BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14868
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1
SV=2
Length = 481
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
I +DYTSGA+LTGELKK LID + P++ HQ K VTEE
Sbjct: 420 IRKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEE 459
>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars
PE=1 SV=2
Length = 481
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
I +DYTSGA+LTGELKK LID + P++ HQ K VTEE
Sbjct: 420 IRKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEE 459
>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus
GN=WARS PE=2 SV=3
Length = 475
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
K + I +DY+SGA+LTGELKK LID + P+V HQ K VT+E
Sbjct: 416 KLEQIRKDYSSGAMLTGELKKELIDVLQPLVAEHQARRKEVTDE 459
>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2
SV=2
Length = 472
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
K + I +DYTSGA+LTGELKK LI+ + P++ HQ K VT+E
Sbjct: 413 KLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 456
>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1
SV=2
Length = 471
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
K + I +DYTSGA+LTGELKK LI+ + P++ HQ K VT+E
Sbjct: 412 KLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 455
>sp|P17248|SYWC_BOVIN Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus GN=WARS PE=1
SV=3
Length = 476
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
K + I +DYTSGA+LTGELKK LI+ + P++ HQ K VT+E
Sbjct: 417 KLEQIRRDYTSGAMLTGELKKELIEVLQPLIAEHQARRKEVTDE 460
>sp|Q55DZ8|SYWC_DICDI Tryptophan--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=trpS PE=3 SV=1
Length = 400
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
I Y++G ++TGE+K+ILID + I+ H+EA +T+E
Sbjct: 348 IAHRYSTGKMMTGEIKQILIDLMNKIIIRHKEARAKITDE 387
>sp|Q4JBG7|SYW_SULAC Tryptophan--tRNA ligase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=trpS PE=3 SV=1
Length = 381
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQE 123
I +DY SGA+LTGELK+IL+D + + H+E
Sbjct: 322 IEEDYRSGAMLTGELKQILVDKLNAFLEEHRE 353
>sp|Q976M1|SYW_SULTO Tryptophan--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=trpS PE=3 SV=2
Length = 381
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTS 137
I +DY SGALLTGELK+ILI+ + + H++ EE KL +
Sbjct: 322 IEEDYRSGALLTGELKQILIEKLNDFLEEHRQK----REEAKKLVN 363
>sp|E7KIY3|SPC29_YEASA Spindle pole component 29 OS=Saccharomyces cerevisiae (strain
AWRI796) GN=SPC29 PE=3 SV=1
Length = 255
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 107 KKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPD 166
KK DT+ + H+EA+K + EE+ +S G Y Q ++S +++ TG+ D
Sbjct: 12 KKFQDDTLNRVRKEHEEALKKLREENFSSNTSELGNKKHYRAQERMSSPLHRLSPTGKSD 71
Query: 167 QVYLSSGLPD 176
+ S L D
Sbjct: 72 DRKVKSPLDD 81
>sp|E7QLB7|SPC29_YEASZ Spindle pole component 29 OS=Saccharomyces cerevisiae (strain
Zymaflore VL3) GN=SPC29 PE=3 SV=1
Length = 253
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 107 KKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPD 166
KK DT+ + H+EA+K + EE+ +S G Y Q ++S +++ TG+ D
Sbjct: 12 KKFQDDTLNRVRKEHEEALKKLREENFSSNTSELGNKKHYRAQERMSSPLHRLSPTGKSD 71
Query: 167 QVYLSSGLPD 176
+ S L D
Sbjct: 72 DRKVKSPLDD 81
