Query psy14868
Match_columns 209
No_of_seqs 128 out of 495
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 22:52:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hzr_A Tryptophanyl-tRNA synth 100.0 5.1E-29 1.7E-33 228.5 10.4 124 17-141 245-385 (386)
2 3tze_A Tryptophanyl-tRNA synth 100.0 5.2E-29 1.8E-33 229.8 9.4 125 17-142 264-406 (406)
3 3hv0_A Tryptophanyl-tRNA synth 100.0 1.4E-28 4.6E-33 226.0 9.5 124 18-142 242-383 (393)
4 3foc_A Tryptophanyl-tRNA synth 99.9 7.8E-28 2.7E-32 224.9 9.3 123 19-142 310-450 (451)
5 3i05_A Tryptophanyl-tRNA synth 99.9 6.1E-28 2.1E-32 221.8 7.7 124 18-143 246-387 (395)
6 3a04_A Tryptophanyl-tRNA synth 99.9 2.1E-27 7.1E-32 216.1 9.5 115 22-139 238-369 (372)
7 3jxe_A Tryptophanyl-tRNA synth 99.9 2E-27 6.9E-32 218.3 7.9 129 20-150 231-379 (392)
8 1r6u_A Tryptophanyl-tRNA synth 99.9 7.8E-26 2.7E-30 210.3 9.0 125 19-144 279-421 (437)
9 1r6t_A Tryptophanyl-tRNA synth 99.9 9.5E-26 3.3E-30 211.3 9.0 124 19-143 326-467 (477)
10 3tzl_A Tryptophanyl-tRNA synth 99.9 1.5E-25 5.1E-30 200.3 6.8 122 22-146 173-307 (322)
11 2g36_A Tryptophanyl-tRNA synth 99.9 2E-25 6.8E-30 200.8 7.1 122 22-146 185-323 (340)
12 2ip1_A Tryptophanyl-tRNA synth 99.9 6.6E-25 2.2E-29 203.5 9.5 125 18-143 271-413 (432)
13 1yi8_B Tryptophanyl-tRNA synth 99.9 6.8E-24 2.3E-28 191.6 8.4 122 22-146 194-333 (351)
14 2el7_A Tryptophanyl-tRNA synth 99.9 4.2E-24 1.4E-28 191.8 6.9 115 29-146 185-312 (337)
15 3sz3_A Tryptophanyl-tRNA synth 99.9 2.3E-24 7.9E-29 194.6 1.8 114 29-146 190-322 (341)
16 2yy5_A Tryptophanyl-tRNA synth 99.9 2.1E-23 7.3E-28 188.1 3.6 120 22-146 181-327 (348)
17 1i6k_A TRPRS, tryptophanyl-tRN 99.9 3.3E-23 1.1E-27 185.4 4.4 120 22-146 171-309 (328)
18 3prh_A Tryptophanyl-tRNA synth 99.9 3.9E-23 1.3E-27 189.9 4.8 120 22-146 205-343 (388)
19 3n9i_A Tryptophanyl-tRNA synth 99.9 9.1E-23 3.1E-27 184.8 5.7 120 22-146 186-327 (346)
20 2zp1_A Tyrosyl-tRNA synthetase 99.8 6.9E-21 2.4E-25 169.1 7.2 108 17-127 179-308 (314)
21 2cyb_A Tyrosyl-tRNA synthetase 99.8 1.7E-20 5.8E-25 166.3 7.1 99 26-127 202-321 (323)
22 2j5b_A Tyrosyl-tRNA synthetase 99.8 2E-20 6.9E-25 168.5 7.2 118 19-141 209-348 (348)
23 3p0j_A Tyrosyl-tRNA synthetase 99.8 6.4E-20 2.2E-24 178.5 8.2 102 28-131 218-351 (690)
24 1n3l_A Tyrosyl-tRNA synthetase 99.8 5.1E-20 1.7E-24 167.1 6.8 102 23-126 207-329 (372)
25 2cya_A Tyrosyl-tRNA synthetase 99.8 2E-19 7E-24 162.8 9.1 105 21-127 202-347 (364)
26 3vgj_A Tyrosyl-tRNA synthetase 99.8 2.3E-19 7.8E-24 163.5 8.4 101 28-130 235-358 (373)
27 2cyc_A Tyrosyl-tRNA synthetase 99.8 1.6E-19 5.4E-24 164.3 6.6 99 28-128 223-361 (375)
28 2dlc_X Tyrosyl-tRNA synthetase 99.7 1.1E-18 3.9E-23 159.2 7.5 111 24-138 212-352 (394)
29 2yxn_A Tyrosyl-tRNA synthetase 99.6 6.4E-17 2.2E-21 144.2 5.0 91 29-128 226-321 (322)
30 1h3f_A Tyrosyl-tRNA synthetase 99.6 7.4E-16 2.5E-20 142.9 4.8 102 28-144 221-335 (432)
31 2pid_A Tyrosyl-tRNA synthetase 99.6 2.2E-15 7.6E-20 136.4 6.8 93 29-130 245-342 (356)
32 2jan_A Tyrosyl-tRNA synthetase 99.5 2.2E-14 7.5E-19 133.4 7.7 94 29-130 222-320 (432)
33 1y42_X Tyrosyl-tRNA synthetase 99.5 2.5E-14 8.6E-19 131.1 7.7 94 28-130 283-381 (392)
34 1jil_A Tyrrs, tyrosyl-tRNA syn 99.4 1E-13 3.6E-18 127.9 6.9 94 28-130 221-319 (420)
35 2ts1_A Tyrosyl-tRNA synthetase 99.4 2.3E-13 7.7E-18 126.0 6.9 94 28-130 220-318 (419)
36 3p0j_A Tyrosyl-tRNA synthetase 99.4 2.9E-13 9.8E-18 131.9 7.4 110 16-127 535-670 (690)
37 1f1e_A Histone fold protein; a 62.8 1.4 4.7E-05 35.9 -0.3 106 20-137 3-144 (154)
38 4e6k_G BFD, bacterioferritin-a 56.0 7.7 0.00026 27.6 2.7 33 88-121 24-56 (73)
39 2do1_A Nuclear protein HCC-1; 48.6 5.7 0.0002 27.1 1.0 34 88-121 14-47 (55)
40 2kvu_A MKL/myocardin-like prot 41.3 9.6 0.00033 27.8 1.3 33 88-120 30-62 (75)
41 1h1j_S THO1 protein; SAP domai 38.9 13 0.00044 25.0 1.5 33 88-120 9-41 (51)
42 1zrj_A E1B-55KDA-associated pr 37.4 12 0.00039 25.1 1.1 32 88-119 14-45 (50)
43 1nzj_A Hypothetical protein YA 35.7 5.3 0.00018 35.0 -1.1 51 2-53 193-243 (298)
44 2rnn_A E3 SUMO-protein ligase 33.2 16 0.00054 28.5 1.4 35 88-122 41-75 (114)
45 1jjr_A KU70, thyroid autoantig 26.0 8.5 0.00029 31.2 -1.3 47 90-140 67-113 (151)
46 2ja2_A Glutamyl-tRNA synthetas 25.5 16 0.00053 34.5 0.1 62 2-64 217-286 (498)
47 3afh_A Glutamyl-tRNA synthetas 24.8 20 0.00067 33.6 0.7 61 2-64 220-284 (488)
48 3ci9_A Heat shock factor-bindi 22.0 1.2E+02 0.0041 20.1 4.0 29 108-136 5-33 (48)
49 1bh9_B TAFII28; histone fold, 20.7 12 0.00043 27.6 -1.2 24 15-38 10-33 (89)
No 1
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=99.95 E-value=5.1e-29 Score=228.48 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=110.7
Q ss_pred HHhhhcCccce--eeeecccCCC-CCCCCCCCCeEEccCCChHHHHHHhhcCCCCCC-------------CCccchhhhh
Q psy14868 17 FITTILRKVAV--VQVIRILLHS-KSNTTDLIISLFLGQDDLYAVGTKASDQPLSGR-------------PRRPDLRAYI 80 (209)
Q Consensus 17 ~~~~~~~~~~~--~~~~~gL~gg-KMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGg-------------peTcdVF~Yl 80 (209)
-.+-|.++|++ ..+++||+|. |||+|+|+|+|+|+|+ |++|++|||++|+||+ |+.|.||+|+
T Consensus 245 a~r~n~~~p~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D~-p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~ 323 (386)
T 3hzr_A 245 ATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNSILLSDN-AKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLL 323 (386)
T ss_dssp HHHHTCCCCEEEEECCCCCTTCTTCCCCCCTTTSCBTTCC-HHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHH
T ss_pred HHHcCCCCceEeecCeeeCCCCCCccCcCCCCCeeecCCC-HHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHH
Confidence 34556788876 4677899995 9999999999999997 9999999999887665 4547779999
Q ss_pred c-ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCC
Q psy14868 81 T-SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSG 141 (209)
Q Consensus 81 k-F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~ 141 (209)
+ |..+++++++|+++|++|+++||+||+.|++.|+++|+||||||++++++.|++||.+++
T Consensus 324 ~~~~~~~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~~~~~~~~ 385 (386)
T 3hzr_A 324 NIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTK 385 (386)
T ss_dssp HHHCSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHC
T ss_pred HHHcCChhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 9 466788999999999999999999999999999999999999999999999999999876
No 2
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=99.95 E-value=5.2e-29 Score=229.82 Aligned_cols=125 Identities=18% Similarity=0.122 Sum_probs=111.6
Q ss_pred HHhhhcCccce--eeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhh
Q psy14868 17 FITTILRKVAV--VQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAY 79 (209)
Q Consensus 17 ~~~~~~~~~~~--~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Y 79 (209)
-.+-|.|+|++ ..+++||+| +|||+|+|+|+|+|+|+ |++|++|||+||+| |+|+.|++|+|
T Consensus 264 a~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D~-p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~ 342 (406)
T 3tze_A 264 AKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDA-QDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEY 342 (406)
T ss_dssp HHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTCC-HHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHH
T ss_pred HHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCCC-HHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHH
Confidence 34557788876 467889999 79999999999999997 99999999996554 45676888999
Q ss_pred hc-ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCc
Q psy14868 80 IT-SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGR 142 (209)
Q Consensus 80 lk-F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l 142 (209)
++ |.+|++++++|+++|++|+++|||||+.|++.|+++|+||||||++++++.|++||.++++
T Consensus 343 ~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~ 406 (406)
T 3tze_A 343 LKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406 (406)
T ss_dssp HHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCGGGC
T ss_pred HHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcCCC
Confidence 99 5668889999999999999999999999999999999999999999999999999999864
No 3
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=99.95 E-value=1.4e-28 Score=225.96 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=100.9
Q ss_pred HhhhcCccce--eeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCC-------------CCCCCccchhhhh
Q psy14868 18 ITTILRKVAV--VQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPL-------------SGRPRRPDLRAYI 80 (209)
Q Consensus 18 ~~~~~~~~~~--~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~-------------pGgpeTcdVF~Yl 80 (209)
.+-+.|+|++ ..+++||+| +|||+|.|+|+|+|+|+ |++|++|||++|+ +|+|+.|++|+|+
T Consensus 242 ~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D~-p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~ 320 (393)
T 3hv0_A 242 PRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDN-EESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYL 320 (393)
T ss_dssp GGGTCCCCEEEEECCCCC-------------CCCCBTTCC-HHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHH
T ss_pred HHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEeccCC-HHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHH
Confidence 3456777776 467889999 79999999999999997 9999999999655 4567777789999
