RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14862
(263 letters)
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 90.6 bits (225), Expect = 9e-21
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 25/163 (15%)
Query: 73 LDHGNQFKDFVREYERQYDSDSEIERRFDIFRNNLKTIDYYTKHEQGTATYGVNRFADMT 132
L++ N F F++E+ ++Y + E+++R+ F NL I+ + E G+NRF D++
Sbjct: 163 LENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLS 222
Query: 133 DSEFNHGLSSLDWEQIENLKST-FETYSFNSSNSYGLAESIN-YKDK------------- 177
EF ++ LKS F++ S + I YK K
Sbjct: 223 FEEFK--------KKYLTLKSFDFKSNGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRL 274
Query: 178 -GKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
V P V+DQ CGSCWA S V +ES YAI+ NEL+ LS+Q
Sbjct: 275 HNGVTP-VKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQ 316
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease.
Length = 175
Score = 81.5 bits (202), Expect = 5e-19
Identities = 44/137 (32%), Positives = 56/137 (40%), Gaps = 49/137 (35%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ------PP 221
L ES +++ KG V P V+DQ CGSCWA SA LE Y IK +L+ LS+Q
Sbjct: 1 LPESFDWRKKGAVTP-VKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSGG 59
Query: 222 KTHG--------------------------------------RFYKGGVMNLPHMLCSKG 243
G +FYK G+ + H C G
Sbjct: 60 GNCGCNGGLPDNAFEYIKKNGGLETESCYPYTGSVAIDASDFQFYKSGIYD--HPGCGSG 117
Query: 244 PYSLNHAVLNVGYDNES 260
+L+HAVL VGY E
Sbjct: 118 --TLDHAVLIVGYGTEV 132
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 77.4 bits (191), Expect = 3e-16
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 78 QFKDFVREYERQYDSDSEIERRFDIFRNNLKTIDYYTKHEQGTATY--GVNRFADMTDSE 135
+F++F ++Y R++ + +E RF FRNN + K +G Y +N+F+D+T+ E
Sbjct: 125 EFEEFNKKYNRKHATHAERLNRFLTFRNNYLEV----KSHKGDEPYSKEINKFSDLTEEE 180
Query: 136 FNHGLSSLDWEQIENLKSTF----------ETYSFNSSNSYGLAESINYKDK-------- 177
F + N S TY N + E + K
Sbjct: 181 FRKLFPVIKVPPKSNSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDW 240
Query: 178 --GKVLPKVQDQ-HLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
+ KV+DQ CGSCWA S+V +ES Y I ++ ++LS+Q
Sbjct: 241 RRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQ 285
Score = 32.0 bits (73), Expect = 0.34
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 8/34 (23%)
Query: 228 YKGGVMNLPHMLCSKGPYSLNHAVLNV--GYDNE 259
YK GV N C K SLNHAVL V GYD +
Sbjct: 373 YKSGVYNGE---CGK---SLNHAVLLVGEGYDEK 400
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease.
Length = 213
Score = 74.5 bits (184), Expect = 4e-16
Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 168 LAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
L ES ++++KG V P V+DQ CGSCWA SAV LE Y IK +L+ LS+Q
Sbjct: 1 LPESFDWREKGAVTP-VKDQGQCGSCWAFSAVGALEGRYCIKTGKLVSLSEQ 51
Score = 33.3 bits (77), Expect = 0.070
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 226 RFYKGGVMNLPHMLCSKGPYSLNHAVLNVGYDNES 260
+ YK GV CS L+HAVL VGY E+
Sbjct: 144 QLYKSGVYKHTE--CSG---ELDHAVLIVGYGTEN 173
>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain
(I29). This domain is found at the N-terminus of some
C1 peptidases such as Cathepsin L where it acts as a
propeptide. There are also a number of proteins that are
composed solely of multiple copies of this domain such
as the peptidase inhibitor salarin. This family is
classified as I29 by MEROPS.