>sp|E7M1C7|SPC29_YEASV Spindle pole component 29 OS=Saccharomyces cerevisiae (strain VIN
13) GN=SPC29 PE=3 SV=1
Length = 253
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 107 KKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPD 166
KK DT+ + H+EA+K + EE+ +S G Y Q ++S +++ TG+ D
Sbjct: 12 KKFQDDTLNRVRKEHEEALKKLREENFSSNTSELGNKKHYRAQERMSSPLHRLSPTGKSD 71
Query: 167 QVYLSSGLPD 176
+ S L D
Sbjct: 72 DRKVKSPLDD 81
>sp|P33419|SPC29_YEAST Spindle pole component 29 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SPC29 PE=1 SV=1
Length = 253
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 107 KKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPD 166
KK DT+ + H+EA+K + EE+ +S G Y Q ++S +++ TG+ D
Sbjct: 12 KKFQDDTLNRVRKEHEEALKKLREENFSSNTSELGNKKHYRAQERMSSPLHRLSPTGKSD 71
Query: 167 QVYLSSGLPD 176
+ S L D
Sbjct: 72 DRKVKSPLDD 81
>sp|E7KVI3|SPC29_YEASL Spindle pole component 29 OS=Saccharomyces cerevisiae (strain
Lalvin QA23) GN=SPC29 PE=3 SV=1
Length = 253
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 107 KKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPD 166
KK DT+ + H+EA+K + EE+ +S G Y Q ++S +++ TG+ D
Sbjct: 12 KKFQDDTLNRVRKEHEEALKKLREENFSSNTSELGNKKHYRAQERMSSPLHRLSPTGKSD 71
Query: 167 QVYLSSGLPD 176
+ S L D
Sbjct: 72 DRKVKSPLDD 81
>sp|C8ZIQ5|SPC29_YEAS8 Spindle pole component 29 OS=Saccharomyces cerevisiae (strain
Lalvin EC1118 / Prise de mousse) GN=SPC29 PE=3 SV=1
Length = 253
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 107 KKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPD 166
KK DT+ + H+EA+K + EE+ +S G Y Q ++S +++ TG+ D
Sbjct: 12 KKFQDDTLNRVRKEHEEALKKLREENFSSNTSELGNKKHYRAQERMSSPLHRLSPTGKSD 71
Query: 167 QVYLSSGLPD 176
+ S L D
Sbjct: 72 DRKVKSPLDD 81
>sp|B5VT41|SPC29_YEAS6 Spindle pole component 29 OS=Saccharomyces cerevisiae (strain
AWRI1631) GN=SPC29 PE=3 SV=1
Length = 253
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 107 KKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPD 166
KK DT+ + H+EA+K + EE+ +S G Y Q ++S +++ TG+ D
Sbjct: 12 KKFQDDTLNRVRKEHEEALKKLREENFSSNTSELGNKKHYRAQERMSSPLHRLSPTGKSD 71
Query: 167 QVYLSSGLPD 176
+ S L D
Sbjct: 72 DRKVKSPLDD 81
>sp|C7GJ78|SPC29_YEAS2 Spindle pole component 29 OS=Saccharomyces cerevisiae (strain
JAY291) GN=SPC29 PE=3 SV=1
Length = 253
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 107 KKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPD 166
KK DT+ + H+EA+K + EE+ +S G Y Q ++S +++ TG+ D
Sbjct: 12 KKFQDDTLNRVRKEHEEALKKLREENFSSNTSELGNKKHYRAQERMSSPLHRLSPTGKSD 71
Query: 167 QVYLSSGLPD 176
+ S L D
Sbjct: 72 DRKVKSPLDD 81
>sp|B3LKV0|SPC29_YEAS1 Spindle pole component 29 OS=Saccharomyces cerevisiae (strain
RM11-1a) GN=SPC29 PE=3 SV=1
Length = 253
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 107 KKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPD 166
KK DT+ + H+EA+K + EE+ +S G Y Q ++S +++ TG+ D
Sbjct: 12 KKFQDDTLNRVRKEHEEALKKLREENFSSNTSELGNKKHYRAQERMSSPLHRLSPTGKSD 71
Query: 167 QVYLSSGLPD 176
+ S L D
Sbjct: 72 DRKVKSPLDD 81
>sp|Q12109|SYWC_YEAST Tryptophan--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=WRS1 PE=1 SV=1
Length = 432
