BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14862
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 82/144 (56%), Gaps = 11/144 (7%)
Query: 79 FKDFVREYERQYDSDSEIERRFDIFRNNLKTIDYYTKHEQGTATYGVNRFADMTDSEFNH 138
F ++ + + Y++ E RF+IF++NL ID T + + G+N FAD+++ EFN
Sbjct: 22 FNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDE-TNKKNNSYWLGLNEFADLSNDEFNE 80
Query: 139 G-LSSLDWEQIENLKSTFETYS--FNSSNSYGLAESINYKDKGKVLPKVQDQHLCGSCWA 195
+ SL IE ++Y F + + L E+++++ KG V P V+ Q CGSCWA
Sbjct: 81 KYVGSLIDATIE------QSYDEEFINEDIVNLPENVDWRKKGAVTP-VRHQGSCGSCWA 133
Query: 196 HSAVACLESAYAIKHNELIELSKQ 219
SAVA +E I+ +L+ELS+Q
Sbjct: 134 FSAVATVEGINKIRTGKLVELSEQ 157
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 78/151 (51%), Gaps = 24/151 (15%)
Query: 79 FKDFVREYERQYDSDSEIERRFDIFRNNLKTIDYYTKHEQGTATYGVNRFADMTDSEF-- 136
F+ ++ ++ + Y + E RF+IF++NLK ID T + + G+N FADM++ EF
Sbjct: 66 FESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDE-TNKKNNSYWLGLNVFADMSNDEFKE 124
Query: 137 --------NHGLSSLDWEQIENLKSTFETYSFNSSNSYGLAESINYKDKGKVLPKVQDQH 188
N+ + L +E++ N + E ++++ KG V P V++Q
Sbjct: 125 KYTGSIAGNYTTTELSYEEVLN------------DGDVNIPEYVDWRQKGAVTP-VKNQG 171
Query: 189 LCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
CGS WA SAV+ +ES I+ L E S+Q
Sbjct: 172 SCGSAWAFSAVSTIESIIKIRTGNLNEYSEQ 202
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 76/158 (48%), Gaps = 17/158 (10%)
Query: 60 GSEEASTFDLEEFLDHGNQFKDFVREYERQYDSDSEIERRFDIFRNNLKTIDYYT-KHEQ 118
GS STF E ++++F Y R Y + E R IF+ L+T + + K+ Q
Sbjct: 10 GSALPSTFVAE-------KWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQ 62
Query: 119 GTATY--GVNRFADMTDSE---FNHGL-SSLDWEQIENLKSTFETYSFNSSNSYGLAESI 172
G +Y GVN F DMT E + HGL D + T E N+S Y S
Sbjct: 63 GLVSYTLGVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRY--PASF 120
Query: 173 NYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKH 210
+++D+G V P V++Q CGS WA S+ +ES I +
Sbjct: 121 DWRDQGMVSP-VKNQGSCGSSWAFSSTGAIESQMKIAN 157
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 19/154 (12%)
Query: 73 LDHGNQFKDFVREYERQYDSDSEIERRFDIFRNNLKTIDYYT-KHEQGTATY--GVNRFA 129
LDH + + + Y +QY +E R I+ NLK + + +H G +Y G+N
Sbjct: 8 LDH--HWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLG 65
Query: 130 DMTDSEFNHGLSSL----DWEQIENLKSTFETYSFNSSNSYGLAESINYKDKGKVLPKVQ 185
DMT E +SSL W++ ++ S+ + L +S+++++KG V +V+
Sbjct: 66 DMTSEEVMSLMSSLRVPSQWQR---------NITYKSNPNRILPDSVDWREKGCVT-EVK 115
Query: 186 DQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
Q CG+ WA SAV LE+ +K +L+ LS Q
Sbjct: 116 YQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQ 149
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 16/149 (10%)
Query: 78 QFKDFVREYERQYDSDSEIERRFDIFRNNLKTI-DYYTKHEQGTATY--GVNRFADMTDS 134
Q+ F +++ Y S E RR IF++N+ I ++ K E+G TY +N+F DM+
Sbjct: 26 QWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKE 85
Query: 135 EF----NHGLSSLDWEQIENLKSTFETYSFNSSNSYGLAESINYKDKGKVLPKVQDQHLC 190
EF N G + + ENL+ + S+ LA S++++ + +V+DQ C
Sbjct: 86 EFLAYVNRGKAQKP-KHPENLRMPY------VSSKKPLAASVDWRSN--AVSEVKDQGQC 136
Query: 191 GSCWAHSAVACLESAYAIKHNELIELSKQ 219
GS W+ S +E A++ L LS+Q
Sbjct: 137 GSSWSFSTTGAVEGQLALQRGRLTSLSEQ 165
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 70 EEFLDHGNQFKDFVREYERQYDSD-SEIERRFDIFRNNLKTIDYYT-KHEQGTATY--GV 125
EE LD ++ + + + +QY++ EI RR I+ NLK I + + G TY +
Sbjct: 4 EEILD--THWELWKKTHRKQYNNKVDEISRRL-IWEKNLKYISIHNLEASLGVHTYELAM 60
Query: 126 NRFADMTDSEFNHGLSSLDWEQIENLKSTFETYSFNSSNSYGLAESINYKDKGKVLPKVQ 185
N DMT E ++ L + + +S Y +S++Y+ KG V P V+
Sbjct: 61 NHLGDMTSEEVVQKMTGLK-VPLSHSRSNDTLYIPEWEGR--APDSVDYRKKGYVTP-VK 116
Query: 186 DQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+Q CGSCWA S+V LE K +L+ LS Q
Sbjct: 117 NQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQ 150
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 78 QFKDFVREYERQYDSDSEIERRFDIFRNNLKTIDYYTK-HEQG--TATYGVNRFADMTDS 134
Q+ + + R Y + E RR ++ N+K I+ + + + +G + T +N F DMT
