BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14867
(224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P97526|NF1_RAT Neurofibromin OS=Rattus norvegicus GN=Nf1 PE=1 SV=1
Length = 2820
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 81/114 (71%), Gaps = 8/114 (7%)
Query: 92 KAAVITCVKLCKASTYINNLDSNNVVFALVQSVINELKAQLFTPHKPFSRGANYLNQDMD 151
++A I CVKLCKASTYIN + N+V+F LVQS++ +LK LF P KPFSRG+ D+D
Sbjct: 318 ESAAIACVKLCKASTYIN-WEDNSVIFLLVQSMVVDLKNLLFNPSKPFSRGSQ--PADVD 374
Query: 152 LMIECFVSGFRIKPHNNEALKVCLNPNSPLIYHFVLISSLYKSVIILSPGNQSW 205
LMI+C VS FRI PHNN+ K+CL NSP +H+VL++SL++ + N +W
Sbjct: 375 LMIDCLVSCFRISPHNNQHFKICLAQNSPSTFHYVLVNSLHRIIT-----NSAW 423
>sp|Q04690|NF1_MOUSE Neurofibromin OS=Mus musculus GN=Nf1 PE=1 SV=1
Length = 2841
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 77/102 (75%), Gaps = 3/102 (2%)
Query: 92 KAAVITCVKLCKASTYINNLDSNNVVFALVQSVINELKAQLFTPHKPFSRGANYLNQDMD 151
++A I CVKLCKASTYIN + N+V+F LVQS++ +LK LF P KPFSRG+ D+D
Sbjct: 318 ESAAIACVKLCKASTYIN-WEDNSVIFLLVQSMVVDLKNLLFNPSKPFSRGSQ--PADVD 374
Query: 152 LMIECFVSGFRIKPHNNEALKVCLNPNSPLIYHFVLISSLYK 193
LMI+C VS FRI PHNN+ K+CL NSP +H+VL++SL++
Sbjct: 375 LMIDCLVSCFRISPHNNQHFKICLAQNSPSTFHYVLVNSLHR 416
>sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2
Length = 2839
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 77/102 (75%), Gaps = 3/102 (2%)
Query: 92 KAAVITCVKLCKASTYINNLDSNNVVFALVQSVINELKAQLFTPHKPFSRGANYLNQDMD 151
++A I CVKLCKASTYIN + N+V+F LVQS++ +LK LF P KPFSRG+ D+D
Sbjct: 318 ESAAIACVKLCKASTYIN-WEDNSVIFLLVQSMVVDLKNLLFNPSKPFSRGSQ--PADVD 374
Query: 152 LMIECFVSGFRIKPHNNEALKVCLNPNSPLIYHFVLISSLYK 193
LMI+C VS FRI PHNN+ K+CL NSP +H+VL++SL++
Sbjct: 375 LMIDCLVSCFRISPHNNQHFKICLAQNSPSTFHYVLVNSLHR 416
>sp|Q0HA38|TT21B_MOUSE Tetratricopeptide repeat protein 21B OS=Mus musculus GN=Ttc21b PE=2
SV=1
Length = 1315
Score = 35.0 bits (79), Expect = 0.41, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 18 RHDKKRSYIDAVKKFIGPHNSSDKPLINFVSGWYLEMTAAVITCVKLCKASTYINN-LDS 76
RHDK R YID + K PH+S++ P++ W L++T K KA Y L
Sbjct: 123 RHDKAREYIDRMSKM--PHDSNEGPILK---AW-LDITRGKEPYAK--KALRYFEEGLQD 174
Query: 77 NNVVFALVQSVI 88
N +FAL+ V+
Sbjct: 175 GNDIFALLGKVL 186
>sp|Q8DHB0|KUP_THEEB Probable potassium transport system protein kup
OS=Thermosynechococcus elongatus (strain BP-1) GN=kup
PE=3 SV=1
Length = 625
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 106 TYINNLDSNNVVFALVQSVINELKAQLFTPHKPFSRGANYLNQDMDLMIECFVSGFRIKP 165
++I NL N+V L Q I A PH P S Y D+ + SGFR +P
Sbjct: 492 SFIQNLQHNHV---LHQQTIFIHLATANLPHVPLSEQLTYRVTDVGIYEIILTSGFRDRP 548
Query: 166 HNNEALKVC 174
AL+ C
Sbjct: 549 DLRLALETC 557
>sp|Q053V5|PURL_LEPBL Phosphoribosylformylglycinamidine synthase 2 OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550)
GN=purL PE=3 SV=1
Length = 745
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 10 GSGAPCSPRHDKKRSYIDAVKKF-------IGPHNSSDKPLINFVSGW 50
G GAP R K+ SY+DAVK + I P ++ L+N +S W
Sbjct: 372 GGGAPRYERETKRPSYLDAVKTWKPNSILDITPGANTKDVLLNILSSW 419
>sp|Q04QS4|PURL_LEPBJ Phosphoribosylformylglycinamidine synthase 2 OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=purL PE=3 SV=1
Length = 745
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 10 GSGAPCSPRHDKKRSYIDAVKKF-------IGPHNSSDKPLINFVSGW 50
G GAP R K+ SY+DAVK + I P ++ L+N +S W
Sbjct: 372 GGGAPRYERETKRPSYLDAVKTWKPNSILDITPGANTKDVLLNILSSW 419
>sp|Q2U3V3|XPOT_ASPOR Exportin-T OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=los1 PE=3 SV=2
Length = 1026
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 130 AQLFTPHKPFSRGANYLNQDMDLMIECFVSGFRIKPHNNEALKVCLNPNSPLIYHFVLIS 189
L+T ++P ++ A L + M M+E + F + +++C+ +S +YH LI
Sbjct: 502 GSLYTKNQPNNQAAERLIEMMSRMVESDIRSFTHPATQLQYMEICVRYSSFFLYHTNLIP 561
Query: 190 SLYKSVIIL------SPGNQSWFL 207
+ +S + L +SW+L
Sbjct: 562 GVLESFLQLVHHPTKKVKTRSWYL 585
>sp|B2VGJ3|UPPP_ERWT9 Undecaprenyl-diphosphatase OS=Erwinia tasmaniensis (strain DSM
17950 / Et1/99) GN=uppP PE=3 SV=1
Length = 273
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 83 LVQSVINELKAAVITCVKLCKASTYINNLDSNNVVFALVQSVINELKAQLFTPHKPFSRG 142
L+ ++ + A VI + + T N + NV++ALV + + A+L P +P S G
Sbjct: 91 LIHILLGMVPAVVIGLLLHDQIKTLFNPV---NVMYALVVGGVLLIAAELLKPKRPKSPG 147
Query: 143 ANYLNQDMDLMIECF 157
+ + MI CF
Sbjct: 148 VDDITYRQAFMIGCF 162
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,748,237
Number of Sequences: 539616
Number of extensions: 3029107
Number of successful extensions: 6070
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6053
Number of HSP's gapped (non-prelim): 16
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)