Query psy14868
Match_columns 209
No_of_seqs 128 out of 495
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 22:51:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02486 aminoacyl-tRNA ligase 100.0 5.3E-31 1.1E-35 243.2 12.3 123 20-143 243-383 (383)
2 KOG2145|consensus 100.0 4.1E-31 8.8E-36 239.6 10.2 123 20-143 256-396 (397)
3 COG0180 TrpS Tryptophanyl-tRNA 100.0 3.5E-29 7.7E-34 226.6 9.8 120 21-142 178-313 (314)
4 PRK12285 tryptophanyl-tRNA syn 100.0 6.8E-29 1.5E-33 227.9 10.4 118 22-142 233-367 (368)
5 PRK12283 tryptophanyl-tRNA syn 99.9 2.7E-26 5.9E-31 213.3 7.9 122 21-145 243-380 (398)
6 TIGR00233 trpS tryptophanyl-tR 99.9 4.1E-25 9E-30 199.5 9.0 115 31-146 185-313 (328)
7 PRK00927 tryptophanyl-tRNA syn 99.9 1.6E-24 3.5E-29 195.7 8.3 115 29-146 182-315 (333)
8 PRK12282 tryptophanyl-tRNA syn 99.9 1.7E-24 3.7E-29 196.2 7.5 116 28-146 185-314 (333)
9 PRK12556 tryptophanyl-tRNA syn 99.9 2E-24 4.4E-29 195.8 7.3 116 28-146 192-316 (332)
10 PRK12284 tryptophanyl-tRNA syn 99.9 7.4E-24 1.6E-28 198.8 7.8 115 28-146 192-316 (431)
11 PRK08560 tyrosyl-tRNA syntheta 99.9 7.7E-22 1.7E-26 177.9 8.8 101 28-130 202-325 (329)
12 PLN02886 aminoacyl-tRNA ligase 99.8 1.9E-21 4.1E-26 180.6 8.4 113 29-146 240-369 (389)
13 cd00806 TrpRS_core catalytic c 99.8 1.1E-19 2.3E-24 160.9 8.5 94 22-117 171-280 (280)
14 PTZ00126 tyrosyl-tRNA syntheta 99.8 5.1E-19 1.1E-23 163.7 9.2 99 28-128 245-366 (383)
15 PTZ00348 tyrosyl-tRNA syntheta 99.7 3.9E-18 8.5E-23 167.6 9.3 100 28-129 210-341 (682)
16 PF00579 tRNA-synt_1b: tRNA sy 99.6 9.9E-16 2.1E-20 134.3 5.0 96 22-119 179-292 (292)
17 cd00805 TyrRS_core catalytic c 99.6 4.3E-15 9.3E-20 130.6 6.7 80 29-116 186-268 (269)
18 cd00395 Tyr_Trp_RS_core cataly 99.4 3E-13 6.5E-18 119.7 7.2 81 29-117 189-273 (273)
19 KOG2144|consensus 99.4 8.2E-13 1.8E-17 120.5 8.7 98 31-130 214-336 (360)
20 PRK05912 tyrosyl-tRNA syntheta 99.4 8.5E-13 1.8E-17 122.9 7.6 93 29-130 223-320 (408)
21 PRK13354 tyrosyl-tRNA syntheta 99.3 2.9E-12 6.2E-17 119.7 8.2 94 28-130 220-318 (410)
22 KOG2713|consensus 99.1 1.2E-10 2.6E-15 106.2 4.8 105 37-146 210-329 (347)
23 PTZ00348 tyrosyl-tRNA syntheta 98.7 4.6E-08 9.9E-13 97.2 9.6 110 14-126 525-661 (682)
24 TIGR00234 tyrS tyrosyl-tRNA sy 96.9 0.0018 3.9E-08 60.3 6.0 72 29-119 212-293 (377)
25 COG0162 TyrS Tyrosyl-tRNA synt 95.7 0.013 2.9E-07 55.6 4.5 78 29-119 215-301 (401)
26 PF02037 SAP: SAP domain; Int 48.1 14 0.0003 23.4 1.7 31 88-118 5-35 (35)
27 PRK01271 4-oxalocrotonate taut 37.6 12 0.00027 27.8 0.3 61 102-173 13-73 (76)
28 PRK00750 lysK lysyl-tRNA synth 37.4 16 0.00034 35.7 1.0 30 22-52 264-293 (510)
29 PRK07217 replication factor A; 35.6 1.6E+02 0.0034 27.7 7.2 83 87-169 6-95 (311)
30 KOG2967|consensus 33.9 36 0.00078 31.9 2.8 40 151-190 164-211 (314)
31 PF04275 P-mevalo_kinase: Phos 32.9 38 0.00083 27.5 2.4 49 98-148 2-61 (116)
32 PF08557 Lipid_DES: Sphingolip 30.9 27 0.00058 23.4 1.0 23 119-141 13-37 (39)
33 PRK04308 murD UDP-N-acetylmura 30.0 28 0.00061 32.3 1.4 59 149-207 52-119 (445)
34 smart00513 SAP Putative DNA-bi 29.5 41 0.0009 20.9 1.7 30 89-118 6-35 (35)
35 PRK13610 photosystem II reacti 28.8 45 0.00098 27.2 2.2 39 21-60 3-49 (113)
36 TIGR02374 nitri_red_nirB nitri 27.0 78 0.0017 32.3 4.0 31 88-119 434-464 (785)
37 cd00674 LysRS_core_class_I cat 26.4 29 0.00063 32.6 0.8 29 23-53 260-289 (353)
38 KOG2146|consensus 26.1 36 0.00078 32.2 1.4 57 105-166 36-92 (354)
39 cd00818 IleRS_core catalytic c 25.7 40 0.00086 30.8 1.6 25 25-50 286-310 (338)
40 TIGR02933 nifM_nitrog nitrogen 25.5 2E+02 0.0042 25.2 5.8 77 83-161 51-133 (256)
41 cd00808 GluRS_core catalytic c 24.8 29 0.00064 30.9 0.5 57 4-64 129-191 (239)
42 PRK14895 gltX glutamyl-tRNA sy 24.5 23 0.00049 35.1 -0.3 95 2-98 205-315 (513)
43 TIGR02000 NifU_proper Fe-S clu 24.5 84 0.0018 28.7 3.4 33 88-121 158-190 (290)
44 cd00812 LeuRS_core catalytic c 24.2 26 0.00056 31.6 0.0 24 27-52 265-288 (314)
45 PRK10509 bacterioferritin-asso 24.2 1.2E+02 0.0025 21.8 3.4 32 89-121 26-57 (64)
46 cd00817 ValRS_core catalytic c 23.0 51 0.0011 30.6 1.7 27 24-51 329-355 (382)
47 PF10180 DUF2373: Uncharacteri 22.4 14 0.00031 26.8 -1.6 33 5-37 17-52 (65)
48 COG1202 Superfamily II helicas 21.9 31 0.00067 35.7 0.1 58 1-81 737-794 (830)
No 1
>PLN02486 aminoacyl-tRNA ligase
Probab=99.97 E-value=5.3e-31 Score=243.24 Aligned_cols=123 Identities=25% Similarity=0.286 Sum_probs=111.5
Q ss_pred hhcCcccee--eeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCCC-------------CCCccchhhhhcc
Q psy14868 20 TILRKVAVV--QVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLSG-------------RPRRPDLRAYITS 82 (209)
Q Consensus 20 ~~~~~~~~~--~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pG-------------gpeTcdVF~YlkF 82 (209)
-|.++|+.+ +|++||+| +|||+|+|+|+|||+|+ |++|++||++||+|| +|++|++|+|++|
T Consensus 243 ~~~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D~-p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~ 321 (383)
T PLN02486 243 LGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDT-PKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNF 321 (383)
T ss_pred hCCCCcceeccccccCCCCCCCcCcCcCCCCeeeccCC-HHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHH
Confidence 355678776 79999999 79999999999999997 999999999988764 4555777999994
Q ss_pred -cCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCcc
Q psy14868 83 -KITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRP 143 (209)
Q Consensus 83 -~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~ 143 (209)
.+||+++++|+++|++|+|+|||||+.|++.|+++|++|||||++++++.|++||.+++++
T Consensus 322 f~~dd~~~eei~~~y~~G~l~~ge~K~~lae~i~~~l~~~qerr~~~~~~~~~~~~~~~~~~ 383 (383)
T PLN02486 322 FLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP 383 (383)
T ss_pred HcCCchHHHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 7677899999999999999999999999999999999999999999999999999999864
No 2
>KOG2145|consensus
Probab=99.97 E-value=4.1e-31 Score=239.64 Aligned_cols=123 Identities=28% Similarity=0.324 Sum_probs=115.0
Q ss_pred hhcCccce--eeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCCCCCCc------------cch-hhhhcc
Q psy14868 20 TILRKVAV--VQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRR------------PDL-RAYITS 82 (209)
Q Consensus 20 ~~~~~~~~--~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGgpeT------------cdV-F~YlkF 82 (209)
--.+|||. +.|.+.|+| +|||||+|+|+|||+|+ +++|++||+++|||||++| +|| |+|++|
T Consensus 256 lg~~Kpali~stffpaLqG~~~KMSASdpns~Ifltdt-~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsF 334 (397)
T KOG2145|consen 256 LGYPKPALIHSTFFPALQGAQTKMSASDPNSAIFLTDT-AKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSF 334 (397)
T ss_pred hCCCCcceeehhhchhhhCcccccccCCCCceEEecCc-HHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHH
Confidence 34678886 589999998 59999999999999999 9999999999999999998 677 999995
Q ss_pred -cCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCcc
Q psy14868 83 -KITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRP 143 (209)
Q Consensus 83 -~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~ 143 (209)
.+||++||+++.+|.+|+|++||+||+|+++|++++++||++|++++|+.|++||.+++++
T Consensus 335 FldDD~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk~Vtde~ld~Fm~~r~l~ 396 (397)
T KOG2145|consen 335 FLDDDDKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFVSRHQAARKEVTDETLDAFMDPRKLS 396 (397)
T ss_pred HhccHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCcccCC
Confidence 8899999999999999999999999999999999999999999999999999999998764
No 3
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.5e-29 Score=226.63 Aligned_cols=120 Identities=20% Similarity=0.162 Sum_probs=104.0
Q ss_pred hcCccceee--eecccCC-CCCCCCCCCCeEEccCCChHHHHHHhhcCCC----------CCCCCccchhhhhc-ccCCH
Q psy14868 21 ILRKVAVVQ--VIRILLH-SKSNTTDLIISLFLGQDDLYAVGTKASDQPL----------SGRPRRPDLRAYIT-SKITA 86 (209)
Q Consensus 21 ~~~~~~~~~--~~~gL~g-gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~----------pGgpeTcdVF~Ylk-F~eDD 86 (209)
.+|++-.-| +|+||+| +|||+|+|+|+|||+|+ |++|+|||++|+. +|.|+.|+||+||. |.+++
T Consensus 178 ~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D~-~~~i~kKI~~~~td~~~~~~~~~~g~Pe~~~l~~~~~~~~~~~ 256 (314)
T COG0180 178 PLPEALISKVARLPGLDGPGKMSKSDPNSAIFLLDD-PKTIRKKIKKAATDGPTLIEYRKGGKPEVCNLFEIYSAFFEDD 256 (314)
T ss_pred CCccccccCCCcccCCCCCCcccccCCCCeeeccCC-HHHHHHHHHHhccCCCCccccCCCCCCCcchHHHHHHHhcCCC
Confidence 456666778 9999999 89999999999999997 9999999999733 46799999999999 55444
Q ss_pred HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCc
Q psy14868 87 RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGR 142 (209)
Q Consensus 87 eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l 142 (209)
+.++|+++|++|+++|||||+.|++.|+++|+||||||+++.++. +++++..|..
