Query psy14863
Match_columns 319
No_of_seqs 183 out of 204
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 22:44:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14863.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14863hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h2vc1 a.118.1.14 (C:29-290) 68.5 32 0.0023 29.0 13.5 137 66-214 33-175 (262)
2 d1juqa_ a.118.9.2 (A:) ADP-rib 25.8 50 0.0036 25.6 5.4 114 74-195 3-119 (151)
3 d1dvpa1 a.118.9.2 (A:1-145) Hr 25.7 1.3E+02 0.0093 22.7 9.8 115 74-202 6-124 (145)
4 d1mhqa_ a.118.9.2 (A:) ADP-rib 22.6 70 0.0051 24.4 5.7 114 74-195 2-118 (143)
5 d1r8ja1 a.186.1.1 (A:177-282) 14.3 1.3E+02 0.0094 22.6 5.1 46 38-86 3-52 (106)
6 d1uw4b_ a.118.1.14 (B:) Regula 9.9 4E+02 0.029 21.2 14.1 161 30-216 7-184 (248)
7 d1hf8a2 a.118.9.3 (A:19-149) C 9.9 1.9E+02 0.014 21.1 5.0 47 74-122 4-50 (131)
8 d1elka_ a.118.9.2 (A:) Tom1 pr 8.7 3.8E+02 0.028 20.1 11.3 115 73-202 12-135 (153)
9 d1ujka_ a.118.9.2 (A:) ADP-rib 7.8 4.1E+02 0.03 19.7 11.1 111 71-195 6-125 (145)
10 d1vpua_ g.34.1.1 (A:) HIV-1 VP 7.0 53 0.0038 21.4 0.3 24 70-93 3-27 (45)
No 1
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.50 E-value=32 Score=28.96 Aligned_cols=137 Identities=10% Similarity=0.112 Sum_probs=77.8
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcCCCCCCccccCChHHHHHHH
Q psy14863 66 VPELIDMVLDSFLQRSLESGVNSTVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMA 145 (319)
Q Consensus 66 ~~~Li~ivldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~ 145 (319)
.++..+.+++.+++.+.+.. ...-+.|-++.-+.+.+-+ +++.++.|+.+.+++.- +...|.++..++
T Consensus 33 l~~~~~~il~~l~~~~~~~P---~k~~~yA~Lv~llN~~~~e-~g~~~l~~~~~~f~~~l--------~~~~~~~~~~ll 100 (262)
T d1h2vc1 33 LPNYKSKILRLLCTVARLLP---EKLTIYTTLVGLLNARNYN-FGGEFVEAMIRQLKESL--------KANNYNEAVYLV 100 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHH--------HTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCc---chHHHHHHHHHHHccCcHH-HHHHHHHHHHHHHHHHH--------HhCCHHHHHHHH
Confidence 35567777777777777631 2334555554444444454 88899999888877522 224699999999
Q ss_pred HHHHHhhccchhhHhhhhhHHHHHHHHhhccCCchhHHhH--hHhHHHH----hhhcccccHHHHHHHHHHhhhh
Q psy14863 146 RYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSS--HGLVIRM----HTLWNDIAIMARYLLMLSFNNC 214 (319)
Q Consensus 146 R~~l~LsF~n~l~aq~yLPEifhIVTLLi~~Gp~~vR~sv--hgLliNt----hSL~t~~~L~~~~~l~~~~~~~ 214 (319)
||...|.=-.=+.....+.=+=-++....+.|....|+.- |-.+-+. +.+....+-..++.++..-+|.
