Query         psy14867
Match_columns 224
No_of_seqs    77 out of 79
Neff          4.0 
Searched_HMMs 46136
Date          Fri Aug 16 22:49:44 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy14867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14867hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG1826|consensus               99.0   1E-10 2.2E-15  125.1   3.4  168    2-211   273-454 (2724)
  2 KOG1826|consensus               98.8 2.9E-09 6.3E-14  114.3   3.3  153   49-216   259-418 (2724)
  3 KOG2882|consensus               19.4      44 0.00096   31.6   0.6   26  151-176   227-252 (306)
  4 PF02404 SCF:  Stem cell factor  17.2 2.2E+02  0.0049   26.7   4.5   85   74-168    34-122 (273)
  5 PF12295 Symplekin_C:  Sympleki  15.9 1.7E+02  0.0037   25.2   3.3   48  153-204    55-109 (183)
  6 PF11522 Pik1:  Yeast phosphati  13.4 1.3E+02  0.0028   21.4   1.6   20  118-137     4-23  (51)
  7 PF14769 CLAMP:  Flagellar C1a   12.9 3.8E+02  0.0083   20.5   4.2   38  122-160    39-79  (101)
  8 PLN03083 E3 UFM1-protein ligas  12.0 8.6E+02   0.019   26.2   7.6  107   19-138   678-803 (803)
  9 KOG1988|consensus               11.5   2E+03   0.042   24.2  10.6  110   79-195   680-797 (970)
 10 PF14661 HAUS6_N:  HAUS augmin-  11.1 1.7E+02  0.0037   26.0   2.0   66  150-221    39-112 (247)

No 1  
>KOG1826|consensus
Probab=99.04  E-value=1e-10  Score=125.14  Aligned_cols=168  Identities=16%  Similarity=0.046  Sum_probs=144.1

Q ss_pred             hHHHHHhhCCCCCCCcchhhhhhhHHHHHHhhCCCCCCCccccccccchhhHHHHHHHHhHHHhhhhhhccCCCCchHHH
Q psy14867          2 VLEEIVNAGSGAPCSPRHDKKRSYIDAVKKFIGPHNSSDKPLINFVSGWYLEMTAAVITCVKLCKASTYINNLDSNNVVF   81 (224)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WplQ~T~llIlcp~L~kaatyin~~~~~n~~~   81 (224)
                      .++||.|--+         .++.+.+...|.+.+| +.+++..          |..+|.|.+.++.++|  + +      
T Consensus       273 ~~~~i~nl~~---------dnn~~~k~s~k~l~s~-~~d~~~S----------t~~~is~i~~~~~~h~--~-s------  323 (2724)
T KOG1826|consen  273 EYYEIFNLLK---------DNNNEHKKSLKTLNST-LFDEIHS----------TFNVISMITTNQNAHQ--G-S------  323 (2724)
T ss_pred             HHHHHHHHHh---------cccchHHHHHHHHHhh-hhhhhhh----------HHHHHHHHHhcccccc--C-c------
Confidence            5678888332         2388999999999999 8899998          9999999999999988  2 1      


Q ss_pred             HHHHHHHHHHHHHhhhhccccceeeeecCCCCChHHHHHHHHHHHHHHHhccCCCCCCcCCCCcchhhHHHHHHHHHHhh
Q psy14867         82 ALVQSVINELKAAVITCVKLCKASTYINNLDSNNVVFALVQSVINELKAQLFTPHKPFSRGANYLNQDMDLMIECFVSGF  161 (224)
Q Consensus        82 ~Lvqs~~~dl~aa~i~~V~LCKAATyV~~~d~~~~lr~Lv~di~~dLK~~LFnpskPfs~~~g~~~~Dv~LmiDcfVA~F  161 (224)
                                .++..+++.+|++++|++..+++++.+.  +...++++..+++|.||+++++|+..++. ++.+|-++++
T Consensus       324 ----------ss~s~~~~s~~~~s~~~~nn~qn~v~~~--~sf~~~~~a~l~sp~r~~s~~~~~n~~~~-ls~~ss~~~~  390 (2724)
T KOG1826|consen  324 ----------SSPSSSSPSSPPSSSSSDNNNQNIVAKS--LSFSHHQSAILQSPERKLSSSWTTNSQSS-LSLSSSTSNS  390 (2724)
T ss_pred             ----------cchhhhcccCCcccccccCCCccccccc--cchhcchhhhhcCccccCCCCCcccchhe-ecCcchhcce
Confidence                      4566779999999999999886667676  66899999999999999999999999999 9999999999


