RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14863
(319 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 7e-07
Identities = 45/229 (19%), Positives = 78/229 (34%), Gaps = 59/229 (25%)
Query: 5 EPLL-WHFKQLDGAVGLSFKANFHFALVGHLMKGYRHPNSTTITRTTRLLTSILGYFYVS 63
L+ + + L + + A F ++++ +P++T L SI +S
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT---PDKDYLLSIP----IS 237
Query: 64 LLVPELIDMVLDSFLQ---------------RSLESGVNSTVVEILADTAVALASAN--- 105
P LI + RS G ++ AVA+A +
Sbjct: 238 C--P-LI--GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT--AVAIAETDSWE 290
Query: 106 --VQLVAKKIIVRL----CRVLEKTGATPM-PSLEQHTLWNDIAIMARYLLMLSFNNC-- 156
+K I L R E T + PS+ + +L N+ + + MLS +N
Sbjct: 291 SFFVS-VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS---PMLSISNLTQ 346
Query: 157 ------LDVVR-HLPYLLHIVTMLVNTGPLNMRCSSH-----GLVIRMH 193
++ HLP + LVN G N+ S GL + +
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPPQSLYGLNLTLR 394
Score = 48.1 bits (114), Expect = 3e-06
Identities = 68/411 (16%), Positives = 106/411 (25%), Gaps = 167/411 (40%)
Query: 49 TTRLLTSILGYFYVSLLVP-----------------------------------ELIDMV 73
+TR LT G LLVP EL+
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 74 LDSFLQRSLESGVNSTVVEILA--------------D--TAVA--LASANVQLVAKKIIV 115
L ++ +E ++L D A L + LV K ++
Sbjct: 65 L-GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 116 R----LCRVLEKTGATPMPSL---------------------------EQHTLWND---- 140
+ + ++ S E L+
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 141 ----IAIMARYLLMLS---------FNNCLDVVRHL---------PYLL----------- 167
I A L L F L+++ L YLL
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 168 ----HIVTMLVNTG--PLNMRCSSHGLVIRMHTLWNDIAIMARYLLML----SFNNCLDV 217
H V G P +R G L + A + SF V
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL-----VTAVAIAETDSWESFFVS--V 296
Query: 218 VRHLPYLLHIVTMLVNTGPLNMRCSSHGLVITPMPSLEQHTLWNDIAIMARYLLMLSFNN 277
+ + L I G +RC + PS+ + +L N+ + + MLS +N
Sbjct: 297 RKAITVLFFI-------G---VRCYEAYPNTSLPPSILEDSLENNEGVPS---PMLSISN 343
Query: 278 C--------LDVVR-HLPYLLHIVTMLVNTGPLNMRCSSH-----GLVINI 314
++ HLP + LVN G N+ S GL + +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPPQSLYGLNLTL 393
Score = 47.0 bits (111), Expect = 6e-06
Identities = 73/447 (16%), Positives = 117/447 (26%), Gaps = 183/447 (40%)
Query: 7 LLWHFKQ--LDGAVGLSFKANFHFALVGHLMKGYRHPNSTTITRTTRLLTSILGYFYVSL 64
L F+ L+G + H AL L++ N TT+ +T L+ + Y +
Sbjct: 87 CLTEFENCYLEGN-------DIH-ALAAKLLQ----ENDTTLVKTKELIKN---YITARI 131
Query: 65 LVPELIDMVLDSFLQRSLES------------GVNST---------------VVEILADT 97
+ D +S L R++ G V +++ +
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS 191
Query: 98 AVALAS-ANVQLVAKKIIVRLCRV---LEKTGATPMPSLEQHTLWNDIAIMARYLLMLSF 153
A L+ L A+K+ + + LE TP D + + S
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP-----------DKDYLLSIPI--SC 238
Query: 154 NNCLDVVRHLPY-----LLHIVTMLVNTG--PLNMRCSSHGLVIRMHTL----------- 195
P L H V G P +R G L
Sbjct: 239 ----------PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 196 WND---IAIMA-RYLL---------------------------------MLSFNNC---- 214
W A L MLS +N