T Consensus 101 rFla~L~n~~Vv~~~~i~~ll~~ll~~~~e~~~~~~~~d~~~~~vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~ 175 (262)
T d1h2vc1 101 RFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYL 175 (262)
T ss_dssp HHHHHHHHTTSBCHHHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCcHhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999994222223333333333334555666767778762 2222222 2233333323445555555554
No 2
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.75 E-value=50 Score=25.58 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=58.5
Q ss_pred HHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcCCCCCCccccCChHHHHHHHHHHHHhhc
Q psy14863 74 LDSFLQRSLESGVNSTVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLMLSF 153 (319)
Q Consensus 74 ldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~R~~l~LsF 153 (319)
+|+.|..|.+.+..+++|+.+.++.=.+.+-. + -+...+.-|+|-|. +.+|...+ ....=+-.+++=|- -.|
T Consensus 3 le~~i~kAT~~~l~~~dw~~ileicD~In~~~-~-~~k~a~rai~krl~--~~~~~~~l---~aL~LLe~~vkNCG-~~F 74 (151)
T d1juqa_ 3 LESWLNKATNPSNRQEDWEYIIGFCDQINKEL-E-GPQIAVRLLAHKIQ--SPQEWEAL---QALTVLEACMKNCG-RRF 74 (151)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHT--CSSHHHHH---HHHHHHHHHHHHSH-HHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCC-c-cHHHHHHHHHHHHc--CCCHHHHH---HHHHHHHHHHHHcc-HHH
Confidence 68899999999999999996555433333221 1 23456666666665 34442111 11111111111111 112
Q ss_pred cchhhHhhhhhHHHHHHHH--hhccCCchhHHhHhHhHHHH-hhh
Q psy14863 154 NNCLDVVRHLPYLLHIVTM--LVNTGPLNMRCSSHGLVIRM-HTL 195 (319)
Q Consensus 154 ~n~l~aq~yLPEifhIVTL--Li~~Gp~~vR~svhgLliNt-hSL 195 (319)
...+-...|+-|+.-++.- +-+.=|..|+.-+-.++-+- .++
T Consensus 75 ~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f 119 (151)
T d1juqa_ 75 HNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 119 (151)
T ss_dssp HHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHc
Confidence 2333444577776666542 11122445777666666665 554
No 3
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=25.75 E-value=1.3e+02 Score=22.68 Aligned_cols=115 Identities=8% Similarity=-0.001 Sum_probs=65.6
Q ss_pred HHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcCCCCCCccccCChHHHHHHHHHHHH---
Q psy14863 74 LDSFLQRSLESGVNSTVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLM--- 150 (319)
Q Consensus 74 ldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~R~~l~--- 150 (319)
+|++|..|.+.+..+++|+.+.++.-.+.+-... +...+.-|+|-|. +.+|. ..+--+. |+-.|+.
T Consensus 6 ~~~~iekAT~~~~~~~dw~~il~icD~I~~~~~~--~k~a~ral~krl~--~~n~~------v~l~aL~-LLd~~vkNcG 74 (145)
T d1dvpa1 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVT--PKNAFAAIKKKMN--SPNPH------SSCYSLL-VLESIVKNCG 74 (145)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSC--HHHHHHHHHHHHT--CSSHH------HHHHHHH-HHHHHHHHSH
T ss_pred HHHHHHHHcCcCCCCCCHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHc--CCCHH------HHHHHHH-HHHHHHHccc
Confidence 7999999999999999999665554444332211 2344455555554 22222 1221111 1222221
Q ss_pred hhccchhhHhhhhhHHHHHHHHhhccCCchhHHhHhHhHHHH-hhhcccccHH
Q psy14863 151 LSFNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSSHGLVIRM-HTLWNDIAIM 202 (319)
Q Consensus 151 LsF~n~l~aq~yLPEifhIVTLLi~~Gp~~vR~svhgLliNt-hSL~t~~~L~ 202 (319)