Length = 58
Score = 70.0 bits (172), Expect = 5e-16
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 79 FKDFVREYERQYDSDSEIERRFDIFRNNLKTIDYYTKHEQGTATYGVNRFADMTDSEF 136
F+D+ ++Y + Y S+ E RF IF+ NL+ I+ + K + T G+N+FAD+TD EF
Sbjct: 1 FEDWKKKYGKSYYSEEEELYRFQIFKENLRFIEEHNKKGNVSYTLGLNQFADLTDEEF 58
>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain
(I29). This domain is found at the N-terminus of some
C1 peptidases such as Cathepsin L where it acts as a
propeptide. There are also a number of proteins that are
composed solely of multiple copies of this domain such
as the peptidase inhibitor salarin. This family is
classified as I29 by MEROPS. Peptide proteinase
inhibitors can be found as single domain proteins or as
single or multiple domains within proteins; these are
referred to as either simple or compound inhibitors,
respectively. In many cases they are synthesised as part
of a larger precursor protein, either as a prepropeptide
or as an N-terminal domain associated with an inactive
peptidase or zymogen. This domain prevents access of the
substrate to the active site. Removal of the N-terminal
inhibitor domain either by interaction with a second
peptidase or by autocatalytic cleavage activates the
zymogen. Other inhibitors interact direct with
proteinases using a simple noncovalent lock and key
mechanism; while yet others use a conformational
change-based trapping mechanism that depends on their
structural and thermodynamic properties.
Length = 57
Score = 67.7 bits (166), Expect = 3e-15
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 79 FKDFVREYERQYDSDSEIERRFDIFRNNLKTIDYYTKHEQGTATYGVNRFADMTDSE 135
F+ + +++ + Y S+ E RRF IF+ NLK I+ + K + + GVN+F+D+T E
Sbjct: 1 FEQWKKKHGKSYSSEEEEARRFAIFKENLKKIEEHNKKYEHSYKLGVNQFSDLTPEE 57
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 71.1 bits (175), Expect = 6e-15
Identities = 28/50 (56%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 170 ESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQ 219
ES+++++KG V P V+DQ CGSCWA S V LE AYAIK +L+ LS+Q
Sbjct: 2 ESVDWREKGAVTP-VKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQ 50
Score = 37.6 bits (88), Expect = 0.003
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 226 RFYKGGVMNLPHMLCSKGPYSLNHAVLNVGYDNE 259
+FYKGG+ + P CS +LNHAVL VGY E
Sbjct: 141 QFYKGGIYSGPC--CS--NTNLNHAVLLVGYGTE 170
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 70.9 bits (173), Expect = 4e-14
Identities = 40/141 (28%), Positives = 80/141 (56%), Gaps = 2/141 (1%)
Query: 79 FKDFVREYERQYDSDSEIERRFDIFRNNLKTIDYYTKHEQGTATYGVNRFADMTDSEFNH 138
F++F R Y+R Y + +E ++R F NL+ + + + A +G+ +F D++++EF
Sbjct: 38 FEEFKRTYQRAYGTLTEEQQRLANFERNLELMREH-QARNPHARFGITKFFDLSEAEFAA 96
Query: 139 GLSSLDWEQIENLKSTFETYSFNSSNSYGLAESINYKDKGKVLPKVQDQHLCGSCWAHSA 198
+ + + Y ++ + +++++++KG V P V++Q CGSCWA SA
Sbjct: 97 RYLNGAAYFAAAKQHAGQHYRKARADLSAVPDAVDWREKGAVTP-VKNQGACGSCWAFSA 155
Query: 199 VACLESAYAIKHNELIELSKQ 219
V +ES +A+ ++L+ LS+Q
Sbjct: 156 VGNIESQWAVAGHKLVRLSEQ 176
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database
nomenclature), also referred to as the papain family;
composed of two subfamilies of cysteine peptidases
(CPs), C1A (papain) and C1B (bleomycin hydrolase).
Papain-like enzymes are mostly endopeptidases with some
exceptions like cathepsins B, C, H and X, which are
exopeptidases. Papain-like CPs have different functions
in various organisms. Plant CPs are used to mobilize
storage proteins in seeds while mammalian CPs are
primarily lysosomal enzymes responsible for protein
degradation in the lysosome. Papain-like CPs are
synthesized as inactive proenzymes with N-terminal
propeptide regions, which are removed upon activation.
Bleomycin hydrolase (BH) is a CP that detoxifies
bleomycin by hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. It forms a hexameric ring barrel structure
with the active sites imbedded in the central channel.
Some members of the C1 family are proteins classified as
non-peptidase homologs which lack peptidase activity or
have missing active site residues.