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 215 ----LDVVR-HLPYLLHIVTMLVNTGPLNMRCSSH-----GLVIT------PMPSLEQHT 258
++ HLP + LVN G N+ S GL +T P L+Q
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPPQSLYGLNLTLRKAKAP-SGLDQSR 406
Query: 259 LWND---IAIMARYLLMLS-FNNCLDVVRHLPYL----------------------LHIV 292
+ + R+L + S F H L + I
Sbjct: 407 IPFSERKLKFSNRFLPVASPF--------HSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 293 TMLVNTGPLNMRCSSHGLVINIIHSLL 319
G ++R S + I+ ++
Sbjct: 459 VYDTFDG-SDLRVLSGSISERIVDCII 484
Score = 29.2 bits (65), Expect = 2.6
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 30/83 (36%)
Query: 92 EILADT-----AVALASANVQLVAKKIIVRLCRVLEKTGATPMP------SL-EQHTLWN 139
+L+ T A+ L A L+ G P SL E +
Sbjct: 1724 GLLSATQFTQPALTLME-----KA------AFEDLKSKGLIPADATFAGHSLGE----YA 1768
Query: 140 DIAIMARYLLMLSFNNCLDVVRH 162
+A +A + S + ++VV +
Sbjct: 1769 ALASLADVM---SIESLVEVVFY 1788
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 1e-05
Identities = 52/359 (14%), Positives = 106/359 (29%), Gaps = 88/359 (24%)
Query: 7 LLWHFKQLDGAVGLSFKANFHFALVGHLMKG----------YRHPNSTTITRTTRLLTSI 56
+L F+ +F NF V + K + ++ T RL ++
Sbjct: 21 ILSVFED-------AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD--AVSGTLRLFWTL 71
Query: 57 LGY-------FYVSLLVPE---LIDMVLDSFLQRSLESGVNSTVVEILADTAVALASANV 106
L F +L L+ + Q S+ + + + L + A NV
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 107 QLVAKKIIVRLCRVLEKTGATPMPSLEQH--------TLWNDIAIMARYLLM-------L 151
+ ++L + L + P ++ + D+ + + L
Sbjct: 132 S--RLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 152 SFNNCL---DVVRHLPYLLHIVTMLVNTGPLNMRCSSHGLVIRMHTLWNDIAIMARYLLM 208
+ NC V+ L LL+ + R H I++ + I R LL
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQID-----PNWTSRSD-HSSNIKLRI--HSIQAELRRLLK 239
Query: 209 L-SFNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSSHGLVITPMPSLEQHTLWNDIAIM- 266
+ NCL V+ ++ N+ C L+ T +
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAF-------NLSCKI--LLTT-----------RFKQVTD 279
Query: 267 ------ARYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSSHGLVINIIHSLL 319
++ + + L LL + P + +++ ++II +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSIIAESI 337
Score = 40.2 bits (93), Expect = 8e-04
Identities = 55/392 (14%), Positives = 111/392 (28%), Gaps = 115/392 (29%)
Query: 7 LLWHFKQ-----LDGAVGLSFKANFHFALVGHLMKGYRHPNSTT---ITRTTRLLTSILG 58
L W + V + N+ F L+ + R P+ T I + RL
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYND--N 123
Query: 59 YFYVSLLVP--ELIDMVLDSFLQRSLESGVNSTVVE--------ILADTAVALASANVQL 108
+ V + + + L+ V +++ +A S VQ
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNV---LIDGVLGSGKTWVA--LDVCLSYKVQC 178
Query: 109 ----------VAK--------KIIVRLCRVLEK---TGATPMPSLEQHTLWNDIAIMARY 147
+ +++ +L ++ + + +++ + I R
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRR 236
Query: 148 LLML-SFNNCLDVVRHLPYLLHI------VTMLVNT---GPLNMRCSSHGLVIRM-HTLW 196
LL + NCL V+ ++ +L+ T + ++ I + H
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 197 -----NDIAIMARYL----------------LMLS--------FNNCLDVVRHLPY--LL 225
+++ +YL LS D +H+ L
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 226 HIVTMLVNT-GPLNMRCSSHGLVI----TPMPS--LEQHTLWNDIAIMARYLLMLSFNNC 278