Sbjct: 7 QWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSE 65
Query: 135 EFNHGLSSLDWEQIENLKSTFETYSFNSSNSYGLAESINYKDKGKVLPKVQDQHLCGSCW 194
EF ++ L +N K + F Y S+++++KG V P V++Q CGS W
Sbjct: 66 EFRQVMNGL-----QNRKPR-KGKVFQEPLFYEAPRSVDWREKGYVTP-VKNQGQCGSSW 118
Query: 195 AHSAVACLESAYAIKHNELIELSKQ 219
A SA LE K LI LS+Q
Sbjct: 119 AFSATGALEGQMFRKTGRLISLSEQ 143
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 78 QFKDFVREYERQYDSDSEIERRFDIFRNNLKTIDYYTK-HEQG--TATYGVNRFADMTDS 134
Q+ + + R Y + E RR ++ N+K I+ + + + +G + T +N F DMT
Sbjct: 11 QWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSE 69
Query: 135 EFNHGLSSLDWEQIENLKSTFETYSFNSSNSYGLAESINYKDKGKVLPKVQDQHLCGSCW 194
EF ++ +N K + F Y S+++++KG V P V++Q CGS W
Sbjct: 70 EFRQVMNGF-----QNRKPR-KGKVFQEPLFYEAPRSVDWREKGYVTP-VKNQGQCGSXW 122
Query: 195 AHSAVACLESAYAIKHNELIELSKQ 219
A SA LE K LI LS+Q
Sbjct: 123 AFSATGALEGQMFRKTGRLISLSEQ 147
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 9/139 (6%)
Query: 84 REYERQYDSDSEIERRFDIFRNNLKTI-DYYTKHEQGTATY--GVNRFADMTDSEFNHGL 140
R Y ++Y+ + RR +I+ N+K I ++ +H+ G TY G+N+F DMT EF
Sbjct: 10 RMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKY 68
Query: 141 SSLDWEQIENLKSTFETYSFNSSNSYGLAESINYKDKGKVLPKVQDQHLCGSCWAHSAVA 200
+ + + ++ S Y +N+ + + I++++ G V +V+DQ CGS WA S
Sbjct: 69 LT-EMSRASDILSHGVPYE---ANNRAVPDKIDWRESGYV-TEVKDQGNCGSGWAFSTTG 123
Query: 201 CLESAYAIKHNELIELSKQ 219
+E Y I S+Q
Sbjct: 124 TMEGQYMKNERTSISFSEQ 142
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 125 VNRFADMTDSEFNHGLSSLDWEQIENLKSTFETYSFNSSNSYGLAESINYKDKGKVLPKV 184
+N F DMT EF ++ + K F+ F Y S+++++KG V P V
Sbjct: 2 MNAFGDMTSEEFRQVMNGFQNRKPRKGK-VFQEPLF-----YEAPRSVDWREKGYVTP-V 54
Query: 185 QDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
++Q CGSCWA SA LE K LI LS+Q
Sbjct: 55 KNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQ 89
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L E+++++ KG V P V+ Q CGSCWA SAVA +E I+ +L+ELS+Q
Sbjct: 1 LPENVDWRKKGAVTP-VRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQ 51
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L E+++++ KG V P V+ Q CGSCWA SAVA +E I+ +L+ELS+Q
Sbjct: 1 LPENVDWRKKGAVTP-VRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQ 51
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 170 ESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
ESI++++KG V P V++Q+ CGSCWA S VA +E I +LI LS+Q
Sbjct: 3 ESIDWREKGAVTP-VKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQ 51
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 8/72 (11%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ-----PPK 222
L +SI++++ G V+P V++Q CGSCWA S VA +E I +LI LS+Q
Sbjct: 3 LPDSIDWRENGAVVP-VKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA 61
Query: 223 THGRFYKGGVMN 234
HG +GG MN
Sbjct: 62 NHG--CRGGWMN 71
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L E I+++ KG V P V++Q CGSCWA S V+ +ES I+ LI LS+Q
Sbjct: 1 LPEQIDWRKKGAVTP-VKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQ 51
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQP-----PK 222
L E I+++ KG V P V++Q CGSCWA S V+ +ES I+ LI LS+Q K
Sbjct: 1 LPEQIDWRKKGAVTP-VKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK 59
Query: 223 THGRFYKGGVMNLPHMLCSKGPYSLNHAVLNVGYDNES 260
HG KGG Y+ + + N G D E+
Sbjct: 60 NHG--CKGGAF----------VYAYQYIIDNGGIDTEA 85
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 184 VQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
V+DQ CGSCWA S++ +ES YAI+ N+LI LS+Q
Sbjct: 33 VKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQ 68
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L ES++++ KG V P V+ Q C SCWA S VA +E IK L+ELS+Q
Sbjct: 1 LPESVDWRAKGAVTP-VKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQ 51
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
++++++KG V P V+DQ CGSCWA S + +E + + N L+ LS+Q
Sbjct: 4 AVDWREKGAVTP-VKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQ 51
