BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14868
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
K + I +DYTSGA+LTGELKK LI+ + P++ HQ K VT+E
Sbjct: 412 KLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 455
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
K + I +DYTSGA+LTGELKK LI+ + P++ HQ K VT+E
Sbjct: 319 KLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 362
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
K + I +DYTSGA+LTGELKK LI+ + P++ HQ K VT+E
Sbjct: 319 KLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 362
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
K + I +DYTSGA+LTGELKK LI+ + P++ HQ K VT+E
Sbjct: 331 KLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 374
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
K + I +DYTSGA+LTGELKK LI+ + P++ HQ K VT+E
Sbjct: 319 KLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 362
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
K + I +DYTSGA LTGELKK LI+ + P++ HQ K VT+E
Sbjct: 412 KLEQIRKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDE 455
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
K + I +DYTSGA LTGELKK LI+ + P++ HQ K VT+E
Sbjct: 412 KLEQIRKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDE 455
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
K + I +DYTSGA LTGELKK LI+ + P++ HQ K VT+E
Sbjct: 365 KLEQIRKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDE 408
>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
pdb|3I05|B Chain B, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
Length = 395
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSS 139
+ ++Y G ++TGE+KK+LI+TIT I HQE K VT+E +L +S+
Sbjct: 336 VKKEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTST 383
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet
pdb|3KT3|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT6|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT8|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
Length = 438
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 96 YTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
Y SG LL+GE+KK+ I+T+ V QE V EE
Sbjct: 366 YKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEE 401
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl
Trna Synthetase
Length = 432
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 96 YTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
Y SG LL+GE+KK+ I+T+ V QE V EE
Sbjct: 366 YKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEE 401
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 87 RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH-GKLTSSS 139
K + I + Y+SG +L+GE+K IL+ + + +HQ+ + + ++ K T+ S
Sbjct: 328 EKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKS 381
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 95 DYTSGALLTGELKKILIDTITPIVTHHQE 123
DY +G LLTGE+K LI + ++ H E
Sbjct: 403 DYKTGKLLTGEVKATLIGILQGLIKEHAE 431
>pdb|4HD5|A Chain A, Crystal Structure Of Bc0361, A Polysaccharide Deacetylase
From Bacillus Cereus
Length = 360
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 26/101 (25%)
Query: 98 SGALLTGELKKILIDTIT------------PIVTHHQEAMKGVTEEHGKLTSSSSGRP-- 143
GAL T E+K+++ I P +T+++E +KG E+ K+T G+P
Sbjct: 242 EGALSTSEIKEMVDSGIFSVQSHTATHADLPKITNYEEELKGSKEKLEKIT----GKPVI 297
Query: 144 -----DRYTDQIYLTST--HYQVDLTGRPDQVYLSSGLPDS 177
+ D +T T +YQ T +P Q +++ G PD
Sbjct: 298 AIAYXFGHVDDKVVTETKKYYQFATTTKPGQ-FITKGEPDE 337
>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|B Chain B, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|C Chain C, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|D Chain D, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|E Chain E, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|F Chain F, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
Length = 386
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 94 QDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGK 134
+ Y+ G LL+GELKKI+ ++ + + K +T + K
Sbjct: 338 EKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLK 378
>pdb|2X2N|A Chain A, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|B Chain B, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|C Chain C, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|D Chain D, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
Length = 475
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 73 RPDLRAYITSKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH 132
R +L+ ++ I ARKA + +D ++ LL+G L + D TP+ H M
Sbjct: 219 RTELQKILSEIIIARKAAAVNKDSSTSDLLSGLLSAVYRDG-TPMSLHEVCGMIVAAMFA 277
Query: 133 GKLTSS 138
G+ TSS
Sbjct: 278 GQHTSS 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,050,735
Number of Sequences: 62578
Number of extensions: 237781
Number of successful extensions: 539
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 16
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)