Query psy14863
Match_columns 319
No_of_seqs 183 out of 204
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 22:44:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zyq_A Hepatocyte growth facto 64.3 25 0.00085 31.3 8.2 119 73-202 8-127 (226)
2 3ldz_A STAM-1, signal transduc 52.7 40 0.0014 27.8 7.0 117 74-202 6-123 (140)
3 1x5b_A Signal transducing adap 46.9 1.1E+02 0.0038 25.8 9.0 118 74-202 16-134 (163)
4 4fdd_A Transportin-1; heat rep 31.8 4.1E+02 0.014 26.7 18.2 50 263-316 734-784 (852)
5 1dvp_A HRS, hepatocyte growth 24.1 3.5E+02 0.012 23.4 11.0 135 74-222 6-141 (220)
6 1wa5_C Importin alpha RE-expor 23.6 4.9E+02 0.017 26.9 11.0 122 25-147 492-629 (960)
7 3g2s_A C-terminal fragment of 22.1 3.4E+02 0.012 22.5 10.6 118 74-199 12-132 (149)
8 1elk_A Target of MYB1; superhe 16.6 2.2E+02 0.0074 23.7 5.5 122 73-202 16-139 (157)
9 1vsy_5 Proteasome activator BL 15.4 5.5E+02 0.019 27.7 9.4 230 41-311 722-961 (997)
10 1h2v_C 80 kDa nuclear CAP bind 14.9 1E+03 0.034 24.9 12.4 76 66-153 42-117 (771)
No 1
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=64.26 E-value=25 Score=31.26 Aligned_cols=119 Identities=11% Similarity=0.082 Sum_probs=76.0
Q ss_pred HHHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcCCCCCCccccCChHHHHHHHHHHHHhh
Q psy14863 73 VLDSFLQRSLESGVNSTVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLMLS 152 (319)
Q Consensus 73 vldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~R~~l~Ls 152 (319)
-+|+.|..|.+....+++|+.+.++.=.+.+.... +...+.-|+|-|+ +.+|.. +-..+.=+..+++=|-.-
T Consensus 8 ~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~--~k~a~ral~krl~--~~n~~v---~l~aL~LLe~~vkNcG~~- 79 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETDWESILQICDLIRQGDTQ--AKYAVNSIKKKVN--DKNPHV---ALYALEVMESVVKNCGQT- 79 (226)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSC--HHHHHHHHHHHHT--CSSHHH---HHHHHHHHHHHHHHHCHH-
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHc--CCCHHH---HHHHHHHHHHHHHhcchH-
Confidence 47899999999999999999666555444433221 3455666777666 344442 222333333444433332
Q ss_pred ccchhhHhhhhhHHHHHHHHhhccCCchhHHhHhHhHHHH-hhhcccccHH
Q psy14863 153 FNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSSHGLVIRM-HTLWNDIAIM 202 (319)
Q Consensus 153 F~n~l~aq~yLPEifhIVTLLi~~Gp~~vR~svhgLliNt-hSL~t~~~L~ 202 (319)
|..-+-...|+-|+.-++ -..-+..||.-+-.++-+- .++...+.++
T Consensus 80 f~~eias~~fl~~l~~l~---~~~~~~~Vk~kil~li~~W~~~f~~~~~l~ 127 (226)
T 3zyq_A 80 VHDEVANKQTMEELKDLL---KRQVEVNVRNKILYLIQAWAHAFRNEPKYK 127 (226)
T ss_dssp HHHHHSSHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHTTTCGGGH
T ss_pred HHHhhccHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHhCCCcchH
Confidence 224455666888876665 3556788999999999988 8887777765
No 2
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=52.65 E-value=40 Score=27.80 Aligned_cols=117 Identities=9% Similarity=0.046 Sum_probs=69.6
Q ss_pred HHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcCCCCCCccccCChHHHHHHHHHHHHhhc
Q psy14863 74 LDSFLQRSLESGVNSTVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLMLSF 153 (319)
Q Consensus 74 ldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~R~~l~LsF 153 (319)
+|+.|..|.+....+++|+.+.++.=.+.+-.. -+...+.-++|-|+ +.+|.. +-..+.=+-.+++=|- -.|