Q ss_pred             ccCCCCccccccccCCCCChhHHHHHHHHHHHHhh--------------hcCCCCCCCcccCCC
Q psy14867        162 RIKPHNNEALKVCLNPNSPLIYHFVLISSLYKSVI--------------ILSPGNQSWFLVTGS  211 (224)
Q Consensus       162 RlnP~n~~lfkvCL~~~SP~~fk~vlVkAl~~I~~--------------~~te~rLpWwP~Id~  211 (224)
                      +.+|++++..+.|+++..|.+++++.+.+++...+              +...++.-|||.-..
T Consensus       391 ~~ts~~~~a~~~~ld~~~p~t~~~~~s~sl~~~~~~t~~f~lq~~~~f~a~r~a~~l~~~ns~~  454 (2724)
T KOG1826|consen  391 TTTSFSTHAQPGELDPSLPDTPNITISASLLLSQTPTPTFQLQQRLNFAAARAAAALSPSNSTP  454 (2724)
T ss_pred             eccccceeecccccCCCCCcccceeehHhHHhhCCCccchhhhccccchhhhcccccCCccccc
Confidence            99999999999999999999999999999976653              123346778887766


No 2  
>KOG1826|consensus
Probab=98.78  E-value=2.9e-09  Score=114.33  Aligned_cols=153  Identities=10%  Similarity=-0.050  Sum_probs=121.3

Q ss_pred             chhhHHHHHHHHhHHHhhhhhhccCCCCchHH---HHHHHHHH-HHH--HHHhhhhccccceeeeecCCCCChHHHHHHH
Q psy14867         49 GWYLEMTAAVITCVKLCKASTYINNLDSNNVV---FALVQSVI-NEL--KAAVITCVKLCKASTYINNLDSNNVVFALVQ  122 (224)
Q Consensus        49 ~WplQ~T~llIlcp~L~kaatyin~~~~~n~~---~~Lvqs~~-~dl--~aa~i~~V~LCKAATyV~~~d~~~~lr~Lv~  122 (224)
                      +||+| ..++++||+..-...=+-. |-||.-   ..-+++.. .+.  ..+++.+++.|++++|    + ++.....++
T Consensus       259 v~p~q-m~~im~~P~~~~~i~nl~~-dnn~~~k~s~k~l~s~~~d~~~St~~~is~i~~~~~~h~----~-sss~s~~~~  331 (2724)
T KOG1826|consen  259 VYPAQ-MFWIMARPAEYYEIFNLLK-DNNNEHKKSLKTLNSTLFDEIHSTFNVISMITTNQNAHQ----G-SSSPSSSSP  331 (2724)
T ss_pred             HHHHH-HHHHHhCHHHHHHHHHHHh-cccchHHHHHHHHHhhhhhhhhhHHHHHHHHHhcccccc----C-ccchhhhcc
Confidence            59999 7899999966544411111 113322   22233333 222  2347789999999999    2 344566889


