Query psy14867
Match_columns 224
No_of_seqs 77 out of 79
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 22:50:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ju0_B Phosphatidylinositol 4- 33.0 22 0.00076 24.4 2.0 25 118-142 5-29 (52)
2 1scf_A Stem cell factor; steel 15.7 2.3E+02 0.0078 25.3 5.4 58 106-163 56-117 (273)
3 1vdy_A Hypothetical protein (R 13.7 3.6E+02 0.012 21.3 5.7 42 98-139 94-135 (140)
4 4gof_A Small glutamine-rich te 8.5 4.6E+02 0.016 17.6 4.0 44 120-169 5-49 (52)
5 1oey_J P40-PHOX, neutrophil cy 7.9 1.8E+02 0.0063 22.6 1.9 23 147-173 68-90 (107)
6 2wh0_Q Pkcev3, protein kinase 7.7 2.7E+02 0.0093 16.9 2.2 24 11-34 4-27 (31)
7 3e9v_A Protein BTG2; B-cell tr 6.8 1.2E+02 0.0041 23.7 0.4 53 88-145 3-58 (120)
8 1th5_A NIFU1; iron-sulfur clus 6.5 1.6E+02 0.0053 21.0 0.8 23 22-44 9-31 (74)
9 2kw0_A CCMH protein; oxidoredu 6.4 4.4E+02 0.015 19.6 3.4 36 111-161 35-70 (90)
10 2hl7_A Cytochrome C-type bioge 6.2 4.8E+02 0.017 19.0 3.5 36 111-161 38-73 (84)
No 1
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=33.03 E-value=22 Score=24.44 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhccCCCCCCcCC
Q psy14867 118 FALVQSVINELKAQLFTPHKPFSRG 142 (224)
Q Consensus 118 r~Lv~di~~dLK~~LFnpskPfs~~ 142 (224)
|..+..+.++|+..|||.+.+..+.
T Consensus 5 Fqv~Rr~~NklQ~ilFn~~~~~~~~ 29 (52)
T 2ju0_B 5 FQVARRVLNNLQTNLFNTSSGSDKN 29 (52)
T ss_dssp THHHHHHHHHHTCCSSCSSCCCCTT
T ss_pred hHHHHHHHHHHHHHHhCCCccccch
Confidence 5688999999999999998875443
No 2
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=15.66 E-value=2.3e+02 Score=25.27 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=43.6
Q ss_pred eeecCCCC---ChHHHHHHHHHHHHHHHhccCCCCCCcCCCCcchhh-HHHHHHHHHHhhcc
Q psy14867 106 TYINNLDS---NNVVFALVQSVINELKAQLFTPHKPFSRGANYLNQD-MDLMIECFVSGFRI 163 (224)
Q Consensus 106 TyV~~~d~---~~~lr~Lv~di~~dLK~~LFnpskPfs~~~g~~~~D-v~LmiDcfVA~FRl 163 (224)
-||+..|+ .=-+..+|..+++-|++++=..+.--+.-.+|.++| .--|.|-++.|...
T Consensus 56 kYVP~md~LP~hCWv~lmV~~L~~SL~~Ll~KF~NIS~~lsNysiI~~lvkIlqdLr~cl~~ 117 (273)
T 1scf_A 56 KYVPGMDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKE 117 (273)
T ss_dssp ECCTTTTTSCGGGTHHHHHHHHHHHHHHHHTTSCSCCSSCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred ccccCCcCCCCceeeehhHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHhcc
Confidence 89999885 236899999999999999977666533223667777 47788888888764
No 3
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=13.67 E-value=3.6e+02 Score=21.35 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=32.4
Q ss_pred hccccceeeeecCCCCChHHHHHHHHHHHHHHHhccCCCCCC
Q psy14867 98 CVKLCKASTYINNLDSNNVVFALVQSVINELKAQLFTPHKPF 139 (224)
Q Consensus 98 ~V~LCKAATyV~~~d~~~~lr~Lv~di~~dLK~~LFnpskPf 139 (224)
.|+-|+.=.|++....+.-.-..|.+-..||-++||+...+-
T Consensus 94 ~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~~~ 135 (140)
T 1vdy_A 94 AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEENGS 135 (140)
T ss_dssp HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCCCC
Confidence 588999999996532134456689999999999999977664
No 4
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=8.50 E-value=4.6e+02 Score=17.61 Aligned_cols=44 Identities=23% Similarity=0.429 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhccCCCCCCcCCCCcchhh-HHHHHHHHHHhhccCCCCcc
Q psy14867 120 LVQSVINELKAQLFTPHKPFSRGANYLNQD-MDLMIECFVSGFRIKPHNNE 169 (224)
Q Consensus 120 Lv~di~~dLK~~LFnpskPfs~~~g~~~~D-v~LmiDcfVA~FRlnP~n~~ 169 (224)
||..|++=|+..+=++. ++. +..| ++.-++|+-..|-++|.+.+
T Consensus 5 la~sIi~FL~~~~~~~~--~s~----D~~ESleVAiqCi~~aF~v~~~d~~ 49 (52)
T 4gof_A 5 LAYAIIQFLHDQLRHGG--LSS----DAQESLEVAIQCLETAFGVTVEDSD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHSC--CCH----HHHHHHHHHHHHHHHHHTCCSSCCT
T ss_pred HHHHHHHHHHHhcccCC--cCH----hHHHHHHHHHHHHHHHcCCCccccc
Confidence 56666666666653322 221 2233 79999999999999987754
No 5
