Query psy14865
Match_columns 98
No_of_seqs 94 out of 103
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 22:47:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fao_A Probable ATP-dependent 61.7 14 0.00047 28.8 5.2 50 13-62 152-211 (309)
2 2iru_A Putative DNA ligase-lik 58.7 11 0.00038 29.3 4.2 51 13-63 154-214 (303)
3 3or1_C Sulfite reductase GAMA; 38.5 45 0.0015 21.9 4.2 53 32-85 10-70 (105)
4 1lfd_A Ralgds; RAL, effector i 30.1 38 0.0013 21.9 2.6 40 9-48 24-72 (87)
5 3b09_A Peptidyl-prolyl CIS-tra 23.9 1E+02 0.0036 19.2 3.9 35 42-76 52-86 (88)
6 1ef5_A RGL; RAS-binding domain 18.1 59 0.002 21.6 1.8 39 9-47 39-86 (103)
7 2izx_A CAMP-dependent protein 15.8 1.4E+02 0.0049 15.5 2.9 38 39-76 2-39 (41)
8 2kyg_A CAMP-dependent protein 14.2 1.8E+02 0.0063 16.0 3.1 39 38-76 9-47 (50)
9 1w53_A Phosphoserine phosphata 14.0 64 0.0022 20.5 1.1 36 40-75 43-81 (84)
10 1ckt_A High mobility group 1 p 13.9 1.8E+02 0.0061 16.3 3.1 40 45-84 10-52 (71)
No 1
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=61.72 E-value=14 Score=28.80 Aligned_cols=50 Identities=30% Similarity=0.400 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhhccCCCceeeec-cce--eecCCh-------hHHHHHHhHHhhccCCCC
Q psy14865 13 EAQRVLRLSLDEFALPKFYLLFG-VSL--CIPANN-------TIFIKSISETLAKNEPHL 62 (98)
Q Consensus 13 ~ay~lL~~~~~~F~L~k~~Ll~s-~~l--~vP~d~-------t~Fi~~IS~~LA~~~P~L 62 (98)
++-++++..|++.||.++.--.| +|+ ++|-.+ ..|...|.+.|++..|++
T Consensus 152 ~aA~~~r~~L~~lGL~~f~KTSGgkGlHV~vPl~~~~~~~~vr~fa~~~A~~l~~~~Pd~ 211 (309)
T 2fao_A 152 EATQLSLTLLDELGLRAFLKTSGGKGMHLLVPLERRHGWDEVKDFAQAISQHLARLMPER 211 (309)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECSSSSEEEEEECCSCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHcCCceeeEccCCCeeEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCcce
Confidence 55677999999999998755444 665 677654 467888999999999975
No 2
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=58.69 E-value=11 Score=29.33 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhhccCCCceeee-ccce--eecCC-------hhHHHHHHhHHhhccCCCCc
Q psy14865 13 EAQRVLRLSLDEFALPKFYLLF-GVSL--CIPAN-------NTIFIKSISETLAKNEPHLT 63 (98)
Q Consensus 13 ~ay~lL~~~~~~F~L~k~~Ll~-s~~l--~vP~d-------~t~Fi~~IS~~LA~~~P~LT 63 (98)
++-++++..|++.||.++.--. ++|+ ++|-. ...|...|.+.|++..|++.
T Consensus 154 ~aA~~~r~~L~~lGL~~f~KTSGgkGlHV~vPl~~~~~~~~vr~fa~~~A~~l~~~~Pd~~ 214 (303)
T 2iru_A 154 EVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPVSSRGATVLAKRVAQRLEQAMPALV 214 (303)
T ss_dssp HHHHHHHHHHHTTTCCCEEEECSSSCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHCTTTE
T ss_pred HHHHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCccee
Confidence 5667899999999999874444 4665 56654 35688999999999999753
No 3
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=38.55 E-value=45 Score=21.88 Aligned_cols=53 Identities=8% Similarity=-0.056 Sum_probs=39.7
Q ss_pred eeeccceeecCChhHHHHHHhHHhhccC--CCCcH------HHHHHHHhccccCchhhhhHH
Q psy14865 32 LLFGVSLCIPANNTIFIKSISETLAKNE--PHLTL------EFLEECISGFKQSTIVLKHLC 85 (98)
Q Consensus 32 Ll~s~~l~vP~d~t~Fi~~IS~~LA~~~--P~LTl------~Fl~e~~~g~~~~~~~~k~~~ 85 (98)
-+....-.+..|..++...+.+.||+.+ ++||- +|+.+|+.-+..++ ..|.++
T Consensus 10 ~ie~D~~GfL~~~~dW~ee~A~~lA~~egI~eLTe~HW~vI~flR~yY~e~~~~P-~iR~l~ 70 (105)
T 3or1_C 10 AFEVDEDGFLNAFDDWCPEWVKYAKGSEGIGAGSADHQKIIDFLQDYYKANGIAP-MVRILS 70 (105)
T ss_dssp EEEBCTTSCBSCGGGCCHHHHHHHGGGGTCSSCCHHHHHHHHHHHHHHHHHSSCC-CHHHHH
T ss_pred EeeeCCCCCcCChHhCCHHHHHHHHHHCCCccCCHHHHHHHHHHHHHHHHHCCCC-cHHHHH
Confidence 3445555678888999999999999998 58994 68889988776664 344443
No 4
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=30.07 E-value=38 Score=21.90 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHhhhhccCCCc--------eee-eccceeecCChhHHH
Q psy14865 9 YRHEEAQRVLRLSLDEFALPKF--------YLL-FGVSLCIPANNTIFI 48 (98)
Q Consensus 9 ~~~~~ay~lL~~~~~~F~L~k~--------~Ll-~s~~l~vP~d~t~Fi 48 (98)
...+.|-.+++-+++-++|++. |++ .++++.+|.+.-.|-
T Consensus 24 tsqDrtp~vI~~al~Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~aNvfY 72 (87)
T 1lfd_A 24 TSQDKAPTVIRKAMDKHNLDEDEPEDYELLQIISEDHKLKIPENANVFY 72 (87)