Q ss_pred             HHHHHHHHhccCCCCCCcCCCCcchhhHHHHHHHHHHhhccCCCCccccccccCCCCChhHHHHHHHHHHHHhhhcCCCC
Q psy14867        123 SVINELKAQLFTPHKPFSRGANYLNQDMDLMIECFVSGFRIKPHNNEALKVCLNPNSPLIYHFVLISSLYKSVIILSPGN  202 (224)
Q Consensus       123 di~~dLK~~LFnpskPfs~~~g~~~~Dv~LmiDcfVA~FRlnP~n~~lfkvCL~~~SP~~fk~vlVkAl~~I~~~~te~r  202 (224)
                      +.--+.++..+|+++|+.+++    .+++.|.+|+++++|..|++.+.+..|. .+.|..++.+.+.+..+++   +.+.
T Consensus       332 s~~~~s~~~~nn~qn~v~~~~----sf~~~~~a~l~sp~r~~s~~~~~n~~~~-ls~~ss~~~~~~ts~~~~a---~~~~  403 (2724)
T KOG1826|consen  332 SSPPSSSSSDNNNQNIVAKSL----SFSHHQSAILQSPERKLSSSWTTNSQSS-LSLSSSTSNSTTTSFSTHA---QPGE  403 (2724)
T ss_pred             cCCcccccccCCCcccccccc----chhcchhhhhcCccccCCCCCcccchhe-ecCcchhcceeccccceee---cccc
Confidence            999999999999999999884    5999999999999999999999999999 8889999999999999988   8889


Q ss_pred             CCCcccCCC-Ccchh
Q psy14867        203 QSWFLVTGS-YPRQA  216 (224)
Q Consensus       203 LpWwP~Id~-Y~~~~  216 (224)
                      +.|||+.+. |+..+
T Consensus       404 ld~~~p~t~~~~~s~  418 (2724)
T KOG1826|consen  404 LDPSLPDTPNITISA  418 (2724)
T ss_pred             cCCCCCcccceeehH
Confidence            999999999 99877


No 3  
>KOG2882|consensus
Probab=19.42  E-value=44  Score=31.63  Aligned_cols=26  Identities=23%  Similarity=0.404  Sum_probs=19.9

Q ss_pred             HHHHHHHHHhhccCCCCccccccccC
Q psy14867        151 DLMIECFVSGFRIKPHNNEALKVCLN  176 (224)
Q Consensus       151 ~LmiDcfVA~FRlnP~n~~lfkvCL~  176 (224)
                      +-|.||+..-|+|+|..+=.+..=|+
T Consensus       227 ~~m~~~l~~~~~i~psRt~mvGDRL~  252 (306)
T KOG2882|consen  227 TFMFEYLLEKFNIDPSRTCMVGDRLD  252 (306)
T ss_pred             HHHHHHHHHHcCCCcceEEEEcccch
Confidence            57999999999999987644444443


No 4  
>PF02404 SCF:  Stem cell factor;  InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=17.24  E-value=2.2e+02  Score=26.66  Aligned_cols=85  Identities=18%  Similarity=0.182  Sum_probs=54.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhhhccccceeeeecCCCC---ChHHHHHHHHHHHHHHHhccCCCCCCcCCCCcchhh-
Q psy14867         74 LDSNNVVFALVQSVINELKAAVITCVKLCKASTYINNLDS---NNVVFALVQSVINELKAQLFTPHKPFSRGANYLNQD-  149 (224)
Q Consensus        74 ~~~~n~~~~Lvqs~~~dl~aa~i~~V~LCKAATyV~~~d~---~~~lr~Lv~di~~dLK~~LFnpskPfs~~~g~~~~D-  149 (224)
                      .|.-+.+..|++-+=+|-+-.+          .||+..|+   .=-++.+|..++.-|++++=..+.--+.-.+|.++| 
T Consensus        34 TDdv~~i~~L~~NiP~DY~i~l----------~Yvp~~d~lp~~CWl~lmV~~l~~sL~~L~~kF~niS~~~sN~sIi~~  103 (273)
T PF02404_consen   34 TDDVKDISKLVANIPKDYKIPL----------KYVPKMDGLPGHCWLHLMVFELENSLTNLLDKFSNISSNLSNYSIIDK  103 (273)
T ss_dssp             -CCHHHHHHHHHTS-TT--EEE----------EE-TTTTTS-HHHCHHHHHHHHHHHHHHHHCTS-S-SSSS-HHHHHHH
T ss_pred             chhhHHHHHHHcCCCcccEeee----------ecccCCCCCCCceeeeeehHHHHHHHHHHHHHHhhhcccccchHHHHH
Confidence            3433455555555544444333          89999873   236889999999999999977766544334677776 