T Consensus 257 -~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~l~~il~~g~~ 313 (314)
T COG0180 257 -SILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAYLDDILRKGAE 313 (314)
T ss_pred -cHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhccCC
Confidence 445999999999999999999999999999999999999998866 6666665543
No 4
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=6.8e-29 Score=227.91 Aligned_cols=118 Identities=20% Similarity=0.203 Sum_probs=106.2
Q ss_pred cCcccee--eeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCCC-------------CCCccchhhhhc-cc-C
Q psy14868 22 LRKVAVV--QVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSG-------------RPRRPDLRAYIT-SK-I 84 (209)
Q Consensus 22 ~~~~~~~--~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pG-------------gpeTcdVF~Ylk-F~-e 84 (209)
+++|+.+ +|++||+|+|||+|+|+|+|||+|+ |++|++||++ |+|| +|+.|+||+|++ |. +
T Consensus 233 f~~P~~l~~~~lpgL~G~KMSkS~~~s~I~L~D~-p~~I~kKI~k-A~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~ 310 (368)
T PRK12285 233 FIKPSSTYHKFMPGLTGGKMSSSKPESAIYLTDD-PETVKKKIMK-ALTGGRATLEEQRKLGGEPDECVVYELLLYHLEE 310 (368)
T ss_pred CCCchhHhhhcccCCCCCcCCCCCCCCeeeccCC-HHHHHHHHHh-CcCCCCcccccccccCCCCCcchHHHHHHHHhcC
Confidence 5666654 7999999999999999999999997 9999999999 7765 355688899999 44 6
Q ss_pred CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCc
Q psy14868 85 TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGR 142 (209)
Q Consensus 85 DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l 142 (209)
||+++++|+++|++|+++|||||+.|++.|+++|+||||||+++++ .|++|+...++
T Consensus 311 ~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~~~-~~~~~~~~~~~ 367 (368)
T PRK12285 311 DDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEARE-ILEKYLYDGKL 367 (368)
T ss_pred CCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccC
Confidence 7889999999999999999999999999999999999999999998 89999987654
No 5
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=2.7e-26 Score=213.33 Aligned_cols=122 Identities=15% Similarity=0.073 Sum_probs=108.8
Q ss_pred hcCccce----eeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCC----------CCCCCccchhhhhcccCCH
Q psy14868 21 ILRKVAV----VQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPL----------SGRPRRPDLRAYITSKITA 86 (209)
Q Consensus 21 ~~~~~~~----~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~----------pGgpeTcdVF~YlkF~eDD 86 (209)
+++.|.. .++++||+|+|||+|+ .++|+|+|+ |++|++||+++ + +|.|++|+||+||.+..|+
T Consensus 243 ~~~~P~~~~~~~~~I~gLdg~KMSKS~-~n~I~L~Ds-~~~I~kKI~~a-~TDs~~~~~~~~g~Pe~~nl~~i~~~~~~~ 319 (398)
T PRK12283 243 ILPEPQALLTEASKMPGLDGQKMSKSY-GNTIGLRED-PESVTKKIRTM-PTDPARVRRTDPGDPEKCPVWQLHQVYSDE 319 (398)
T ss_pred ccCCCcccccCCCcccCCCCCcCCCCC-CCeeeCcCC-HHHHHHHHHhC-CCCCcccccCCCCCCCcCHHHHHHHHhCCC
Confidence 3566654 6899999999999995 579999997 99999999995 3 5889999999999965677
Q ss_pred HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCcccc
Q psy14868 87 RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDR 145 (209)
Q Consensus 87 eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~ 145 (209)
+++++++++|++|+++||+||+.|+|.|.++|+|||||++++.++. |++.+..|.++|+
T Consensus 320 ~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~~kA~ 380 (398)
T PRK12283 320 ETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKAR 380 (398)
T ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999998755 9999999988765
No 6
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=99.92 E-value=4.1e-25 Score=199.55 Aligned_cols=115 Identities=24% Similarity=0.264 Sum_probs=99.6
Q ss_pred ecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCCCC----------CCc---cchhhhhc-ccCCHHHHHHHHHHc
Q psy14868 31 IRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGR----------PRR---PDLRAYIT-SKITARKADIIIQDY 96 (209)
Q Consensus 31 ~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGg----------peT---cdVF~Ylk-F~eDDeeLEeI~~~c 96 (209)
++||+|.|||+|+|+|+|||+|+ |++|++||+++..+++ |+. +.+|+|+. |..+|++++++.++|
T Consensus 185 l~gl~~~KMSKS~~~s~I~L~D~-~e~I~~KI~~a~td~~~~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 263 (328)
T TIGR00233 185 LMGLSGKKMSKSDPNSAIFLTDT-PKQIKKKIRKAATDGGRVTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKY 263 (328)
T ss_pred CCCCCCCcCCCCCCCCeEeecCC-HHHHHHHHHhcCCCCCCCcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHH
Confidence 55777789999999999999997 9999999999644333 333 44588888 465677899999999
Q ss_pred ccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCccccc
Q psy14868 97 TSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRY 146 (209)
Q Consensus 97 rsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~a~~ 146 (209)
.+|+++||+||+.|++.|+++|+|+||||++++++.|++++..|..+|+.
T Consensus 264 ~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~~~~~~l~~g~~~a~~ 313 (328)
T TIGR00233 264 KSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEEILDKILEPGAKKARE 313 (328)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876553
No 7
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=1.6e-24 Score=195.70 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=102.5
Q ss_pred eeecccCCC--CCCCCCCC--CeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhhcccCCHHHHHH
Q psy14868 29 QVIRILLHS--KSNTTDLI--ISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYITSKITARKADI 91 (209)
Q Consensus 29 ~~~~gL~gg--KMSsS~p~--SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~YlkF~eDDeeLEe 91 (209)
.+++||+|+ |||+|+|+ |+|||+|+ |++|++||++ |+| |+|++|+||+|+++.. ++++++
T Consensus 182 ~~l~gL~g~~~KMSKS~~~~~~~I~l~D~-~~~I~~KI~~-a~td~~~~~~~~~~~~~~p~~~~l~~~~~~~~-~~~~ee 258 (333)
T PRK00927 182 ARVMGLDGPTKKMSKSDPNDNNTINLLDD-PKTIAKKIKK-AVTDSERLREIRYDLPNKPEVSNLLTIYSALS-GESIEE 258 (333)
T ss_pred ccccCCCCCCCCCCCCCCCCCCeEEeeCC-HHHHHHHHHh-CCCCCCcccccccCCCCCCccccHHHHHHHhC-CCCHHH
Confidence 349999998 99999998 99999997 9999999999 663 3377788999999533 357899
Q ss_pred HHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY 146 (209)
Q Consensus 92 I~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~ 146 (209)
++++|++|+++|||||+.|++.|+++|+|+||||++++++. |++.+..|.++|+.
