Query psy14867
Match_columns 224
No_of_seqs 77 out of 79
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 22:50:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14867.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14867hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kyza1 a.4.5.29 (A:13-119) Ca 22.0 26 0.0019 25.0 2.6 36 2-37 32-76 (107)
2 d1scfa_ a.26.1.2 (A:) Stem cel 21.2 71 0.0052 23.8 5.1 59 106-164 21-83 (131)
3 d1ku1a_ a.118.3.1 (A:) ARF gua 10.1 2.1E+02 0.015 22.0 5.4 70 146-224 106-183 (211)
4 d1fp1d1 a.4.5.29 (D:19-128) Ch 8.3 89 0.0065 22.1 2.2 36 2-37 31-78 (110)
5 d1sj8a2 a.216.1.1 (A:658-782) 7.7 3.3E+02 0.024 18.5 7.8 49 82-132 77-125 (125)
6 d1pbya1 a.3.1.7 (A:1-85) Quino 7.6 1.1E+02 0.0081 20.4 2.4 23 146-168 52-74 (85)
7 d2vglb_ a.118.1.10 (B:) Adapti 7.4 2.2E+02 0.016 23.9 4.8 64 121-195 116-185 (579)
8 d1jmxa1 a.3.1.7 (A:2-85) Quino 6.9 1.2E+02 0.0087 20.2 2.2 23 146-168 52-74 (84)
9 d2cwja1 d.79.1.1 (A:4-119) Put 6.5 3.2E+02 0.023 17.8 4.5 49 84-140 46-94 (116)
10 d2daqa1 b.34.9.2 (A:8-104) His 5.7 62 0.0045 21.4 0.1 11 199-209 11-21 (97)
No 1
>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=22.01 E-value=26 Score=25.01 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=27.9
Q ss_pred hHHHHHhhCCCCCCCc--------c-hhhhhhhHHHHHHhhCCCC
Q psy14867 2 VLEEIVNAGSGAPCSP--------R-HDKKRSYIDAVKKFIGPHN 37 (224)
Q Consensus 2 ~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~ 37 (224)
|.+.|.++|.|+|.|+ . +..+-.++|-+.|.|..||
T Consensus 32 I~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~ 76 (107)
T d1kyza1 32 LLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYI 76 (107)
T ss_dssp HHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcC
Confidence 6678889999988763 2 3345579999999998875
No 2
>d1scfa_ a.26.1.2 (A:) Stem cell factor, SCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.15 E-value=71 Score=23.83 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=42.5
Q ss_pred eeecCCCC---ChHHHHHHHHHHHHHHHhccCCCCCCcCCCCcchhh-HHHHHHHHHHhhccC
Q psy14867 106 TYINNLDS---NNVVFALVQSVINELKAQLFTPHKPFSRGANYLNQD-MDLMIECFVSGFRIK 164 (224)
Q Consensus 106 TyV~~~d~---~~~lr~Lv~di~~dLK~~LFnpskPfs~~~g~~~~D-v~LmiDcfVA~FRln 164 (224)
-||+..|+ .=-++.+|..++.-|++++-..+.--..-.+|.+++ .--|.|-++.|...+
T Consensus 21 ~YVP~~~~lp~~CWl~lmV~~l~~SL~~L~~KF~niS~~~sN~siI~~l~~il~dlr~cl~~~ 83 (131)
T d1scfa_ 21 KYVPGMDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKEN 83 (131)
T ss_dssp ECCTTTTTSCGGGTHHHHHHHHHHHHHHHHTTSCSCCSSCCHHHHHHHHHHHHHHHHHHTC--
T ss_pred hcccCCCCCCCceeeehhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHhccC
Confidence 79988773 337899999999999999977666532113666666 577888888877543
No 3
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.14 E-value=2.1e+02 Score=21.96 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=40.6
Q ss_pred chhhHHHHHHHHHHhh-ccCCCCcccccc------ccCCCCChhHHHHHHHHHHHHhhhcCCCCCCCcccCCC-Ccchhh
Q psy14867 146 LNQDMDLMIECFVSGF-RIKPHNNEALKV------CLNPNSPLIYHFVLISSLYKSVIILSPGNQSWFLVTGS-YPRQAW 217 (224)
Q Consensus 146 ~~~Dv~LmiDcfVA~F-RlnP~n~~lfkv------CL~~~SP~~fk~vlVkAl~~I~~~~te~rLpWwP~Id~-Y~~~~~ 217 (224)
+.+.+|-+.++|...| +=||.+-..+.. +.-..++.+.+ ++.=|+..+- |.-+ .|.+.. ....