I+ +N P R L + +P+ L +W D + ++
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS--LIWFD----------VIKSDV 404
Query: 279 LDVVRHLPYLLHIVTMLVNTGPLNMRCSSHGL 310
+ VV L LV P S +
Sbjct: 405 MVVVNKL-----HKYSLVEKQPKESTISIPSI 431
Score = 36.0 bits (82), Expect = 0.017
Identities = 40/289 (13%), Positives = 85/289 (29%), Gaps = 62/289 (21%)
Query: 1 MESREPLLWHFKQ-----LDGAVGLSFKANFHFALVGHLMKGYRHPNSTTITR------- 48
+E + LL+ D + + + + A + L+K + N +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 49 ------------TTR--LLTSILGYFYVSLLVPELIDMVLDSFLQRSLESGVNSTVVEIL 94
TTR +T L + + + M L +SL + L
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 95 ADTAVALASANVQLVAKKIIVRLCR--------------VLEKTGATPMPSLEQHTLWN- 139
+ + ++A+ I L ++E + P+ +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 140 -----DIAIMARYLLMLSFNNCLDVVRHLPYLLHIVTMLVNTGPLNMRCSSHGLVIRMHT 194
I L ++ F+ V + LH + LV P S + + +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKV 437
Query: 195 LWNDIA-----IMARYLLMLSFNN------CLD--VVRHLPYLLHIVTM 230
+ I+ Y + +F++ LD H+ + H+ +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--HLKNI 484
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.060
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 7/30 (23%)
Query: 80 RSLESGVNSTVVEILA-DTAVALA-SANVQ 107
+ L++ + ++ A D+A ALA A ++
Sbjct: 23 KKLQASL-----KLYADDSAPALAIKATME 47
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding
protein, helix-turn-H restriction-modification,
transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Length = 98
Score = 26.8 bits (59), Expect = 3.8
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 12 KQLDGAVGLSFKANFHFALVGHLMKGYRHPNSTTITRTTRLLTSILGYFYV 62
++L G+ + A + KG P+ R ++L + Y Y
Sbjct: 18 EKLGVLAGIDEASAS--ARMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYT 66
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel,
tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces
cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A*
1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A*
1aw5_A
Length = 342
Score = 27.1 bits (61), Expect = 7.4
Identities = 13/72 (18%), Positives = 17/72 (23%), Gaps = 32/72 (44%)
Query: 87 NSTVVEILADTAVALASANVQLVAKKIIVRLCRVLEKTGATPMPS-------------LE 133
V LA AV A A VA PS L
Sbjct: 154 RERSVSRLAAVAVNYAKAGAHCVA-------------------PSDMIDGRIRDIKRGLI 194
Query: 134 QHTLWNDIAIMA 145
L + +++
Sbjct: 195 NANLAHKTFVLS 206
>2bcf_A Probable D-alanyl-D-alanine carboxypeptidase DACB2;
penicillin-binding protein, DD-2 carboxypeptidase,
directed evolution; 2.30A {Mycobacterium tuberculosis}
Length = 276
Score = 27.2 bits (61), Expect = 7.8
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 242 SSHGLVITPMPSLEQHTLWNDIAIMARYLL 271
+ GL P + +D+ ++ R +
Sbjct: 139 TPSGL---DGPGGSGASTAHDLVVIFRAAM 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.139 0.427
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,854,280
Number of extensions: 287127
Number of successful extensions: 1067
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1055
Number of HSP's successfully gapped: 14
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.7 bits)