RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14867
         (224 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.2 bits (83), Expect = 0.007
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 25/97 (25%)

Query: 1   KVLEEIVNAGSGAPCSP-------RHDKKRSYIDAVKK--------FIGPHNSSDKPLIN 45
            +LE+ +    G P SP         ++ + Y++             I   N +     N
Sbjct: 322 SILEDSLENNEGVP-SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK----N 376

Query: 46  FV-SGWYLEMTAAVITCVKLCKASTYINNLDSNNVVF 81
            V SG    +    +T  K  KA +    LD + + F
Sbjct: 377 LVVSGPPQSLYGLNLTLRKA-KAPS---GLDQSRIPF 409



 Score = 33.5 bits (76), Expect = 0.058
 Identities = 38/241 (15%), Positives = 76/241 (31%), Gaps = 86/241 (35%)

Query: 19  HDKKRSYIDAVKKFIGPHNSSDKPLINFVS--------GWYLEMTAAVITCVKLCKASTY 70
            D+  +  + V KF+G           +VS        G + ++    +T  +    + Y
Sbjct: 51  DDEPTTPAELVGKFLG-----------YVSSLVEPSKVGQFDQVLNLCLTEFE----NCY 95

Query: 71  INNLDSNNVVFALVQSVINELKAAVITCVKLCKA-----------------STYINNLDS 113
              L+ N++  AL   ++ E    ++   +L K                  S     +  
Sbjct: 96  ---LEGNDI-HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151

Query: 114 NNVVFALV---QSVIN----ELKAQLFTPHKPF-----SRGANYLN-------------- 147
            N     +   Q   +    EL+  L+  +           A  L+              
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELR-DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210

Query: 148 QDMDLMIECFVSGFRIKPHNNEALKVCLNPNS-PLIY-----HFVLISSLYKSVIILSPG 201
           Q ++++   ++      P + + L     P S PLI      H+V+ + L       +PG
Sbjct: 211 QGLNIL--EWLENPSNTP-DKDYLLSI--PISCPLIGVIQLAHYVVTAKLLG----FTPG 261

Query: 202 N 202
            
Sbjct: 262 E 262



 Score = 29.6 bits (66), Expect = 1.1
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 30/94 (31%)

Query: 52   LEMTAAVITCVKLCKASTYI----N-NLDSNNVVFA-------LVQSVINELKAAVITCV 99
                A      ++ K + ++    N N+++   V A        V +V+N +K   I  +
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880

Query: 100  KLCKASTYINNLDSNNVVFALVQSVINELKAQLF 133
            +L                       + E++  LF
Sbjct: 1881 EL------------------QKSLSLEEVEGHLF 1896


>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding
           protein, lyase; HET: KCX ALY; 1.55A {Thermus
           thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
          Length = 301

 Score = 26.8 bits (58), Expect = 6.4
 Identities = 5/24 (20%), Positives = 10/24 (41%)

Query: 133 FTPHKPFSRGANYLNQDMDLMIEC 156
               + + R  + L    D+M+E 
Sbjct: 268 RVTREDWERLLSALPGPADVMVEA 291


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0764    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,264,903
Number of extensions: 174954
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 6
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)