Length = 223
Score = 43.7 bits (103), Expect = 3e-05
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 180 VLPKVQDQHLCGSCWAHSAVACLESAYAIKHN--ELIELSKQ 219
L V++Q GSCWA ++ LESAY IK E ++LS Q
Sbjct: 8 RLTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQ 49
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 36.1 bits (84), Expect = 0.012
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 184 VQDQHLCGSCWAHSAVACL 202
++DQ CGSCWA SAV
Sbjct: 19 IRDQGNCGSCWAFSAVEAF 37
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational
modification, protein turnover, chaperones].
Length = 372
Score = 35.6 bits (82), Expect = 0.021
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 167 GLAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESA 205
L + +D+GKV P V+DQ GSCWA + LES
Sbjct: 98 SLPSYFDRRDEGKVSP-VKDQGSGGSCWAFATTRSLESY 135
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as
Dipeptidyl Peptidase I (DPPI), an atypical papain-like
cysteine peptidase with chloride dependency and
dipeptidyl aminopeptidase activity, resulting from its
tetrameric structure which limits substrate access. Each
subunit of the tetramer is composed of three peptides:
the heavy and light chains, which together adopts the
papain fold and forms the catalytic domain; and the
residual propeptide region, which forms a beta barrel
and points towards the substrate's N-terminus. The
subunit composition is the result of the unique
characteristic of procathepsin C maturation involving
the cleavage of the catalytic domain and the
non-autocatalytic excision of an activation peptide
within its propeptide region. By removing N-terminal
dipeptide extensions, cathepsin C activates granule
serine peptidases (granzymes) involved in cell-mediated
apoptosis, inflammation and tissue remodelling.
Loss-of-function mutations in cathepsin C are associated
with Papillon-Lefevre and Haim-Munk syndromes, rare
diseases characterized by hyperkeratosis and early-onset
periodontitis. Cathepsin C is widely expressed in many
tissues with high levels in lung, kidney and placenta.
It is also highly expressed in cytotoxic lymphocytes and
mature myeloid cells.
Length = 243
Score = 33.9 bits (78), Expect = 0.063
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 182 PKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQP 220
V++Q CGSC+A ++V LE+ I N+ L +QP
Sbjct: 18 SPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQP 56
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only
papain-like lysosomal cysteine peptidase exhibiting
carboxymonopeptidase activity. It can also act as a
carboxydipeptidase, like cathepsin B, but has been shown
to preferentially cleave substrates through a
monopeptidyl carboxypeptidase pathway. The propeptide
region of cathepsin X, the shortest among papain-like
peptidases, is covalently attached to the active site
cysteine in the inactive form of the enzyme. Little is
known about the biological function of cathepsin X. Some
studies point to a role in early tumorigenesis. A more
recent study indicates that cathepsin X expression is
restricted to immune cells suggesting a role in
phagocytosis and the regulation of the immune response.
Length = 239
Score = 32.4 bits (74), Expect = 0.19
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 184 VQDQHL---CGSCWAHSAVACLESAYAIKHN 211
++QH+ CGSCWAH + + L I
Sbjct: 19 TRNQHIPQYCGSCWAHGSTSALADRINIARK 49
>gnl|CDD|149682 pfam08702, Fib_alpha, Fibrinogen alpha/beta chain family.
Fibrinogen is a protein involved in platelet aggregation
and is essential for the coagulation of blood. This
domain forms part of the central coiled coiled region of
the protein which is formed from two sets of three
non-identical chains (alpha, beta and gamma).
Length = 146
Score = 28.8 bits (65), Expect = 1.6
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 80 KDFVREYERQYDSDSE-IERRFDIFRNNLKTIDYYTKHEQGTATYGVNRFADMTDSE--F 136
+D + +YE+ D E +E D N+ + Y KH ++ +
Sbjct: 24 QDLLDKYEKDVDKRIEDLENLLDQLANSTSSAHQYVKH---IKDSLRGDQKQAQPNDNIY 80
Query: 137 NHGLSSLD--WEQI-ENLKSTFET 157
N SL E I E +T E+
Sbjct: 81 NAYSKSLRKMIEYILETKINTQES 104
>gnl|CDD|219135 pfam06684, AA_synth, Amino acid synthesis. This family of proteins
is structurally similar to proteins with the Bacillus
chorismate mutase-like (BCM-like) fold. This structure,
combined with its genomic context, suggest that it has a
role in amino acid synthesis.