T Consensus 259 l~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~~G~~~a~~ 315 (333)
T PRK00927 259 LEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILAEGAEKARA 315 (333)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998755 99999999988764
No 8
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=99.90 E-value=1.7e-24 Score=196.23 Aligned_cols=116 Identities=12% Similarity=0.113 Sum_probs=103.5
Q ss_pred eeeecccCC-CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC----------CCCCccchhhhhcc-cCCHHHHHHHHHH
Q psy14868 28 VQVIRILLH-SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS----------GRPRRPDLRAYITS-KITARKADIIIQD 95 (209)
Q Consensus 28 ~~~~~gL~g-gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p----------GgpeTcdVF~YlkF-~eDDeeLEeI~~~ 95 (209)
..+++||+| +|||+|++ ++|||+|+ |++|++||++ |+| |.|+.|++|+|+++ .++++++++++++
T Consensus 185 ~~~i~~L~g~~KMSKS~~-~~I~L~D~-pe~I~kKI~~-A~td~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~ 261 (333)
T PRK12282 185 AGRLPGLDGKAKMSKSLG-NAIYLSDD-ADTIKKKVMS-MYTDPNHIRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAH 261 (333)
T ss_pred CCcccCCCCCCcCCCCCC-CeeeeeCC-HHHHHHHHHh-CcCCCCCccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHH
Confidence 348999998 89999996 59999997 9999999999 664 56777889999994 5567899999999
Q ss_pred cccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868 96 YTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY 146 (209)
Q Consensus 96 crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~ 146 (209)
|++|+++|+|||+.|++.|+++|+|+||||++++.+. |++.+..|..+|+-
T Consensus 262 y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~vl~~G~~ka~~ 314 (333)
T PRK12282 262 YQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEILKAGSEKARE 314 (333)
T ss_pred HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998754 99999999887654
No 9
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=99.90 E-value=2e-24 Score=195.81 Aligned_cols=116 Identities=12% Similarity=0.017 Sum_probs=102.4
Q ss_pred eeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCC-------CCCCCccchhhhhcccCCHHHHHHHHHHcccCc
Q psy14868 28 VQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPL-------SGRPRRPDLRAYITSKITARKADIIIQDYTSGA 100 (209)
Q Consensus 28 ~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~-------pGgpeTcdVF~YlkF~eDDeeLEeI~~~crsG~ 100 (209)
.++++||+|+|||+|++ ++|+|+|+ |++|++||+++.. +|+|++|++|+|+++..+++++++++++|++ +
T Consensus 192 ~~~l~gLdg~KMSKS~~-n~I~L~D~-p~~I~kKI~ka~Td~~~~~~~~~p~~~~l~~i~~~~~~~~~~eei~~~y~~-~ 268 (332)
T PRK12556 192 GAILPGLDGRKMSKSYG-NVIPLFAE-QEKLRKLIFKIKTDSSLPNEPKDPETSALFTIYKEFATEEEVQSMREKYET-G 268 (332)
T ss_pred cccccCCCCCCCCCCCC-CcccccCC-HHHHHHHHHHhccCCCcccCCCCcchhHHHHHHHHHCCchhHHHHHHHHhc-C
Confidence 68999999999999996 67999997 9999999999521 3678889999999953355689999999988 8
Q ss_pred cchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868 101 LLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY 146 (209)
Q Consensus 101 IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~ 146 (209)
++||+||+.|++.|+++|+|+||||+++.++. |++.+..|..+||-
T Consensus 269 ~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~~~~il~~G~~kA~~ 316 (332)
T PRK12556 269 IGWGDVKKELFRVVDRELAGPREKYAMYMNEPSLLDEALEKGAERARE 316 (332)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998755 99999999887764
No 10
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=7.4e-24 Score=198.76 Aligned_cols=115 Identities=11% Similarity=-0.008 Sum_probs=102.6
Q ss_pred eeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCC--------CCCCCccchhhhhcccCCHHHHHHHHHHcccC
Q psy14868 28 VQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPL--------SGRPRRPDLRAYITSKITARKADIIIQDYTSG 99 (209)
Q Consensus 28 ~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~--------pGgpeTcdVF~YlkF~eDDeeLEeI~~~crsG 99 (209)
+..++||+|+|||+|+ +|+|+|+|+ |++|++||++ |+ +|.|++|+||+||++..++++.++++++|+ |
T Consensus 192 ~~~I~gLdg~KMSKS~-~n~I~L~Ds-~~~I~kKI~~-A~TDs~~~~~~~~pe~snLl~i~~~~~~~~~~eel~~~~~-~ 267 (431)
T PRK12284 192 VATLPGLDGRKMSKSY-DNTIPLFAP-REELKKAIFS-IVTDSRAPGEPKDTEGSALFQLYQAFATPEETAAFRQALA-D 267 (431)
T ss_pred cccccCCCCccccCCC-CCEeeecCC-HHHHHHHHhc-CCCCCCCCCCCCCCCcchHHHHHHHhCCcchHHHHHHHHh-c
Confidence 4689999999999998 589999997 9999999999 55 588888999999995445567899999998 5
Q ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868 100 ALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY 146 (209)
Q Consensus 100 ~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~ 146 (209)
+++||+||+.|+|.|.++|+|+||||+++.++. |++++..|.++|+.
T Consensus 268 g~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~~l~~iL~~Ga~kAr~ 316 (431)
T PRK12284 268 GIGWGDAKQRLFERIDRELAPMRERYEALIARPADIEDILLAGAAKARR 316 (431)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999998755 99999999887664
No 11
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=99.86 E-value=7.7e-22 Score=177.89 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=89.9
Q ss_pred eeeecccCCC--CCCCCCCCCeEEccCCChHHHHHHhhcCCCC--CCCCccchhhhhcc-cCCH----------------
Q psy14868 28 VQVIRILLHS--KSNTTDLIISLFLGQDDLYAVGTKASDQPLS--GRPRRPDLRAYITS-KITA---------------- 86 (209)
Q Consensus 28 ~~~~~gL~gg--KMSsS~p~SaI~LsDt~peeIrkKI~k~A~p--GgpeTcdVF~YlkF-~eDD---------------- 86 (209)
..+++||+|. |||+|+|+|+|+|+|+ |++|++||++ |+| |.++.|+||+|+++ ..++
T Consensus 202 ~~~l~~L~g~~~KMSKS~p~~~I~L~D~-~~~I~~KI~k-A~t~~~~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~ 279 (329)
T PRK08560 202 TPLLTGLDGGGIKMSKSKPGSAIFVHDS-PEEIRRKIKK-AYCPPGEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDL 279 (329)
T ss_pred cCccCCCCCCCCCCcCCCCCCeecccCC-HHHHHHHHHh-ccCCCCCcCCCcHHHHHHHHhhccccceEEechhhcCCCC
Confidence 4788999998 9999999999999997 9999999999 774 55777999999994 3231
Q ss_pred --HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868 87 --RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTE 130 (209)
Q Consensus 87 --eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltd 130 (209)
++.++++++|++|+++||+||+.|++.|+++|+|+|||+++-.+
T Consensus 280 ~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~ 325 (329)
T PRK08560 280 EYESYEELERDYAEGKLHPMDLKNAVAEYLIEILEPVREYLEEGPE 325 (329)
T ss_pred CcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCChh
Confidence 47899999999999999999999999999999999999987543
No 12
>PLN02886 aminoacyl-tRNA ligase
Probab=99.85 E-value=1.9e-21 Score=180.55 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=94.8
Q ss_pred eeecccCC--CCCCCCCCC--CeEEccCCChHHHHHHhhcCCC-----------CCCCCccchhhhhcccCCHHHHHHHH
Q psy14868 29 QVIRILLH--SKSNTTDLI--ISLFLGQDDLYAVGTKASDQPL-----------SGRPRRPDLRAYITSKITARKADIII 93 (209)
Q Consensus 29 ~~~~gL~g--gKMSsS~p~--SaI~LsDt~peeIrkKI~k~A~-----------pGgpeTcdVF~YlkF~eDDeeLEeI~ 93 (209)
+.+.||+| +|||+|+|+ |+|||+|+ +++|++||++ |. ||.|++|++|.+|.... +++.++|+
T Consensus 240 ~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds-~e~I~kKI~~-a~TD~~~~i~~~~p~~p~v~nl~~i~~~~~-~~~~eei~ 316 (389)
T PLN02886 240 ARVMSLTDGTSKMSKSAPSDQSRINLLDP-PDVIANKIKR-CKTDSFPGLEFDNPERPECNNLLSIYQLVT-GKTKEEVL 316 (389)
T ss_pred ceeeeCCCCCCcCCCCCCCCCCeEEecCC-HHHHHHHHhc-CCCCCCCCccCCCCCCcccccHHHHHHHcc-CCCHHHHH
Confidence 45667766 599999986 89999997 9999999999 54 35556678888888332 34679999
Q ss_pred HHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868 94 QDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY 146 (209)
Q Consensus 94 ~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~ 146 (209)
++|+ +++||+||+.|++.|+++|+||||||+++.++. |++.+..|.++||-
T Consensus 317 ~~~~--~~~~g~~K~~Lae~I~~~L~Pirer~~~l~~d~~~l~~iL~~Ga~kAr~ 369 (389)
T PLN02886 317 AECG--DMRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPSYLDSVLKEGADAAAE 369 (389)
T ss_pred HHhc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 9996 779999999999999999999999999998755 99999999887764
No 13
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=99.80 E-value=1.1e-19 Score=160.88 Aligned_cols=94 Identities=21% Similarity=0.250 Sum_probs=80.5