T Consensus 6 ~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~--~~k~a~rai~Krl~--~~n~~~---ql~AL~LLe~~vkNcG-~~f 77 (140)
T 3ldz_A 6 FDQDVEKATSEMNTAEDWGLILDICDKVGQSRT--GPKDCLRSIMRRVN--HKDPHV---AMQALTLLGACVSNCG-KIF 77 (140)
T ss_dssp THHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTT--HHHHHHHHHHHHHT--CSSHHH---HHHHHHHHHHHHHHSC-HHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCc--CHHHHHHHHHHHHc--CCChHH---HHHHHHHHHHHHHhcC-HHH
Confidence 478999999999999999965555444443321 23455666676666 333331 1111222222222111 112
Q ss_pred cchhhHhhhhhHHHHHHHHhhccCCchhHHhHhHhHHHH-hhhcccccHH
Q psy14863 154 NNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSSHGLVIRM-HTLWNDIAIM 202 (319)
Q Consensus 154 ~n~l~aq~yLPEifhIVTLLi~~Gp~~vR~svhgLliNt-hSL~t~~~L~ 202 (319)
..-+-...|+-|+.-++. ..+..||.-+-.++-.- .++...+.++
T Consensus 78 ~~evas~~Fl~el~~l~~----~~~~~Vk~kil~li~~W~~~f~~~~~l~ 123 (140)
T 3ldz_A 78 HLEVCSRDFASEVSNVLN----KGHPKVCEKLKALMVEWTDEFKNDPQLS 123 (140)
T ss_dssp HHHHSSHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHHHTTCGGGT
T ss_pred HHHHhhHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHhCCCCCch
Confidence 233344668888876664 45778999999988888 8887766655
No 3
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=46.88 E-value=1.1e+02 Score=25.81 Aligned_cols=118 Identities=8% Similarity=0.019 Sum_probs=66.6
Q ss_pred HHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcCCCCCCccccCChHHHHHHHHHHHHhhc
Q psy14863 74 LDSFLQRSLESGVNSTVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLMLSF 153 (319)
Q Consensus 74 ldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~R~~l~LsF 153 (319)
+|+.|..|.+....++||+.+.++.--+.+-.. -+...+.-|+|-|+ +.+|... -....=+-.+++=|- --|
T Consensus 16 ~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~--~~keA~ral~krl~--~~n~~vq---l~AL~LLd~~vkNcG-~~F 87 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTEDWSLIMDICDKVGSTPN--GAKDCLKAIMKRVN--HKVPHVA---LQALTLLGACVANCG-KIF 87 (163)
T ss_dssp THHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHT--CSSHHHH---HHHHHHHHHHHHHTC-HHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHc--CCCHHHH---HHHHHHHHHHHHHhh-HHH
Confidence 578999999999999999965554433322211 12345555666565 2333211 111111112222111 112
Q ss_pred cchhhHhhhhhHHHHHHHHhhccCCchhHHhHhHhHHHH-hhhcccccHH
Q psy14863 154 NNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSSHGLVIRM-HTLWNDIAIM 202 (319)
Q Consensus 154 ~n~l~aq~yLPEifhIVTLLi~~Gp~~vR~svhgLliNt-hSL~t~~~L~ 202 (319)
...+-...|+-|+.-++. ...+..||.-+-.++-.- +++...+.+.
T Consensus 88 h~evas~~Fl~el~~l~~---~~~~~~Vk~kil~li~~W~~~f~~~~~l~ 134 (163)
T 1x5b_A 88 HLEVCSRDFATEVRAVIK---NKAHPKVCEKLKSLMVEWSEEFQKDPQFS 134 (163)
T ss_dssp HHHHTSHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHHTTTCSTTH
T ss_pred HHHHhhHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 233344558888776664 446678999999888888 8877666554
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=31.76 E-value=4.1e+02 Score=26.69 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcccchhhhhhhhHHHHH-HHHHhccCchhHHHHHHHHHHHHHh
Q psy14863 263 IAIMARYLLMLSFNNCLDVVRHLPYLLHI-VTMLVNTGPLNMRCSSHGLVINIIH 316 (319)
Q Consensus 263 i~iL~r~~l~lsF~~~~~~q~~lPel~hi-vtlL~~~Gp~~~R~svh~l~iN~~h 316 (319)
+..+.|++.. ++-.+.-|+|++.|. +.-|-..+..+-|.+.+.-+.++++
