RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14867
         (224 letters)



>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 230

 Score = 25.8 bits (55), Expect = 4.8
 Identities = 5/41 (12%), Positives = 12/41 (29%)

Query: 11 SGAPCSPRHDKKRSYIDAVKKFIGPHNSSDKPLINFVSGWY 51
           G       ++K  ++    + I      + P +    G  
Sbjct: 55 LGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQ 95


>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 374

 Score = 24.9 bits (54), Expect = 8.4
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 101 LCKASTYINNLDSNNVVFALVQSVINELKAQLFTPHKPFSRGANYLNQDMDLMIECFVSG 160
           L K   Y+      ++V   +++ ++ + +QL    K F+    + N     + + F S 
Sbjct: 229 LWKIQPYLPEFSFCDLVNKEIKNKMDNVISQL--DTKIFNEDLVFANDLSLTLKDEFRSR 286

Query: 161 FR 162
           F+
Sbjct: 287 FK 288


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 806,573
Number of extensions: 34376
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 6
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)