-.|...+....|+.++.=++ -..-|..+|.-+-.++-+- +++...+.++
T Consensus 75 ~~f~~~i~s~~fl~~l~~l~---~~~~~~~Vk~kil~li~~W~~~f~~~~~~~ 124 (145)
T d1dvpa1 75 APVHEEVFTKENCEMFSSFL---ESTPHENVRQKMLELVQTWAYAFRSSDKYQ 124 (145)
T ss_dssp HHHHHHHSSHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHHHHTTTCSSCC
T ss_pred hHHHHHHhhHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHhCCCccch
Confidence 22334444555777766443 2344778888888888887 7776665543
No 4
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.57 E-value=70 Score=24.39 Aligned_cols=114 Identities=7% Similarity=0.045 Sum_probs=60.9
Q ss_pred HHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcCCCCCCccccCChHHHHHHHHHHHHhhc
Q psy14863 74 LDSFLQRSLESGVNSTVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLMLSF 153 (319)
Q Consensus 74 ldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~R~~l~LsF 153 (319)
+|.+|..|.+....+++|+.+.++.=.+.+-.. -+...+.-|+|-|. +.+|... .....=+..+++=|- -.|
T Consensus 2 le~liekAT~~~~~~~dw~~il~icD~I~~~~~--~~k~a~ral~krl~--~~n~~~~---l~aL~LLe~~vkNcG-~~f 73 (143)
T d1mhqa_ 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPN--GPTHAPWLLAHKIQ--SPQEKEA---LYALTVLEMCMNHCG-EKF 73 (143)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSH--HHHHHHHHHHHHHT--CSSHHHH---HHHHHHHHHHHHHSC-HHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHc--CCCHHHH---HHHHHHHHHHHHHcC-HHH
Confidence 688999999999999999966555444432221 13455666666665 3344311 111111111111111 122
Q ss_pred cchhhHhhhhhHHHHHHHH--hhccCCchhHHhHhHhHHHH-hhh
Q psy14863 154 NNCLDVVRHLPYLLHIVTM--LVNTGPLNMRCSSHGLVIRM-HTL 195 (319)
Q Consensus 154 ~n~l~aq~yLPEifhIVTL--Li~~Gp~~vR~svhgLliNt-hSL 195 (319)
...+-...|+-|+.-+++- .-...|..||.-+-.++-+- .++
T Consensus 74 h~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f 118 (143)
T d1mhqa_ 74 HSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (143)
T ss_dssp HHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 2333444577776666553 12345667777777666666 554
No 5
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=14.29 E-value=1.3e+02 Score=22.59 Aligned_cols=46 Identities=11% Similarity=0.142 Sum_probs=31.1
Q ss_pred CCCCCchhHHHHHHHHHHH----HHHHHHhhchhhhHHHHHHHHHHHhhhcCC
Q psy14863 38 YRHPNSTTITRTTRLLTSI----LGYFYVSLLVPELIDMVLDSFLQRSLESGV 86 (319)
Q Consensus 38 ~~~~~~~tISRi~RlL~~L----l~~~w~l~~~~~Li~ivldE~I~~Ald~g~ 86 (319)
||+..|.+= .++|..| .+++-.-++++.=++--+|+||+.|.=.+.
T Consensus 3 lr~L~p~Er---qeLL~~Lk~~YR~IlLsYF~~d~~~nq~id~fVn~aFfadi 52 (106)
T d1r8ja1 3 LRNLPAYES---QKLHQAMQTSYREIVLSYFSPNSNLNQSIDNFVNMAFFADV 52 (106)
T ss_dssp TTTSCHHHH---HHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHTTC
T ss_pred cccCCHHHH---HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 566566543 3445555 444556678888889999999998876554
No 6
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.87 E-value=4e+02 Score=21.17 Aligned_cols=161 Identities=11% Similarity=0.049 Sum_probs=89.5
Q ss_pred HHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHH
Q psy14863 30 LVGHLMKGYRHPNSTTITRTTRLLTSILGYFYVSLLVPELIDMVLDSFLQRSLESGVNSTVVEILADTAVALASANVQLV 109 (319)
Q Consensus 30 ~v~~~~~~~~~~~~~tISRi~RlL~~Ll~~~w~l~~~~~Li~ivldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV 109 (319)
++-+++ +-..++.+++.+.+.+..+ =| .+++..+.+++.+.+.+... .......|..+++|+.--.+ +
