BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14863
(319 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2
Length = 2839
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 113/147 (76%), Gaps = 2/147 (1%)
Query: 51 RLLTSILGYFYVSL-LVPELIDMVLDSFLQRSLESGVNSTVVEILADTAVALASANVQLV 109
++ SI + SL + +L+D+VLDSF++ S G+ S E++ADTAVALAS NV+LV
Sbjct: 1987 QMYPSIQAKIWGSLGQITDLLDVVLDSFIKTSATGGLGSIKAEVMADTAVALASGNVKLV 2046
Query: 110 AKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLMLSFNNCLDVVRHLPYLLHI 169
+ K+I R+C++++KT +P P+LEQH +W+DIAI+ARY+LMLSFNN LDV HLPYL H+
Sbjct: 2047 SSKVIGRMCKIIDKTCLSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHLPYLFHV 2106
Query: 170 VTMLVNTGPLNMRCSSHGLVIR-MHTL 195
VT LV TGPL++R S+HGLVI +H+L
Sbjct: 2107 VTFLVATGPLSLRASTHGLVINIIHSL 2133
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 62/71 (87%)
Query: 248 ITPMPSLEQHTLWNDIAIMARYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSS 307
++P P+LEQH +W+DIAI+ARY+LMLSFNN LDV HLPYL H+VT LV TGPL++R S+
Sbjct: 2063 LSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHLPYLFHVVTFLVATGPLSLRAST 2122
Query: 308 HGLVINIIHSL 318
HGLVINIIHSL
Sbjct: 2123 HGLVINIIHSL 2133
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 56/76 (73%)
Query: 179 LNMRCSSHGLVIRMHTLWNDIAIMARYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLN 238
++ C S + H +W+DIAI+ARY+LMLSFNN LDV HLPYL H+VT LV TGPL+
Sbjct: 2058 IDKTCLSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHLPYLFHVVTFLVATGPLS 2117
Query: 239 MRCSSHGLVITPMPSL 254
+R S+HGLVI + SL
Sbjct: 2118 LRASTHGLVINIIHSL 2133
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 43/57 (75%)
Query: 1 MESREPLLWHFKQLDGAVGLSFKANFHFALVGHLMKGYRHPNSTTITRTTRLLTSIL 57
M R PL WH KQ+D VGL+F +NF+FALVGHL+KGYRHP+ + RT R+L ++L
Sbjct: 2361 MAIRNPLEWHCKQMDHFVGLNFNSNFNFALVGHLLKGYRHPSPAIVARTVRILHTLL 2417
>sp|P97526|NF1_RAT Neurofibromin OS=Rattus norvegicus GN=Nf1 PE=1 SV=1
Length = 2820
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 113/147 (76%), Gaps = 2/147 (1%)
Query: 51 RLLTSILGYFYVSL-LVPELIDMVLDSFLQRSLESGVNSTVVEILADTAVALASANVQLV 109
++ SI + SL + +L+D+VLDSF++ S G+ S E++ADTAVALAS NV+LV
Sbjct: 1968 QMYPSIQAKIWGSLGQITDLLDVVLDSFIKTSATGGLGSIKAEVMADTAVALASGNVKLV 2027
Query: 110 AKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLMLSFNNCLDVVRHLPYLLHI 169
+ K+I R+C++++KT +P P+LEQH +W+DIAI+ARY+LMLSFNN LDV HLPYL H+
Sbjct: 2028 SSKVIGRMCKIIDKTCLSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHLPYLFHV 2087
Query: 170 VTMLVNTGPLNMRCSSHGLVIR-MHTL 195
VT LV TGPL++R S+HGLVI +H+L
Sbjct: 2088 VTFLVATGPLSLRASTHGLVINIIHSL 2114
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 62/71 (87%)
Query: 248 ITPMPSLEQHTLWNDIAIMARYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSS 307
++P P+LEQH +W+DIAI+ARY+LMLSFNN LDV HLPYL H+VT LV TGPL++R S+
Sbjct: 2044 LSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHLPYLFHVVTFLVATGPLSLRAST 2103
Query: 308 HGLVINIIHSL 318
HGLVINIIHSL
Sbjct: 2104 HGLVINIIHSL 2114
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 56/76 (73%)