Q ss_pred c-ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCc
Q psy14868 81 T-SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGR 142 (209)
Q Consensus 81 k-F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l 142 (209)
+ |.++++++++|+++|++|+++|||||+.|++.|+++|+||||||++++++.|++||.++++
T Consensus 321 ~~~~~~~~~~eei~~~y~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~ 383 (393)
T 3hv0_A 321 RFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKSRE 383 (393)
T ss_dssp HHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCCC
T ss_pred HHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCcCHH
Confidence 9 4678889999999999999999999999999999999999999999999999999999986
No 4
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=99.94 E-value=7.8e-28 Score=224.87 Aligned_cols=123 Identities=19% Similarity=0.166 Sum_probs=110.2
Q ss_pred hhhcCccce--eeeecccCCC--CCCCCCCCCeEEccCCChHHHHHHhhcCCC-------------CCCCCccchhhhhc
Q psy14868 19 TTILRKVAV--VQVIRILLHS--KSNTTDLIISLFLGQDDLYAVGTKASDQPL-------------SGRPRRPDLRAYIT 81 (209)
Q Consensus 19 ~~~~~~~~~--~~~~~gL~gg--KMSsS~p~SaI~LsDt~peeIrkKI~k~A~-------------pGgpeTcdVF~Ylk 81 (209)
+-|.|+|++ ..+++||+|. |||+|.|+|+|+|+|+ |++|++|||++|+ +|+|++|++|+|+.
T Consensus 310 rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~-p~~I~kKI~k~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~ 388 (451)
T 3foc_A 310 RMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDT-PAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLE 388 (451)
T ss_dssp TTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCC-HHHHHHHHHHHSCCCSCSSHHHHHTTCCCTTTCHHHHHHH
T ss_pred HhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecCC-HHHHHHHHhhhccCCCCccchhcccCCCCcchhhHHHHHH
Confidence 345677765 4577899997 9999999999999997 9999999999545 35677788899999
Q ss_pred -ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCc
Q psy14868 82 -SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGR 142 (209)
Q Consensus 82 -F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l 142 (209)
|..+++++++|+++|++|+++||+||+.|++.|+++|+|+||||++++++.|++||.++++
T Consensus 389 ~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~l~~d~v~~f~~~~~~ 450 (451)
T 3foc_A 389 VFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDTTMIESFTVKKEL 450 (451)
T ss_dssp HHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCTTC
T ss_pred HHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccC
Confidence 5668889999999999999999999999999999999999999999999999999999876
No 5
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=99.94 E-value=6.1e-28 Score=221.77 Aligned_cols=124 Identities=25% Similarity=0.232 Sum_probs=87.6
Q ss_pred HhhhcCcccee--eeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhh
Q psy14868 18 ITTILRKVAVV--QVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYI 80 (209)
Q Consensus 18 ~~~~~~~~~~~--~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Yl 80 (209)
.+-+.|+|++. .|++||+| +|||+| |+|+|+|+|+ |++|++|||++|+| |+|++|++|+|+
T Consensus 246 ~r~~~~~p~~l~~~~l~gLdG~~~KMSKS-~~~~I~L~D~-p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~ 323 (395)
T 3i05_A 246 PRLGYLKPAVIHSKFFPGLSGPKGKMSSS-SGTAVLLTDT-EKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWL 323 (395)
T ss_dssp HHHTCCCCEEEEECCCCCC--------------CCBTTCC-HHHHHHHHC----------------------CCHHHHHH
T ss_pred HHcCCCCceeeccccccCCCCCcccCCCC-CCCcccCCCC-HHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHH
Confidence 35567788764 57889999 799999 9999999997 99999999996554 456668889999
Q ss_pred c-ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCcc
Q psy14868 81 T-SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRP 143 (209)
Q Consensus 81 k-F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~ 143 (209)
. |.++++++++|+++|++|+++||+||+.|++.|+++|+||||||++++++.|++||.++++.
T Consensus 324 ~~~~~~~~~~eei~~~y~~G~l~~g~lK~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~~ 387 (395)
T 3i05_A 324 SFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMG 387 (395)
T ss_dssp HHHCCCSHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCT
T ss_pred HHHcCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhChhccc
Confidence 9 46678899999999999999999999999999999999999999999999999999999874
No 6
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=99.94 E-value=2.1e-27 Score=216.08 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=100.9
Q ss_pred cCccce--eeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhhc--ccC
Q psy14868 22 LRKVAV--VQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYIT--SKI 84 (209)
Q Consensus 22 ~~~~~~--~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Ylk--F~e 84 (209)
+++|+. .+|++||+|.|||+|+|+|+|+|+|+ |++|++|||+ |+| |+|+.|+||+|+. +.+
T Consensus 238 ~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l~D~-p~~i~kKI~k-a~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~ 315 (372)
T 3a04_A 238 LERPASTYHKLQPGLDGRKMSSSRPDSTIFLTDP-PEVARNKLFR-ALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMP 315 (372)
T ss_dssp CCCCEEEEECCCBCTTSSBCCTTSGGGSCBTTCC-HHHHHHHHHT-CCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCC
T ss_pred ccChhhhhhcccCCCCCCccCCCCCCcccccCCC-HHHHHHHHhc-CccCCCCCcccccccCCCCchhhHHHHHHHccCC
Confidence 556654 47889999999999999999999997 9999999999 675 5577788998754 478
Q ss_pred CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcC
Q psy14868 85 TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSS 139 (209)
Q Consensus 85 DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~ 139 (209)
|++++++|+++|++|+++|||||+.|++.|+++|+||||||+++.+ .+++++..
T Consensus 316 d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer~e~~~~-~~~kile~ 369 (372)
T 3a04_A 316 DDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQSRLEKAKT-IAWKLVEP 369 (372)
T ss_dssp SHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTSCCC
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhcc
Confidence 9999999999999999999999999999999999999999999886 46666553
No 7
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=99.94 E-value=2e-27 Score=218.28 Aligned_cols=129 Identities=18% Similarity=0.179 Sum_probs=108.5
Q ss_pred hhcCccc--eeeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhhc-
Q psy14868 20 TILRKVA--VVQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYIT- 81 (209)
Q Consensus 20 ~~~~~~~--~~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Ylk- 81 (209)
-|.++|+ ...+++||+| +|||+|+|+|+|+|+|+ |++|++|||+||+| |+|+.|.+|+|+.
T Consensus 231 ~n~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D~-p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~ 309 (392)
T 3jxe_A 231 LGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDS-PEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEI 309 (392)
T ss_dssp GTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTCC-HHHHHHHHHTCC--------------------CHHHHHHHH
T ss_pred cCCCCCeeeecccccCCCCCccccccCCCCCeeeCCCC-HHHHHHHHHhhccCCCCcccccccccCCCCchhHHHHHHHH
Confidence 3445554 3578899999 59999999999999997 99999999996664 4567677899999
Q ss_pred cc-CCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCcc-ccccCce
Q psy14868 82 SK-ITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRP-DRYTDQI 150 (209)
Q Consensus 82 F~-eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~-a~~~~~~ 150 (209)
|. .+++++++|+++|++|+++||+||+.|++.|+++|+|+||||++++ +.|++||..|++. ++|++.|
T Consensus 310 ~~~~~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~-~~v~~~l~~g~~~~~~~~~~~ 379 (392)
T 3jxe_A 310 FFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE-KLVEKFKYTGKLAQEMWNEAI 379 (392)
T ss_dssp TTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSHHHHHTTSHHHHHHHTTSC
T ss_pred HHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcccHHHHhccC
Confidence 53 6888999999999999999999999999999999999999999999 7899999999984 7787755
No 8
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=99.92 E-value=7.8e-26 Score=210.34 Aligned_cols=125 Identities=31% Similarity=0.329 Sum_probs=112.5
Q ss_pred hhhcCccce--eeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhhc
Q psy14868 19 TTILRKVAV--VQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYIT 81 (209)
Q Consensus 19 ~~~~~~~~~--~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Ylk 81 (209)
+-+.++|++ ..+++||+| +|||+|.|+|+|+|+|+ |++|++||+++|+| |+|+.|+||.|++
T Consensus 279 r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D~-p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~ 357 (437)
T 1r6u_A 279 RIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDT-AKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLT 357 (437)
T ss_dssp GGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTTCC-HHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHH
T ss_pred HhCCCCceEeecccccCCCCCccccCCCCCCCeeeccCC-HHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHH
Confidence 345677764 467889999 89999999999999997 99999999998876 5577788899999
Q ss_pred -ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCccc
Q psy14868 82 -SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPD 144 (209)
Q Consensus 82 -F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~a 144 (209)
|..+++++++|+++|++|+++||+||+.|++.|+++|.++||||++++++.|++||.++++..