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+ S++++ KG V V+DQ CGSCWA S + +E IK N+L+ LS+Q
Sbjct: 2 VPASVDWRKKGAVT-SVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQ 52
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 170 ESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+S++Y++KG V P V++Q CGSCWA S+V LE K +L+ LS Q
Sbjct: 3 DSVDYREKGYVTP-VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQ 51
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L ++++ +G V P V+DQ CGSCWA S LE A+ K +L+ LS+Q
Sbjct: 7 LPAGVDWRSRGCVTP-VKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQ 57
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L S++++ KG V V+DQ CGSCWA S V +E AI+ L+ LS+Q
Sbjct: 4 LPPSVDWRQKGAVT-GVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQ 54
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 178 GKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
G V P V+DQ LCGSCWA S+V +ES YAI+ L S+Q
Sbjct: 30 GGVTP-VKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQ 70
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 170 ESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+SI+Y+ KG V P V++Q CGSCWA S+V LE K +L+ LS Q
Sbjct: 3 DSIDYRKKGYVTP-VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQ 51
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L E ++++ KG V+P +++Q CGSCWA S V +ES I+ LI LS+Q
Sbjct: 1 LPEHVDWRAKGAVIP-LKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQ 51
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L ++++ KG V +++Q CGSCWA SAVA +ES I+ +LI LS+Q
Sbjct: 1 LPSFVDWRSKGAV-NSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQ 51
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 170 ESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+S++Y+ KG V P V++Q CGSCWA S+V LE K +L+ LS Q
Sbjct: 5 DSVDYRKKGYVTP-VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQ 53
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L +S++++ KG V P V++Q CGSCWA SA LE K +L+ LS+Q
Sbjct: 1 LPKSVDWRKKGYVTP-VKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQ 51
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 170 ESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+S++Y+ KG V P V++Q CGSCWA S+V LE K +L+ LS Q
Sbjct: 3 DSVDYRKKGYVTP-VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQ 51
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 170 ESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+S++Y+ KG V P V++Q CGSCWA S+V LE K +L+ LS Q
Sbjct: 2 DSVDYRKKGYVTP-VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQ 50
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 170 ESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+S++Y+ KG V P V++Q CGSCWA S+V LE K +L+ LS Q
Sbjct: 1 DSVDYRKKGYVTP-VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQ 49
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQPPKTHGR 226
L + ++++ G V+ ++DQ CGSCWA S +A +E I +LI LS+Q GR
Sbjct: 1 LPDYVDWRSSGAVV-DIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGR 58
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+ E ++++ KG V P V++Q CGSCWA SAV +E I+ L E S+Q
Sbjct: 1 IPEYVDWRQKGAVTP-VKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQ 51
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
S+++++KG V P V++Q CGSCWA SA LE K LI LS+Q
Sbjct: 4 SVDWREKGYVTP-VKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQ 51
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
S+++++KG V P V++Q CGSCWA SA LE K LI LS+Q
Sbjct: 5 SVDWREKGYVTP-VKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQ 52
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L +S+++++KG V +V+ Q CG+CWA SAV LE+ +K +L+ LS Q
Sbjct: 4 LPDSVDWREKGCVT-EVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQ 54
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
S+++++KG V P V++Q CGSCWA SA LE K LI LS+Q
Sbjct: 4 SVDWREKGYVTP-VKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQ 51