T Consensus 734 ~~~igrl~~~----~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~ 784 (852)
T 4fdd_A 734 AITIGRLGYV----CPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMIS 784 (852)
T ss_dssp HHHHHHHHHH----CHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----CHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 4556676655 444556788998886 4556678888888888887777765
No 5
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.13 E-value=3.5e+02 Score=23.36 Aligned_cols=135 Identities=8% Similarity=-0.040 Sum_probs=76.5
Q ss_pred HHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcCCCCCCccccCChHHHHHHHHHHHHhhc
Q psy14863 74 LDSFLQRSLESGVNSTVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLMLSF 153 (319)
Q Consensus 74 ldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~R~~l~LsF 153 (319)
+|+.|..|.+....++||..+.++.-.+.+... -+...+.-|+|-|+ +.+|...+ ....=+-.+++=|-.- |
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~--~~k~a~r~l~krl~--~~n~~~~l---~aL~Lle~~vkNcG~~-f 77 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDV--TPKNAFAAIKKKMN--SPNPHSSC---YSLLVLESIVKNCGAP-V 77 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHT--CSSHHHHH---HHHHHHHHHHHHSHHH-H
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCc--CHHHHHHHHHHHHc--CCCHHHHH---HHHHHHHHHHhccCHH-H
Confidence 789999999999999999966555444433221 12345555666555 33443211 1122223333333221 2
Q ss_pred cchhhHhhhhhHHHHHHHHhhccCCchhHHhHhHhHHHH-hhhcccccHHHHHHHHHHhhhhhhhccccc
Q psy14863 154 NNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSSHGLVIRM-HTLWNDIAIMARYLLMLSFNNCLDVVRHLP 222 (319)
Q Consensus 154 ~n~l~aq~yLPEifhIVTLLi~~Gp~~vR~svhgLliNt-hSL~t~~~L~~~~~l~~~~~~~~d~~~~~~ 222 (319)
...+-...||-|+.-++ -+..+..+|..+-+++-.- +++...+.+. .+..+...-..+|-..|
T Consensus 78 ~~eva~~~fl~~l~~l~---~~~~~~~Vk~kil~li~~W~~~f~~~~~~~---~i~~~y~~Lk~~G~~FP 141 (220)
T 1dvp_A 78 HEEVFTKENCEMFSSFL---ESTPHENVRQKMLELVQTWAYAFRSSDKYQ---AIKDTMTILKAKGHTFP 141 (220)
T ss_dssp HHHHSSHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHHHHTTTCSSCC---HHHHHHHHHHHTTCCCC
T ss_pred HHHHHhHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHHHHHhccchHHH---HHHHHHHHHhhcCcccc
Confidence 23344445888876554 3566789999999888888 8877655443 23333433444444444
No 6
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=23.61 E-value=4.9e+02 Score=26.85 Aligned_cols=122 Identities=11% Similarity=0.143 Sum_probs=62.9
Q ss_pred chhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHH------Hhh---chhhhHHHHHHHHHHHhhhcC---C---CC-
Q psy14863 25 NFHFALVGHLMKGYRHPNSTTITRTTRLLTSILGYFY------VSL---LVPELIDMVLDSFLQRSLESG---V---NS- 88 (319)
Q Consensus 25 ~~~~~~v~~~~~~~~~~~~~tISRi~RlL~~Ll~~~w------~l~---~~~~Li~ivldE~I~~Ald~g---~---gs- 88 (319)
+++-.++..+++++.++++..-.+....|..+...-- +.+ .....++-+++.+.+..-+.| . +.
T Consensus 492 ~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 4566666777788876655444455444444432100 000 112334556666655433322 0 11
Q ss_pred cchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcCCCCCCccccCChHHHHHHHHH
Q psy14863 89 TVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARY 147 (319)
Q Consensus 89 ~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~R~ 147 (319)
.=.+.+..++.+++. .+...+..++.+|.+.++++...|......+....-|+.+++.