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 96 YTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
Y SG LL+GE+KK+ I+T+ V QE V EE
Sbjct: 366 YKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEE 401
>sp|E7QAA9|SPC29_YEASB Spindle pole component 29 OS=Saccharomyces cerevisiae (strain
FostersB) GN=SPC29 PE=3 SV=1
Length = 253
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 107 KKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPD 166
KK DT+ + H+EA+K + EE+ +S G Y Q ++S +++ G+ D
Sbjct: 12 KKFQDDTLNRVRKEHEEALKKLREENFSSNTSELGNKKHYRAQERMSSPLHRLSPAGKSD 71
Query: 167 QVYLSSGLPD 176
+ S L D
Sbjct: 72 DRKVKSPLDD 81
>sp|A6ZWC8|SPC29_YEAS7 Spindle pole component 29 OS=Saccharomyces cerevisiae (strain
YJM789) GN=SPC29 PE=3 SV=1
Length = 253
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 107 KKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPD 166
KK DT+ + H+EA+K + EE+ +S G Y Q ++S +++ G+ D
Sbjct: 12 KKFQDDTLNRVRKEHEEALKKLREENFSSNTSELGNKKHYRAQERMSSPLHRLSPAGKSD 71
Query: 167 QVYLSSGLPD 176
+ S L D
Sbjct: 72 DRKVKSPLDD 81
>sp|Q6BNP6|HSE1_DEBHA Class E vacuolar protein-sorting machinery protein HSE1
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=HSE1 PE=3 SV=2
Length = 512
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 75 DLRAYITSKITARKADIII------QDYTSGALLTGELKKILIDTITPIVTHHQEAMKGV 128
DL +Y +++ RK DII +D+ G+L+ G+ ++ +TP+VT + +
Sbjct: 265 DLISYEPDELSFRKGDIITVIESVYRDWWRGSLVNGKTGIFPLNYVTPVVTKTPQELSRE 324
Query: 129 TEEHGKLTSSSSGRPDR 145
+E +L + S R D+
Sbjct: 325 LDEENRLLAVDSKRIDK 341
>sp|Q9HN66|SYW2_HALSA Tryptophan--tRNA ligase 2 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS2 PE=3 SV=1
Length = 380
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQE---AMKGVTE 130
I ++Y +G LL+GELK + D IT + HQ A+ VTE
Sbjct: 316 IEREYRAGDLLSGELKDLAADRITEFLAAHQRRRAALGDVTE 357
>sp|A3MX72|SYW_PYRCJ Tryptophan--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=trpS PE=3 SV=1
Length = 374
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 98 SGALLTGELKKILIDTITPIVTHHQEA 124
SGALL GE K++L + I V HQEA
Sbjct: 330 SGALLCGECKQMLYEKIRKFVKQHQEA 356
>sp|Q97ZX0|SYW_SULSO Tryptophan--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=trpS PE=3 SV=2
Length = 380
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 92 IIQDYTSGALLTGELKKILIDTIT 115
I ++Y SG +LTGELK+ILID +
Sbjct: 321 IEEEYRSGKMLTGELKQILIDKLN 344
>sp|O92531|POLG_HCVVO Genome polyprotein OS=Hepatitis C virus genotype 6k (isolate VN405)
PE=1 SV=3
Length = 3016
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 51 GQDDLYAVGTKASDQPLSGRPRRPDLRAYITSKITARKADIIIQDYT---SGALLT---G 104
G+D G+ +S PL G P PDL + S ++ ++ + +GAL+T
Sbjct: 2382 GEDTPSEAGSYSSMPPLEGEPGDPDLSSGSWSTVSEEGDSVVCCSMSYSWTGALVTPCAA 2441
Query: 105 ELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYT-DQIYLTSTHYQ 158
E +K+ I+ ++ + H + T T S++ R + T D++ + HY
Sbjct: 2442 EEEKLPINPLSNSLIRHHNLVYSTT------TRSAAMRQKKVTFDRLQILDQHYN 2490
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,674,263
Number of Sequences: 539616
Number of extensions: 3030886
Number of successful extensions: 7369
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7345
Number of HSP's gapped (non-prelim): 30
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)