T Consensus 7 flr~li--~n~Ls~~n~~~i~~~i~kl---~~---~n~e~~~~li~~i~~~~~~~---~~~i~~yA~l~a~L~~~~~~-f 74 (248)
T d1uw4b_ 7 YVRKLL--YKDLSKVTTEKVLRQMRKL---PW---QDQEVKDYVICCMINIWNVK---YNSIHCVANLLAGLVLYQED-V 74 (248)
T ss_dssp HHHHHH--HTTCSTTSHHHHHHHHHTS---CT---TSHHHHHHHHHHHHCGGGSC---GGGHHHHHHHHHHHTTTCHH-H
T ss_pred HHHHHH--HhhCCHhHHHHHHHHHHHC---CC---CCHHHHHHHHHHHhhhhcCc---hhHHHHHHHHHHHHHHHhHH-H
Confidence 344554 4456777777775544433 23 46788888888888876432 23345778888888665555 6
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCccccCCh--HHHHHHHHHHHHhhccchhhHhhhhhHHHHHHHHhhccCCchh------
Q psy14863 110 AKKIIVRLCRVLEKTGATPMPSLEQHTLW--NDIAIMARYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLNM------ 181 (319)
Q Consensus 110 ~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W--~EI~IL~R~~l~LsF~n~l~aq~yLPEifhIVTLLi~~Gp~~v------ 181 (319)
+..+|.++..-+.+ .++++..+ ....-.+||.-.|.=..-+.. .-+++++..|+..|...-
T Consensus 75 ~~~~id~l~e~f~~-------~~e~~~~~~~~r~~~~v~figeLy~~~~v~~----~~i~~~l~~Ll~~~~~~~~~~~~~ 143 (248)
T d1uw4b_ 75 GIHVVDGVLEDIRL-------GMEVNQPKFNQRRISSAKFLGELYNYRMVES----AVIFRTLYSFTSFGVNPDGSPSSL 143 (248)
T ss_dssp HHHHHHHHHHHHHH-------HHHHCCGGGHHHHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHTTCCTTSCCCSS
T ss_pred HHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHccCcH----HHHHHHHHHHHhcCCCcccccccC
Confidence 67888887766653 23332211 122233455444432211111 235577777776665431
Q ss_pred -------H-HhHhHhHHHH-hhhcccccHHHHHHHHHHhhhhhh
Q psy14863 182 -------R-CSSHGLVIRM-HTLWNDIAIMARYLLMLSFNNCLD 216 (319)
Q Consensus 182 -------R-~svhgLliNt-hSL~t~~~L~~~~~l~~~~~~~~d 216 (319)
| ..+=.|+-.+ .++- .-+..++++..+.|||+
T Consensus 144 d~~~d~~rIe~l~~lL~t~G~~l~---~~~~~~~l~~~~~~fq~ 184 (248)
T d1uw4b_ 144 DPPEHLFRIRLVCTILDTCGQYFD---RGSSKRKLDCFLVYFQR 184 (248)
T ss_dssp SCTTCCHHHHHHHHHHHHHGGGCS---SHHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHhHHhc---CccchhhHHHHHHHHHH
Confidence 1 1233444444 5542 33355678888888875
No 7
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.85 E-value=1.9e+02 Score=21.12 Aligned_cols=47 Identities=9% Similarity=0.008 Sum_probs=33.0
Q ss_pred HHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy14863 74 LDSFLQRSLESGVNSTVVEILADTAVALASANVQLVAKKIIVRLCRVLE 122 (319)
Q Consensus 74 ldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~ 122 (319)
+|..|..|.+.+.-.|+++-+..++.+-.+.... +..+++-|.+-+.
T Consensus 4 l~~~V~kATs~~~~~P~~k~v~~i~~~t~~~~~~--~~~~~~~L~~Rl~ 50 (131)
T d1hf8a2 4 VSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVN--IPQLADSLFERTT 50 (131)
T ss_dssp HHHHHHHHTCSSSSCCCHHHHHHHHHHHTCTTSC--HHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCccc--HHHHHHHHHHHhc
Confidence 6788999999999999999888887554333221 2356666665443
No 8
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.72 E-value=3.8e+02 Score=20.05 Aligned_cols=115 Identities=8% Similarity=0.094 Sum_probs=62.9
Q ss_pred HHHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcCCCCCCccccCChHHHHHHHHHHHHhh
Q psy14863 73 VLDSFLQRSLESGVNSTVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLMLS 152 (319)
Q Consensus 73 vldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~R~~l~Ls 152 (319)
=+++.|..|.+....+++|+.+.++.=.+.+-... +...+.-|+|-|. .++...+.---+.++=++.