Q ss_pred             HHHHHHHHHHhhccCCCCc
Q psy14867        150 MDLMIECFVSGFRIKPHNN  168 (224)
Q Consensus       150 v~LmiDcfVA~FRlnP~n~  168 (224)
                      .-.++|-++.|-+-+-.++
T Consensus       104 l~kIlddlr~Cl~~~~~~~  122 (273)
T PF02404_consen  104 LIKILDDLRECLEENDKEN  122 (273)
T ss_dssp             HHHHHHHHHHHCCCCTSTT
T ss_pred             HHHHHHHHHHHHhccchhh
Confidence            6889999999988765444


No 5  
>PF12295 Symplekin_C:  Symplekin tight junction protein C terminal;  InterPro: IPR022075  This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens. 
Probab=15.93  E-value=1.7e+02  Score=25.17  Aligned_cols=48  Identities=27%  Similarity=0.320  Sum_probs=35.7

Q ss_pred             HHHHHHHhhccCCCC-c------cccccccCCCCChhHHHHHHHHHHHHhhhcCCCCCC
Q psy14867        153 MIECFVSGFRIKPHN-N------EALKVCLNPNSPLIYHFVLISSLYKSVIILSPGNQS  204 (224)
Q Consensus       153 miDcfVA~FRlnP~n-~------~lfkvCL~~~SP~~fk~vlVkAl~~I~~~~te~rLp  204 (224)
                      =+|-+|++++++|.+ .      .+...|++... .--.=++..++-.|+   ++..+|
T Consensus        55 p~ElLv~lH~id~~~~~~~k~~~~a~~~Cf~~~~-vf~~evla~~l~ql~---~~~~lP  109 (183)
T PF12295_consen   55 PSELLVALHNIDPEKDVPLKKIIEALDLCFSMRD-VFTQEVLASALQQLV---EQPPLP  109 (183)
T ss_pred             HHHHHHHHHhCCccccccHHHHHHHHHHHHcccc-cCCHHHHHHHHHHHH---CCCCCc
Confidence            467789999998764 2      67889998665 333568888999999   776665


No 6  
>PF11522 Pik1:  Yeast phosphatidylinositol-4-OH kinase Pik1;  InterPro: IPR021601  Pik1 is a regulator of membrane traffic and participates in the mating-pheromone signal-transduction cascade. The protein is localised to the nucleus and cytoplasm in the Golgi. Pik1 is thought to have an actin-independent role in membrane transport []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2JU0_B.
Probab=13.44  E-value=1.3e+02  Score=21.41  Aligned_cols=20  Identities=35%  Similarity=0.610  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHhccCCCC
Q psy14867        118 FALVQSVINELKAQLFTPHK  137 (224)
Q Consensus       118 r~Lv~di~~dLK~~LFnpsk  137 (224)
                      |..+..+.++|+..|||.+.
T Consensus         4 Fqv~RRv~NklQ~ilFn~~~   23 (51)
T PF11522_consen    4 FQVCRRVINKLQHILFNTSS   23 (51)
T ss_dssp             THHHHHHHHHHT--SS-SS-
T ss_pred             hHHHHHHHHHHHHHHhCCCc
Confidence            56788999999999999884


No 7  
>PF14769 CLAMP:  Flagellar C1a complex subunit C1a-32
Probab=12.91  E-value=3.8e+02  Score=20.45  Aligned_cols=38  Identities=18%  Similarity=0.342  Sum_probs=25.1

