RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14861
(1648 letters)
>d1nf1a_ a.116.1.2 (A:) GAP related domain of neurofibromin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 326 bits (837), Expect = e-101
Identities = 225/327 (68%), Positives = 273/327 (83%), Gaps = 6/327 (1%)
Query: 291 EELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREV 350
E LV+LVT++ D+GEL IAMALANVV SQ DELARV VTLFD++H+L LLWNMF +EV
Sbjct: 1 ERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEV 60
Query: 351 EVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLL---DKAHVAFEVDPAR 407
E++D MQTLFRGNSL SK+M FCFK+YGA+YLQ LL+PL+ ++ D HV+FEVDP R
Sbjct: 61 ELADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLLDPLLRIVITSSDWQHVSFEVDPTR 120
Query: 408 LDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIG 467
L+PSE++E N+R L+ T+K F AII S+ FPPQLRS+CHCLYQV+S+RFP QN+IG
Sbjct: 121 LEPSESLEENQRNLLQMTEKFFHAIISSSSEFPPQLRSVCHCLYQVVSQRFP---QNSIG 177
Query: 468 AVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFSKEAHMIP 527
AVG+ +FLRFINPAIV+P E GI++K PP ++RGL LMSKILQ+IANHV F+KE HM P
Sbjct: 178 AVGSAMFLRFINPAIVSPYEAGILDKKPPPIIERGLKLMSKILQSIANHVLFTKEEHMRP 237
Query: 528 FNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLS 587
FNDF++++F AR+FF+ IASDC T DA HS+SFISD NVLALHRLL+N+QEKIG YLS
Sbjct: 238 FNDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFISDGNVLALHRLLWNNQEKIGQYLS 297
Query: 588 SSRDHKVVGRRPFDKMATLLAYLGPPE 614
S+RDHK VGRRPFDKMATLLAYLGPPE
Sbjct: 298 SNRDHKAVGRRPFDKMATLLAYLGPPE 324
Score = 326 bits (837), Expect = e-101
Identities = 225/327 (68%), Positives = 273/327 (83%), Gaps = 6/327 (1%)
Query: 933 EELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREV 992
E LV+LVT++ D+GEL IAMALANVV SQ DELARV VTLFD++H+L LLWNMF +EV
Sbjct: 1 ERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEV 60
Query: 993 EVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLL---DKAHVAFEVDPAR 1049
E++D MQTLFRGNSL SK+M FCFK+YGA+YLQ LL+PL+ ++ D HV+FEVDP R
Sbjct: 61 ELADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLLDPLLRIVITSSDWQHVSFEVDPTR 120
Query: 1050 LDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIG 1109
L+PSE++E N+R L+ T+K F AII S+ FPPQLRS+CHCLYQV+S+RFP QN+IG
Sbjct: 121 LEPSESLEENQRNLLQMTEKFFHAIISSSSEFPPQLRSVCHCLYQVVSQRFP---QNSIG 177
Query: 1110 AVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFSKEAHMIP 1169
AVG+ +FLRFINPAIV+P E GI++K PP ++RGL LMSKILQ+IANHV F+KE HM P
Sbjct: 178 AVGSAMFLRFINPAIVSPYEAGILDKKPPPIIERGLKLMSKILQSIANHVLFTKEEHMRP 237
Query: 1170 FNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLS 1229
FNDF++++F AR+FF+ IASDC T DA HS+SFISD NVLALHRLL+N+QEKIG YLS
Sbjct: 238 FNDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFISDGNVLALHRLLWNNQEKIGQYLS 297
Query: 1230 SSRDHKVVGRRPFDKMATLLAYLGPPE 1256
S+RDHK VGRRPFDKMATLLAYLGPPE
Sbjct: 298 SNRDHKAVGRRPFDKMATLLAYLGPPE 324
>d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 238 bits (609), Expect = 8e-71
Identities = 80/306 (26%), Positives = 153/306 (50%), Gaps = 9/306 (2%)
Query: 288 DRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFY 347