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=7.87 E-value=1.8e+02 Score=22.60 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHhhccCCCCcccccc
Q psy14867 147 NQDMDLMIECFVSGFRIKPHNNEALKV 173 (224)
Q Consensus 147 ~~Dv~LmiDcfVA~FRlnP~n~~lfkv 173 (224)
..|++||+.+- |..|....+||=
T Consensus 68 deDv~lmi~~s----r~~~s~k~~FPW 90 (107)
T 1oey_J 68 DEDVALMVRQA----RGLPSQKRLFPW 90 (107)
T ss_dssp HHHHHHHHHHC----CCCCCTTCBCSS
T ss_pred hHHHHHHHHHh----hcCcccccccce
Confidence 48999999886 998888777763
No 6
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=7.66 E-value=2.7e+02 Score=16.93 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=19.1
Q ss_pred CCCCCCcchhhhhhhHHHHHHhhC
Q psy14867 11 SGAPCSPRHDKKRSYIDAVKKFIG 34 (224)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~ 34 (224)
..+|-||-...-|..-..++|+++
T Consensus 4 ksaptspcdqeikelennirkals 27 (31)
T 2wh0_Q 4 KSAPTSPCDQEIKELENNIRKALS 27 (31)
T ss_pred ccCCCCchHHHHHHHHHHHHHHhc
Confidence 357778877777888899999985
No 7
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=6.79 E-value=1.2e+02 Score=23.69 Aligned_cols=53 Identities=21% Similarity=0.356 Sum_probs=29.8
Q ss_pred HHHHHHHhhhhccccceeeeecCCCCChHHHHHHHHHHHHHHHhc---cCCCCCCcCCCCc
Q psy14867 88 INELKAAVITCVKLCKASTYINNLDSNNVVFALVQSVINELKAQL---FTPHKPFSRGANY 145 (224)
Q Consensus 88 ~~dl~aa~i~~V~LCKAATyV~~~d~~~~lr~Lv~di~~dLK~~L---FnpskPfs~~~g~ 145 (224)
+.++++|+.=.+.+-+...-++ ...+......+++-|.+.. |+|.+|. +|+||
T Consensus 3 ~~EI~~av~Fl~~~l~~~~~l~----~~~v~~F~~~L~~~L~~~y~~HW~P~~P~-kGsay 58 (120)
T 3e9v_A 3 LPEIAAAVGFLSSLLRTRGCVS----EQRLKVFSGALQEALTEHYKHHWFPEKPS-KGSGY 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHHHTTSCCTTSTT-TTHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCC----HHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCCce
Confidence 3455555443444433322222 2345667777777777754 5699996 46654
No 8
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=6.46 E-value=1.6e+02 Score=21.03 Aligned_cols=23 Identities=0% Similarity=0.265 Sum_probs=18.7
Q ss_pred hhhhHHHHHHhhCCCCCCCcccc
Q psy14867 22 KRSYIDAVKKFIGPHNSSDKPLI 44 (224)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~ 44 (224)
=+..+|.||-.|..||+|+=.+.
T Consensus 9 V~~~L~~iRP~L~~dGGGdvelv 31 (74)
T 1th5_A 9 VEKVLNEIRPYLAGTGGGGLQFL 31 (74)
T ss_dssp HHHHHTTTHHHHTTTTCCCCCCC
T ss_pred HHHHHHHHhHHHHhcCCCcEEEE
Confidence 36788899999999976777776
No 9
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=6.45 E-value=4.4e+02 Score=19.59 Aligned_cols=36 Identities=11% Similarity=0.284 Sum_probs=24.7
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCCCCCCcCCCCcchhhHHHHHHHHHHhh
Q psy14867 111 LDSNNVVFALVQSVINELKAQLFTPHKPFSRGANYLNQDMDLMIECFVSGF 161 (224)
Q Consensus 111 ~d~~~~lr~Lv~di~~dLK~~LFnpskPfs~~~g~~~~Dv~LmiDcfVA~F 161 (224)
.|++.. ++.|+..+++++|=.+.. . +=++|+||+.|
T Consensus 35 ~dSnA~---iA~dlR~~Vre~l~~G~S---------d---~eI~~~mv~RY 70 (90)
T 2kw0_A 35 ADSNSM---IATDLRQKVYELMQEGKS---------K---KEIVDYMVARY 70 (90)
T ss_dssp TSCCCH---HHHHHHHHHHHHHHHTCC---------H---HHHHHHHHHHH
T ss_pred hhcCcH---HHHHHHHHHHHHHHcCCC---------H---HHHHHHHHHhc
Confidence 444555 889999999888855432 1 34678888877
No 10
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=6.23 E-value=4.8e+02 Score=18.99 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=24.3
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCCCCCCcCCCCcchhhHHHHHHHHHHhh
Q psy14867 111 LDSNNVVFALVQSVINELKAQLFTPHKPFSRGANYLNQDMDLMIECFVSGF 161 (224)
Q Consensus 111 ~d~~~~lr~Lv~di~~dLK~~LFnpskPfs~~~g~~~~Dv~LmiDcfVA~F 161 (224)
.|+++. ++.|+..+++++|=.+.. . +=++|+||+.|
T Consensus 38 ~dSna~---iA~dlR~~V~~~l~~G~s---------d---~eI~~~~v~RY 73 (84)
T 2hl7_A 38 ADSNAP---IAADLRKQIYGQLQQGKS---------D---GEIVDYMVARY 73 (84)
T ss_dssp TTCCSH---HHHHHHHHHHHHHHHTCC---------H---HHHHHHHHHHH
T ss_pred hhcCcH---HHHHHHHHHHHHHHcCCC---------H---HHHHHHHHHhc
Confidence 444565 888999999888855432 1 34677788776
Done!