Q ss_pred cCcccee--eeecccCCC--CCCCCCCCCeEEccCCChHHHHHHhhcCCC----------CCCCCccchhhhhc-c-cCC
Q psy14868 22 LRKVAVV--QVIRILLHS--KSNTTDLIISLFLGQDDLYAVGTKASDQPL----------SGRPRRPDLRAYIT-S-KIT 85 (209)
Q Consensus 22 ~~~~~~~--~~~~gL~gg--KMSsS~p~SaI~LsDt~peeIrkKI~k~A~----------pGgpeTcdVF~Ylk-F-~eD 85 (209)
.|.+..- .+++||+|+ |||+|+|+|+|+|+|+ |++|++|||++.. +|+|+.|++|+|++ | .+|
T Consensus 171 ~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~-~~~i~~KI~~a~td~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (280)
T cd00806 171 KPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDS-PKEIKKKIMKAATDGGRTEHRRDGGGPGVSNLVEIYSAFFNDD 249 (280)
T ss_pred CCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCC-HHHHHHHHHhccCCCCCceecCCCCCCCcChHHHHHHHHhCCC
Confidence 3444444 899999997 9999999999999997 9999999999522 24677799999999 5 677
Q ss_pred HHHHHHHHHHcccCccchHHHHHHHHHHHHHH
Q psy14868 86 ARKADIIIQDYTSGALLTGELKKILIDTITPI 117 (209)
Q Consensus 86 DeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~ 117 (209)
+++++++ ++|++|+++||+||+.|++.|+++
T Consensus 250 ~~~~~~~-~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 250 DEELEEI-DEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred HHHHHHH-HHhhcCCCCHHHHHHHHHHHHHhC
Confidence 7888888 999999999999999999999864
No 14
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=99.78 E-value=5.1e-19 Score=163.70 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=85.4
Q ss_pred eeeecccC-C-CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC--CCCCccchhhhhcc-c---------CC-H------
Q psy14868 28 VQVIRILL-H-SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS--GRPRRPDLRAYITS-K---------IT-A------ 86 (209)
Q Consensus 28 ~~~~~gL~-g-gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p--GgpeTcdVF~YlkF-~---------eD-D------ 86 (209)
..+++||+ | +|||+|+|+++|+|+|+ |++|++|||+ |++ |.++.+++++|+++ . .+ +
T Consensus 245 ~~~lpgL~dg~~KMSKS~~ns~I~L~Ds-pe~I~kKI~k-A~t~p~~~~~npv~~~~~~~~~~~~~~~~I~r~~k~gg~~ 322 (383)
T PTZ00126 245 HHMLPGLLEGQEKMSKSDPNSAIFMEDS-EEDVNRKIKK-AYCPPGVIEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDV 322 (383)
T ss_pred ccccccCCCCCCCCCcCCCCCeecCCCC-HHHHHHHHHh-CcCCCCCCCCCcchhhhhhcccccccceeEeccccccCcc
Confidence 47888996 4 59999999999999997 9999999999 774 55677888998883 1 11 1
Q ss_pred --HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhc
Q psy14868 87 --RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGV 128 (209)
Q Consensus 87 --eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~el 128 (209)
++.++++++|++|+++|++||+.|++.|+++|+|+|+|+++=
T Consensus 323 ~~~~~eel~~~y~~g~l~p~dlK~~lae~i~~~L~PIRe~~~~~ 366 (383)
T PTZ00126 323 TYTTYEELEKDYLSGALHPGDLKPALAKYLNLMLQPVRDHFQNN 366 (383)
T ss_pred CcCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999999999754
No 15
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.74 E-value=3.9e-18 Score=167.60 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=86.1
Q ss_pred eeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCC-------------CCCC----Cccchhhhhcc--cCC-
Q psy14868 28 VQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPL-------------SGRP----RRPDLRAYITS--KIT- 85 (209)
Q Consensus 28 ~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~-------------pGgp----eTcdVF~YlkF--~eD- 85 (209)
.++++||+| +|||+|+|+|+|||+|+ |++|++||++ |+ +|+| +.|+||+|+++ .+.
T Consensus 210 ~~~LpGL~gg~~KMSKS~p~naI~L~Ds-pe~I~kKI~k-A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~ 287 (682)
T PTZ00348 210 HHMLAGLKQGQAKMSKSDPDSAIFMEDT-EEDVARKIRQ-AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARP 287 (682)
T ss_pred cccCcCCCCCCCcCCCCCCCCeecccCC-HHHHHHHHHh-CCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhcccc
Confidence 478999986 49999999999999997 9999999998 54 3455 66999999884 221
Q ss_pred -------H---HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhch
Q psy14868 86 -------A---RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVT 129 (209)
Q Consensus 86 -------D---eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~elt 129 (209)
+ +..++++++|++|+++||+||+.|++.|+++|+|+|+++++=.
T Consensus 288 g~~~~i~~~~~~~~eele~~y~~g~l~~~dlK~~lae~l~~~L~PIRe~~~~~~ 341 (682)
T PTZ00348 288 GAVATIDGTTYATYEDLEQAFVSDEVSEEALKSCLIDEVNALLEPVRQHFASNP 341 (682)
T ss_pred chhcccCCcccCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 2 4679999999999999999999999999999999999998654
No 16
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=99.59 E-value=9.9e-16 Score=134.30 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=77.9
Q ss_pred cCccc--eeeeecccCCC-CCCCCCCCCeEEccCCChHHHHHHhhcCCCC-CCCCc----------cc-hhhhhc-ccCC
Q psy14868 22 LRKVA--VVQVIRILLHS-KSNTTDLIISLFLGQDDLYAVGTKASDQPLS-GRPRR----------PD-LRAYIT-SKIT 85 (209)
Q Consensus 22 ~~~~~--~~~~~~gL~gg-KMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-GgpeT----------cd-VF~Ylk-F~eD 85 (209)
+++|+ ..++++||+|+ |||+|+|+++|||.|+ ++++++||++ +++ ++++. ++ +++++. |..+
T Consensus 179 ~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~-~~~i~~Ki~~-a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 256 (292)
T PF00579_consen 179 FPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS-PEEIRKKIKK-AFCDPDRENPRLLKGRPFISPFLIERLEAFHGN 256 (292)
T ss_dssp SSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT-HHHHHHHHHH-SHTSTTSHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccCchheeeccccccCCccccCccCCccEEEEecc-chhHHHHHHH-HhhCCCcccccccccCCCCCHHHHHHHHHhcCC
Confidence 33444 45799999999 9999999999999997 9999999999 554 33322 55 577777 5544
Q ss_pred HH--HHHHHHHHcccCccchHHHHHHHHHHHHHHhH
Q psy14868 86 AR--KADIIIQDYTSGALLTGELKKILIDTITPIVT 119 (209)
Q Consensus 86 De--eLEeI~~~crsG~IgcGEcKK~LaE~I~e~La 119 (209)
+. +++++.++|..|.+.++|+|+.+++.++++|+
T Consensus 257 ~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 257 DDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp HHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 43 78999999999999999999999999999985
No 17
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.56 E-value=4.3e-15 Score=130.63 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=70.9
Q ss_pred eeecccCCCCCCCCCCCCe-EEccCCChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccchHH
Q psy14868 29 QVIRILLHSKSNTTDLIIS-LFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALLTGE 105 (209)
Q Consensus 29 ~~~~gL~ggKMSsS~p~Sa-I~LsDt~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~IgcGE 105 (209)
.+++||+|+|||+|++++. |++.|+ |++|++||++ |+++ +|++|++ | ..+++++++++++|++|.+ +++
T Consensus 186 ~ll~~l~G~KMSKS~~~~~~i~l~ds-p~~i~~Ki~~-a~~~-----~v~~~l~~~~~~~~~~~eel~~~~~~~~~-~~~ 257 (269)
T cd00805 186 PLLTGLDGGKMSKSEGNAIWDPVLDS-PYDVYQKIRN-AFDP-----DVLEFLKLFTFLDYEEIEELEEEHAEGPL-PRD 257 (269)
T ss_pred ccccCCCCCcccCCCCCcccccCCCC-HHHHHHHHHc-CCcH-----HHHHHHHHHHcCCHHHHHHHHHHHhcCCC-HHH
Confidence 6788999999999999988 899997 9999999999 7766 5577777 3 4467799999999999998 999
Q ss_pred HHHHHHHHHHH
Q psy14868 106 LKKILIDTITP 116 (209)
Q Consensus 106 cKK~LaE~I~e 116 (209)
+|+.|++.|++
T Consensus 258 ~K~~la~~i~~ 268 (269)
T cd00805 258 AKKALAEELTK 268 (269)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 18
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.42 E-value=3e-13 Score=119.66 Aligned_cols=81 Identities=10% Similarity=-0.011 Sum_probs=69.4
Q ss_pred eeecccCCCCCCCCCCCCe--EEccCCChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccchH
Q psy14868 29 QVIRILLHSKSNTTDLIIS--LFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALLTG 104 (209)
Q Consensus 29 ~~~~gL~ggKMSsS~p~Sa--I~LsDt~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~IgcG 104 (209)
.+++||+|.|||+|++++. |++.|+ |+++++||++ ++ .++|+.|++ | ..+.+++++|+++|.+|. +.|
T Consensus 189 p~l~~l~G~KMSKS~~~~i~l~~~~ds-p~~i~~ki~~-a~-----d~~v~~~~~~~t~~~~~ei~~i~~~~~~~~-~~~ 260 (273)
T cd00395 189 PLVTKLDGPKFGKSESGPKWLDTEKTS-PYEFYQFWIN-AV-----DSDVINILKYFTFLSKEEIERLEQEQYEAP-GYR 260 (273)
T ss_pred ccccCCCCCcCCCCCCCCccccccCCC-HHHHHHHHHc-cc-----HhHHHHHHHHHcCCCHHHHHHHHHHHhcCC-CHH