Q ss_pred             HHHHHHHHHhccC--CCCC-CcCCCCcchhhHHHHHHHHHHh
Q psy14867        122 QSVINELKAQLFT--PHKP-FSRGANYLNQDMDLMIECFVSG  160 (224)
Q Consensus       122 ~di~~dLK~~LFn--pskP-fs~~~g~~~~Dv~LmiDcfVA~  160 (224)
                      .+....+|++|..  +.+| ++ ..=++..++..++|++...
T Consensus        39 ~~~~~~fk~~l~~~sv~rpp~~-~~iFs~~~~~~i~~y~~~t   79 (101)
T PF14769_consen   39 EDSFKYFKELLLRHSVQRPPFS-IGIFSVDQVKAIIDYFHNT   79 (101)
T ss_pred             HHHHHHHHHHHHHhccCCCCcc-cCcCCHHHHHHHHHHHHHH
Confidence            3445788888876  3344 33 2223568899999999877


No 8  
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=12.04  E-value=8.6e+02  Score=26.19  Aligned_cols=107  Identities=21%  Similarity=0.270  Sum_probs=62.7

Q ss_pred             hhhh--hhhHHHHHHhhCCC-CCCCccccccccchhhHHHHHHHHhHHHhhhhhhccC--CCCchHHHHHHHHHH-----
Q psy14867         19 HDKK--RSYIDAVKKFIGPH-NSSDKPLINFVSGWYLEMTAAVITCVKLCKASTYINN--LDSNNVVFALVQSVI-----   88 (224)
Q Consensus        19 ~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~WplQ~T~llIlcp~L~kaatyin~--~~~~n~~~~Lvqs~~-----   88 (224)
                      .+||  |+.+-+-|+.|..+ ..-..|.            ++|-+++=|+.+... |-  ..+...+..+++.++     
T Consensus       678 ~DKK~eR~ll~~hrk~L~eQl~~~~DPa------------~~L~l~v~LLf~~~~-~~~lhApGR~V~~~i~~L~~~l~~  744 (803)
T PLN03083        678 LDKKLERTLLHSYRKDLTSQVSTESDPV------------ALLPKVVSLLYVQVH-NKALQAPGRAISAAISRLKDKLPD  744 (803)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhccCHH------------HHHHHHHHHHHHHHh-cccccCCcchHHHHHHHHHhhCCH
Confidence            4666  78888888888644 1223333            244455555554422 22  233345555665555     


Q ss_pred             ------HHHHHHhhhhccccceeeeecC---CCCChHHHHHHHHHHHHHHHhccCCCCC
Q psy14867         89 ------NELKAAVITCVKLCKASTYINN---LDSNNVVFALVQSVINELKAQLFTPHKP  138 (224)
Q Consensus        89 ------~dl~aa~i~~V~LCKAATyV~~---~d~~~~lr~Lv~di~~dLK~~LFnpskP  138 (224)
                            .+-+.+.+.+..+-.|++--..   ++...-.+-..+.+..+||++..+.+||
T Consensus       745 ~~~~~L~~yq~~vv~~L~~~~~~~~~e~~~~~~~~~~~~e~L~~l~p~lk~l~l~~~~~  803 (803)
T PLN03083        745 SAYKTLTDYHSATVTLLALMSAATGEEHDCSSDRILTKRELLESLMPPLKSLVLGDSQP  803 (803)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCcccccchhhhHHHHHHHHhhHHHHHHhcccCCC
Confidence                  4455566666655555433222   2224567778999999999999998886