T Consensus 106 EaQ~IdRile~Fa~~Y~~~N~~~~~~~~~~~~~~~~~~f~s~d~~y-~L~ysiimLn---TdlH---np~vk~kMt~~-- 176 (211)
T d1ku1a_ 106 ESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVF-ILSYSIIMLN---TDLH---NPQVKEHMSFE-- 176 (211)
T ss_dssp SHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHH-HHHHHHHHHH---HHHT---CTTCSSCCCHH--
T ss_pred hHHHHHHHHHHHhHHHHhcCCCCcccccccccccccccccCccHHH-HHHHHHHHHh---hhcc---CCcccCCCCHH--
Confidence 4688999999999887 455544222211 11112233332 5666777666 4433 567766 6554
Q ss_pred hhhhccC
Q psy14867 218 KFILNIR 224 (224)
Q Consensus 218 ~~~~~~~ 224 (224)
.||+|+|
T Consensus 177 ~Fi~n~r 183 (211)
T d1ku1a_ 177 DYSGNLK 183 (211)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 5999876
No 4
>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=8.31 E-value=89 Score=22.13 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=24.9
Q ss_pred hHHHHHhhC-CCCCCCcc-----------hhhhhhhHHHHHHhhCCCC
Q psy14867 2 VLEEIVNAG-SGAPCSPR-----------HDKKRSYIDAVKKFIGPHN 37 (224)
Q Consensus 2 ~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 37 (224)
|.+-|.++| .|+|.++. +-.+-.++|.+.|.|..|+
T Consensus 31 I~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~ 78 (110)
T d1fp1d1 31 LFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYS 78 (110)
T ss_dssp HHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 566777776 46665543 3334568999999999885
No 5
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.67 E-value=3.3e+02 Score=18.46 Aligned_cols=49 Identities=24% Similarity=0.140 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhhhccccceeeeecCCCCChHHHHHHHHHHHHHHHhc
Q psy14867 82 ALVQSVINELKAAVITCVKLCKASTYINNLDSNNVVFALVQSVINELKAQL 132 (224)
Q Consensus 82 ~Lvqs~~~dl~aa~i~~V~LCKAATyV~~~d~~~~lr~Lv~di~~dLK~~L 132 (224)
..|...-+++..++-.+|+=|+.+....+. ..-+..-++.|.+.|-++|
T Consensus 77 ~~L~~aak~V~~a~~~Lv~a~~~a~~~~~~--~~~l~~aa~~v~~~l~~Ll 125 (125)
T d1sj8a2 77 EQLVEAGRLVAKAVEGCVSASQAATEDGQL--LRGVGAAATAVTQALNELL 125 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSSHH--HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcCcHH--HHHHHHHHHHHHHHHHhhC
Confidence 334444466777776777778877653222 2345556677766666654
No 6
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=7.56 E-value=1.1e+02 Score=20.40 Aligned_cols=23 Identities=0% Similarity=-0.003 Sum_probs=20.7
Q ss_pred chhhHHHHHHHHHHhhccCCCCc
Q psy14867 146 LNQDMDLMIECFVSGFRIKPHNN 168 (224)
Q Consensus 146 ~~~Dv~LmiDcfVA~FRlnP~n~ 168 (224)
+..|.+.++|+|+.-|=+.|.++
T Consensus 52 ~~~e~~~Iv~YLa~~yG~~p~e~ 74 (85)
T d1pbya1 52 EPEERAAIVRHLSDTRGLSLAET 74 (85)
T ss_dssp CHHHHHHHHHHHHHHSCCCSGGG
T ss_pred CHHHHHHHHHHHHHHcCCCcccc
Confidence 46899999999999999999876
No 7
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.44 E-value=2.2e+02 Score=23.88 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhccCCCCCCcCCCCcchhhHHHHHHHHHHhhccCCCCc------cccccccCCCCChhHHHHHHHHHHHH
Q psy14867 121 VQSVINELKAQLFTPHKPFSRGANYLNQDMDLMIECFVSGFRIKPHNN------EALKVCLNPNSPLIYHFVLISSLYKS 194 (224)
Q Consensus 121 v~di~~dLK~~LFnpskPfs~~~g~~~~Dv~LmiDcfVA~FRlnP~n~------~lfkvCL~~~SP~~fk~vlVkAl~~I 194 (224)
++.++..|+..|-++ .|+-|. --+.|+..+|+++|+.. +.+..++.... +......+.++..|
T Consensus 116 ~~~l~~~l~~~L~D~-~p~VRk---------~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~n-~~V~~~Al~~L~~I 184 (579)
T d2vglb_ 116 TEYLCEPLRKCLKDE-DPYVRK---------TAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSN-PMVVANAVAALSEI 184 (579)
T ss_dssp HHHHHHHHHHHSSCS-CHHHHH---------HHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cHHHHH---------HHHHHHHHHhccChhhhhhhhHHHHHHHHHcCCC-hHHHHHHHHHHHHH
Confidence 567788888888766 355443 45679999999999763 45666777665 45777778888777
Q ss_pred h
Q psy14867 195 V 195 (224)
Q Consensus 195 ~ 195 (224)
.