Confidence 7899999999999999886 458997 9999999999 54 477888888 4 567889999999998876 569
Q ss_pred HHHHHHHHHHHHH
Q psy14868 105 ELKKILIDTITPI 117 (209)
Q Consensus 105 EcKK~LaE~I~e~ 117 (209)
+||+.|++.|.++
T Consensus 261 ~~K~~La~~i~~~ 273 (273)
T cd00395 261 VAQKTLAEEVTKT 273 (273)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999763
No 19
>KOG2144|consensus
Probab=99.40 E-value=8.2e-13 Score=120.51 Aligned_cols=98 Identities=19% Similarity=0.237 Sum_probs=81.2
Q ss_pred ecccC-CCCCCCCCCCCeEEccCCChHHHHHHhhcCCC--CCCCCccchhhhhc---c--cC---------CH-------
Q psy14868 31 IRILL-HSKSNTTDLIISLFLGQDDLYAVGTKASDQPL--SGRPRRPDLRAYIT---S--KI---------TA------- 86 (209)
Q Consensus 31 ~~gL~-ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~--pGgpeTcdVF~Ylk---F--~e---------DD------- 86 (209)
.+||+ |+|||||+|+|.|+|.|+ |+++++||++ || ||+-+.....+|.+ | .+ ++
T Consensus 214 vPGL~q~~KMSsSd~~SkIdllD~-~~~V~kKI~k-AfCePg~ve~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~t 291 (360)
T KOG2144|consen 214 VPGLAQGEKMSSSDPLSKIDLLDE-PADVNKKIKK-AFCEPGNVEGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKT 291 (360)
T ss_pred CccccccCccccCCcccccccccC-HHHHHHHHHH-hcCCCCCcCCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcch
Confidence 46999 999999999999999997 9999999999 88 78877744433333 2 11 11
Q ss_pred -HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868 87 -RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTE 130 (209)
Q Consensus 87 -eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltd 130 (209)
+.-|+|+.+|..|++--|++|+-|...||++|.++|+.-+...+
T Consensus 292 f~syed~e~~y~~~~lhPgDLK~~l~~alN~lL~~ir~~~~~~~~ 336 (360)
T KOG2144|consen 292 FKSYEDIEKDYEEGELHPGDLKKGLEKALNELLQPIREEFSNWPE 336 (360)
T ss_pred hHHHHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 14788999999999999999999999999999999998877554
No 20
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=99.38 E-value=8.5e-13 Score=122.92 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=77.0
Q ss_pred eeecccCCCCCCCCCCCCeEEccC---CChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccch
Q psy14868 29 QVIRILLHSKSNTTDLIISLFLGQ---DDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALLT 103 (209)
Q Consensus 29 ~~~~gL~ggKMSsS~p~SaI~LsD---t~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Igc 103 (209)
-+++|++|.|||+|. +++|+|+| + |+++++||++. .++ +|+.|++ | .-++++++++.++|++|. .+
T Consensus 223 plL~~~~G~KMsKS~-~naI~L~d~~ts-p~~i~qki~~~---~D~---~v~~~l~~~t~~~~~ei~~l~~~~~~g~-~~ 293 (408)
T PRK05912 223 PLLTGLDGKKMGKSE-GNAVWLDEEKTS-PYEMYQKWMNI---SDA---DVWRYLKLLTFLSLEEIEELEEELAEGP-NP 293 (408)
T ss_pred CCcCCCCCCcccCCC-CCceeCCCCCCC-HHHHHHHHhcC---ChH---HHHHHHHHHhcCCHHHHHHHHHHHhcCC-Ch
Confidence 356699999999998 89999999 9 99999999983 333 3555555 3 225668999999999999 99
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868 104 GELKKILIDTITPIVTHHQEAMKGVTE 130 (209)
Q Consensus 104 GEcKK~LaE~I~e~LaphQERR~eltd 130 (209)
+++|+.|++.|.+++...++..+....
T Consensus 294 ~~~Kk~LA~~v~~~lhg~~~~~~a~~~ 320 (408)
T PRK05912 294 REAKKVLAEEITALVHGEEAAEAAEEA 320 (408)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 999999999999999998887765543
No 21
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=99.33 E-value=2.9e-12 Score=119.67 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=80.9
Q ss_pred eeeecccCCCCCCCCCCCCeEEccCCC---hHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccc
Q psy14868 28 VQVIRILLHSKSNTTDLIISLFLGQDD---LYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALL 102 (209)
Q Consensus 28 ~~~~~gL~ggKMSsS~p~SaI~LsDt~---peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Ig 102 (209)
.-+++|++|.|||+|. .++|+|+| + |+++++||++. ++ .+|+.|++ | ..++++++++.++|+.|..
T Consensus 220 ~PlL~g~dG~KMsKS~-~naI~L~d-~~tsp~~i~qki~~~-----~D-~~v~~~l~~~t~l~~~ei~~l~~~~~~~~~- 290 (410)
T PRK13354 220 MPLLEGADGTKMGKSA-GGAIWLDP-EKTSPYEFYQFWMNI-----DD-RDVVKYLKLFTDLSPDEIDELEAQLETEPN- 290 (410)
T ss_pred cCCccCCCCCccCCCC-CCceeccC-CCCCHHHHHHHHHcC-----Ch-HHHHHHHHHHhCCCHHHHHHHHHHHhcCCC-
Confidence 3466799999999996 57999999 7 99999999983 33 67799999 5 3467899999999999876
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868 103 TGELKKILIDTITPIVTHHQEAMKGVTE 130 (209)
Q Consensus 103 cGEcKK~LaE~I~e~LaphQERR~eltd 130 (209)
++++|+.|++.|++++..+++.++....
T Consensus 291 ~~~~Kk~LA~~v~~~vhg~~~~~~a~~~ 318 (410)
T PRK13354 291 PRDAKKVLAEEITKFVHGEEAAEEAEKI 318 (410)
T ss_pred hHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 9999999999999999999998877664
No 22
>KOG2713|consensus
Probab=99.07 E-value=1.2e-10 Score=106.22 Aligned_cols=105 Identities=11% Similarity=0.127 Sum_probs=85.7
Q ss_pred CCCCCCCCC--CeEEccCCChHHHHHHhhcCCC----------C-CCCCccchhhhhcccCCHHHHHHHHHHcccCccch
Q psy14868 37 SKSNTTDLI--ISLFLGQDDLYAVGTKASDQPL----------S-GRPRRPDLRAYITSKITARKADIIIQDYTSGALLT 103 (209)
Q Consensus 37 gKMSsS~p~--SaI~LsDt~peeIrkKI~k~A~----------p-GgpeTcdVF~YlkF~eDDeeLEeI~~~crsG~Igc 103 (209)
.|||.|+|+ +.|+|+|+ |++|.+||+++ . | ++|++.|+..+|.-... ...++|.+ ++..+.+
T Consensus 210 kKMSKSd~n~~s~I~l~DS-~~~I~~Ki~ka-~TD~~~~vtYd~~~RpgvsNLlni~aaVt~-~s~eeV~~--~~a~~~~ 284 (347)
T KOG2713|consen 210 KKMSKSDPNPKSRINLTDS-PDLIVKKIKKA-QTDNTSGVTYDPANRPGVSNLLNIYAAVTG-KSIEEVVE--ESANMST 284 (347)
T ss_pred hhcccCCCCCcceEEecCC-HHHHHHHHHHH-hcccccceeeCCccccchhHHHHHHHHHcC-CCHHHHHH--HhccCCH
Confidence 499999987 89999997 99999999994 4 2 55666777777774222 35677776 5667889
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868 104 GELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY 146 (209)
Q Consensus 104 GEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~ 146 (209)
++.|..++|.|.+.|+|+|++.+++..+. +++.+..|.++|+-
T Consensus 285 ~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~~GaekAre 329 (347)
T KOG2713|consen 285 ADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLEEGAEKARE 329 (347)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999998744 99999999887653
No 23
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=98.73 E-value=4.6e-08 Score=97.16 Aligned_cols=110 Identities=12% Similarity=0.134 Sum_probs=83.8
Q ss_pred hhHHHhhhcCccc-----eeeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCC--CCCCCccchhhhhcc-c
Q psy14868 14 VNAFITTILRKVA-----VVQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPL--SGRPRRPDLRAYITS-K 83 (209)
Q Consensus 14 ~~~~~~~~~~~~~-----~~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~--pGgpeTcdVF~YlkF-~ 83 (209)
+|.+-|..+|+.+ .-.-.+||.+ .+|+.++|+|+||+.|+ +++|++||++ || |+ -+.++|.+|.+| .
T Consensus 525 i~mlAre~~~~~~~~~~~~~~~~p~l~~~~~~~~~~s~~s~i~~~D~-~~~i~~Ki~k-A~Cpp~-~~~Npvl~~~~y~~ 601 (682)
T PTZ00348 525 INEFAREYTKGRIECIQALEGRVPALHRPGAAPAVLGADDVLYLDDN-DMDIRRKIKK-AYSAPN-EEANPVISVAQHLL 601 (682)
T ss_pred HHHHHHHhccccccchhhcCCCCccccccccccCCCCCCCeeeecCC-HHHHHHHHHh-CCCCCC-CCCCcHHHHHHHHh
Confidence 4677788888422 2222447762 26777789999999997 9999999999 77 54 355777666653 1
Q ss_pred C---------CH--------HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHh
Q psy14868 84 I---------TA--------RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMK 126 (209)
Q Consensus 84 e---------DD--------eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~ 126 (209)
+ .+ +..++++++|.+|.+--+++|.-+++.|+++|+|.|+.-+
T Consensus 602 ~~~~~~~i~R~e~~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 602 AQQGALSIERGEANGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred cCCCeEEEecccccCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11 1478999999999999999999999999999999998875
No 24
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.91 E-value=0.0018 Score=60.32 Aligned_cols=72 Identities=13% Similarity=0.017 Sum_probs=50.2
Q ss_pred eeecccCCCCCCCC--------CC--CCeEEccCCChHHHHHHhhcCCCCCCCCccchhhhhcccCCHHHHHHHHHHccc
Q psy14868 29 QVIRILLHSKSNTT--------DL--IISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYITSKITARKADIIIQDYTS 98 (209)
Q Consensus 29 ~~~~gL~ggKMSsS--------~p--~SaI~LsDt~peeIrkKI~k~A~pGgpeTcdVF~YlkF~eDDeeLEeI~~~crs 98 (209)
-++++++|.|||.| .| +++||+.|+ |+++.+||++ ++| + .+.+++++|.+ .