Length = 175
Score = 28.3 bits (64), Expect = 3.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 12 GKASVRGLTFQYEAEWASGCVHTYLGWHPR 41
GKA++ G E E AS HT G R
Sbjct: 76 GKAAIVGT--DGELEHASALWHTRFGNAMR 103
>gnl|CDD|200454 cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic domain found in
bacterial Alpha-amylases (also called
1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC
3.2.1.1) catalyzes the hydrolysis of alpha-(1,4)
glycosidic linkages of glycogen, starch, related
polysaccharides, and some oligosaccharides. This group
includes Firmicutes, Proteobacteria, Actinobacteria, and
Cyanobacteria. The Alpha-amylase family comprises the
largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 352
Score = 27.6 bits (62), Expect = 6.6
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 123 YGVNRFADMTDSEFNHGLSSLDWEQIENL-KSTFETYSFNSSNSYGLAESINYKDKGKVL 181
YG+ D+ FNH + + IE+L + + F+ + +G N+ D+
Sbjct: 80 YGIKIIVDVV---FNHMAN--EGSAIEDLWYPSADIELFSPEDFHGNGGISNWNDRW--- 131
Query: 182 PKVQDQHLCG 191
+V L G
Sbjct: 132 -QVTQGRLGG 140
>gnl|CDD|220906 pfam10926, DUF2800, Protein of unknown function (DUF2800). This is
a family of uncharacterized proteins found in bacteria
and viruses. Some members of this family are annotated
as being Phi APSE P51-like proteins.
Length = 363
Score = 27.7 bits (62), Expect = 6.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 61 SEEASTFDLEEFLDHGNQFKDFVRE-YERQYDSDSEIERRFDI 102
SE + EE ++ ++ DFVRE E D IE+R D
Sbjct: 61 SEADGEYVDEEMAEYVQEYVDFVREQIELAKDGVLLIEQRVDF 103
>gnl|CDD|200235 TIGR03033, phage_rel_nuc, putative phage-type endonuclease.
Members of this protein family are found often in phage
genomes and in prokaryotic genomes in uncharacterized
regions that resemble integrated prophage regions.
Length = 153
Score = 27.0 bits (60), Expect = 7.0
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 64 ASTFDLEEFLDHGNQFKDFVREYERQ 89
D+ E + HG + + RE R
Sbjct: 45 VEPEDMNEAMYHGVKLEPEAREAFRD 70
>gnl|CDD|225091 COG2180, NarJ, Nitrate reductase delta subunit [Energy production
and conversion].
Length = 179
Score = 26.9 bits (60), Expect = 9.6
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 70 EEFLDHGNQFKDFVREYERQYDSDSEIERRFDIFRNNLKTIDYYTKHEQGTATYGVNRFA 129
EE + + E E F + L+T D + T+ R
Sbjct: 19 EELWEP-------LEELEALIAVLPPAAELLGEFLDELRTADLLAAQAEYVETFDRGRRT 71
Query: 130 DMTDSEFNHGLSSLDWEQIENLKSTFETYSFN 161
+ + HG S + + +L T+E Y
Sbjct: 72 SLYLTYHVHGESRDRGQAMLDLLQTYEKYGLE 103
>gnl|CDD|216221 pfam00971, EIAV_GP90, EIAV coat protein, gp90. Equine infectious
anaemia (EIAV). EIAV belongs to the family Retroviridae.
EIAV gp90 is hypervariable in the carboxyl-end region
and more stable in the amino-end region. This
variability is a pathogenicity factor that allows the
evasion of the host's immune response.
Length = 385
Score = 27.3 bits (60), Expect = 9.6
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 18/120 (15%)
Query: 102 IFRNNLKTIDYYTKHEQGTATYGVNRFADMTDSEFNHGLSSLDWEQIENLKSTFETYSFN 161
I++++ D+ +++ + N F + ++ G L+ Q EN K+ +
Sbjct: 123 IYKSSCTDSDHCQEYQCKKVNFNANSFYPVNNTTEYWGFKWLECNQTENFKTILVPEN-- 180
Query: 162 SSNSYGLAESINYKDKGKVLPKVQDQHLCGSCWAHSAVACLESAYAIKHNELIELSKQPP 221
E +N D +PK C WA ++ Y I I L QPP
Sbjct: 181 --------EMVNINDSDTWIPKG-----CNETWARVKRCPIDILYGIHP---IRLCVQPP 224
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.409
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,048,180
Number of extensions: 1187351
Number of successful extensions: 1013
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1008
Number of HSP's successfully gapped: 31
Length of query: 263
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 168
Effective length of database: 6,723,972
Effective search space: 1129627296
Effective search space used: 1129627296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)