RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14865
         (98 letters)



>gnl|CDD|222610 pfam14228, MOR2-PAG1_mid, Cell morphogenesis central region.  This
           family is the conserved central region of proteins that
           are involved in cell morphogenesis.
          Length = 1120

 Score = 30.4 bits (68), Expect = 0.11
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 40  IPANNTIFIKSISETLAKNEPHLTLEFLEECIS-GFKQSTIVLKHLCLEYMTPWLPNL 96
           +P +   F   +S  LAK+ P L+    EE +        I+ +H  L  M PW+ NL
Sbjct: 594 LPDSYQQFQYKLSAKLAKDHPELSEALCEEIMQRQLDAVDIIAQHQVLTCMAPWIENL 651


>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
          Length = 3095

 Score = 28.4 bits (63), Expect = 0.56
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 16/53 (30%)

Query: 7    RCYRHEEAQRVLRLSLDEFALPKFYLLFGVSLCIPANNTIFIKSISETLAKNE 59
            R +  E A+R L               +GVS+ IP+ NTI   SI++ L K +
Sbjct: 1593 RTHSPEGARRALE--------------YGVSIVIPSANTIM--SIADALQKEK 1629


>gnl|CDD|145679 pfam02652, Lactate_perm, L-lactate permease.  L-lactate permease is
           an integral membrane protein probably involved in
           L-lactate transport.
          Length = 522

 Score = 25.8 bits (57), Expect = 3.8
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 14  AQRVLRLSLDEFALPKFYLLFGVSLCIPANNTIFIKSISETLAK 57
           A  + + +L E ALP   ++F ++     N +   K+++  LA 
Sbjct: 374 ALSIFKETLKEMALPIITIIFVLAFANLMNYSGMSKTLALALAH 417


>gnl|CDD|233013 TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein.
            Members of this protein family are uncharacterized
           tetratricopeptide repeat (TPR) proteins invariably found
           in heme biosynthesis gene clusters. The absence of any
           invariant residues other than Ala argues against this
           protein serving as an enzyme per se. The gene symbol
           hemY assigned in E. coli is unfortunate in that an
           unrelated protein, protoporphyrinogen oxidase (HemG in
           E. coli) is designated HemY in Bacillus subtilis
           [Unknown function, General].
          Length = 367

 Score = 25.7 bits (57), Expect = 4.6
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 6   VRCYRHEEAQRVLRLSLDEFALPKFYLLFGVSLCIPANNTIFIKSISETLAK--NEPHLT 63
           ++   H+EA++++  +L +   P+   L+G     P + +  IK   + L K  ++  L 
Sbjct: 254 IQLGDHDEAEKLIEEALKKEWDPELLRLYG--RLQPGDPSPLIKRAEKWLKKHPDDALLL 311

Query: 64  L 64
           L
Sbjct: 312 L 312


>gnl|CDD|176545 cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester
           phosphodiesterase domain repeat 1 of
           glycerophosphodiester phosphodiesterase-like protein
           SHV3 and SHV3-like proteins.  This subfamily corresponds
           to the glycerophosphodiester phosphodiesterase domain
           (GDPD) repeat 1 present in glycerophosphodiester
           phosphodiesterase (GP-GDE)-like protein SHV3 and
           SHV3-like proteins (SVLs), which may play an important
           role in cell wall organization. The prototype of this
           family is a glycosylphosphatidylinositol (GPI) anchored
           protein SHV3 encoded by shaven3 (shv3) gene from
           Arabidopsis thaliana. Members in this family show
           sequence homology to bacterial GP-GDEs (EC 3.1.4.46)
           that catalyze the hydrolysis of various
           glycerophosphodiesters, and produce
           sn-glycerol-3-phosphate (G3P) and the corresponding
           alcohols.  Both, SHV3 and SVLs, have two tandemly
           repeated GDPD domains whose biochemical functions remain
           unclear. The residues essential for interactions with
           the substrates and calcium ions in bacterial GP-GDEs are
           not conserved in SHV3 and SVLs, which suggests that the
           function of GDPD domains in these proteins might be
           distinct from those in typical bacterial GP-GDEs. In
           addition, the two tandem repeats show low sequence
           similarity to each other, suggesting they have different
           biochemical function. Most of the members of this family
           are Arabidopsis-specific gene products. To date, SHV3
           orthologues are only found in Physcomitrella patens.
           This family includes domain I, the first GDPD domain of
           SHV3 and SVLs.
          Length = 299

 Score = 25.8 bits (57), Expect = 4.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 47  FIKSISETLAKNEPHLTLEFLEE 69
           F+KSI   + +N   L   FL++
Sbjct: 168 FLKSIGGRVGRNGTKLVFRFLDK 190


>gnl|CDD|217867 pfam04062, P21-Arc, ARP2/3 complex ARPC3 (21 kDa) subunit.  The
           seven component ARP2/3 actin-organising complex is
           involved in actin assembly and function.
          Length = 175

 Score = 24.9 bits (55), Expect = 8.2
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 7   RCYRHEEAQRVL-RLSLDEFALP 28
           +C    EA++ L  L+LD FA+P
Sbjct: 86  KCMSKREAEKELNNLALDNFAIP 108


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,800,962
Number of extensions: 381871
Number of successful extensions: 459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 14
Length of query: 98
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 34
Effective length of database: 8,098,946
Effective search space: 275364164
Effective search space used: 275364164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)