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L +S+++++KG V +V+ Q CG+CWA SAV LE+ +K +L+ LS Q
Sbjct: 2 LPDSVDWREKGCVT-EVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQ 52
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L +S+++++KG V +V+ Q CG+CWA SAV LE+ +K +L+ LS Q
Sbjct: 1 LPDSVDWREKGCVT-EVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQ 51
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L +S+++++KG V +V+ Q CG+CWA SAV LE+ +K +L+ LS Q
Sbjct: 1 LPDSVDWREKGCVT-EVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQ 51
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L +S+++++KG V +V+ Q CG+CWA SAV LE+ +K +L+ LS Q
Sbjct: 1 LPDSVDWREKGCVT-EVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQ 51
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L +S+++++KG V +V+ Q CG+CWA SAV LE+ +K +L+ LS Q
Sbjct: 2 LPDSVDWREKGCVT-EVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQ 52
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
S+++++KG V P V++Q CGSCWA SA LE K LI LS+Q
Sbjct: 4 SVDWREKGYVTP-VKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQ 51
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L +S+++++KG V +V+ Q CG+CWA SAV LE+ +K +L+ LS Q
Sbjct: 1 LPDSVDWREKGCVT-EVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQ 51
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 184 VQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
V+DQ CGS WA S++ +ES YAI+ N+LI LS+Q
Sbjct: 32 VKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQ 67
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
S++++ KG + V++Q CGSCW S LESA AI +++ L++Q
Sbjct: 4 SMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQ 52
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 240 CSKGPYSLNHAVLNVGYDNES 260
C K P +NHAVL VGY E+
Sbjct: 157 CHKTPDKVNHAVLAVGYGEEN 177
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L +S+++++KG V +V+ Q CG+CWA SAV LE+ +K +L+ LS Q
Sbjct: 1 LPDSVDWREKGCVT-EVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQ 51
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+ E ++++ KG V P V++Q CGSCWA SAV +E I+ L + S+Q
Sbjct: 1 IPEYVDWRQKGAVTP-VKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQ 51
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
SI+++ KG V V+DQ CG CWA A +E AI LI +S+Q
Sbjct: 4 SIDWRKKGAVT-SVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQ 51
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 170 ESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+SI+++ KG V P V++Q CGS WA S +A +E I L+ELS+Q
Sbjct: 3 QSIDWRAKGAVTP-VKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQ 51
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 170 ESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+SI+Y+ KG V P V++Q CGSCWA S+V LE L+ L+ Q
Sbjct: 3 DSIDYRKKGYVTP-VKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQ 51
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 170 ESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
E ++++ KG V P V++Q CGSCWA SAV +E I+ L + S+Q
Sbjct: 3 EYVDWRQKGAVTP-VKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQ 51
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L +S++++ KG V P V++Q CGS WA SA LE K +L+ LS+Q
Sbjct: 1 LPKSVDWRKKGYVTP-VKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQ 51
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 170 ESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
ES ++ KG V+ KV+ Q CGS WA SA +E+A+AI L+ LS+Q
Sbjct: 4 ESWDWSKKG-VITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQ 52
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 227 FYKGGVMNLPHMLCSKGPYSLNHAVLNVGYDNE 259
FY GG+ + + CS PY +NH VL VGY +E
Sbjct: 149 FYSGGIYDGGN--CSS-PYGINHFVLIVGYGSE 178
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
S+++++KG V P V++Q CGS WA SA LE K LI LS+Q
Sbjct: 4 SVDWREKGYVTP-VKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQ 51
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
S+++++KG V P V++Q CGS WA SA LE K LI LS+Q