T Consensus 212 pLl~~~dg~KmgKS~~~~i~l~~~~~~~~i~~~d~-~D~~~~Ki~k-~~t-------------~-~~~~ei~~l~~---~ 272 (377)
T TIGR00234 212 PLLTPADGEKMGKSGGGAVSLDEGKYDFYQFWINT-PDEDVKKILK-LFT-------------F-LGLEEIEALVE---L 272 (377)
T ss_pred eeecCCCCCCccCCCCCcccCCccHhhhhhhhcCC-cHHHHHHHHH-HcC-------------C-CcHHHHHHHHH---h
Confidence 35667777888887 34 599999997 9999999998 431 2 23457777754 2
Q ss_pred CccchHHHHHHHHHHHHHHhH
Q psy14868 99 GALLTGELKKILIDTITPIVT 119 (209)
Q Consensus 99 G~IgcGEcKK~LaE~I~e~La 119 (209)
..-.-.+.|+.|+..+.+++-
T Consensus 273 ~~~~~~~~q~~la~ei~~~vh 293 (377)
T TIGR00234 273 KGPSPREVKENLAKEITKYVH 293 (377)
T ss_pred cccCHHHHHHHHHHHHHHHhc
Confidence 223446789888877766654
No 25
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.013 Score=55.61 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=56.9
Q ss_pred eeecccCCC---------CCCCCCCCCeEEccCCChHHHHHHhhcCCCCCCCCccchhhhhcccCCHHHHHHHHHHcccC
Q psy14868 29 QVIRILLHS---------KSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYITSKITARKADIIIQDYTSG 99 (209)
Q Consensus 29 ~~~~gL~gg---------KMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGgpeTcdVF~YlkF~eDDeeLEeI~~~crsG 99 (209)
-+++||+|. +||.|+++|.|.+.+. +..|.+|+++ + .+.++.|. .-+++++|.+....+
T Consensus 215 PLL~~ldG~KmgKs~~~a~~~~s~~~Sp~~~yq~-~~~i~D~~~~-~---------~~~~~t~l-~~~eI~~i~~~~~~~ 282 (401)
T COG0162 215 PLLTGLDGKKMGKSEGGAVWLDSEKTSPYDFYQY-WMNIEDADVK-R---------FLKLLTFL-SLEEIEEIEKYVLKG 282 (401)
T ss_pred ccccCCCCCcccccCCCceEccCCCCCcHhhhhc-HhcCcHHHHH-H---------HHHHhCcC-ChHHHHHHHHHhhcC
Confidence 356699996 7778888889999996 8999888886 3 23333344 335888898877777
Q ss_pred ccchHHHHHHHHHHHHHHhH
Q psy14868 100 ALLTGELKKILIDTITPIVT 119 (209)
Q Consensus 100 ~IgcGEcKK~LaE~I~e~La 119 (209)
. .--++|+.||..+...+-
T Consensus 283 ~-~~r~~k~~LA~e~~~~~h 301 (401)
T COG0162 283 P-EPREAKKLLAKEVTKLVH 301 (401)
T ss_pred C-ChHHHHHHHHHHhhHhhc
Confidence 6 555899999998766543
No 26
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=48.08 E-value=14 Score=23.38 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=23.5
Q ss_pred HHHHHHHHcccCccchHHHHHHHHHHHHHHh
Q psy14868 88 KADIIIQDYTSGALLTGELKKILIDTITPIV 118 (209)
Q Consensus 88 eLEeI~~~crsG~IgcGEcKK~LaE~I~e~L 118 (209)
..+++++.|+.-++-+.--|+.|++.|.+++
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 3566778888887766666999999998875
No 27
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=37.61 E-value=12 Score=27.80 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=46.8
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCccccccCceeEEeeeeeeecCCCCCeeeecCC
Q psy14868 102 LTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPDQVYLSSG 173 (209)
Q Consensus 102 gcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (209)
.+-|-|+.|++.|.+.+.++=....+...-.+.+ +. +++|.+.+| +.|..+++|..|=+.|
T Consensus 13 ~s~EqK~~La~~iT~a~~~~lg~~~e~v~V~I~e-v~----~~~W~~~vy------~~ei~~~~~~l~k~p~ 73 (76)
T PRK01271 13 LDEEQKAALAADITDVIIRHLNSKDSSISIALQQ-IQ----PESWQAEVW------DAEIAPQMDALIKKPG 73 (76)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEE-cC----HHHhhHHhc------CcccccChhheecCCC
Confidence 3678999999999999999888877777522332 22 588988886 6788999998887665
No 28
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=37.36 E-value=16 Score=35.68 Aligned_cols=30 Identities=7% Similarity=-0.120 Sum_probs=20.5
Q ss_pred cCccceeeeecccCCCCCCCCCCCCeEEccC
Q psy14868 22 LRKVAVVQVIRILLHSKSNTTDLIISLFLGQ 52 (209)
Q Consensus 22 ~~~~~~~~~~~gL~ggKMSsS~p~SaI~LsD 52 (209)
.|..-+--|+...+|+|||+|. .+.|.+.|
T Consensus 264 ~P~~~~y~~v~~~~G~KMSKSk-GN~i~~~d 293 (510)
T PRK00750 264 PPEPFVYELFLDKKGEKISKSK-GNVITIED 293 (510)
T ss_pred CCeeeeeeeEEeCCCCcccccC-CCccCHHH
Confidence 3555555556655699999997 67776655
No 29
>PRK07217 replication factor A; Reviewed
Probab=35.64 E-value=1.6e+02 Score=27.72 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=60.9
Q ss_pred HHHHHHHHHcccCccc--hHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCcccc-----ccCceeEEeeeeee
Q psy14868 87 RKADIIIQDYTSGALL--TGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDR-----YTDQIYLTSTHYQV 159 (209)
Q Consensus 87 eeLEeI~~~crsG~Ig--cGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~a~-----~~~~~~~~~~~~~~ 159 (209)
+..++|.+++..-++. =-+++++|-..|++|=-|..|.++.+++..+++|=..+....+ ..+-.=|+.-.=+|
T Consensus 6 ~~aeei~~~~s~lgvdv~~~~ie~~L~~Lv~ey~VP~~EA~rSv~~~~~~k~g~~~~~~~~~~~~~~~kI~Di~~~~~~V 85 (311)
T PRK07217 6 QHAEEIHEQFSDLGVDVSVEDVEERLDTLVTEFKVPEDEARRSVTNYYLKEAGIDRDELSGGGGSELVNIADIDEPEQWV 85 (311)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCccccccCCCCCceeeeecCCCCCcE
Confidence 4678888888885444 6789999999999999999999999999889999887653222 12233345455667
Q ss_pred ecCCCCCeee
Q psy14868 160 DLTGRPDQVY 169 (209)
Q Consensus 160 ~~~~~~~~~~ 169 (209)
+++|+--+++
T Consensus 86 sV~aKVl~l~ 95 (311)
T PRK07217 86 DVTAKVVQLW 95 (311)
T ss_pred EEEEEEEEec
Confidence 7777755554
No 30
>KOG2967|consensus
Probab=33.94 E-value=36 Score=31.93 Aligned_cols=40 Identities=35% Similarity=0.546 Sum_probs=28.4
Q ss_pred eEEeeeeeeecCCCC----CeeeecCC----CCCCCCCeeeecCCCCC
Q psy14868 151 YLTSTHYQVDLTGRP----DQVYLSSG----LPDSRPDQVYLSSGLPD 190 (209)
Q Consensus 151 ~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~ 190 (209)
+....-+....+++| +-|||++. |+|..|+.||+-.|+-|
T Consensus 164 ~~~~~~~~~~~s~~~~kkenlVYLT~ds~~vL~dldp~~vYiIGglVD 211 (314)
T KOG2967|consen 164 WKRIILYPECTSLLPFKKENLVYLTADSENVLEDLDPDKVYIIGGLVD 211 (314)
T ss_pred ceeeeccccccccccCCccceEEECCCCccchhccCCCcEEEEEEEec
Confidence 333333456677775 56899987 77889999998777655
No 31
>PF04275 P-mevalo_kinase: Phosphomevalonate kinase ; InterPro: IPR005919 Phosphomevalonate kinase (2.7.4.2 from EC) catalyzes the phosphorylation of 5-phosphomevalonate into 5-diphosphomevalonate, an essential step in isoprenoid biosynthesis via the mevalonate pathway. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the higher eukaryotic form and the ERG8 type. This model represents the form of the enzyme found in animals. ; GO: 0004631 phosphomevalonate kinase activity, 0006695 cholesterol biosynthetic process, 0005737 cytoplasm; PDB: 3CH4_B.
