BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14865
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04690|NF1_MOUSE Neurofibromin OS=Mus musculus GN=Nf1 PE=1 SV=1
Length = 2841
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 58/67 (86%)
Query: 32 LLFGVSLCIPANNTIFIKSISETLAKNEPHLTLEFLEECISGFKQSTIVLKHLCLEYMTP 91
LL LCIPANNT+FI SIS+TLA NEPHLTLEFLEECISGF +S+I LKHLCLEYMTP
Sbjct: 1894 LLETSGLCIPANNTLFIVSISKTLAANEPHLTLEFLEECISGFSKSSIELKHLCLEYMTP 1953
Query: 92 WLPNLVK 98
WL NLV+
Sbjct: 1954 WLSNLVR 1960
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 24/26 (92%)
Query: 12 EEAQRVLRLSLDEFALPKFYLLFGVS 37
EE ++VLRLSL EF+LPKFYLLFG+S
Sbjct: 2145 EETKQVLRLSLTEFSLPKFYLLFGIS 2170
>sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2
Length = 2839
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 58/67 (86%)
Query: 32 LLFGVSLCIPANNTIFIKSISETLAKNEPHLTLEFLEECISGFKQSTIVLKHLCLEYMTP 91
LL LCIPANNT+FI SIS+TLA NEPHLTLEFLEECISGF +S+I LKHLCLEYMTP
Sbjct: 1892 LLETSGLCIPANNTLFIVSISKTLAANEPHLTLEFLEECISGFSKSSIELKHLCLEYMTP 1951
Query: 92 WLPNLVK 98
WL NLV+
Sbjct: 1952 WLSNLVR 1958
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 24/26 (92%)
Query: 12 EEAQRVLRLSLDEFALPKFYLLFGVS 37
EE ++VLRLSL EF+LPKFYLLFG+S
Sbjct: 2143 EETKQVLRLSLTEFSLPKFYLLFGIS 2168
>sp|P97526|NF1_RAT Neurofibromin OS=Rattus norvegicus GN=Nf1 PE=1 SV=1
Length = 2820
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 58/67 (86%)
Query: 32 LLFGVSLCIPANNTIFIKSISETLAKNEPHLTLEFLEECISGFKQSTIVLKHLCLEYMTP 91
LL LCIPANNT+FI SIS+TLA NEPHLTLEFLEECISGF +S+I LKHLCLEYMTP
Sbjct: 1873 LLETSGLCIPANNTLFIVSISKTLAANEPHLTLEFLEECISGFSKSSIELKHLCLEYMTP 1932
Query: 92 WLPNLVK 98
WL NLV+
Sbjct: 1933 WLSNLVR 1939
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 24/26 (92%)
Query: 12 EEAQRVLRLSLDEFALPKFYLLFGVS 37
EE ++VLRLSL EF+LPKFYLLFG+S
Sbjct: 2124 EETKQVLRLSLTEFSLPKFYLLFGIS 2149
>sp|P35608|NF1_CHICK Neurofibromin (Fragment) OS=Gallus gallus GN=NF1 PE=2 SV=1
Length = 270
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 24/26 (92%)
Query: 12 EEAQRVLRLSLDEFALPKFYLLFGVS 37
EE ++VLRLSL EF+LPKFYLLFG+S
Sbjct: 18 EETKQVLRLSLTEFSLPKFYLLFGIS 43
>sp|E9Q8I9|FRY_MOUSE Protein furry homolog OS=Mus musculus GN=Fry PE=1 SV=1
Length = 3020
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 32 LLFGVSLCIPANNTIFIKSISETLAKNEPHLTLEFLEECISGFKQSTIVLKHLCLEYMTP 91
+L+G +P ++ + +S LA+ P LTL E F + + + L Y+ P
Sbjct: 1303 ILYGTHGPLPPLYSVSLALLSCELARMYPELTLPLFSEVSQRFPTTHPNGRQIMLTYLLP 1362
Query: 92 WLPNL 96
WL N+
Sbjct: 1363 WLHNI 1367
>sp|Q5TBA9|FRY_HUMAN Protein furry homolog OS=Homo sapiens GN=FRY PE=1 SV=1
Length = 3013
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 32 LLFGVSLCIPANNTIFIKSISETLAKNEPHLTLEFLEECISGFKQSTIVLKHLCLEYMTP 91
+L+G +P ++ + +S LA+ P LTL E F + + + L Y+ P
Sbjct: 1303 ILYGTHGPLPPLYSVSLALLSCELARMYPELTLPLFSEVSQRFPTTHPNGRQIMLTYLLP 1362
Query: 92 WLPNL 96
WL N+
Sbjct: 1363 WLHNI 1367
>sp|Q9H497|TOR3A_HUMAN Torsin-3A OS=Homo sapiens GN=TOR3A PE=1 SV=1
Length = 397
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 54 TLAKNEPHLTLEFLEECISGFKQSTIVLKHLCLEYMTPWLP 94
T+ EPHL E +E +GF S +V ++L ++Y P+LP
Sbjct: 298 TMEHLEPHLQAEIVETIDNGFGHSRLVKENL-IDYFIPFLP 337
>sp|O94915|FRYL_HUMAN Protein furry homolog-like OS=Homo sapiens GN=FRYL PE=1 SV=2
Length = 3013
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 51 ISETLAKNEPHLTLEFLEECISGFKQSTIVLKHLCLEYMTPWLPNL 96
+SE LA+ P LTL E + + + + L Y+ PW+ N+
Sbjct: 1271 LSEELARAYPELTLAIFSEISQRIQTAHPAGRQVMLHYLLPWMNNI 1316
>sp|Q9H2P0|ADNP_HUMAN Activity-dependent neuroprotector homeobox protein OS=Homo
sapiens GN=ADNP PE=1 SV=1
Length = 1102
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 40 IPANNTIFIKSISETLAKNEPHLTLEFLEECISGFKQ---STIVLKHLCLEYMTPWLPNL 96
+P NN ++ +T+ K + LE+ +E I FKQ + LK+ E + W P+L
Sbjct: 4 LPVNNLGSLRKARKTVKKILSDIGLEYCKEHIEDFKQFEPNDFYLKNTTWEDVGLWDPSL 63
Query: 97 VK 98
K
Sbjct: 64 TK 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,128,656
Number of Sequences: 539616
Number of extensions: 1116381
Number of successful extensions: 3169
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3157
Number of HSP's gapped (non-prelim): 14
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)