T Consensus 572 ~l~~al~~vv~~~~~-~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 572 FLMRSIFRVLQTSED-SIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp HHHHHHHHHHHHHTT-TTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 112455555444432 2223456888899988888766666544445556556666554
No 7
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=22.13 E-value=3.4e+02 Score=22.53 Aligned_cols=118 Identities=10% Similarity=0.044 Sum_probs=70.3
Q ss_pred HHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcCCCCCCccccCChHHHHHHHHHHHHhhc
Q psy14863 74 LDSFLQRSLESGVNSTVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLMLSF 153 (319)
Q Consensus 74 ldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~R~~l~LsF 153 (319)
+|+.|..|.+....+++|+.+.++.=.+.+-.. -+...+.-|+|-|+ +.+|...+ ..+.=+-.+++=|-. -|
T Consensus 12 ~~~~IekATs~~l~~~dw~~ileicD~I~~~~~--~pk~a~ral~krl~--~~n~~v~l---~AL~LLe~cvkNCG~-~f 83 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWASINGFCEQLNEDFE--GPPLATRLLAHKIQ--SPQEWEAI---QALTVLETCMKSCGK-RF 83 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSS--HHHHHHHHHHHHHT--CSSHHHHH---HHHHHHHHHHHHCCH-HH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCC--cHHHHHHHHHHHHc--CCCHHHHH---HHHHHHHHHHHhcCH-HH
Confidence 789999999999999999966655544543331 23455666666665 34443221 122222222222211 23
Q ss_pred cchhhHhhhhhHHHHHHHH--hhccCCchhHHhHhHhHHHH-hhhcccc
Q psy14863 154 NNCLDVVRHLPYLLHIVTM--LVNTGPLNMRCSSHGLVIRM-HTLWNDI 199 (319)
Q Consensus 154 ~n~l~aq~yLPEifhIVTL--Li~~Gp~~vR~svhgLliNt-hSL~t~~ 199 (319)
..-+-...|+-|+.-+++= .-+.-|..||.-+-.++-.- .++...+
T Consensus 84 h~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p 132 (149)
T 3g2s_A 84 HDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEV 132 (149)
T ss_dssp HHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 3444556688887655541 12346788999999888888 8776543
No 8
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=16.63 E-value=2.2e+02 Score=23.70 Aligned_cols=122 Identities=6% Similarity=0.011 Sum_probs=62.4
Q ss_pred HHHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcCCCCCCccccCChHHHHHHHHHHHHhh
Q psy14863 73 VLDSFLQRSLESGVNSTVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLMLS 152 (319)
Q Consensus 73 vldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~R~~l~Ls 152 (319)
-+++.|..|.+....++||+.+.++.-.+.+... -+...+.-|+|-|+. +.+|... -....=+-.+++=|- --
T Consensus 16 ~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~--~~k~a~ral~krl~~-~~n~~v~---l~AL~LLd~~vkNcG-~~ 88 (157)
T 1elk_A 16 PVGQRIEKATDGSLQSEDWALNMEICDIINETEE--GPKDALRAVKKRIVG-NKNFHEV---MLALTVLETCVKNCG-HR 88 (157)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHTT-CCCHHHH---HHHHHHHHHHHHHSC-HH
T ss_pred HHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCc--cHHHHHHHHHHHhcc-CCCHHHH---HHHHHHHHHHHHHhC-HH
Confidence 4789999999999999999965555444432221 124555556665541 1122100 011111111111111 11
Q ss_pred ccchhhHhhhhhH-HHHHHHHhhccCCchhHHhHhHhHHHH-hhhcccccHH
Q psy14863 153 FNNCLDVVRHLPY-LLHIVTMLVNTGPLNMRCSSHGLVIRM-HTLWNDIAIM 202 (319)
Q Consensus 153 F~n~l~aq~yLPE-ifhIVTLLi~~Gp~~vR~svhgLliNt-hSL~t~~~L~ 202 (319)
|...+-...||-| +.-++.= -..-|..||.-+-.++-.- +++-..+.++
T Consensus 89 fh~eva~~~fl~e~Lvk~~~~-k~~~~~~Vk~kil~li~~W~~~f~~~p~l~ 139 (157)
T 1elk_A 89 FHVLVASQDFVESVLVRTILP-KNNPPTIVHDKVLNLIQSWADAFRSSPDLT 139 (157)
T ss_dssp HHHHHTSHHHHHHHTHHHHST-TTCCCHHHHHHHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHhhHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHHHHHHcCCCcchH
Confidence 2233444557777 4443310 1123468888888888888 7765444443
No 9
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=15.36 E-value=5.5e+02 Score=27.69 Aligned_cols=230 Identities=10% Similarity=0.037 Sum_probs=111.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhchh---hhHHHHHHHHHHHhhhcCCCCcchHH--H-H-HHHHHhhcchhHHHHHHH
Q psy14863 41 PNSTTITRTTRLLTSILGYFYVSLLVP---ELIDMVLDSFLQRSLESGVNSTVVEI--L-A-DTAVALASANVQLVAKKI 113 (319)
Q Consensus 41 ~~~~tISRi~RlL~~Ll~~~w~l~~~~---~Li~ivldE~I~~Ald~g~gs~~~Ei--i-a-~i~vsLsS~~v~lV~gkI 113 (319)
|++..-++.++.+.+++.+++..+..+ .+.+.+.+=++-..+.--..+.+.|. + | .++..++..... ...