+ + E +L+ + EL + AL++V LA + + +F + + LL +
Sbjct: 4 EEYSEFKELIL----QKELHVVYALSHVCGQD-RTLLASILLRIFLHEKLESLLLCTLND 58
Query: 348 REVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPAR 407
RE+ + D TLFR +L S LM K ++ + L+ I +++ + E+ P++
Sbjct: 59 REISMEDEATTLFRATTLASTLMEQYMKATATQFVHHALKDSILKIMES-KQSCELSPSK 117
Query: 408 LDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIG 467
L+ +E++ N L++ ++ + I +++ PP LR + CL + + ++P
Sbjct: 118 LEKNEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNTTMRTR 177
Query: 468 AVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF-SKEAHMI 526
V +FLR I PAI+ P+ II+ + P R L+L++K +QN+AN VEF +KE +M
Sbjct: 178 VVSGFVFLRLICPAILNPRMFNIISDSPSPIAARTLILVAKSVQNLANLVEFGAKEPYME 237
Query: 527 PFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYL 586
N F++++ F ++ + D HS + +S ++ ALH + H +++ L
Sbjct: 238 GVNPFIKSNKHRMIMFLDELGNVPELPDTTEHSRTDLS-RDLAALHEICVAHSDEL-RTL 295
Query: 587 SSSRDH 592
S+ R
Sbjct: 296 SNERGA 301
Score = 238 bits (609), Expect = 8e-71
Identities = 80/306 (26%), Positives = 153/306 (50%), Gaps = 9/306 (2%)
Query: 930 DRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFY 989
+ + E +L+ + EL + AL++V LA + + +F + + LL +
Sbjct: 4 EEYSEFKELIL----QKELHVVYALSHVCGQD-RTLLASILLRIFLHEKLESLLLCTLND 58
Query: 990 REVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAHVAFEVDPAR 1049
RE+ + D TLFR +L S LM K ++ + L+ I +++ + E+ P++
Sbjct: 59 REISMEDEATTLFRATTLASTLMEQYMKATATQFVHHALKDSILKIMES-KQSCELSPSK 117
Query: 1050 LDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIG 1109
L+ +E++ N L++ ++ + I +++ PP LR + CL + + ++P
Sbjct: 118 LEKNEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNTTMRTR 177
Query: 1110 AVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF-SKEAHMI 1168
V +FLR I PAI+ P+ II+ + P R L+L++K +QN+AN VEF +KE +M
Sbjct: 178 VVSGFVFLRLICPAILNPRMFNIISDSPSPIAARTLILVAKSVQNLANLVEFGAKEPYME 237
Query: 1169 PFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYL 1228
N F++++ F ++ + D HS + +S ++ ALH + H +++ L
Sbjct: 238 GVNPFIKSNKHRMIMFLDELGNVPELPDTTEHSRTDLS-RDLAALHEICVAHSDEL-RTL 295
Query: 1229 SSSRDH 1234
S+ R
Sbjct: 296 SNERGA 301
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol
transfer protein sec14p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 203
Score = 45.9 bits (108), Expect = 1e-05
Identities = 16/147 (10%), Positives = 42/147 (28%), Gaps = 19/147 (12%)
Query: 1310 GKSRNGHPVFYYIARRYK--------TFETNADLLIYHVILTMKPFCHAPYE-------- 1353
++G PV++ + E L++ ++ A
Sbjct: 17 KTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVET 76
Query: 1354 --LVIDFTHASSENRFK-TEFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKIL 1410
++D S + + ++++ Y+ + YI N + + L
Sbjct: 77 SCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFL 136
Query: 1411 LPIFRNNKKLIFLDSPSKLNDYIDHNQ 1437
P+ + ++ +L I
Sbjct: 137 DPVTVSKIFILGSSYQKELLKQIPAEN 163
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 199
Score = 38.9 bits (90), Expect = 0.002
Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 23/149 (15%)
Query: 1310 GKSRNGHPVFYYIARRYK--------TFETNADLLIYHVILTMKPFCHAPYEL------- 1354
G +G PV+Y I + + + L ++ H +L