T Consensus 12 ~~~~~vekAT~~~l~~~dw~~il~icD~In~~~~~--~k~a~ral~krL~-----------~~~n~~v~l~aL~LLe~~v 78 (153)
T d1elka_ 12 PVGQRIEKATDGSLQSEDWALNMEICDIINETEEG--PKDALRAVKKRIV-----------GNKNFHEVMLALTVLETCV 78 (153)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSH--HHHHHHHHHHHHT-----------TCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCcccHHHHHHHHHHHhCCCcC--HHHHHHHHHHHHc-----------cCCCHHHHHHHHHHHHHHH
Confidence 37899999999999999999665554444333221 3455555665542 1222323322223333333
Q ss_pred cc------chhhHhhhhhHHHHHHHHhh--ccCCchhHHhHhHhHHHH-hhhcccccHH
Q psy14863 153 FN------NCLDVVRHLPYLLHIVTMLV--NTGPLNMRCSSHGLVIRM-HTLWNDIAIM 202 (319)
Q Consensus 153 F~------n~l~aq~yLPEifhIVTLLi--~~Gp~~vR~svhgLliNt-hSL~t~~~L~ 202 (319)
=| ..+-.+.|+=|++ +..+. ..-|..||.-+-.++-+- .++-..+.++
T Consensus 79 kNCG~~fh~evas~~Fl~~ll--~~~~~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~ 135 (153)
T d1elka_ 79 KNCGHRFHVLVASQDFVESVL--VRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLT 135 (153)
T ss_dssp HHSCHHHHHHHTSHHHHHHHT--HHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCH
T ss_pred HHccHHHHHHHhhHHHHHHHH--HHHhccCCCCcHHHHHHHHHHHHHHHHHhcCCccch
Confidence 33 3333444776663 22222 233446788888777777 6654444444
No 9
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.77 E-value=4.1e+02 Score=19.69 Aligned_cols=111 Identities=11% Similarity=0.011 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhhcCCCCcchHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcCCCCCCccccCChHHHHHHHHHHHH
Q psy14863 71 DMVLDSFLQRSLESGVNSTVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQHTLWNDIAIMARYLLM 150 (319)
Q Consensus 71 ~ivldE~I~~Ald~g~gs~~~Eiia~i~vsLsS~~v~lV~gkIIsRLrk~i~~Ts~~Ps~~L~~h~~W~EI~IL~R~~l~ 150 (319)
+--+|+.|..|.+....+++|+.+.++.=.+.+-... +...+.-|+|-|. +.+|. +.---+.++-+
T Consensus 6 ~~~~e~~iekAT~~~l~~~dw~~ileicD~I~~~~~~--~k~a~r~l~krl~--~~~~~----------~~l~aL~LLe~ 71 (145)
T d1ujka_ 6 PETLEARINRATNPLNKELDWASINGFCEQLNEDFEG--PPLATRLLAHKIQ--SPQEW----------EAIQALTVLET 71 (145)
T ss_dssp TTSHHHHHHHHTCTTCSSCCHHHHHHHHHHHTSSTTH--HHHHHHHHHHHHT--CSSHH----------HHHHHHHHHHH
T ss_pred cchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHc--CCCHH----------HHHHHHHHHHH
Confidence 3457899999999999999999766665555432221 3455556666665 33332 11111222233
Q ss_pred hhcc------chhhHhhhhhHHHHHHHH--hhccCCchhHHhHhHhHHHH-hhh
Q psy14863 151 LSFN------NCLDVVRHLPYLLHIVTM--LVNTGPLNMRCSSHGLVIRM-HTL 195 (319)
Q Consensus 151 LsF~------n~l~aq~yLPEifhIVTL--Li~~Gp~~vR~svhgLliNt-hSL 195 (319)
+.-| .-+-...|+-|+.-++.- .-..-|..||.-+-+++-+- .++
T Consensus 72 ~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f 125 (145)
T d1ujka_ 72 CMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 125 (145)
T ss_dssp HHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence 3333 223344477777666641 12334556777776666665 544
No 10
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=7.01 E-value=53 Score=21.40 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhcCCCCc-chHH
Q psy14863 70 IDMVLDSFLQRSLESGVNST-VVEI 93 (319)
Q Consensus 70 i~ivldE~I~~Ald~g~gs~-~~Ei 93 (319)
+|-++|-+..+|=|+|++|. +.|-
T Consensus 3 IdrLi~RIrERAEDSGNESeGD~eE 27 (45)
T d1vpua_ 3 IDRLIDRITERAEDSGNESEGDQEE 27 (45)
T ss_dssp HHHHHHHHHHTTCHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHcccCCCCCcccHHH
Confidence 46678888999999999884 4454
Done!