T Consensus 185 ~ 185 (579)
T d2vglb_ 185 S 185 (579)
T ss_dssp T
T ss_pred H
Confidence 7
No 8
>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Probab=6.88 E-value=1.2e+02 Score=20.18 Aligned_cols=23 Identities=9% Similarity=0.264 Sum_probs=20.5
Q ss_pred chhhHHHHHHHHHHhhccCCCCc
Q psy14867 146 LNQDMDLMIECFVSGFRIKPHNN 168 (224)
Q Consensus 146 ~~~Dv~LmiDcfVA~FRlnP~n~ 168 (224)
...|.+.++|+|+.-|=+.|.++
T Consensus 52 ~~~e~~~Iv~YLa~~yG~~p~e~ 74 (84)
T d1jmxa1 52 SDDDRRTLVKYLADKQGLAPSET 74 (84)
T ss_dssp CHHHHHHHHHHHHHHTCCCGGGS
T ss_pred CHHHHHHHHHHHHHHcCCCcccc
Confidence 46899999999999999999776
No 9
>d2cwja1 d.79.1.1 (A:4-119) Putative endonuclease APE1501 {Aeropyrum pernix [TaxId: 56636]}
Probab=6.48 E-value=3.2e+02 Score=17.80 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhhhccccceeeeecCCCCChHHHHHHHHHHHHHHHhccCCCCCCc
Q psy14867 84 VQSVINELKAAVITCVKLCKASTYINNLDSNNVVFALVQSVINELKAQLFTPHKPFS 140 (224)
Q Consensus 84 vqs~~~dl~aa~i~~V~LCKAATyV~~~d~~~~lr~Lv~di~~dLK~~LFnpskPfs 140 (224)
++.+.+-|+++-...-+++|.-.|+...+ +. +..+++....|...+|-+
T Consensus 46 ~~ni~~il~~ag~~~~~vvk~~v~~~~~~-~~-------~~~~~~~~~~f~~~~pa~ 94 (116)
T d2cwja1 46 LDNLKAIVEGAGYSMDDIVKVTVYITDIS-RF-------SEFNEVYREYFNRPYPAR 94 (116)
T ss_dssp HHHHHHHHHHTSCCGGGCCEEEEEESSSS-HH-------HHHHHHHHTTCCSSCCEE
T ss_pred HHHHHHHHHHcCCcccccEEEEEEeCchH-HH-------HHHHHHHHHHcCCCCCCE
Confidence 44555666776677899999999998765 22 234677778888777653
No 10
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.75 E-value=62 Score=21.44 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=7.7
Q ss_pred CCCCCCCcccC
Q psy14867 199 SPGNQSWFLVT 209 (224)
Q Consensus 199 te~rLpWwP~I 209 (224)
.-...||||-+
T Consensus 11 K~~g~pwWPa~ 21 (97)
T d2daqa1 11 KLGNYRWWPAE 21 (97)
T ss_dssp ECSSSCEEEEE
T ss_pred EcCCcCCCceE
Confidence 34568999964
Done!