Query: 179 LNMRCSSHGLVIRMHTLWNDIAIMARYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLN 238
++ C S + H +W+DIAI+ARY+LMLSFNN LDV HLPYL H+VT LV TGPL+
Sbjct: 2039 IDKTCLSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHLPYLFHVVTFLVATGPLS 2098
Query: 239 MRCSSHGLVITPMPSL 254
+R S+HGLVI + SL
Sbjct: 2099 LRASTHGLVINIIHSL 2114
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 43/57 (75%)
Query: 1 MESREPLLWHFKQLDGAVGLSFKANFHFALVGHLMKGYRHPNSTTITRTTRLLTSIL 57
M R PL WH KQ+D VGL+F +NF+FALVGHL+KGYRHP+ + RT R+L ++L
Sbjct: 2342 MAIRNPLEWHCKQMDHFVGLNFNSNFNFALVGHLLKGYRHPSPAIVARTVRILHTLL 2398
>sp|Q04690|NF1_MOUSE Neurofibromin OS=Mus musculus GN=Nf1 PE=1 SV=1
Length = 2841
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 113/147 (76%), Gaps = 2/147 (1%)
Query: 51 RLLTSILGYFYVSL-LVPELIDMVLDSFLQRSLESGVNSTVVEILADTAVALASANVQLV 109
++ SI + SL + +L+D+VLDSF++ S G+ S E++ADTAVALAS NV+LV
Sbjct: 1989 QMYPSIQAKIWGSLGQITDLLDVVLDSFIKTSATGGLGSIKAEVMADTAVALASGNVKLV 2048
Query: 110 AKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLMLSFNNCLDVVRHLPYLLHI 169
+ K+I R+C++++KT +P P+LEQH +W+DIAI+ARY+LMLSFNN LDV HLPYL H+
Sbjct: 2049 SSKVIGRMCKIIDKTCLSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHLPYLFHV 2108
Query: 170 VTMLVNTGPLNMRCSSHGLVIR-MHTL 195
VT LV TGPL++R S+HGL+I +H+L
Sbjct: 2109 VTFLVATGPLSLRASTHGLLINIIHSL 2135
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 62/71 (87%)
Query: 248 ITPMPSLEQHTLWNDIAIMARYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSS 307
++P P+LEQH +W+DIAI+ARY+LMLSFNN LDV HLPYL H+VT LV TGPL++R S+
Sbjct: 2065 LSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHLPYLFHVVTFLVATGPLSLRAST 2124
Query: 308 HGLVINIIHSL 318
HGL+INIIHSL
Sbjct: 2125 HGLLINIIHSL 2135
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 56/76 (73%)
Query: 179 LNMRCSSHGLVIRMHTLWNDIAIMARYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLN 238
++ C S + H +W+DIAI+ARY+LMLSFNN LDV HLPYL H+VT LV TGPL+
Sbjct: 2060 IDKTCLSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHLPYLFHVVTFLVATGPLS 2119
Query: 239 MRCSSHGLVITPMPSL 254
+R S+HGL+I + SL
Sbjct: 2120 LRASTHGLLINIIHSL 2135
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 43/57 (75%)
Query: 1 MESREPLLWHFKQLDGAVGLSFKANFHFALVGHLMKGYRHPNSTTITRTTRLLTSIL 57
M R PL WH KQ+D VGL+F +NF+FALVGHL+KGYRHP+ + RT R+L ++L
Sbjct: 2363 MAIRNPLEWHCKQMDHFVGLNFNSNFNFALVGHLLKGYRHPSPAIVARTVRILHTLL 2419
>sp|P19158|IRA2_YEAST Inhibitory regulator protein IRA2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=IRA2 PE=1 SV=2
Length = 3079
Score = 49.7 bits (117), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 251 MPSLEQHTL---WNDIAIMARYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSS 307
+PSL+ + W+++ I+ + + + F L V +LP +L IV++L++ GP +R S
Sbjct: 2530 LPSLKLEAMTQSWSELTILVKISIHVFFETSLLVQMYLPEILFIVSLLIDVGPRELRSSL 2589
Query: 308 HGLVINIIHSL 318
H L++N+ HSL
Sbjct: 2590 HQLLMNVCHSL 2600
Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 28/149 (18%)
Query: 61 YVSLLVPE---LIDMVLDSFLQRSLESGVNS-------TVVEILADTAVALASANVQLVA 110
YV LL+ + L D+++D + +LE + +++ +L T VA +