T Consensus 358 ~ft~~~~eieel~~~~~~G~~~~~~~K~~LAe~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~ 421 (437)
T 1r6u_A 358 FFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSF 421 (437)
T ss_dssp HHCCCHHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTSCCCCSC
T ss_pred HHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCc
Confidence 566888999999999999999999999999999999999999999999988999999998853
No 9
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=99.92 E-value=9.5e-26 Score=211.30 Aligned_cols=124 Identities=31% Similarity=0.343 Sum_probs=111.3
Q ss_pred hhhcCccce--eeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhhc
Q psy14868 19 TTILRKVAV--VQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYIT 81 (209)
Q Consensus 19 ~~~~~~~~~--~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Ylk 81 (209)
+-+.++|+. ..+++||+| +|||+|.++|+|+|+|+ |++|++||+++|++ |+|+.|+||.|++
T Consensus 326 r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~-p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~ 404 (477)
T 1r6t_A 326 RIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDT-AKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLT 404 (477)
T ss_dssp GGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCC-HHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHH
T ss_pred HhCCCCceeeecccccCCCCCccccCCCCCCCceeecCC-HHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHH
Confidence 345666664 378889999 89999999999999997 99999999998776 4566688899999
Q ss_pred -ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCcc
Q psy14868 82 -SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRP 143 (209)
Q Consensus 82 -F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~ 143 (209)
|..+++++++|+++|++|+++||+||+.|++.|+++|.||||||++++++.|++||..+++.
T Consensus 405 ~ft~~~~eieel~~~~~~G~~~~~~~K~~Lae~i~~~l~pirer~~~~~~~~v~~~~~~~~~~ 467 (477)
T 1r6t_A 405 FFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLA 467 (477)
T ss_dssp HHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC
T ss_pred HHcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 56688899999999999999999999999999999999999999999998899999998875
No 10
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=99.91 E-value=1.5e-25 Score=200.33 Aligned_cols=122 Identities=12% Similarity=0.032 Sum_probs=108.7
Q ss_pred cCccce---eeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCC--------CCCCccchhhhhcccCCHHHHH
Q psy14868 22 LRKVAV---VQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLS--------GRPRRPDLRAYITSKITARKAD 90 (209)
Q Consensus 22 ~~~~~~---~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p--------GgpeTcdVF~YlkF~eDDeeLE 90 (209)
.|++.+ ..+++||+|+|||+|+|+ +|+|+|+ |++|++||++ |+| |+|+.|+||+|+++..++++++
T Consensus 173 ~P~~~~~~~~~~l~~l~G~KMSKS~~n-~I~L~d~-p~~i~~KI~~-a~td~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 249 (322)
T 3tzl_A 173 LPEARVNEEVAVVVGTDGAKMSKSYQN-TIDIFSS-EKTLKKQISS-IVTDSTALEDPKDHENCNIFKIAKLFLDESGQK 249 (322)
T ss_dssp CCEEECCCSSCCCBCTTSSBCCGGGTC-CCBSSCC-HHHHHHHHHT-CCCCCCCTTSCCCGGGCHHHHHHGGGCCHHHHH
T ss_pred CchhhhccccccccCCCCCcCCCCCCC-ceecCCC-HHHHHHHHHh-ccCCCccccCCCCCcchhHHHHHHHhCChhHHH
Confidence 355555 578999999999999986 8999997 9999999999 764 6788899999999655778999
Q ss_pred HHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868 91 IIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY 146 (209)
Q Consensus 91 eI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~ 146 (209)
+++++|++|+++||+||+.|++.|+++|+|+||||++++++. |++.+..|.++|+-
T Consensus 250 ~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~~il~~G~~~a~~ 307 (322)
T 3tzl_A 250 ELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKEILDFGATKARK 307 (322)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999754 99999999887653
No 11
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=99.91 E-value=2e-25 Score=200.82 Aligned_cols=122 Identities=11% Similarity=0.079 Sum_probs=108.2
Q ss_pred cCccce----eeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCC----------CCCCccchhhhhc-ccCCH
Q psy14868 22 LRKVAV----VQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLS----------GRPRRPDLRAYIT-SKITA 86 (209)
Q Consensus 22 ~~~~~~----~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p----------GgpeTcdVF~Ylk-F~eDD 86 (209)
+++|.+ ..+++||+|.|||+|+++ +|+|+|+ |+++++||++ |++ |+|++|+||+|++ |.+++
T Consensus 185 f~~P~~~~~~~~~l~gldG~KMSKS~~n-~I~L~ds-p~~i~~Ki~~-a~td~~~~~~~~~~~p~~~~v~~~~~~f~~~~ 261 (340)
T 2g36_A 185 FPEPEAILSRVPKLPGTDGRKMSKSYGN-IINLEIS-EKELEQTILR-MMTDPARVRRSDPGNPENCPVWKYHQAFDISE 261 (340)
T ss_dssp CCCCEEEECCSCCCCCTTSSCCCGGGTC-CCBTTCC-HHHHHHHHHT-CCCCTTCSSTTSCCCGGGCHHHHHHHHTTCCH
T ss_pred cCCchhhhccccccCCCCccccCCCCCC-eEeeeCC-HHHHHHHHHh-CCCCcccccccCCCCCchhHHHHHHHHHCCCH
Confidence 455653 489999999999999985 7999997 9999999999 564 6788899999999 55567
Q ss_pred HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868 87 RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY 146 (209)
Q Consensus 87 eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~ 146 (209)
+++++|+++|++|+++|++||+.|++.|+++|+|+||||++++++. |++++..|.++|+.
T Consensus 262 ~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~~il~~g~~~a~~ 323 (340)
T 2g36_A 262 EESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPHYVDDVIMEGTKKARE 323 (340)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999864 99999999887654
No 12
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=99.91 E-value=6.6e-25 Score=203.49 Aligned_cols=125 Identities=23% Similarity=0.233 Sum_probs=105.7
Q ss_pred HhhhcCccce--eeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhh
Q psy14868 18 ITTILRKVAV--VQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYI 80 (209)
Q Consensus 18 ~~~~~~~~~~--~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Yl 80 (209)
.+-|+++|++ ..+++||+| +|||+|.++++|+|+|+ |++|++||+++|++ |+|+.|+||.|+
T Consensus 271 ~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d~-p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l 349 (432)
T 2ip1_A 271 DKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDT-PKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYL 349 (432)
T ss_dssp HHHTSCCCEEEEECCCCCTTC--------CGGGCCBTTCC-HHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHH
T ss_pred HHhCCCCceeeccccccCCCCCccccCCCCCCCeEeccCC-HHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHH
Confidence 3445677765 458889999 89999999999999997 99999999997776 456778889999
Q ss_pred c-ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCcc
Q psy14868 81 T-SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRP 143 (209)
Q Consensus 81 k-F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~ 143 (209)
+ |..+++++++|+++|++|+++||+||+.|++.|+++|.++||||+++++++|++||..++..