T Consensus 722 ~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~---~~~ 798 (997)
T 1vsy_5 722 PQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIR---KNH 798 (997)
T ss_dssp STTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCC---HHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCC---HHH
Confidence 333333455666667766666654221 12222222122222222233344451 1 1 234445444332 455
Q ss_pred HHHHHHHHhhhcCCCCCCccccCChHHHHHHHHHHHHhhccchhh-HhhhhhHHHHHHHHhhccCC-chhHHhHhHhHHH
Q psy14863 114 IVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLMLSFNNCLD-VVRHLPYLLHIVTMLVNTGP-LNMRCSSHGLVIR 191 (319)
Q Consensus 114 IsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~R~~l~LsF~n~l~-aq~yLPEifhIVTLLi~~Gp-~~vR~svhgLliN 191 (319)
+..+.++|.++ ...+++| --...++++-.+.|.|... ...--+.|+-+|.=+..-.. .|||..==.-+
T Consensus 799 ~~~~l~~l~~~-------~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tL-- 868 (997)
T 1vsy_5 799 VAAIVDYVCSS-------NVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASIL-- 868 (997)
T ss_dssp HHHHHHHSSCT-------TTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHH-------HhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH--
Confidence 66666666532 2225789 7777777876777754432 11111566766666555666 88887544222
Q ss_pred Hhhhcccc-cHHHHHHHHHHhhhhhhhcccccchhheeeeeecccchhhhhhccCCCCCCCCcccccCCchHHHHHHHHH
Q psy14863 192 MHTLWNDI-AIMARYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSSHGLVITPMPSLEQHTLWNDIAIMARYL 270 (319)
Q Consensus 192 thSL~t~~-~L~~~~~l~~~~~~~~d~~~~~~~~l~~~~~~~~~~lsrlRkai~~ts~~p~~~L~~h~~W~Ei~iL~r~~ 270 (319)
-++..|. +..... +.+..|. ++ .+. -+...++||...++- ...| =+||+=-+
T Consensus 869 -sgll~c~~~~~~~~--~li~~f~-~~--~~~----------~~~~~~~~~~~~~~~------~~rH-----~aVLgL~A 921 (997)
T 1vsy_5 869 -SDIVHNWKEEQPLL--SLIERFA-KG--LDV----------NKYTSKERQKLSKTD------IKIH-----GNVLGLGA 921 (997)
T ss_dssp -HHHHHSCCSHHHHH--HHHHHHT-TS--STT----------TSSCHHHHHHHHHHC------HHHH-----HHHHHHHH
T ss_pred -HHHHHcCCchhhHH--HHHHHHH-HH--Hhh----------cccccccccccchHH------HHHH-----HHHHHHHH
Confidence 3333333 322221 1112222 11 100 001111233221110 1222 46788888
Q ss_pred HHHhcccchhhhhhhhHHHHHHHHHhccCchhHHHHHHHHH
Q psy14863 271 LMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSSHGLV 311 (319)
Q Consensus 271 l~lsF~~~~~~q~~lPel~hivtlL~~~Gp~~~R~svh~l~ 311 (319)
+..||-...+...++|+++-.++=-++. |..++.++=..+
T Consensus 922 lV~a~Py~vP~P~w~P~~l~~La~~~~~-~~~i~~tvk~tl 961 (997)
T 1vsy_5 922 IISAFPYVFPLPPWIPKNLSNLSSWART-SGMTGNAAKNTI 961 (997)
T ss_dssp HHTTCSCCSSCCTHHHHHHHHHHTTSSS-CSSHHHHTHHHH
T ss_pred HHhhCCCCCCCCcccHHHHHHHHHHhCC-CCchHHHHHHHH
Confidence 8899987777788999998666633322 555777765544
No 10
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=14.90 E-value=1e+03 Score=24.93 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=52.3
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcCCCCCCccccCChHHHHHHH
Q psy14863 66 VPELIDMVLDSFLQRSLESGVNSTVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMA 145 (319)
Q Consensus 66 ~~~Li~ivldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~ 145 (319)
.++.-+.+++.+++.+.+.. .+..+.|.++.-+.+-+-+ +++.++.|+...+.+.- +...|.+...++
T Consensus 42 l~~~r~~i~~~l~~~~~~~P---~Kt~vyAaLVgllN~k~pe-~G~~lv~~l~~~f~~~l--------~~~~~~~~k~~l 109 (771)
T 1h2v_C 42 LPNYKSKILRLLCTVARLLP---EKLTIYTTLVGLLNARNYN-FGGEFVEAMIRQLKESL--------KANNYNEAVYLV 109 (771)
T ss_dssp HHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHH--------HTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCC---CcchHHHHHHHHHHcCChh-HHHHHHHHHHHHHHHHH--------HccChHHHHHHH
Confidence 45677788888888877653 2344655555555544544 77788888877766421 136899999999
Q ss_pred HHHHHhhc
Q psy14863 146 RYLLMLSF 153 (319)
Q Consensus 146 R~~l~LsF 153 (319)
||+..|.=
T Consensus 110 rFLa~L~n 117 (771)
T 1h2v_C 110 RFLSDLVN 117 (771)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99988865
Done!