T ss_dssp ETTCBHHHHHHHHHHHTTCCSSCGGGEEEEEESSSSCEEECCTTSBHHH
T ss_pred ecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcCCCCEEecCCCccEEE
Confidence 3347889999999999999933 666 699999999888773
No 5
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=23.90 E-value=1e+02 Score=19.17 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=29.8
Q ss_pred CChhHHHHHHhHHhhccCCCCcHHHHHHHHhcccc
Q psy14865 42 ANNTIFIKSISETLAKNEPHLTLEFLEECISGFKQ 76 (98)
Q Consensus 42 ~d~t~Fi~~IS~~LA~~~P~LTl~Fl~e~~~g~~~ 76 (98)
-|.-.|+..|.+.++...|.||-+=+.+.+..|.+
T Consensus 52 lD~dav~~Gl~Dal~Gk~~~ls~eei~~~l~~~~~ 86 (88)
T 3b09_A 52 IDIPAVQAGLADAFAGKESAVSMEELQVAFTEISR 86 (88)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 48889999999999999999999988887776643
No 6
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=18.15 E-value=59 Score=21.62 Aligned_cols=39 Identities=15% Similarity=0.334 Sum_probs=31.3
Q ss_pred ccchHHHHHHHHhhhhccCC-Cc-------eeee-ccceeecCChhHH
Q psy14865 9 YRHEEAQRVLRLSLDEFALP-KF-------YLLF-GVSLCIPANNTIF 47 (98)
Q Consensus 9 ~~~~~ay~lL~~~~~~F~L~-k~-------~Ll~-s~~l~vP~d~t~F 47 (98)
...+.|-.+++-.++-++|+ .. +++. ++++.+|.+.--|
T Consensus 39 tsqDrtp~VI~raL~Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~aNVF 86 (103)
T 1ef5_A 39 TSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIPDSANVF 86 (103)
T ss_dssp SSCCCTHHHHHHHTTTTTCCCCSSSSEEEEEECSSSCCEESSCCCCTT
T ss_pred ecCCCcHHHHHHHHHHcCCCCCChhheEEEEEcCCCCEEecCCCcceE
Confidence 33478889999999999999 32 5666 9999999887666
No 7
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=15.82 E-value=1.4e+02 Score=15.54 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=32.0
Q ss_pred eecCChhHHHHHHhHHhhccCCCCcHHHHHHHHhcccc
Q psy14865 39 CIPANNTIFIKSISETLAKNEPHLTLEFLEECISGFKQ 76 (98)
Q Consensus 39 ~vP~d~t~Fi~~IS~~LA~~~P~LTl~Fl~e~~~g~~~ 76 (98)
.+|.+-..-+......+-+..|.==++|..++|..+.+
T Consensus 2 ~ip~~l~~lL~~~~~~vl~~qP~di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 2 QIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLRE 39 (41)
T ss_dssp -CCTTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh
Confidence 47888888899999999999999889999999887653
No 8
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=14.24 E-value=1.8e+02 Score=16.01 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=34.9
Q ss_pred eeecCChhHHHHHHhHHhhccCCCCcHHHHHHHHhcccc
Q psy14865 38 LCIPANNTIFIKSISETLAKNEPHLTLEFLEECISGFKQ 76 (98)
Q Consensus 38 l~vP~d~t~Fi~~IS~~LA~~~P~LTl~Fl~e~~~g~~~ 76 (98)
..+|.+-..-+..+...+-+..|.==++|..++|..+.+
T Consensus 9 ~~ip~~l~~lL~~~~~evlr~qP~Di~~Faa~yF~~l~~ 47 (50)
T 2kyg_A 9 IQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLRE 47 (50)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred hcCCccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999987654
No 9
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=14.04 E-value=64 Score=20.48 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=21.7
Q ss_pred ecCChhHHHHHHhHHhhccCC---CCcHHHHHHHHhccc
Q psy14865 40 IPANNTIFIKSISETLAKNEP---HLTLEFLEECISGFK 75 (98)
Q Consensus 40 vP~d~t~Fi~~IS~~LA~~~P---~LTl~Fl~e~~~g~~ 75 (98)
-|-+-...=.+.=+.|..+-| +-|+|||.|...||-
T Consensus 43 ~PEeiV~iHk~~i~el~~~l~e~v~~Sfd~L~Evm~gyG 81 (84)
T 1w53_A 43 PPEEIISIHRKVLKELYPSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp CHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444433 368999999998873
No 10
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=13.94 E-value=1.8e+02 Score=16.27 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=30.4
Q ss_pred hHHHHHHhHHhhccCCCCc---HHHHHHHHhccccCchhhhhH
Q psy14865 45 TIFIKSISETLAKNEPHLT---LEFLEECISGFKQSTIVLKHL 84 (98)
Q Consensus 45 t~Fi~~IS~~LA~~~P~LT---l~Fl~e~~~g~~~~~~~~k~~ 84 (98)
..|...--+.+....|+++ -+.-+.+-.-|...+++.|.-
T Consensus 10 ~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~ 52 (71)
T 1ckt_A 10 AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGK 52 (71)
T ss_dssp HHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHH
T ss_pred HHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHH
Confidence 3455566667778899997 788888888899888877643
Done!