T Consensus 350 ~~f~~~~~eieel~~~~~~G~~~~~~~K~~La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~ 413 (432)
T 2ip1_A 350 SFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLV 413 (432)
T ss_dssp HHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCCC
T ss_pred HHHCCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHH
Confidence 9 56688899999999999999999999999999999999999999999998899999988763
No 13
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=99.89 E-value=6.8e-24 Score=191.55 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=108.2
Q ss_pred cCccce----eeeecccCCC-CCCCCCCCCeEEccCCChHHHHHHhhcCCCC----------CCCCccchhhhhc-ccCC
Q psy14868 22 LRKVAV----VQVIRILLHS-KSNTTDLIISLFLGQDDLYAVGTKASDQPLS----------GRPRRPDLRAYIT-SKIT 85 (209)
Q Consensus 22 ~~~~~~----~~~~~gL~gg-KMSsS~p~SaI~LsDt~peeIrkKI~k~A~p----------GgpeTcdVF~Ylk-F~eD 85 (209)
+++|+. ..+++||+|+ |||+|+++ +|+|+|+ |+++++||++ |++ |+++.|++|.|++ |..+
T Consensus 194 f~~P~~~~~~~~~l~~ldG~~KMSKS~~n-~I~L~d~-p~~i~~Ki~~-a~td~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (351)
T 1yi8_B 194 LAEPQAQLSRVPRLPGLDGQAKMSKSLGN-AIALGDS-ADEVARKVMG-MYTDPGHLRASDPGRVEGNPVFTFLDAFDPD 270 (351)
T ss_dssp SCCCEEEECSSCSCCCTTSSSCCCTTTTC-CCBTTCC-HHHHHHHHHT-CCCCTTCCSTTSCCCCTTCTTHHHHHHHCSC
T ss_pred cCCCeeeeecCccccCCCCccccCCCCCC-eecCCCC-HHHHHHHHHh-cCCCcccccccCCCCCccchHHHHHHHHcCC
Confidence 455543 4689999998 99999998 8999997 9999999999 665 5688899999999 5667
Q ss_pred HHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868 86 ARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY 146 (209)
Q Consensus 86 DeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~ 146 (209)
++++++|+++|++|+++||+||+.|++.|+++|+|+||||++++++. |++++..|.++|+-
T Consensus 271 ~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~l~~il~~G~~~a~~ 333 (351)
T 1yi8_B 271 PARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEGTARGRE 333 (351)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999854 99999999887654
No 14
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=99.89 E-value=4.2e-24 Score=191.79 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=100.3
Q ss_pred eeecccCC-CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC----------CCCCccchhhhhcccCCHHHHHHHHHHcc
Q psy14868 29 QVIRILLH-SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS----------GRPRRPDLRAYITSKITARKADIIIQDYT 97 (209)
Q Consensus 29 ~~~~gL~g-gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p----------GgpeTcdVF~YlkF~eDDeeLEeI~~~cr 97 (209)
.+++||+| +|||+|.++ +|+|+|+ |+++++||++ +++ |+|++|+||+|++++.+++++++|+++|+
T Consensus 185 p~l~gldG~~KMSKS~~n-~I~L~d~-p~~i~~Ki~~-a~td~~~~~~~~~~~p~~~~v~~~~~~~t~~~~i~~l~~~~~ 261 (337)
T 2el7_A 185 PRVPGIDGKAKMSKSLGN-TIGLLEP-EESIWQKIQH-LPDDPQRIRLSDPGDPERTILFTYLSYFAPKDLVEALKEEYR 261 (337)
T ss_dssp CCCBCTTSSSBCCTTTTC-CCBSSSC-HHHHHHHHHT-CCCCC-------------CHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ccccCCCCccccCCCCCC-eeeCcCC-HHHHHHHHHh-CCCCCccccccCCCCCchhhHHHHHHHcCChHHHHHHHHHHH
Confidence 58999999 999999998 8999997 9999999999 554 66888999999996456679999999999
Q ss_pred cCccchHHHHHHHHHHHHHHhHHHHHHHhhchHH--HhhhhhcCCCccccc
Q psy14868 98 SGALLTGELKKILIDTITPIVTHHQEAMKGVTEE--HGKLTSSSSGRPDRY 146 (209)
Q Consensus 98 sG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd--~V~eFm~~g~l~a~~ 146 (209)
+|+++||+||+.|++.|+++|.|+||||++++++ .|++++..|.++|+-
T Consensus 262 ~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~il~~G~~~a~~ 312 (337)
T 2el7_A 262 KAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDALLEGAKRARA 312 (337)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999986 499999999876553
No 15
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=99.88 E-value=2.3e-24 Score=194.64 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=98.6
Q ss_pred eeecccC-C-CCCCCCCC--CCeEEccCCChHHHHHHhhcCCCCC-------------CCCccchhhhhcccCCHHHHHH
Q psy14868 29 QVIRILL-H-SKSNTTDL--IISLFLGQDDLYAVGTKASDQPLSG-------------RPRRPDLRAYITSKITARKADI 91 (209)
Q Consensus 29 ~~~~gL~-g-gKMSsS~p--~SaI~LsDt~peeIrkKI~k~A~pG-------------gpeTcdVF~YlkF~eDDeeLEe 91 (209)
.+++||+ | +|||+|+| +|+|+|+|+ |++|++|||+ |+|+ +|++|++|+|+.+. +++++++
T Consensus 190 ~~l~gL~dg~~KMSKS~~~~~~~I~L~D~-p~~i~kKI~~-a~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~-~~~~~e~ 266 (341)
T 3sz3_A 190 ARVMSLQDATKKMSKSDDNRKNVITLLED-PKSIIKKINK-AQTDAETPPRIAYDVENKAGIANLMGLYSAA-TGKTFAE 266 (341)
T ss_dssp CCCEETTEEEEECCTTCSCGGGCCBTTCC-HHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHHHHHHHHHHH-HCCCHHH
T ss_pred ccccCCCCCCCccCCCCCCCCCeeecCCC-HHHHHHHhhh-ccCCCCCCcccccCCCCCcchhHHHHHHHHc-CCccHHH
Confidence 5788996 5 59999999 799999997 9999999999 6643 34457789999954 3358999
Q ss_pred HHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY 146 (209)
Q Consensus 92 I~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~ 146 (209)
|+++|+ |+++||+||+.|++.|+++|+|+||||+++.++. |++.+..|.++|+-
T Consensus 267 i~~~~~-g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~l~~il~~G~~kA~~ 322 (341)
T 3sz3_A 267 IEAQYA-GVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDGAEKASA 322 (341)
T ss_dssp HHHHTT-TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 999999 7799999999999999999999999999998754 99999999887654
No 16
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=99.87 E-value=2.1e-23 Score=188.12 Aligned_cols=120 Identities=11% Similarity=0.103 Sum_probs=102.8
Q ss_pred cCccce---eeeecccCC--CCCCCCCCCC--eEEccCCChHHHHHHhhcCCCCC-----------CCCccchhhhhccc
Q psy14868 22 LRKVAV---VQVIRILLH--SKSNTTDLII--SLFLGQDDLYAVGTKASDQPLSG-----------RPRRPDLRAYITSK 83 (209)
Q Consensus 22 ~~~~~~---~~~~~gL~g--gKMSsS~p~S--aI~LsDt~peeIrkKI~k~A~pG-----------gpeTcdVF~YlkF~ 83 (209)
+|++.+ ..+++||+| +|||+|+|++ +|+|+|+ |++|++|||+ |+|+ +|+.|++|+|+.+.
T Consensus 181 ~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~-~~~i~~KI~~-a~td~~~~~~~~~~~~p~v~~~~~~~~~~ 258 (348)
T 2yy5_A 181 LPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDP-KEVVVKKIRQ-ATTDSFNKIRFASKTQPGVTNMLTILKAL 258 (348)
T ss_dssp CCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCC-HHHHHHHHHT-CCCCSSCCCSCCTTTCHHHHHHHHHHHHH
T ss_pred CCeeecccccccccCCCCcchhcCCCCCCCCceEeecCC-HHHHHHHHHh-CCCCCccccccCCCCCCchhhHHHHHHhC
Confidence 466665 578999999 8999999996 9999997 9999999999 6643 36667889999965
Q ss_pred CCHHHHH---------HHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCccccc
Q psy14868 84 ITARKAD---------IIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRY 146 (209)
Q Consensus 84 eDDeeLE---------eI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~a~~ 146 (209)
+ +++++ +|+++|+ | ++||+||+.|++.|+++|+|+||||+++.+..|+++|..|.++|+-
T Consensus 259 ~-~~~~~~~~~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~d~~~~~~l~~G~~~a~~ 327 (348)
T 2yy5_A 259 L-KEPVNQSLTNQLGNDLEAYFS-T-KSYLDLKNALTEATVNLLVNIQRKREQISREQVFNCLQAGKNQAQA 327 (348)
T ss_dssp T-TSGGGHHHHHHHCSCHHHHGG-G-CCHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred C-hHhhhhhcccchHHHHHHHHc-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 3 45788 9999999 6 9999999999999999999999999999554499999999876543
No 17
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=99.87 E-value=3.3e-23 Score=185.43 Aligned_cols=120 Identities=14% Similarity=0.138 Sum_probs=102.8
Q ss_pred cCccce---eeeecccCC--CCCCCCCCCCe--EEccCCChHHHHHHhhcCCCCC-----------CCCccchhhhhccc
Q psy14868 22 LRKVAV---VQVIRILLH--SKSNTTDLIIS--LFLGQDDLYAVGTKASDQPLSG-----------RPRRPDLRAYITSK 83 (209)
Q Consensus 22 ~~~~~~---~~~~~gL~g--gKMSsS~p~Sa--I~LsDt~peeIrkKI~k~A~pG-----------gpeTcdVF~YlkF~ 83 (209)
+|++.+ ..+++||+| +|||+|+++++ |+|+|+ |++|++|||+ |+|+ +|++|++|+|+.+.
T Consensus 171 ~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~-~~~i~~KI~~-a~td~~~~~~~~~~~~p~v~~~~~~~~~~ 248 (328)
T 1i6k_A 171 IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDD-AKTIEKKIKS-AVTDSEGTIRYDKEAKPGISNLLNIYSTL 248 (328)
T ss_dssp CCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCC-HHHHHHHHHH-CCCCSSCCCCCBTTTBHHHHHHHHHHHHH
T ss_pred CCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCC-HHHHHHHHHh-cCCCCccccccCCCCCcchhhHHHHHHHC
Confidence 455544 488999999 89999999977 999997 9999999999 6653 36667889999965
Q ss_pred CCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH-hhhhhcCCCccccc
Q psy14868 84 ITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH-GKLTSSSSGRPDRY 146 (209)
Q Consensus 84 eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~-V~eFm~~g~l~a~~ 146 (209)
+++++++|+++|+ | ++||+||+.|++.|+++|+|+||||+++.++. |++++..|.++|+-
T Consensus 249 -~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~il~~g~~~a~~ 309 (328)
T 1i6k_A 249 -SGQSIEELERQYE-G-KGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANR 309 (328)
T ss_dssp -HCCCHHHHHHHTT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHc-C-CCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Confidence 3458899999999 6 99999999999999999999999999998754 99999998876553
No 18
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=99.87 E-value=3.9e-23 Score=189.88 Aligned_cols=120 Identities=14% Similarity=0.122 Sum_probs=100.0
Q ss_pred cCccce---eeeecccCC--CCCCCCCC--CCeEEccCCChHHHHHHhhcCCCC-----------CCCCccchhhhhccc
Q psy14868 22 LRKVAV---VQVIRILLH--SKSNTTDL--IISLFLGQDDLYAVGTKASDQPLS-----------GRPRRPDLRAYITSK 83 (209)
Q Consensus 22 ~~~~~~---~~~~~gL~g--gKMSsS~p--~SaI~LsDt~peeIrkKI~k~A~p-----------GgpeTcdVF~YlkF~ 83 (209)
+|++.+ ..++.||++ +|||+|+| +|+|+|+|+ |++|++|||+ |+| |+|+.|++|+|+.+.
