RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14863
         (319 letters)



>gnl|CDD|181972 PRK09588, PRK09588, hypothetical protein; Reviewed.
          Length = 376

 Score = 30.7 bits (70), Expect = 1.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 7/40 (17%)

Query: 96  DTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPSLEQH 135
           D A+A A AN QL+A++I+ +L        A   P L+  
Sbjct: 206 DDALAFARANRQLIARRILQQL-------RAEGEPVLDVA 238


>gnl|CDD|218779 pfam05853, DUF849, Prokaryotic protein of unknown function
           (DUF849).  This family consists of several hypothetical
           prokaryotic proteins with no known function.
          Length = 273

 Score = 29.8 bits (68), Expect = 1.8
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 101 LASANVQLVAKKIIVRLCRVLEKTGATP 128
           LA +N QLV +   VR+ R L +  ATP
Sbjct: 239 LAPSNAQLVER--AVRIARELGREVATP 264


>gnl|CDD|238708 cd01420, MoaC_PE, MoaC family, prokaryotic and eukaryotic. Members
           of this family are involved in molybdenum cofactor
           (Moco) biosynthesis, an essential cofactor of a diverse
           group of redox enzymes. MoaC, a small hexameric protein,
           converts, together with MoaA, a guanosine derivative to
           the precursor Z by inserting the carbon-8 of the purine
           between the 2' and 3' ribose carbon atoms, which is the
           first of three phases of Moco biosynthesis.
          Length = 140

 Score = 28.7 bits (65), Expect = 2.4
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 88  STVVEILADTAVALASANV----QLVAKKIIVRLCRVLEKTG 125
            T VE+ A TAV++A+  +    + V K +++   R+LEK+G
Sbjct: 94  RTGVEMEALTAVSVAALTIYDMCKAVDKGMVIGGIRLLEKSG 135


>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
           ligase (FACL).  Fatty acyl-CoA ligases catalyze the
           ATP-dependent activation of fatty acids in a two-step
           reaction. The carboxylate substrate first reacts with
           ATP to form an acyl-adenylate intermediate, which then
           reacts with CoA to produce an acyl-CoA ester. This is a
           required step before free fatty acids can participate in
           most catabolic and anabolic reactions.
          Length = 359

 Score = 28.0 bits (63), Expect = 7.3
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 125 GATPMPSLEQHTLWNDIAIMARYLLMLSFNNCLDVVRH-LPYLLHIVTMLVNTGPLNMRC 183
           G T  P L +H+  N++A  A    +LS     DV+ + LP L H+   +V    L    
Sbjct: 12  GTTGAPKLARHSHRNEVA-NAWMAALLSGLGPGDVLLNGLP-LFHVGGAIVTG--LAPLA 67

Query: 184 SSHGLVIRMHTLWNDIAIMARY 205
               +V+   + + + A++A +
Sbjct: 68  RGATVVLPTPSGFRNPAVVANF 89


>gnl|CDD|187889 cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily
          protein Cas6.  CRISPR (Clustered Regularly Interspaced
          Short Palindromic Repeats) and associated Cas proteins
          comprise a system for heritable host defense by
          prokaryotic cells against phage and other foreign DNA;
          Cas6 is an endoribonuclease that generates crRNAs,
          predicted subunit of Cascade complex; RAMP superfamily
          protein; Possesses double RRM/ferredoxin fold.
          Length = 240

 Score = 27.4 bits (61), Expect = 10.0
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 53 LTSILGYFYVSLLVPELIDMVLDSFLQ 79
                 FY S   PE+I+ +++  L+
Sbjct: 72 KLGYKASFYFSSPNPEVIESLVEGLLE 98


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.328    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0693    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,154,545
Number of extensions: 1553601
Number of successful extensions: 1486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1484
Number of HSP's successfully gapped: 18
Length of query: 319
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 222
Effective length of database: 6,635,264
Effective search space: 1473028608
Effective search space used: 1473028608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.6 bits)