Sbjct: 15 GYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETI 74
Query: 1355 --VIDFTHASSEN--RFKTEFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKIL 1410
+ D ++ + E ++ + E + ++ + L
Sbjct: 75 TIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFL 134
Query: 1411 LPIFRNNKKLIFLDSP--SKLNDYIDHNQ 1437
R KK++ L + L +I +Q
Sbjct: 135 SEDTR--KKIMVLGANWKEVLLKHISPDQ 161
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 185
Score = 35.0 bits (80), Expect = 0.042
Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 15/162 (9%)
Query: 1310 GKSRNGHPVFYYIARRYKTFETNADLLIYHVILTMKPFCHAP------YELVIDFTHASS 1363
+ G V Y + A + ++T + + + D
Sbjct: 16 SRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQF 75
Query: 1364 EN--RFKTEFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLI 1421
+ + +K VL++ + ++ N I + K+ I
Sbjct: 76 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFH---AVFSMIKPFLTEKIKERI 132
Query: 1422 FLDSPSKLNDYIDHNQQKLP----GATLALDEDLKVFNNGLK 1459
+ + + H LP G ++++ + + N +
Sbjct: 133 HMHGNNYKQSLLQHFPDILPLEYGGEEFSMEDICQEWTNFIM 174
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 481
Score = 29.4 bits (65), Expect = 3.8
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 808 LKGLPLQPEESDKGDLMEAKSSLFLKYFTLFMNLLNDCTDSQELDKEASRDRSKNDSSSN 867
++ +P + DL+ + TL + L EL K +S N
Sbjct: 196 VEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPN 255
Query: 868 LRSSIIEAMSNLLSANIDSGLMHSIALGYHQDLQTRAAFMEVLTKI---LQQGTEFNTLA 924
L I + L+ + ++ ++L+ R A + + +I Q+ FN +
Sbjct: 256 LLKMI--RHTTNLTLWFEKCIVE------TENLEERVAVVSRIIEILQVFQELNNFNGVL 307
Query: 925 ETVLA 929
E V A
Sbjct: 308 EVVSA 312
Score = 29.0 bits (64), Expect = 5.6
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 166 LKGLPLQPEESDKGDLMEAKSSLFLKYFTLFMNLLNDCTDSQELDKEASRDRSKNDSSSN 225
++ +P + DL+ + TL + L EL K +S N
Sbjct: 196 VEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPN 255
Query: 226 LRSSIIEAMSNLLSANIDSGLMHSIALGYRQDLQTRAAFMEVLTKI---LQQGTEFNTLA 282
L I + L+ + ++ ++L+ R A + + +I Q+ FN +
Sbjct: 256 LLKMI--RHTTNLTLWFEKCIVE------TENLEERVAVVSRIIEILQVFQELNNFNGVL 307
Query: 283 ETVLA 287
E V A
Sbjct: 308 EVVSA 312
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo
sapiens) [TaxId: 9606]}
Length = 173
Score = 28.3 bits (63), Expect = 5.5
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 1346 PFCHAPYELVID--FTHASSENRFKTEFLQKWFYVLSEVAYANIHAAYIYNCNSWVREYT 1403
P ++++D +N +++ +++ +E+ Y IHA YI +
Sbjct: 38 PHYRQALDMILDLEPDEELEDNPNQSDLIEQ----AAEMLYGLIHARYILTNRGIAQMLE 93
Query: 1404 KYHEKI 1409
KY +
Sbjct: 94 KYQQGD 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.393
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,002,457
Number of extensions: 285305
Number of successful extensions: 683
Number of sequences better than 10.0: 1
Number of HSP's gapped: 671
Number of HSP's successfully gapped: 21
Length of query: 1648
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1550
Effective length of database: 1,062,056
Effective search space: 1646186800
Effective search space used: 1646186800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.7 bits)