPEVIQ--QYLSG 86
Query: 1306 FYQAGKSRNGHPVFYYIARRYKTFE-----TNADLLIYHV------ILTMKPFCHAPYE- 1353
G +G PV+Y I + DLL + +
Sbjct: 87 GMC-GYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRK 145
Query: 1354 -----LVIDFTHASSEN--RFKTEFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYH 1406
++ D ++ + E ++ + E + ++
Sbjct: 146 VETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLI 205
Query: 1407 EKILLPIFRNNKKLIFL--DSPSKLNDYIDHNQ 1437
+ L R KK++ L + L +I +Q
Sbjct: 206 KPFLSEDTR--KKIMVLGANWKEVLLKHISPDQ 236
Score = 31.1 bits (70), Expect = 2.9
Identities = 17/128 (13%), Positives = 40/128 (31%), Gaps = 15/128 (11%)
Query: 604 ATLLAYLGPPEHKPVESHMFFSSYARWSSIDMSNNNFEELMMKRNMQEKEEFKSIKSLNI 663
LL +L +S + + + + ++ + Q E + + L+
Sbjct: 36 YFLLRWLRARSFDLQKSEAMLRKHVEF----RKQKDIDNII---SWQPPEVIQ--QYLSG 86
Query: 664 FYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHV--ILTMYVRHIDMTVHAVHIKTKLY 721
G +G PV+Y + L +L +R ++ + +T
Sbjct: 87 GMC-GYDLDGCPVWYD---IIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKL 142
Query: 722 VRHIDMTV 729
R ++
Sbjct: 143 GRKVETIT 150
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.5 bits (79), Expect = 0.37
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 14/79 (17%)
Query: 1402 YTKYHEKILLPIFRNNKKLIFLDSPSKLNDYIDHNQQKLPGATLALDEDLKVFN------ 1455
KY IL I L P N Y ++ + + ++EDL+ F
Sbjct: 891 KAKYETSIL------EHSGIRLIEPELFNGYNPEKKEMI--QEVIVEEDLEPFEASKETA 942
Query: 1456 NGLKLSHKDTKVAIKVGPT 1474
K H D ++ T
Sbjct: 943 EQFKHQHGDKVDIFEIPET 961
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids,
oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1
b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A
1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A*
1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ...
Length = 839
Score = 34.4 bits (78), Expect = 0.43
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 1364 ENRFKTEFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFL 1423
+N + EF K + + I + CNSWV Y IF N +
Sbjct: 100 KNYMQVEFFLKSLTLEAISNQGTIR----FVCNSWVYNTKLYKSVR---IFFANHTYVPS 152
Query: 1424 DSPSKLNDYIDHNQQKLPG 1442
++P+ L Y + + L G
Sbjct: 153 ETPAPLVSYREEELKSLRG 171
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean
lipoxygenase-B, fatty acid biosynthesis, lipid synthesis;
2.4A {Glycine max}
Length = 853
Score = 34.1 bits (77), Expect = 0.49
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 1364 ENRFKTEFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFL 1423
+N + EF K + + IH + CNSWV Y IF N +
Sbjct: 114 KNYMQNEFYLKSLILEDIPNHGTIH----FICNSWVYNSKHYKTDR---IFFANNTYLPS 166
Query: 1424 DSPSKLNDYIDHNQQKLPG 1442
++P+ L Y + + + G
Sbjct: 167 ETPAPLVKYREEELKNVRG 185
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase,
oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid
biosynthesis; 2.4A {Glycine max}
Length = 864
Score = 33.3 bits (75), Expect = 0.81
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 1364 ENRFKTEFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFL 1423
+N EF + + I + CNSWV + Y + IF N +
Sbjct: 126 KNFMTDEFFLVSVKLEDIPNHGTIE----FVCNSWVYNFRSYKKNR---IFFVNDTYLPS 178
Query: 1424 DSPSKLNDYIDHNQQKLPG 1442
+P+ L Y + L G
Sbjct: 179 ATPAPLLKYRKEEFEVLRG 197
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 31.3 bits (71), Expect = 2.4
Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 58/230 (25%)
Query: 1246 ATLLAYLGPPEHKPVESHMFFSSYARWSSIDMSNNNFEELMMKRNMQEKEEFKSIKSLNI 1305
+TLL +L + + F + +W + + ++ + EK
Sbjct: 53 STLLRFLRARKFDVQLAKEMFENCEKW----RKDYGTDTILQDFHYDEKPLIAKFYPQYY 108
Query: 1306 FYQAGKSRNGHPVFYYIARRYKT-----FETNADLLIYHV------ILTMKPFCHAPYE- 1353
++G PV++ + +L V + P C
Sbjct: 109 H---KTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGH 165
Query: 1354 ------LVIDFTHASSENRFKT-EFLQKWFYVLSEVAYAN----IHAAYIYN-------C 1395
++D S + + ++++ Y+ + YI N
Sbjct: 166 LVETSCTIMDLKGISISSAYSVMSYVREASYISQ----NYYPERMGKFYIINAPFGFSTA 221
Query: 1396 NSWVR----EYTKYHEKILLPIFRNNKKLIFLDSPSKLNDYIDHNQQKLP 1441
+ T KI I ++ + +L I LP
Sbjct: 222 FRLFKPFLDPVTV--SKIF--ILGSSYQ-------KELLKQIPAEN--LP 258
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 2.9
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 1449 EDLKVFNNGLKLSHKDTKVAIKVGPTAVQITSLE 1482
+ LK LKL D+ A+ A++ T +E
Sbjct: 20 QALKKLQASLKLYADDSAPAL-----AIKAT-ME 47
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR
initiative, PSI, midwest center for structural genomics,
UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP:
c.108.1.18
Length = 126
Score = 28.7 bits (64), Expect = 8.1
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 23/77 (29%)
Query: 1298 KSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLI-----------------YHV 1340
I+ L ++Q G + AR +T+E N + Y
Sbjct: 28 DVIEQLREYHQ-----LGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDE 82
Query: 1341 ILTMKPFCHAPYELVID 1357
IL KP+C ID
Sbjct: 83 ILVGKPWCGH-DGFYID 98
>2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A {Perkinsus
marinus}
Length = 226
Score = 29.5 bits (67), Expect = 8.5
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 1388 HAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIF 1422
H Y+ NS E + K L I + F
Sbjct: 62 HQTYVDTLNSIAAENSTIASKTLEQIIKTETGKPF 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.393
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 24,903,411
Number of extensions: 1534127
Number of successful extensions: 3141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3080
Number of HSP's successfully gapped: 51
Length of query: 1648
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1541
Effective length of database: 3,714,246
Effective search space: 5723653086
Effective search space used: 5723653086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.7 bits)