RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14867
(224 letters)
>gnl|CDD|239075 cd02335, ZZ_ADA2, Zinc finger, ZZ type. Zinc finger present in
ADA2, a putative transcriptional adaptor, and related
proteins. The ZZ motif coordinates two zinc ions and
most likely participates in ligand binding or molecular
scaffolding.
Length = 49
Score = 29.6 bits (67), Expect = 0.15
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 148 QDMDLMIECFVSGFRIKPHNNE 169
D DL +ECF +G I H N+
Sbjct: 22 PDFDLCLECFSAGAEIGKHRND 43
>gnl|CDD|199848 cd03866, M14_CPM, Peptidase M14 carboxypeptidase subfamily
N/E-like; Carboxypeptidase M subgroup. Peptidase M14
Carboxypeptidase (CP) M (CPM) belongs to the N/E
subfamily of the M14 family of metallocarboxypeptidases
(MCPs).The M14 family are zinc-binding CPs which
hydrolyze single, C-terminal amino acids from
polypeptide chains, and have a recognition site for the
free C-terminal carboxyl group, which is a key
determinant of specificity. CPM is an extracellular
glycoprotein, bound to cell membranes via a
glycosyl-phosphatidylinositol on the C-terminus of the
protein. It specifically removes C-terminal basic
residues such as lysine and arginine from peptides and
proteins. The highest levels of CPM have been found in
human lung and placenta, but significant amounts are
present in kidney, blood vessels, intestine, brain, and
peripheral nerves. CPM has also been found in soluble
form in various body fluids, including amniotic fluid,
seminal plasma and urine. Due to its wide distribution
in a variety of tissues, it is believed that it plays an
important role in the control of peptide hormones and
growth factor activity on the cell surface and in the
membrane-localized degradation of extracellular
proteins, for example it hydrolyses the C-terminal
arginine of epidermal growth factor (EGF) resulting in
des-Arg-EGF which binds to the EGF receptor (EGFR) with
an equal or greater affinity than native EGF. CPM is a
required processing enzyme that generates specific
agonists for the B1 receptor.
Length = 292
Score = 31.0 bits (70), Expect = 0.36
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 166 HNNEALKVCL---NPNSPLIYHFVLISSLYKSVIILSPGNQSWFLVTGSYPRQ 215
HN ++ L N N I H + S+ +SV G + W LV G +PR+
Sbjct: 6 HNTVQMEQYLKDVNKNYSSITH---LHSIGQSV----EGRELWVLVLGQHPRE 51
>gnl|CDD|226792 COG4342, COG4342, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 291
Score = 31.0 bits (70), Expect = 0.37
Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 26/144 (18%)
Query: 22 KRSYIDAVKKFIGPHNSSDK------PLINFVS--GWYLEMTAAVI-TCVKLCKAS---T 69
R Y+ A+ + IG DK I F++ G E A + +K+ K++
Sbjct: 60 ARDYLSALNRPIGSVREKDKYQKAYRLFIKFLTSRGIISEEFAEKLRKPLKVKKSNGVDL 119
Query: 70 YINNLDSNNVVFALVQ----SVINELKAAVITCVKLCKASTYINNLDSNNVVFALVQSVI 125
YI + + L + + + +L +A + NLD + + V+
Sbjct: 120 YIPSDEEIRATEELAREYSERAYLVYLLLLFSGARLSEAVAVLRNLDHSRLY-----CVV 174
Query: 126 NELKAQLFTPHKPFSRG---ANYL 146
N + +SRG A Y+
Sbjct: 175 NGK--VICYYPLSWSRGHKRAFYI 196
>gnl|CDD|241358 cd13204, FERM_C2_myosin_like, Myosin-like FERM domain C-lobe,
repeat 2. These myosin-like proteins are unidentified
though they are sequence similar to myosin 1/myo1,
myosin 7/myoVII, and myosin 10/myoX. These myosin-like
proteins contain an N-terminal motor/head region and a
C-terminal tail consisting of two myosin tail homology 4
(MyTH4) and twos FERM domains. In myoX the FERM domain
forms a supramodule with its MyTH4 domain which binds to
the negatively charged E-hook region in the tails of
alpha- and beta-tubulin forming a proposed motorized
link between actin filaments and microtubules and a
similar thing might happen in these myosins. The FERM
domain has a cloverleaf tripart structure (FERM_N,
FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe,
C-lobe/F1, F2, F3). The second FERM_N repeat is present
in this hierarchy. The C-lobe/F3 within the FERM domain
is part of the PH domain family. The FERM domain is
found in the cytoskeletal-associated proteins such as
ezrin, moesin, radixin, 4.1R, and merlin. These proteins
provide a link between the membrane and cytoskeleton and
are involved in signal transduction pathways. The FERM
domain is also found in protein tyrosine phosphatases
(PTPs) , the tyrosine kinases FAK and JAK, in addition
to other proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 113
Score = 29.7 bits (67), Expect = 0.49
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 186 VLISSLYKSVIILSPGNQSWFLVTGSYPRQAWKFILN 222
LIS Y S++ SP S +VTGS R KFI N
Sbjct: 58 PLISYSYSSIVSYSPSLNSLMIVTGSLTRGT-KFIFN 93
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.410
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,992,072
Number of extensions: 982671
Number of successful extensions: 725
Number of sequences better than 10.0: 1
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 7
Length of query: 224
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 131
Effective length of database: 6,812,680
Effective search space: 892461080
Effective search space used: 892461080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)