Sbjct: 5 SVDWREKGYVTP-VKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQ 52
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 16/145 (11%)
Query: 79 FKDFVREYERQYDS--DSEIERRFDIFRNNLKTIDYYTKHEQGTATYGVNRFADMTDSEF 136
F+++ + + + Y + D E R+ N L+++ Y + G A +N +D++ EF
Sbjct: 8 FEEYKKAFNKSYATFEDEEAARK-----NFLESVKYVQSN--GGA---INHLSDLSLDEF 57
Query: 137 NHGLSSLDWEQIENLKSTFETYS-FNSSNSYGLAES-INYKDKGKVLPKVQDQHLCGSCW 194
+ + E E+LK+ F+ + N+ + G A + I+ + V P ++ Q CGS W
Sbjct: 58 KNRFL-MSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTP-IRMQGGCGSAW 115
Query: 195 AHSAVACLESAYAIKHNELIELSKQ 219
A S VA ESAY ++ ++L++Q
Sbjct: 116 AFSGVAATESAYLAYRDQSLDLAEQ 140
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQPPKTHGR 226
L + ++++ G V+ ++DQ CGS WA S +A +E I +LI LS+Q GR
Sbjct: 1 LPDYVDWRSSGAVV-DIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGR 58
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+ E ++++ KG V P V++Q CGS WA SAV +E I+ L E S+Q
Sbjct: 1 IPEYVDWRQKGAVTP-VKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQ 51
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L +S+++++KG V +V+ Q CG+ WA SAV LE+ +K +L+ LS Q
Sbjct: 1 LPDSVDWREKGCVT-EVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQ 51
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L +S+++++KG V +V+ Q CG+ WA SAV LE+ +K +L+ LS Q
Sbjct: 3 LPDSVDWREKGCVT-EVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQ 53
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
S+++++KG V P V++Q CGS WA SA LE K LI LS+Q
Sbjct: 4 SVDWREKGYVTP-VKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQ 51
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L +S+++++KG V +V+ Q CG+ WA SAV LE+ +K +L+ LS Q
Sbjct: 1 LPDSVDWREKGCVT-EVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQ 51
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L +S+++++KG V +V+ Q CG+ WA SAV LE+ +K +L+ LS Q
Sbjct: 2 LPDSVDWREKGCVT-EVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQ 52
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
S+++++KG V P V++Q CGS WA SA LE K LI LS+Q
Sbjct: 4 SVDWREKGYVTP-VKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQ 51
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
S+++++KG V P V++Q CGS WA SA LE K LI LS+Q
Sbjct: 4 SVDWREKGYVTP-VKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQ 51
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQPPKTHGR 226
L ++++ G V+ ++ Q CG CWA SA+A +E I LI LS+Q GR
Sbjct: 1 LPSYVDWRSAGAVV-DIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGR 58
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 164 NSYGLAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
NS + ++ + V P ++ Q CGSCWA S VA ESAY N ++LS+Q
Sbjct: 7 NSVNVPSELDLRSLRTVTP-IRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQ 61
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+ E ++++ KG V P V++Q CGS WA SAV +E I+ L + S+Q
Sbjct: 1 IPEYVDWRQKGAVTP-VKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQ 51
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+ E ++++ KG V P V++Q CGS WA SAV +E I+ L + S+Q
Sbjct: 1 IPEYVDWRQKGAVTP-VKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQ 51
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 79 FKDFVREYERQYDSDSEIERRFDIFRNNLKTIDYYTKHEQG-TATYGVNRFADMTDSEFN 137
F F Y + Y ++ E +RR+ IF+NNL I +T ++QG + + +N F D++ EF
Sbjct: 25 FSSFQAMYAKSYATEEEKQRRYAIFKNNLVYI--HTHNQQGYSYSLKMNHFGDLSRDEFR 82
Query: 138 HGLSSLDWEQIENLKS 153
L +++ NLKS
Sbjct: 83 RKY--LGFKKSRNLKS 96
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 179 KVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+ + ++ Q CGSCWA S VA ESAY N+ ++L++Q
Sbjct: 20 RTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQ 60
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+++++ +G V V+DQ CGSCWA SA+ +E + + + L LS+Q
Sbjct: 4 AVDWRARGAVT-AVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQ 51