T Consensus 205 ~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~-p~~I~kKI~k-a~TD~~~~~~~~~~~~p~v~~l~~i~~~~ 282 (388)
T 3prh_A 205 IPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDE-PKQLEKKIKS-AVTDSEGIVKFDKENKPGVSNLLTIYSIL 282 (388)
T ss_dssp CCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCC-HHHHHHHHHT-CCCCSSCCCCCCTTTCHHHHHHHHHHHHH
T ss_pred cchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCC-HHHHHHHHhh-ccCCCCCcccCCCCCCCCcchHHHHHHhc
Confidence 455544 356789965 59999998 899999997 9999999999 664 334557789999954
Q ss_pred CCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHH-HhhhhhcCCCccccc
Q psy14868 84 ITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE-HGKLTSSSSGRPDRY 146 (209)
Q Consensus 84 eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd-~V~eFm~~g~l~a~~ 146 (209)
+++++++|+++|+ |+ +||+||+.|++.|+++|+|+||||+++.++ .|++.+..|.++|+-
T Consensus 283 -~~~~~eel~~~y~-g~-~~g~lK~~lae~l~~~l~pirer~~~~~~~~~l~~il~~Ga~kA~~ 343 (388)
T 3prh_A 283 -GNTTIEELEAKYE-GK-GYGEFKGDLAEVVVNALKPIQDRYYELIESEELDRILDEGAERANR 343 (388)
T ss_dssp -HTCCHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHc-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 3357899999999 76 999999999999999999999999999754 499999999887654
No 19
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=99.86 E-value=9.1e-23 Score=184.82 Aligned_cols=120 Identities=15% Similarity=0.137 Sum_probs=98.2
Q ss_pred cCcccee---eeeccc-CC-CCCCCCCCC--CeEEccCCChHHHHHHhhcCCCCCC-------------CCccchhhhhc
Q psy14868 22 LRKVAVV---QVIRIL-LH-SKSNTTDLI--ISLFLGQDDLYAVGTKASDQPLSGR-------------PRRPDLRAYIT 81 (209)
Q Consensus 22 ~~~~~~~---~~~~gL-~g-gKMSsS~p~--SaI~LsDt~peeIrkKI~k~A~pGg-------------peTcdVF~Ylk 81 (209)
+|++-+. .+++|| +| +|||+|+|+ |+|+|+|+ |++|++|||+ |+|+. |+++++|+||.
T Consensus 186 ~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~-p~~i~kKI~k-A~Td~~~~~~~~~~~~~~p~v~~l~~~~~ 263 (346)
T 3n9i_A 186 IPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLED-PKSVVKKIKR-AMTDSDEPALIRYDVEKKAGVSNLLDILS 263 (346)
T ss_dssp CCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSC-HHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHHHHHHHHH
T ss_pred ccchhccCCcccCccCCCCccccCCCCCCCCceecCCCC-HHHHHHHHHh-CcCCCCCCccccCCCCCCCChhHHHHHHH
Confidence 4444443 567899 45 399999997 99999997 9999999999 66533 23356688888
Q ss_pred ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868 82 SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY 146 (209)
Q Consensus 82 F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~ 146 (209)
+. +++++++|+++|++| +||+||+.|++.|+++|+|+||||++++++. |++.+..|.++|+-
T Consensus 264 ~~-~~~~~eel~~~y~~~--~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~l~~il~~G~~kA~~ 327 (346)
T 3n9i_A 264 GV-TGQSIPELEAQFTGQ--MYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARA 327 (346)
T ss_dssp HH-HCCCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hc-CCccHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 44 335789999999877 5999999999999999999999999999754 99999999887654
No 20
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=99.82 E-value=6.9e-21 Score=169.12 Aligned_cols=108 Identities=11% Similarity=0.055 Sum_probs=90.6
Q ss_pred HHhhhcC-ccce--eeeecccCC-CCCCCCCCCCeEEccCCChHHHHHHhhcCCCCCC--CCccchhhhhcc-c------
Q psy14868 17 FITTILR-KVAV--VQVIRILLH-SKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGR--PRRPDLRAYITS-K------ 83 (209)
Q Consensus 17 ~~~~~~~-~~~~--~~~~~gL~g-gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGg--peTcdVF~YlkF-~------ 83 (209)
+.|.+.+ +|++ ..+++||+| +|||+| |+|+|+|+|+ |++|++|||+ |+|++ ++.|++|+|++| .
T Consensus 179 l~R~i~~~~~~~~~~~~l~~l~G~~KMSKS-~~~~I~L~d~-~~~i~~KI~~-a~td~~~~~~~~~~~~~~~~~~~~~~i 255 (314)
T 2zp1_A 179 LARELLPKKVVCIHNPVLTGLDGEGKMSSS-KGNFIAVDDS-PEEIRAKIKK-AYCPAGVVEGNPIMEIAKYFLEYPLTI 255 (314)
T ss_dssp HHHHHSSSCCEEEEECCCBCTTSSSBCCTT-TTCSCBTTCC-HHHHHHHHHH-SCCCTTCCTTCHHHHHHHHHCCSSEEE
T ss_pred HHHHhcCCCcEEeeccccccCCcccccCCC-CcceecCCCC-HHHHHHHHHh-CCCCCCCCCCCcHHHHHHHHhcCCcce
Confidence 4455554 3332 367889999 799999 8999999997 9999999999 88644 455888999995 4
Q ss_pred ---------CCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhh
Q psy14868 84 ---------ITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKG 127 (209)
Q Consensus 84 ---------eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~e 127 (209)
.+.+++++|+++|++|+++||+||+.|++.|+++|+|+|+||+.
T Consensus 256 ~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l~p~r~~~~~ 308 (314)
T 2zp1_A 256 KRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKILEPIRKRLLE 308 (314)
T ss_dssp CCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eehhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 13458999999999999999999999999999999999999975
No 21
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.81 E-value=1.7e-20 Score=166.33 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=86.1
Q ss_pred ceeeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCC--CCCCccchhhhhc-cc-C-----------------
Q psy14868 26 AVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLS--GRPRRPDLRAYIT-SK-I----------------- 84 (209)
Q Consensus 26 ~~~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p--GgpeTcdVF~Ylk-F~-e----------------- 84 (209)
....+++||+|+|||+| ++|+|+|+|+ |+++++||++ |+| |.++.|++|+|++ |. +
T Consensus 202 l~~pll~~l~G~KMSKS-~~n~I~l~d~-p~~i~~Ki~~-a~td~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~ 278 (323)
T 2cyb_A 202 LHTPILVGLDGQKMSSS-KGNYISVRDP-PEEVERKIRK-AYCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDV 278 (323)
T ss_dssp EEECCCBCTTSSBCCTT-TTCSCBTTCC-HHHHHHHHHT-SCCCTTCCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCE
T ss_pred EecCcccCCCCCcccCC-cCceeCCCCC-HHHHHHHHHh-cCCCCCCCCcChHHHHHHHHhccccCceeEechhhcCCCC
Confidence 44578999999999999 8999999997 9999999999 775 4455588899999 43 1
Q ss_pred CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhh
Q psy14868 85 TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKG 127 (209)
Q Consensus 85 DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~e 127 (209)
+.+++++|+++|++|+++||+||+.|++.|+++|+|+||||++
T Consensus 279 ~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~~l~pir~~~~~ 321 (323)
T 2cyb_A 279 EYASFEELAEDFKSGQLHPLDLKIAVAKYLNMLLEDARKRLGV 321 (323)
T ss_dssp EESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2348899999999999999999999999999999999999975
No 22
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=99.81 E-value=2e-20 Score=168.55 Aligned_cols=118 Identities=18% Similarity=0.129 Sum_probs=92.5
Q ss_pred hhhcCccce--eeeecccC-C-CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC--CCCCccchhhhhcc-c--------
Q psy14868 19 TTILRKVAV--VQVIRILL-H-SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS--GRPRRPDLRAYITS-K-------- 83 (209)
Q Consensus 19 ~~~~~~~~~--~~~~~gL~-g-gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p--GgpeTcdVF~YlkF-~-------- 83 (209)
+-|.+.|++ ..+++||+ | +|||+|.|+++|+|+|+ |++|++|||+ |+| |.++ ++++.|+++ .
T Consensus 209 r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d~-p~~i~kKI~k-a~td~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (348)
T 2j5b_A 209 DRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT-EQEVSEKISR-AYCTDETFD-NPIFEYIKYLLLRWFGTLN 285 (348)
T ss_dssp HTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTCC-HHHHHHHHHH-SCCCSSSTT-CHHHHHHHHTHHHHHSCEE
T ss_pred HhCCCCceeecCccccCCCCcccccccCCCCCeEeecCC-HHHHHHHHhc-ccCCCCCCC-CchHhHHHHhhhhhhcccc
Confidence 334444543 36788995 4 59999999999999997 9999999999 775 5566 667888763 1
Q ss_pred ---CCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhh----chHHHhhhhhcCCC
Q psy14868 84 ---ITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKG----VTEEHGKLTSSSSG 141 (209)
Q Consensus 84 ---eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~e----ltdd~V~eFm~~g~ 141 (209)
.+.+++++|+++|+ ++++|+||+.|++.|+++|+|+|+|+++ .+.+.|++||..++
T Consensus 286 i~~~~~~~~~el~~~~~--~~~~~~~K~~la~~l~~~l~pir~~~~~~~~~~~~~~v~~~~~~~~ 348 (348)
T 2j5b_A 286 LCGKIYTDIESIQEDFS--SMNKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQQPSK 348 (348)
T ss_dssp ETTEEESSHHHHHHHHT--TSCHHHHHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHTCC---
T ss_pred cccCCcchHHHHHHHHc--ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCCC
Confidence 23457999999999 7999999999999999999999999764 34456899987653
No 23
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=99.79 E-value=6.4e-20 Score=178.48 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=88.7
Q ss_pred eeeeccc-CCC-CCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CC----CCccchhhhhcc--cC--
Q psy14868 28 VQVIRIL-LHS-KSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GR----PRRPDLRAYITS--KI-- 84 (209)
Q Consensus 28 ~~~~~gL-~gg-KMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------Gg----peTcdVF~YlkF--~e-- 84 (209)
..+++|| +|. |||+|.|+|+|+|+|+ |++|++|||+ |+| |+ ++.|++|+|+++ .+
T Consensus 218 ~~~l~gL~dG~~KMSKS~~~~~I~L~D~-p~~i~kKI~~-A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~ 295 (690)
T 3p0j_A 218 HHMLAGLKQGQAKMSKSDPDSAIFMEDT-EEDVARKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARP 295 (690)
T ss_dssp BCCCCCSSTTCSSCBTTBGGGSCBTTCC-HHHHHHHHHT-SCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTST
T ss_pred cCeeecCCCCCcCCCCCCCCCeeeccCC-HHHHHHHHHh-CcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccc
Confidence 4688999 674 9999999999999997 9999999999 654 33 366788999994 22
Q ss_pred ---------CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHH
Q psy14868 85 ---------TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131 (209)
Q Consensus 85 ---------DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd 131 (209)
+++++++|+++|++|+++||+||+.|++.|+++|+|+||||++..+.