Probab=32.95 E-value=38 Score=27.51 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=27.2
Q ss_pred cCccchHHHHHHHHHHHHHHhH-----------HHHHHHhhchHHHhhhhhcCCCccccccC
Q psy14868 98 SGALLTGELKKILIDTITPIVT-----------HHQEAMKGVTEEHGKLTSSSSGRPDRYTD 148 (209)
Q Consensus 98 sG~IgcGEcKK~LaE~I~e~La-----------phQERR~eltdd~V~eFm~~g~l~a~~~~ 148 (209)
+|+-.|| |..+++.+.+.|. |+++-+++.+.-++++-+..++-|+.|+.
T Consensus 2 sGkrksG--KDy~a~~l~~~l~~~~~~iv~iS~p~K~~yA~~~glDl~~LL~d~~YKE~~R~ 61 (116)
T PF04275_consen 2 SGKRKSG--KDYCADILASRLGEDNCRIVSISDPIKREYAEAHGLDLDRLLSDRAYKEQYRP 61 (116)
T ss_dssp EE-TTSS--HHHHHHHHHHHH-TTTEEEE-THHHHHHHHHHTTT-------------SSHHH
T ss_pred CCCcCCC--chHHHHHHHHHHhhccCcEEEechHHHHHHHHHhCcCHHHHhcCcchHHHHHH
Confidence 5777788 9999999988887 68888888888789999999877766654
No 32
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=30.85 E-value=27 Score=23.44 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=17.5
Q ss_pred HHHHHHHhhchHHH--hhhhhcCCC
Q psy14868 119 THHQEAMKGVTEEH--GKLTSSSSG 141 (209)
Q Consensus 119 aphQERR~eltdd~--V~eFm~~g~ 141 (209)
+||..||+++.++- |++.|-..+
T Consensus 13 ePH~~RRk~IL~k~PeIk~L~G~dp 37 (39)
T PF08557_consen 13 EPHASRRKEILKKHPEIKKLMGPDP 37 (39)
T ss_pred CccHHHHHHHHHhChHHHHHhCCCC
Confidence 58999999998754 777776543
No 33
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.96 E-value=28 Score=32.32 Aligned_cols=59 Identities=25% Similarity=0.381 Sum_probs=39.1
Q ss_pred ceeEEeeeeeeecCCCCCeeeecCCCCCCCCCeeee-cCCCC---Cchhhhhee-----eeeeeccCC
Q psy14868 149 QIYLTSTHYQVDLTGRPDQVYLSSGLPDSRPDQVYL-SSGLP---DSEWLAYVV-----ACVSVSGSS 207 (209)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~-----~~~~~~~~~ 207 (209)
+|-+...|+...+...+|-|..|+|+|...|.-... --|+| +.|+++.+. -.+.|+||.
T Consensus 52 gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~ 119 (445)
T PRK04308 52 GLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSN 119 (445)
T ss_pred CcEEEeCCCCHHHHhCCCEEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCC
Confidence 333333444444456789999999999888865443 25666 677876653 368888874
No 34
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=29.53 E-value=41 Score=20.92 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=22.0
Q ss_pred HHHHHHHcccCccchHHHHHHHHHHHHHHh
Q psy14868 89 ADIIIQDYTSGALLTGELKKILIDTITPIV 118 (209)
Q Consensus 89 LEeI~~~crsG~IgcGEcKK~LaE~I~e~L 118 (209)
.+++++.|+.-++-+.=-|+.|++.|.+++
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 355667777766666667999999988764
No 35
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=28.80 E-value=45 Score=27.16 Aligned_cols=39 Identities=3% Similarity=-0.084 Sum_probs=29.6
Q ss_pred hcCccceeeeecccCCC--------CCCCCCCCCeEEccCCChHHHHH
Q psy14868 21 ILRKVAVVQVIRILLHS--------KSNTTDLIISLFLGQDDLYAVGT 60 (209)
Q Consensus 21 ~~~~~~~~~~~~gL~gg--------KMSsS~p~SaI~LsDt~peeIrk 60 (209)
.+.+.|..||++|++-. +.-...-.+++|..+. |+.+.+
T Consensus 3 ~~~~~a~IQF~~Gi~E~~vp~VrLtRsrdG~tG~A~f~F~~-p~~l~~ 49 (113)
T PRK13610 3 KINENVAIQFVKGENEKDQPEIRLFRNLDGKKGKAVYKFYK-PKTITL 49 (113)
T ss_pred ccCCCcEEEEecCCCCCcCCceEEEEccCCCccEEEEEECC-chhccc
Confidence 35678899999999877 3444455689999997 988855
No 36
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=27.04 E-value=78 Score=32.34 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=24.7
Q ss_pred HHHHHHHHcccCccchHHHHHHHHHHHHHHhH
Q psy14868 88 KADIIIQDYTSGALLTGELKKILIDTITPIVT 119 (209)
Q Consensus 88 eLEeI~~~crsG~IgcGEcKK~LaE~I~e~La 119 (209)
.+++++...+.| .+||.|+.++.+.|++.+.
T Consensus 434 ~~~~v~~~t~ag-~~Cg~C~~~~~~il~~~~~ 464 (785)
T TIGR02374 434 TVEELKACTKAG-TSCGGCKPLVEQLLRAELN 464 (785)
T ss_pred CHHHHHHhCCCC-CCCcCHHHHHHHHHHHHHh
Confidence 577777666666 5999999999999986666
No 37
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=26.41 E-value=29 Score=32.60 Aligned_cols=29 Identities=10% Similarity=-0.104 Sum_probs=18.4
Q ss_pred CccceeeeecccCCC-CCCCCCCCCeEEccCC
Q psy14868 23 RKVAVVQVIRILLHS-KSNTTDLIISLFLGQD 53 (209)
Q Consensus 23 ~~~~~~~~~~gL~gg-KMSsS~p~SaI~LsDt 53 (209)
|..-+-.|+ .|.|+ |||+|. .+.|.+.|=
T Consensus 260 P~~~~ye~V-~l~gg~KMSKSk-GnvI~~~dl 289 (353)
T cd00674 260 PVPVMYEFI-GLKGGGKMSSSK-GNVITPSDW 289 (353)
T ss_pred CeEEEeeeE-EeCCCCccCCCC-CCcCCHHHH
Confidence 444344444 36676 999996 677776653
No 38
>KOG2146|consensus
Probab=26.13 E-value=36 Score=32.15 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCccccccCceeEEeeeeeeecCCCCC
Q psy14868 105 ELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPD 166 (209)
Q Consensus 105 EcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~a~~~~~~~~~~~~~~~~~~~~~~ 166 (209)
+++|.=+|+|..++..-=--=-.+.||+|-+|... ...+..||-.--.|+.|||--.
T Consensus 36 DmsKvnleVlkPWItkrvneilgfEDdVViefvyn-----qLee~k~ldpkkmQiNlTGFLn 92 (354)
T KOG2146|consen 36 DMSKVNLEVLKPWITKRVNEILGFEDDVVIEFVYN-----QLEEAKNLDPKKMQINLTGFLN 92 (354)
T ss_pred chhhcchhhhhHHHHHHHHHhhccccchhHHHHHH-----HHhhhcCCCchheeeeeehhcc
Confidence 44555555554444332222224567889999873 4445577777777888887543
No 39
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=25.73 E-value=40 Score=30.78 Aligned_cols=25 Identities=12% Similarity=-0.290 Sum_probs=16.1
Q ss_pred cceeeeecccCCCCCCCCCCCCeEEc
Q psy14868 25 VAVVQVIRILLHSKSNTTDLIISLFL 50 (209)
Q Consensus 25 ~~~~~~~~gL~ggKMSsS~p~SaI~L 50 (209)
.-+-.++..++|+|||.|.-+ +|.+
T Consensus 286 ~~~hg~~~~~~g~KmSKS~gn-~i~~ 310 (338)
T cd00818 286 VIVHGFVLDEDGRKMSKSLGN-YVDP 310 (338)
T ss_pred EEEEeeEECCCCCCCCCCCCC-cCCH
Confidence 334455555689999999654 4543
No 40
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=25.47 E-value=2e+02 Score=25.25 Aligned_cols=77 Identities=9% Similarity=0.063 Sum_probs=52.4
Q ss_pred cCCHHHH----HHHHHHcccCccchHHHHHHHHHHH--HHHhHHHHHHHhhchHHHhhhhhcCCCccccccCceeEEeee
Q psy14868 83 KITARKA----DIIIQDYTSGALLTGELKKILIDTI--TPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTH 156 (209)
Q Consensus 83 ~eDDeeL----EeI~~~crsG~IgcGEcKK~LaE~I--~e~LaphQERR~eltdd~V~eFm~~g~l~a~~~~~~~~~~~~ 156 (209)
.-+|+++ ++.++.....|+..-+.++.+-..| +.++...-..|..++++.|++|....+ +.+...-+....|
T Consensus 51 ~v~~~ev~~~~e~~~~~L~~~G~~~~~~r~~ir~~i~~~~~~~~~~~~~i~ise~ei~~yy~~~~--~~~~~~e~~~~~h 128 (256)
T TIGR02933 51 VIPPSLLEEAPQALAQALDEQALDAAERRAMLAHHLRLEAQLACVCAQAPQPDDADVEAWYRRHA--EQFKRPEQRLTRH 128 (256)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--HhcCCCCeEEEEE
Confidence 4466677 7788888888998888888776633 555555555667889999999987543 3344444455556
Q ss_pred eeeec
Q psy14868 157 YQVDL 161 (209)
Q Consensus 157 ~~~~~ 161 (209)
--+..