Sbjct: 2466 YVWLLLLDDGRLTDIIVDEVINHALERDSENRDWKKTISLLTVLPTTEVA------NNII 2519
Query: 111 KKIIVRLCRVLEKTGATPMPSLEQHTL---WNDIAIMARYLLMLSFNNCLDVVRHLPYLL 167
+KI+ ++ L PSL+ + W+++ I+ + + + F L V +LP +L
Sbjct: 2520 QKILAKIRSFL--------PSLKLEAMTQSWSELTILVKISIHVFFETSLLVQMYLPEIL 2571
Query: 168 HIVTMLVNTGPLNMRCSSHGLVIRM-HTL 195
IV++L++ GP +R S H L++ + H+L
Sbjct: 2572 FIVSLLIDVGPRELRSSLHQLLMNVCHSL 2600
Score = 40.0 bits (92), Expect = 0.022, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 192 MHTLWNDIAIMARYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSSHGLVITPM 251
M W+++ I+ + + + F L V +LP +L IV++L++ GP +R S H L++
Sbjct: 2538 MTQSWSELTILVKISIHVFFETSLLVQMYLPEILFIVSLLIDVGPRELRSSLHQLLMNVC 2597
Query: 252 PSL 254
SL
Sbjct: 2598 HSL 2600
>sp|P35608|NF1_CHICK Neurofibromin (Fragment) OS=Gallus gallus GN=NF1 PE=2 SV=1
Length = 270
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 25/32 (78%)
Query: 1 MESREPLLWHFKQLDGAVGLSFKANFHFALVG 32
ME R PL WH KQ+D VGL+F +NF+FALVG
Sbjct: 236 MEIRRPLEWHCKQMDHFVGLNFNSNFNFALVG 267
>sp|P18963|IRA1_YEAST Inhibitory regulator protein IRA1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=IRA1 PE=1 SV=2
Length = 3092
Score = 40.8 bits (94), Expect = 0.012, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 38/59 (64%)
Query: 260 WNDIAIMARYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSSHGLVINIIHSL 318
W+++ I+++ + + F + L +LP +L V++L++ GP +R S + L++N+ HSL
Sbjct: 2554 WSELTILSKISVSIFFESPLLSQMYLPEILFAVSLLIDVGPSEIRVSLYELLMNVCHSL 2612
Score = 36.2 bits (82), Expect = 0.32, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Query: 118 CRVLEK---TGATPMPSL----EQHTLWNDIAIMARYLLMLSFNNCLDVVRHLPYLLHIV 170
C+V+EK + +PSL H+ W+++ I+++ + + F + L +LP +L V
Sbjct: 2528 CQVIEKLINMIKSFLPSLAVEASAHS-WSELTILSKISVSIFFESPLLSQMYLPEILFAV 2586
Query: 171 TMLVNTGPLNMRCSSHGLVIRM-HTLWNDIAIMAR 204
++L++ GP +R S + L++ + H+L N+ ++ R
Sbjct: 2587 SLLIDVGPSEIRVSLYELLMNVCHSLTNNESLPER 2621
Score = 32.7 bits (73), Expect = 3.7, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 196 WNDIAIMARYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSSHGLVITPMPSL 254
W+++ I+++ + + F + L +LP +L V++L++ GP +R S + L++ SL
Sbjct: 2554 WSELTILSKISVSIFFESPLLSQMYLPEILFAVSLLIDVGPSEIRVSLYELLMNVCHSL 2612
>sp|Q313H2|DXR_DESDG 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfovibrio
desulfuricans (strain G20) GN=dxr PE=3 SV=1
Length = 407
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 51 RLLTSILGYFYVSLLVPELIDMVLDSFLQRSLESGVNSTVVEILADTAVALASANVQLVA 110
R+ T GY +++ L PE D VL + + +G+ +TV A +ALA+ ++A
Sbjct: 93 RIHTGQEGYEFLAAL-PE-ADCVLSAQVG---AAGLRATVAAARAGKTIALANKESLVLA 147
Query: 111 KKIIVRLCRVLEKTGATPMPSLEQHTL------WNDIAIMARYLLMLS 152
+I RLC +TGA+ +P +H +D A M R +L S
Sbjct: 148 GGLIRRLC---HETGASVLPVDSEHNAIFQALQGHDAAQMRRIILTAS 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,767,849
Number of Sequences: 539616
Number of extensions: 4103303
Number of successful extensions: 10937
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 10918
Number of HSP's gapped (non-prelim): 25
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)