T Consensus 296 ~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae~i~~~L~Pirer~~~~~~~ 351 (690)
T 3p0j_A 296 GAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEA 351 (690)
T ss_dssp TCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 45689999999999999999999999999999999999999987654
No 24
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.79 E-value=5.1e-20 Score=167.05 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=81.6
Q ss_pred CccceeeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCCCC--CCccchhhhhc---------cc--------
Q psy14868 23 RKVAVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGR--PRRPDLRAYIT---------SK-------- 83 (209)
Q Consensus 23 ~~~~~~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGg--peTcdVF~Ylk---------F~-------- 83 (209)
|...-..+++||+|+|||+|+++++|+|+|+ |+++++|||+ |+|+. .+.++|+.|++ |.
T Consensus 207 p~~l~~pll~gldG~KMSKS~~ns~I~L~d~-p~~i~kKi~~-A~td~~~~~d~~v~~~lk~~l~~~~~~f~~er~~~~g 284 (372)
T 1n3l_A 207 RVHLMNPMVPGLTGSKMSSSEEESKIDLLDR-KEDVKKKLKK-AFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWG 284 (372)
T ss_dssp CEEEEECCCCCSSCC-------CCSCBTTCC-HHHHHHHHHT-CCCCTTCCSSCHHHHHHHHTTGGGTTCEEECCCGGGT
T ss_pred CEEEecCccCCCCcccccCCCCCCeEeccCC-HHHHHHHHHH-ccCCCCCCCcccHHHHHHHhhhhhhcceeeccccccc
Confidence 3334467889999999999999999999997 9999999999 88755 45577788877 42
Q ss_pred --CCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHh
Q psy14868 84 --ITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMK 126 (209)
Q Consensus 84 --eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~ 126 (209)
.+.+++++++++|++|+++||+||+.|++.|+++|.|+|+||+
T Consensus 285 ~~~~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 285 GNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN 329 (372)
T ss_dssp CCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 1456899999999999999999999999999999999999999
No 25
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=99.78 E-value=2e-19 Score=162.84 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=88.6
Q ss_pred hcCccce--eeeecccC-----------------CCCCCCCCCCCeEEccCCChHHHHHHhhcCCCCC--CCCccchhhh
Q psy14868 21 ILRKVAV--VQVIRILL-----------------HSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSG--RPRRPDLRAY 79 (209)
Q Consensus 21 ~~~~~~~--~~~~~gL~-----------------ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pG--gpeTcdVF~Y 79 (209)
|.++|.. ..+++||+ |+|||+|+|+++|+|+|+ |++|++||++ |+|+ +++.++||+|
T Consensus 202 ~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d~-p~~i~~Ki~~-a~td~~~~~~~~v~~~ 279 (364)
T 2cya_A 202 GRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDS-DDDIRRKIRK-AYCPAKQVQGNPVLEI 279 (364)
T ss_dssp TCCCCEEEEECCCBCSSCC----------------CBCCSSSGGGSCBTTCC-HHHHHHHHHT-SCCCTTCCTTCHHHHH
T ss_pred CCCCceeeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccCC-HHHHHHHHHh-CcCCCCCCCCCcHHHH
Confidence 3445443 46788999 689999999999999998 9999999999 8864 4555888999
Q ss_pred hc-cc-C------------------CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhh
Q psy14868 80 IT-SK-I------------------TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKG 127 (209)
Q Consensus 80 lk-F~-e------------------DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~e 127 (209)
++ |. + +.+++++++++|.+|++++++||+.|++.|+++|+|+|+||++
T Consensus 280 ~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~ 347 (364)
T 2cya_A 280 ARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG 347 (364)
T ss_dssp HHHTTTTSTTCCEECC--------CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccCceeeeccccccCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98 32 2 1237899999999999999999999999999999999999994
No 26
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=99.78 E-value=2.3e-19 Score=163.46 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=83.4
Q ss_pred eeeeccc-CCC-CCCCCCCCCeEEccCCChHHHHHHhhcCCCCC--CCCccch--------hhhhc-c-cC---------
Q psy14868 28 VQVIRIL-LHS-KSNTTDLIISLFLGQDDLYAVGTKASDQPLSG--RPRRPDL--------RAYIT-S-KI--------- 84 (209)
Q Consensus 28 ~~~~~gL-~gg-KMSsS~p~SaI~LsDt~peeIrkKI~k~A~pG--gpeTcdV--------F~Ylk-F-~e--------- 84 (209)
..+++|| +|. |||+|+|+|+|+|+|+ |++|++|||+ |+|+ .++.+++ |.|+. | .+
T Consensus 235 ~p~l~gL~dG~~KMSKS~~~~~I~L~D~-p~~i~~KI~k-A~td~~~~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~ 312 (373)
T 3vgj_A 235 HGMLPGLLEGQEKMSKSDENSAIFMDDS-ESDVNRKIKK-AYCPPNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDK 312 (373)
T ss_dssp BCCCCCSSTTCCSCCSSSTTCCCBTTCC-HHHHHHHHHH-SCCCTTCCTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCE
T ss_pred CCeeecCCCCCCCCcCCCCCCeeecCCC-HHHHHHHHHh-CcCCCCCCCCCcchhhhhhhhhhhhhhhcccccccccCCc
Confidence 5678899 774 9999999999999997 9999999999 7753 3344443 45554 3 11
Q ss_pred CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868 85 TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTE 130 (209)
Q Consensus 85 DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltd 130 (209)
..+++++++++|++|++++|+||+.|++.|+++|+|+|+|+++..+
T Consensus 313 ~~~~~eel~~~~~~g~l~~~dlK~~lae~i~~~l~Pire~~~~~~~ 358 (373)
T 3vgj_A 313 TYYTLQELEHDYVNGFIHPLDLKDNVAMYINKLLQPVRDHFQNNIE 358 (373)
T ss_dssp EECCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CcccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 1247899999999999999999999999999999999999998654
No 27
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=99.78 E-value=1.6e-19 Score=164.32 Aligned_cols=99 Identities=10% Similarity=0.123 Sum_probs=87.6
Q ss_pred eeeecccCC------------------CCCCCCCCCCeEEccCCChHHHHHHhhcCCCCC--CCCccchhhhhc-c-cCC
Q psy14868 28 VQVIRILLH------------------SKSNTTDLIISLFLGQDDLYAVGTKASDQPLSG--RPRRPDLRAYIT-S-KIT 85 (209)
Q Consensus 28 ~~~~~gL~g------------------gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pG--gpeTcdVF~Ylk-F-~eD 85 (209)
..+++||+| +|||+|.|+++|+|+|+ |++|++||++ |+|+ +++.++|++|++ | +.+
T Consensus 223 ~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~-p~~i~~KI~~-A~t~~~~~~~~~v~~~~~~~~f~~ 300 (375)
T 2cyc_A 223 HHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDS-PEEIRQKLRK-AFCPAREVRYNPVLDWVEYIIFRE 300 (375)
T ss_dssp ECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCC-HHHHHHHHHH-SCCCTTCCSSCHHHHHHHHTTTSS
T ss_pred cccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCCC-HHHHHHHHHH-hcCCCCCCCCChHHHHHHHHhcCC
Confidence 468899999 79999999999999997 9999999999 8854 456688899998 4 233
Q ss_pred ------------------HHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhc
Q psy14868 86 ------------------ARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGV 128 (209)
Q Consensus 86 ------------------DeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~el 128 (209)
.+++++++++|++|++++++||+.|++.|+++|+|+|+||++-
T Consensus 301 ~~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~ 361 (375)
T 2cyc_A 301 EPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKH 361 (375)
T ss_dssp SSCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred CCcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3579999999999999999999999999999999999999965
No 28
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.1e-18 Score=159.24 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=81.4
Q ss_pred ccceeeeecccC-CCCCCCCCCCCeEEccCCChHHHHHHhhcCCCCCC--CCccchhhhhcc------------------
Q psy14868 24 KVAVVQVIRILL-HSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGR--PRRPDLRAYITS------------------ 82 (209)
Q Consensus 24 ~~~~~~~~~gL~-ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGg--peTcdVF~YlkF------------------ 82 (209)
......+++||+ |+|||+|+|+++|+|+|+ |++|++|||+ |+|+. ++.++|+.|+++
T Consensus 212 ~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~-p~~i~kKI~k-a~Td~~~~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~ 289 (394)
T 2dlc_X 212 AHLMNPMVPGLAQGGKMSASDPNSKIDLLEE-PKQVKKKINS-AFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFF 289 (394)
T ss_dssp EEEEECCCCCCC----------CCSCBTTCC-HHHHHHHHHH-SCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTTCCCEE
T ss_pred EEEecccccCCCCCCcCCCCCCCCEEeccCC-HHHHHHHHHH-hcCCCCCCCcchHHHHHHhhhcchhhhcccCCCceEE
Confidence 334467899999 999999999999999997 9999999999 77544 455778888542
Q ss_pred -cC--------CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhc
Q psy14868 83 -KI--------TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSS 138 (209)
Q Consensus 83 -~e--------DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~ 138 (209)
.. +.+++++|+++|++|+++|++||+.|++.|+++|.|+|+|+++-.+ +++.+.