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+++++ +G V V+DQ CGSCWA SA+ +E + + + L LS+Q
Sbjct: 4 AVDWRARGAVT-AVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQ 51
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLES 204
+ SI+++ KG V P V++Q CGSCW S+VA +E
Sbjct: 1 IPTSIDWRQKGAVTP-VRNQGGCGSCWTFSSVAAVEG 36
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+++++ +G V V+DQ CGSCWA SA+ +E + + + L L++Q
Sbjct: 4 AVDWRARGAVT-AVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQ 51
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 171 SINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+++++ +G V V+DQ CGSCWA SA+ +E + + + L L++Q
Sbjct: 4 AVDWRARGAVT-AVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQ 51
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQPPKTHGR 226
L ++++ G V+ ++ Q CG WA SA+A +E I LI LS+Q GR
Sbjct: 1 LPSYVDWRSAGAVV-DIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGR 58
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 179 KVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+ + ++ Q CGSCWA S VA ESAY + ++L++Q
Sbjct: 20 RTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQ 60
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 173 NYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAY 206
+++ KG V KV+DQ +CGSCWA S +E +
Sbjct: 6 DWRSKGAVT-KVKDQGMCGSCWAFSVTGNVEGQW 38
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 226 RFYKGGVMNLPHMLCSKGPYSLNHAVLNVGYDNES 260
+FY+ G+ LCS P+ ++HAVL VGY S
Sbjct: 140 QFYRHGISRPLRPLCS--PWLIDHAVLLVGYGQRS 172
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 179 KVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+ + ++ Q CGS WA S VA ESAY + ++L++Q
Sbjct: 20 RTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQ 60
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 168 LAESINYKDKGKVLP---KVQDQHLCGSCWAHSAVACLESAYAIKHNELIEL 216
L ES + +++ P +++DQ CGSCWA AV + I N + +
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNV 52
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 179 KVLPKVQDQHLCGSCWAHSAVACLESAYA 207
+P++ DQ CGSCWA +A + + +
Sbjct: 85 PTIPQIADQSACGSCWAVAAASAMSDRFC 113
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 179 KVLPKVQDQHLCGSCWAHSAVACLESAY 206
+P++ DQ CGSCWA +A + + +
Sbjct: 86 PTIPQIADQSACGSCWAVAAASAMSDRF 113
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 168 LAESINYKDKGKVLP---KVQDQHLCGSCWAHSAVACLESAYAIKHNELIEL 216
L ES + +++ P +++DQ CGSCWA AV + I N + +
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNV 52
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 168 LAESINYKDKGKVLP---KVQDQHLCGSCWAHSAVACLESAYAIKHNELIEL 216
L ES + +++ P +++DQ CGSCWA AV + I N + +
Sbjct: 7 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNV 58
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 179 KVLPKVQDQHLCGSCWAHSAVACLESAYA 207
+P++ DQ CGSCWA +A + + +
Sbjct: 108 PTIPQIADQSACGSCWAVAAASAMSDRFC 136
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 168 LAESINYKDKGKVLP---KVQDQHLCGSCWAHSAVACLESAYAIKHNELIEL 216
L ES + +++ P +++DQ CGSCWA AV + I N + +
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNV 52
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 31.2 bits (69), Expect = 0.61, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 168 LAESINYKDKGKVLP---KVQDQHLCGSCWAHSAVACLESAYAIKHN 211
L ES + +++ P +++DQ CGSCWA AV + I N
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSN 47
>pdb|3GS3|A Chain A, Structure Of The N-Terminal Heat Domain Of Symplekin From
D. Melanogaster
Length = 257
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 177 KGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQPPKTHGRFYKGGVMNLP 236
K ++L KVQ+ L GSC A A LES ++ H+ +E+ KQ + K V LP
Sbjct: 32 KCELLAKVQETVL-GSC-AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP 89
Query: 237 HML 239
H++
Sbjct: 90 HVI 92
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 30.4 bits (67), Expect = 1.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 181 LPKVQDQHLCGSCWAHSAVACLESAYAIKHN 211