T Consensus 129 Ili~~ 133 (256)
T TIGR02933 129 LLLTV 133 (256)
T ss_pred EEEEC
Confidence 65554
No 41
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=24.83 E-value=29 Score=30.86 Aligned_cols=57 Identities=16% Similarity=-0.154 Sum_probs=37.5
Q ss_pred cceeeeeehhhhHHHhhhcCcc--ceeeeecccCCCCCCCCCCCCeEEcc----CCChHHHHHHhhc
Q psy14868 4 FSCTCQVYLIVNAFITTILRKV--AVVQVIRILLHSKSNTTDLIISLFLG----QDDLYAVGTKASD 64 (209)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gL~ggKMSsS~p~SaI~Ls----Dt~peeIrkKI~k 64 (209)
.+-|-....|.+|| +++.| +-+-++++.+|.|||.++-+.+|.-. -+ |+.|..-+..
T Consensus 129 ~~~t~~q~~l~~aL---g~~~p~~~h~pll~~~~g~KLSKR~~~~~l~~lr~~G~~-p~ai~~~l~~ 191 (239)
T cd00808 129 LSSTPKQILLYEAL---GWEPPKFAHLPLILNPDGKKLSKRKGDTSISDYREEGYL-PEALLNYLAL 191 (239)
T ss_pred hhChHHHHHHHHHc---CCCCCceEeeccccCCCCCcccCCCCCccHHHHHHCCCC-HHHHHHHHHH
Confidence 34444555677777 44444 44556678899999999998777442 44 6777766654
No 42
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=24.55 E-value=23 Score=35.14 Aligned_cols=95 Identities=12% Similarity=0.008 Sum_probs=58.3
Q ss_pred CccceeeeeehhhhHHHhhhcCccceeeeecccCCCCCCCCCCCCeEEc----cCCChHHHHHHhhcCCC-CCCCCccc-
Q psy14868 2 DLFSCTCQVYLIVNAFITTILRKVAVVQVIRILLHSKSNTTDLIISLFL----GQDDLYAVGTKASDQPL-SGRPRRPD- 75 (209)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~ggKMSsS~p~SaI~L----sDt~peeIrkKI~k~A~-pGgpeTcd- 75 (209)
|..+-|.+..+|.+||- ...|+-+-+-++.+++|+|||..+...+|-- .=. |+.+..=+-.... +|+++..+
T Consensus 205 d~~~~t~~q~~l~~aLG-~~~p~~~H~plv~~~~g~KLSKR~g~~~i~~~r~~G~~-Peai~n~la~LG~s~~~~e~~~~ 282 (513)
T PRK14895 205 DHLTNAARQLAIYQAFG-YAVPSMTHIPLIHGADGAKLSKRHGALGIEAYKDMGYL-PESLCNYLLRLGWSHGDDEIISM 282 (513)
T ss_pred hHhhhHHHHHHHHHHcC-CCCCeEEEEEeEEcCCCCccccccCchhHHHHHHCCCC-HHHHHHHHHHhCCCCCCcCCCCH
Confidence 45566778888899986 4467778888899999999999987765532 223 5555554432211 34444322
Q ss_pred -----hhhhhcc-----cCCHHHHHHHHHHccc
Q psy14868 76 -----LRAYITS-----KITARKADIIIQDYTS 98 (209)
Q Consensus 76 -----VF~YlkF-----~eDDeeLEeI~~~crs 98 (209)
.|.+-+. .=|.++|..+..+|-.
T Consensus 283 ~el~~~F~~~~v~~s~~~FD~~KL~wlN~~yi~ 315 (513)
T PRK14895 283 TQAIDWFNLDSLGKSPSKLDFAKMNSLNAHYLR 315 (513)
T ss_pred HHHHhhCCHHhCcCCcCcCCHHHHHHHHHHHHH
Confidence 2433222 1255677777766654
No 43
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=24.54 E-value=84 Score=28.75 Aligned_cols=33 Identities=9% Similarity=0.207 Sum_probs=24.9
Q ss_pred HHHHHHHHcccCccchHHHHHHHHHHHHHHhHHH
Q psy14868 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHH 121 (209)
Q Consensus 88 eLEeI~~~crsG~IgcGEcKK~LaE~I~e~Laph 121 (209)
.++++....+.|. +||-|+..+.+.|.+.+...
T Consensus 158 t~~el~~~t~agt-~CG~C~~~~~~il~~~~~~~ 190 (290)
T TIGR02000 158 TLEEVTNYTKAGG-GCGSCHEKIEDVLKEVLANK 190 (290)
T ss_pred cHHHHHhhccCCC-CCcchHHHHHHHHHHHHHhc
Confidence 4666665555554 99999999999998887653
No 44
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=24.21 E-value=26 Score=31.56 Aligned_cols=24 Identities=13% Similarity=-0.010 Sum_probs=16.4
Q ss_pred eeeeecccCCCCCCCCCCCCeEEccC
Q psy14868 27 VVQVIRILLHSKSNTTDLIISLFLGQ 52 (209)
Q Consensus 27 ~~~~~~gL~ggKMSsS~p~SaI~LsD 52 (209)
+-.++. |+|+|||.|.- ++|.+.|
T Consensus 265 ~~g~v~-~~g~KmSkS~G-n~v~~~d 288 (314)
T cd00812 265 VQGMVL-LEGEKMSKSKG-NVVTPDE 288 (314)
T ss_pred ecceEe-cCccccCCcCC-CCCCHHH
Confidence 334455 78999999965 6666544
No 45
>PRK10509 bacterioferritin-associated ferredoxin; Provisional
Probab=24.16 E-value=1.2e+02 Score=21.75 Aligned_cols=32 Identities=3% Similarity=-0.092 Sum_probs=22.1
Q ss_pred HHHHHHHcccCccchHHHHHHHHHHHHHHhHHH
Q psy14868 89 ADIIIQDYTSGALLTGELKKILIDTITPIVTHH 121 (209)
Q Consensus 89 LEeI~~~crsG~IgcGEcKK~LaE~I~e~Laph 121 (209)
++++.+.. ..+-.||.|...+-+.|.+.+.+.
T Consensus 26 ~~~l~~~~-~~g~~CG~C~~~i~~il~~~~~~~ 57 (64)
T PRK10509 26 FQQLRKFV-PVGNQCGKCIRAAREVMQDELMQM 57 (64)
T ss_pred HHHHHHhc-CCCCCccchHHHHHHHHHHHHHhc
Confidence 45555433 445699999999888887776543
No 46
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=22.96 E-value=51 Score=30.64 Aligned_cols=27 Identities=11% Similarity=-0.215 Sum_probs=19.5
Q ss_pred ccceeeeecccCCCCCCCCCCCCeEEcc
Q psy14868 24 KVAVVQVIRILLHSKSNTTDLIISLFLG 51 (209)
Q Consensus 24 ~~~~~~~~~gL~ggKMSsS~p~SaI~Ls 51 (209)
+.-+-.++.+++|+|||.|.- +.|.+.
T Consensus 329 ~v~~hg~v~~~~g~KMSKS~G-n~v~~~ 355 (382)
T cd00817 329 EVYLHGLVRDEDGRKMSKSLG-NVIDPL 355 (382)
T ss_pred HeEeeeeEECCCCCCccccCC-CCCCHH
Confidence 445667788889999999965 556543
No 47
>PF10180 DUF2373: Uncharacterised conserved protein (DUF2373); InterPro: IPR019327 This is a conserved family of proteins found from fungi to humans. The function is not known.
Probab=22.41 E-value=14 Score=26.81 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=26.8
Q ss_pred ceeeeeehhhhHHHhhhcCc---cceeeeecccCCC
Q psy14868 5 SCTCQVYLIVNAFITTILRK---VAVVQVIRILLHS 37 (209)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~gL~gg 37 (209)
+=.=|.+||-|+|....+|+ +++...+.||+|+
T Consensus 17 ~K~kQ~wLlk~~fd~~~IP~~~~~~ll~Yl~glkG~ 52 (65)
T PF10180_consen 17 NKNKQNWLLKHAFDEDKIPSEYFPILLEYLKGLKGG 52 (65)
T ss_pred chHHHHHHHHHHhccccCCHHHHHHHHHHHHhCcch
Confidence 33458899999999999997 5778888899984
No 48
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=21.92 E-value=31 Score=35.71 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=31.5
Q ss_pred CCccceeeeeehhhhHHHhhhcCccceeeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCCCCCCccchhhhh
Q psy14868 1 MDLFSCTCQVYLIVNAFITTILRKVAVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYI 80 (209)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGgpeTcdVF~Yl 80 (209)
||+|+|+|+-. --|+...|.|-++--=|.|.+-++. ++.++++-.-.++|| |||.|+
T Consensus 737 ~df~~c~c~d~---ce~~~~~lse~ii~lR~~gk~p~~I---------------sr~l~~~Ygi~aYpg-----Dif~wL 793 (830)
T COG1202 737 MDFLNCTCRDC---CECAEQRLSEKIIELRIEGKDPSQI---------------SRILEKRYGIQAYPG-----DIFTWL 793 (830)
T ss_pred HHHhcCchhhh---HHHHHHHHHHHHHHHHhcCCCHHHH---------------HHHHHHhhCeeecCh-----hHHHHH
Confidence 68999999977 3455555544433222334322111 122333322227787 899998
Q ss_pred c
Q psy14868 81 T 81 (209)
Q Consensus 81 k 81 (209)
.
T Consensus 794 d 794 (830)
T COG1202 794 D 794 (830)
T ss_pred H
Confidence 7
Done!