T Consensus 290 i~~~~~~~~~~~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~~~~~--~~~~~~ 352 (394)
T 2dlc_X 290 IDRPEKFGGPITYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNKE--FQEASE 352 (394)
T ss_dssp ECCCGGGSCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHH--HHHHHH
T ss_pred EeccccccCcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHCCHH--HHHHHh
Confidence 00 2247899999999999999999999999999999999999985432 444444
No 29
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=99.65 E-value=6.4e-17 Score=144.25 Aligned_cols=91 Identities=10% Similarity=0.100 Sum_probs=81.8
Q ss_pred eeecccCCCCCCCCCCCCeEEccC---CChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccch
Q psy14868 29 QVIRILLHSKSNTTDLIISLFLGQ---DDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALLT 103 (209)
Q Consensus 29 ~~~~gL~ggKMSsS~p~SaI~LsD---t~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Igc 103 (209)
.+++||+|+|||+|.|+ +|+|+| + |+++++||++ + +.++|+.|++ | ..+++++++|+++|++|. +|
T Consensus 226 pll~gldG~KMSKS~~n-~I~L~d~~ts-p~~~~~ki~~-~-----~d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~-~~ 296 (322)
T 2yxn_A 226 PLITKADGTKFGKTEGG-AVWLDPKKTS-PYKFYQFWIN-T-----ADADVYRFLKFFTFMSIEEINALEEEDKNSG-KA 296 (322)
T ss_dssp CCCBCTTSCBTTEETTE-ECBSSTTTSC-HHHHHHHHHT-C-----CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHS-SC
T ss_pred CccCCCCcccccCCCCC-eeeccCCCCC-HHHHHHHHhC-C-----CcccHHHHHHHHHcCCHHHHHHHHHHHHcCC-CH
Confidence 56789999999999996 999999 9 9999999998 3 3477899999 5 347889999999999998 99
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhc
Q psy14868 104 GELKKILIDTITPIVTHHQEAMKGV 128 (209)
Q Consensus 104 GEcKK~LaE~I~e~LaphQERR~el 128 (209)
|+||+.|++.|+++|.+++++|+..
T Consensus 297 ~~~K~~La~~i~~~l~~~~~~~~a~ 321 (322)
T 2yxn_A 297 PRAQYVLAEQVTRLVHGEEGLQAAK 321 (322)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhh
Confidence 9999999999999999999999753
No 30
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=99.58 E-value=7.4e-16 Score=142.94 Aligned_cols=102 Identities=10% Similarity=-0.042 Sum_probs=87.8
Q ss_pred eeeecccCCC-CCCCCCCCCeEEccCCChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccchH
Q psy14868 28 VQVIRILLHS-KSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALLTG 104 (209)
Q Consensus 28 ~~~~~gL~gg-KMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~IgcG 104 (209)
..+++||+|. |||+|.++ +|+|+|+ |+++++||++ + .+++|+.|++ | ..+.+++++++++ +++
T Consensus 221 ~pll~gldG~~KMSKS~~n-~I~L~ds-p~~i~~Ki~~-~-----~d~~v~~~l~~ft~~~~eei~~~~~~------~~~ 286 (432)
T 1h3f_A 221 MPLLVGLDGREKMSKSLDN-YIGLTEP-PEAMFKKLMR-V-----PDPLLPSYFRLLTDLEEEEIEALLKA------GPV 286 (432)
T ss_dssp ECCCBCTTSSSBCCGGGTC-CCBTTSC-HHHHHHHHHT-S-----CGGGHHHHHHHHCCCCHHHHHHHHHH------CHH
T ss_pred cccccCCCCccccCcCCCC-eeCCCCC-HHHHHHHHhC-C-----CccHHHHHHHHcCCCCHHHHHHHHhh------ChH
Confidence 4678899996 99999976 8999997 9999999998 3 3467899999 5 4466788887765 899
Q ss_pred HHHHHHHHHHHHHhH----HHHHHHhhchHHH--hhhhhcC----CCccc
Q psy14868 105 ELKKILIDTITPIVT----HHQEAMKGVTEEH--GKLTSSS----SGRPD 144 (209)
Q Consensus 105 EcKK~LaE~I~e~La----phQERR~eltdd~--V~eFm~~----g~l~a 144 (209)
+||+.|++.|++++. ||||||+++++ . |++++.. |.+.+
T Consensus 287 ~~K~~LA~~i~~~l~~~~~pirerr~~~~~-~~~v~~il~~~~~~g~~~a 335 (432)
T 1h3f_A 287 PAHRVLARLLTAAYALPQIPPRIDRAFYES-LGYAWEAFGRDKEAGPEEV 335 (432)
T ss_dssp HHHHHHHHHHHHHHHSSSCCSCCSHHHHHH-TTCCGGGTTCCTTCSCHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHhhc-hHHHHHHHhhccccCHHHH
Confidence 999999999999999 99999999998 5 8999988 66643
No 31
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=99.57 E-value=2.2e-15 Score=136.36 Aligned_cols=93 Identities=14% Similarity=0.091 Sum_probs=69.9
Q ss_pred eeecccCCCCCCCCCCCCeEEccC---CChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccch
Q psy14868 29 QVIRILLHSKSNTTDLIISLFLGQ---DDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALLT 103 (209)
Q Consensus 29 ~~~~gL~ggKMSsS~p~SaI~LsD---t~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Igc 103 (209)
.+++||+|+|||+| +.++|+|+| + |+++++||+++. + ++|+.|++ | ..+++++++|+++|++|. ++
T Consensus 245 pll~~ldG~KMSKS-~~naI~L~d~~ts-p~~i~~ki~~~~-----D-~~v~~~l~~~t~~~~~~i~~l~~~~~~g~-~~ 315 (356)
T 2pid_A 245 PLITSTTGAKLGKS-AGNAVWLNRDKTS-PFELYQFFVRQP-----D-DSVERYLKLFTFLPLPEIDHIMQLHVKEP-ER 315 (356)
T ss_dssp CCCC--------------CCBSSTTTSC-HHHHHHHHHTCC-----H-HHHHHHHHHHCCCCHHHHHHHHHHHHHCG-GG
T ss_pred ccccCCCcccccCC-CCCeeeccCCCCC-HHHHHHHHHcCC-----c-hhHHHHHHHHHcCCchHHHHHHHHHhcCC-CH
Confidence 67889999999999 577999999 8 999999999832 2 56788888 5 447789999999999985 99
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868 104 GELKKILIDTITPIVTHHQEAMKGVTE 130 (209)
Q Consensus 104 GEcKK~LaE~I~e~LaphQERR~eltd 130 (209)
|+||+.|++.|+++|..++++|+....
T Consensus 316 ~~~K~~La~~v~~~l~g~~~~~~a~~~ 342 (356)
T 2pid_A 316 RGPQKRLAAEVTKLVHGREGLDSAKRC 342 (356)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 999999999999999999999987664
No 32
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=99.50 E-value=2.2e-14 Score=133.36 Aligned_cols=94 Identities=14% Similarity=0.059 Sum_probs=83.7
Q ss_pred eeecccCCCCCCCCCCCCeEEccC---CChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccch
Q psy14868 29 QVIRILLHSKSNTTDLIISLFLGQ---DDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALLT 103 (209)
Q Consensus 29 ~~~~gL~ggKMSsS~p~SaI~LsD---t~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Igc 103 (209)
.+++||+|.|||+|.++++|+|+| + |+++++||++++ | ++|+.|++ | ..+++++++|+++|++|. ++
T Consensus 222 plL~~ldG~KMSKS~~nsaI~L~d~~ts-p~~i~qki~~~~-----D-~~v~~~l~l~t~~~~~ei~~l~~~~~~g~-~~ 293 (432)
T 2jan_A 222 PLVTAADGTKFGKSTGGGSLWLDPQMTS-PYAWYQYFVNTA-----D-ADVIRYLRWFTFLSADELAELEQATAQRP-QQ 293 (432)
T ss_dssp CCCBCTTSCBTTBCSSSCBCBSSTTTSC-HHHHHHHHHTCC-----H-HHHHHHHHHHSCCCHHHHHHHHHHHHHCG-GG
T ss_pred ccccCCCcCcCCCCCCCCeEEccCCCCC-HHHHHHHHhcCC-----c-hhHHHHHHHHHcCChHHHHHHHHHHhhcc-CH
Confidence 578899999999999999999999 9 999999999832 2 56888888 4 457789999999999998 99
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868 104 GELKKILIDTITPIVTHHQEAMKGVTE 130 (209)
Q Consensus 104 GEcKK~LaE~I~e~LaphQERR~eltd 130 (209)
+++|+.|++.|++++...++.++....
T Consensus 294 ~~~K~~LA~~v~~~~hg~~~~~~a~~~ 320 (432)
T 2jan_A 294 RAAQRRLASELTVLVHGEAATAAVEHA 320 (432)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 999999999999999999998876654
No 33
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=99.50 E-value=2.5e-14 Score=131.14 Aligned_cols=94 Identities=9% Similarity=0.082 Sum_probs=82.4
Q ss_pred eeeecccCCCCCCCCCCCCeEEccC---CChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccc
Q psy14868 28 VQVIRILLHSKSNTTDLIISLFLGQ---DDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALL 102 (209)
Q Consensus 28 ~~~~~gL~ggKMSsS~p~SaI~LsD---t~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Ig 102 (209)
..+++||+|.|||+|.+ ++|+|+| + |+++.+||++++ + ++|+.|++ | ..+++++++|+++|++|. +
T Consensus 283 ~pll~~ldG~KMSKS~~-naI~L~d~~ts-p~~i~qki~~~~-----D-~~v~~~l~~ft~l~~~ei~~l~~~~~~g~-~ 353 (392)
T 1y42_X 283 VPLLTDSSGAKFGKSAG-NAIWLDPYQTS-VFDFYGYFVRRS-----D-QEVENLLKLFTFMPISEITKTMEEHIKDP-S 353 (392)
T ss_dssp CCCCBCTTCCBTTBCSS-SBCBSSTTTSC-HHHHHHHHHTCC-----T-TTHHHHHHHHCCCCHHHHHHHHHHHHHCG-G
T ss_pred cccCcCCchhhccCCCC-CeeeccCCCCC-HHHHHHHHHcCC-----c-hhHHHHHHHHHhCChhHHHHHHHHHhcCC-C
Confidence 46889999999999975 6999999 9 999999999842 2 57788888 4 447789999999999998 9
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868 103 TGELKKILIDTITPIVTHHQEAMKGVTE 130 (209)
Q Consensus 103 cGEcKK~LaE~I~e~LaphQERR~eltd 130 (209)
++++|+.|++.|+++|..+++.++....