+ +++DQ CGSCWA AV + I N
Sbjct: 17 IKEIRDQGSCGSCWAFGAVEAISDRICIHTN 47
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 78 QFKDFVREYERQYDSDSEIERRFDIFRNNLKTIDYYTKHEQGTATY--GVNRFADMTDSE 135
++ ++ ++++ Y+++ ++ RR + + ++ K E+G T+ G+N AD+T E
Sbjct: 9 EWVEYKSKFDKNYEAEEDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEE 68
Query: 136 F 136
F
Sbjct: 69 F 69
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 179 KVLPKVQDQHLCGSCWAHSAVACLESAYAIKHN--ELIELS 217
K + ++DQ CGSCWA AV + I+ + +ELS
Sbjct: 17 KSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELS 57
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 179 KVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIEL 216
+ +++DQ CGSCWA AV + I N + +
Sbjct: 78 PTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSV 115
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 181 LPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIEL 216
+ +++DQ CGSCWA AV + I N + +
Sbjct: 18 IKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSV 53
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 179 KVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIEL 216
+ +++DQ CGSCWA AV + I N + +
Sbjct: 15 PTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSV 52
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 179 KVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIEL 216
+ +++DQ CGSCWA AV + I N + +
Sbjct: 17 PTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSV 54
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 168 LAESINYKDKGKVLP---KVQDQHLCGSCWAHSAVACLESAYAIKHNELIEL 216
L ES + +++ P +++DQ CGS WA AV + I N + +
Sbjct: 63 LPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNV 114
>pdb|1USM|A Chain A, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Pro9leu Mutant
Length = 80
Score = 27.7 bits (60), Expect = 6.3, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 14/65 (21%)
Query: 143 LDWEQIENLKSTFETYSFNSSNSYGLAESINYKDKGKVLPKVQDQH---------LCGSC 193
+DWE+ ENLK +T++F + E++++ ++ L + ++ H +
Sbjct: 1 MDWEERENLKRLVKTFAFPN-----FREALDFANRVGALAERENHHPRLTVEWGRVTVEW 55
Query: 194 WAHSA 198
W HSA
Sbjct: 56 WTHSA 60
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 184 VQDQHL---CGSCWAHSAVACLESAYAIK 209
++QH+ CGSCWAH++ + + IK
Sbjct: 54 TRNQHIPQYCGSCWAHASTSAMADRINIK 82
>pdb|2GJP|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase,
Crystallized With The Substrate Analogue Acarbose And
Maltose
pdb|2GJR|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase Without Any
Substrate Analogues
Length = 485
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 48 NLILQRSQPNSYGSEEASTFDLE-----EFLDHGNQFKDFVREYER----QYDSDSEIER 98
N++ PN+ E + + +E +F GN + DF + +D + +
Sbjct: 116 NVLAVEVNPNNRNQEISGDYTIEAWTKFDFPGRGNTYSDFKWRWYHFDGVDWDQSRQFQN 175
Query: 99 RFDIFRNNLKTIDYYTKHEQGTATYGVNRFADMTDSE 135
R FR + K D+ E G Y + DM E
Sbjct: 176 RIYKFRGDGKAWDWEVDSENGNYDYLMYADVDMDHPE 212
>pdb|1W9X|A Chain A, Bacillus Halmapalus Alpha Amylase
Length = 481
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 48 NLILQRSQPNSYGSEEASTFDLE-----EFLDHGNQFKDFVREYER----QYDSDSEIER 98
N++ PN+ E + + +E +F GN + DF + +D + +
Sbjct: 112 NVLAVEVNPNNRNQEISGDYTIEAWTKFDFPGRGNTYSDFKWRWYHFDGVDWDQSRQFQN 171
Query: 99 RFDIFRNNLKTIDYYTKHEQGTATYGVNRFADMTDSE 135
R FR + K D+ E G Y + DM E
Sbjct: 172 RIYKFRGDGKAWDWEVDSENGNYDYLMYADVDMDHPE 208
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 10/56 (17%)
Query: 49 LILQRSQPNSY--GSEEASTFDLEEFLD-----HGNQFKDFVREYERQYDSDSEIE 97
L+LQ+ +P+ Y +EE T +EEFLD G +KD+V E +++Y +E++
Sbjct: 267 LMLQQEKPDDYVVATEEGHT--VEEFLDVSFGYLGLNWKDYV-EIDQRYFRPAEVD 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,584,980
Number of Sequences: 62578
Number of extensions: 359897
Number of successful extensions: 1159
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1016
Number of HSP's gapped (non-prelim): 140
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)