No 9  
>KOG1988|consensus
Probab=11.52  E-value=2e+03  Score=24.15  Aligned_cols=110  Identities=14%  Similarity=0.094  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccceeeeecCCC-CChHHHHHHHHHHHHHHHhcc-CCCCCCcCCCCcch------hhH
Q psy14867         79 VVFALVQSVINELKAAVITCVKLCKASTYINNLD-SNNVVFALVQSVINELKAQLF-TPHKPFSRGANYLN------QDM  150 (224)
Q Consensus        79 ~~~~Lvqs~~~dl~aa~i~~V~LCKAATyV~~~d-~~~~lr~Lv~di~~dLK~~LF-npskPfs~~~g~~~------~Dv  150 (224)
                      ++...+|.++++.+..+-|+.|||+|+---+... ..-.+-..-=.+..++-+.|+ .|+-+.-...|...      .=+
T Consensus       680 ~is~ql~k~~ke~~~~a~~~~~l~~sSF~Ad~~tf~lv~l~~~~csl~~~~vr~l~k~~~~e~~~~~~~~~~a~~cs~~q  759 (970)
T KOG1988|consen  680 RISNQLQKLAKEFDMLATCYIDLYDSSFDADSVTFLLVELTSQSCSLVEHAVRRLWKVPESEKFNILGNTNEARNCSHLQ  759 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCceeeeeehHHHHhhHHHHHHHHHHHcCCCChHheecCCCcchhhhHHHH
Confidence            5567788888999999999999999982111100 001111111123333333333 35554322222222      012


Q ss_pred             HHHHHHHHHhhccCCCCccccccccCCCCChhHHHHHHHHHHHHh
Q psy14867        151 DLMIECFVSGFRIKPHNNEALKVCLNPNSPLIYHFVLISSLYKSV  195 (224)
Q Consensus       151 ~LmiDcfVA~FRlnP~n~~lfkvCL~~~SP~~fk~vlVkAl~~I~  195 (224)
                      .=|.--+.+..|.       .+.|-..+++.+++=+++.++-.+.
T Consensus       760 rr~~q~~~~~lr~-------~~~~n~~~~~~~h~~~i~s~i~~l~  797 (970)
T KOG1988|consen  760 RRMVQMLLSILRD-------AESCNYKLSSSMHKEEIMSAIMKLT  797 (970)
T ss_pred             HHHHHHHHHHhhh-------hhhccccchhHHHHHHHHHHHHHHH
Confidence            2244455554453       2344444577888889999887666


No 10 
>PF14661 HAUS6_N:  HAUS augmin-like complex subunit 6 N-terminus
Probab=11.08  E-value=1.7e+02  Score=25.97  Aligned_cols=66  Identities=17%  Similarity=0.295  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhhccCCCCc-cccccc---cCCCCChhHHHHHHHHHHHHhhhcCCCCCCCcccCCC----Ccchhhhhhh
Q psy14867        150 MDLMIECFVSGFRIKPHNN-EALKVC---LNPNSPLIYHFVLISSLYKSVIILSPGNQSWFLVTGS----YPRQAWKFIL  221 (224)
Q Consensus       150 v~LmiDcfVA~FRlnP~n~-~lfkvC---L~~~SP~~fk~vlVkAl~~I~~~~te~rLpWwP~Id~----Y~~~~~~~~~  221 (224)
                      +..+.=+|.+.  +||... ..|+.|   +++.+...|+-++++.|-.|.   .++.++=+|.|-.    .|-|+ ||+.
T Consensus        39 fe~vl~~Lf~~--lD~~~~~~~f~~~wP~~d~~q~~~fR~~~~~~L~~l~---~~g~l~~~~~v~~s~l~~p~G~-KF~~  112 (247)
T PF14661_consen   39 FEWVLHFLFTI--LDPEEAKKKFRPCWPPLDKKQSANFRKALFRWLKELK---KNGVLGRFPKVRKSMLDSPGGE-KFIE  112 (247)
T ss_pred             HHHHHHHHHHH--cCHHHHHHHhhccCCCCCchhhHHHHHHHHHHHHHHH---HcCCCCCCCceeeeeeecCCCh-hHHH
Confidence            34555555555  467665 666644   567778899999999999999   8889988888876    67787 8863


Done!