T Consensus 354 ~~~~K~~LA~~v~~~lhg~~~~~~a~~~ 381 (392)
T 1y42_X 354 KRVAQHTLAREVVTLVHGKQEASAAEDQ 381 (392)
T ss_dssp GCHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999999999999987654
No 34
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=99.43 E-value=1e-13 Score=127.93 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=82.1
Q ss_pred eeeecccCCCCCCCCCCCCeEEccC---CChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccc
Q psy14868 28 VQVIRILLHSKSNTTDLIISLFLGQ---DDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALL 102 (209)
Q Consensus 28 ~~~~~gL~ggKMSsS~p~SaI~LsD---t~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Ig 102 (209)
..+++||+|.|||+|.+ ++|+|+| + |+++++||+++. -++|+.|++ | ..+++++++|+++|++|. +
T Consensus 221 ~pll~~ldG~KMSKS~~-naI~L~d~~ts-p~~i~~ki~~~~------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~-~ 291 (420)
T 1jil_A 221 IPLVTKSDGKKFGKSES-GAVWLDAEKTS-PYEFYQFWINQS------DEDVIKFLKYFTFLGKEEIDRLEQSKNEAP-H 291 (420)
T ss_dssp ECCCBCTTSCBTTBCSS-SBCBSSTTTSC-HHHHHHHHHTCC------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCG-G
T ss_pred cccccCCccccccCCCC-CeEecCCCCCC-HHHHHHHHhcCC------chhHHHHHHHHHcCCHHHHHHHHHHHhcCC-C
Confidence 46788999999999996 5999999 9 999999999832 266788888 5 447789999999999998 9
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868 103 TGELKKILIDTITPIVTHHQEAMKGVTE 130 (209)
Q Consensus 103 cGEcKK~LaE~I~e~LaphQERR~eltd 130 (209)
++++|+.|++.|++++...++.++....
T Consensus 292 ~~~~K~~La~~v~~~~hg~~~~~~a~~~ 319 (420)
T 1jil_A 292 LREAQKTLAEEVTKFIHGEDALNDAIRI 319 (420)
T ss_dssp GCHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999999999998876554
No 35
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=99.40 E-value=2.3e-13 Score=125.98 Aligned_cols=94 Identities=12% Similarity=0.158 Sum_probs=81.7
Q ss_pred eeeecccCCCCCCCCCCCCeEEccC---CChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccc
Q psy14868 28 VQVIRILLHSKSNTTDLIISLFLGQ---DDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALL 102 (209)
Q Consensus 28 ~~~~~gL~ggKMSsS~p~SaI~LsD---t~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Ig 102 (209)
..+++||+|.|||+|.+ ++|+|+| + |+++++||+++. -++|+.|++ | ..+++++++|+++|++|. +
T Consensus 220 ~pll~~ldG~KMSKS~~-naI~L~d~~ts-p~~i~qki~~~~------D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~-~ 290 (419)
T 2ts1_A 220 IPLVTKADGTKFGKTES-GTIWLDKEKTS-PYEFYQFWINTD------DRDVIRYLKYFTFLSKEEIEALEQELREAP-E 290 (419)
T ss_dssp ECCCCCTTSCCTTCCSS-CCCBSSTTTSC-HHHHHHHHHTCC------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCT-T
T ss_pred cccccCCCcccccCCCC-CeEecCCCCCC-HHHHHHHHhcCC------chhHHHHHHHHHcCCHHHHHHHHHHHHccC-C
Confidence 46788999999999975 6999999 9 999999999832 266788888 4 447789999999999998 9
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868 103 TGELKKILIDTITPIVTHHQEAMKGVTE 130 (209)
Q Consensus 103 cGEcKK~LaE~I~e~LaphQERR~eltd 130 (209)
++++|+.|++.|++++...++.++....
T Consensus 291 ~~~~K~~LA~~v~~~~hg~~~~~~a~~~ 318 (419)
T 2ts1_A 291 KRAAQKTLAEEVTKLVHGEEALRQAIRI 318 (419)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999999999998876553
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=99.40 E-value=2.9e-13 Score=131.92 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=82.2
Q ss_pred HHHhhhcCc---ccee--eeecccCCC-CC-CCCCCCCeEEccCCChHHHHHHhhcCCCC-CCCCccchhhhhccc-C--
Q psy14868 16 AFITTILRK---VAVV--QVIRILLHS-KS-NTTDLIISLFLGQDDLYAVGTKASDQPLS-GRPRRPDLRAYITSK-I-- 84 (209)
Q Consensus 16 ~~~~~~~~~---~~~~--~~~~gL~gg-KM-SsS~p~SaI~LsDt~peeIrkKI~k~A~p-GgpeTcdVF~YlkF~-e-- 84 (209)
-+-|..+++ |+.. .+++||+|. || |+++|+|+|||+|+ |++|++||++ ||+ .+.+.++|++|.++. .
T Consensus 535 ~LaRd~~~~~~~~~~~~~~~~P~L~gp~~~~~~~s~~~~I~l~D~-~~~i~~KI~k-A~c~p~ve~np~l~~~~~~~~~~ 612 (690)
T 3p0j_A 535 AFAREYTKERIDCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDN-DMDIRRKIKK-AYSAPNEEANPVISVAQHLLAQH 612 (690)
T ss_dssp HHHHHHTTTCSEEEECCCCSSCCSSCCCC-------CCSCBTTCC-HHHHHHHHHH-SCCCTTCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccccccccccCCCcccccCCCCCCCeeeccCC-HHHHHHHHHH-hcCCCCCCCChHHHHHHHHhccC
Confidence 344555544 3333 588999854 55 46789999999998 9999999999 873 235557777777731 0
Q ss_pred ---------------CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhh
Q psy14868 85 ---------------TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKG 127 (209)
Q Consensus 85 ---------------DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~e 127 (209)
.-++.++++++|.+|+|..+|+|+.|++.|+++|+|+|||.+.
T Consensus 613 ~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~Re~~~~ 670 (690)
T 3p0j_A 613 GALSIERGEANGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNG 670 (690)
T ss_dssp SCEEECCCTTTTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEechhhhCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0247899999999999999999999999999999999999983
No 37
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=62.79 E-value=1.4 Score=35.91 Aligned_cols=106 Identities=9% Similarity=-0.001 Sum_probs=67.6
Q ss_pred hhcCccceeeeec-ccCCCCCCCCCCCCeEEccCCChHHHHHHhhcC-----------CCCCCCCc---cch-hhhhc--
Q psy14868 20 TILRKVAVVQVIR-ILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQ-----------PLSGRPRR---PDL-RAYIT-- 81 (209)
Q Consensus 20 ~~~~~~~~~~~~~-gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~-----------A~pGgpeT---cdV-F~Ylk-- 81 (209)
++||+++|.|+|+ +|...+.|. |. .+++++-+..+ +.-.++.| -|| +....
T Consensus 3 ~~LP~a~V~Riik~~lg~~rVS~----------dA-~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg 71 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGERRLSQ----------DA-KDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLM 71 (154)
T ss_dssp -CCCHHHHHHHHHTTSTTCEECH----------HH-HHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHT
T ss_pred ccCCccHHHHHHHhcCCccchhH----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcc
Confidence 5799999999998 664444443 22 45555555544 11356666 455 44433
Q ss_pred c--cC--CHH-----HHHHHHHHcccCccchHHHHHHHHHHHHHHhHH---------HHHHHhhchHHHhhhhh
Q psy14868 82 S--KI--TAR-----KADIIIQDYTSGALLTGELKKILIDTITPIVTH---------HQEAMKGVTEEHGKLTS 137 (209)
Q Consensus 82 F--~e--DDe-----eLEeI~~~crsG~IgcGEcKK~LaE~I~e~Lap---------hQERR~eltdd~V~eFm 137 (209)
| .. ||- .+.+|-.+- .+.--+.+.|..|.+.+.+|+.. ++++|+.++.++|..-+
T Consensus 72 ~~~v~d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al 144 (154)
T 1f1e_A 72 VEGVEDYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAI 144 (154)
T ss_dssp CTTSTTCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred cccCCccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 4 11 211 255654444 55678899999999999999987 67888888887765443
No 38
>4e6k_G BFD, bacterioferritin-associated ferredoxin; protein complex, iron storage, iron binding, iron mobilizati ferritin, iron homeostasis; HET: HEM; 2.00A {Pseudomonas aeruginosa}
Probab=55.97 E-value=7.7 Score=27.55 Aligned_cols=33 Identities=6% Similarity=0.074 Sum_probs=25.6
Q ss_pred HHHHHHHHcccCccchHHHHHHHHHHHHHHhHHH
Q psy14868 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHH 121 (209)
Q Consensus 88 eLEeI~~~crsG~IgcGEcKK~LaE~I~e~Laph 121 (209)
.+++|++..+.|. +||-|+..+.+.|.+.+.+.
T Consensus 24 t~~~v~~~t~aGt-~CG~C~~~i~~il~~~~~~~ 56 (73)
T 4e6k_G 24 SYREVREATGVGT-QCGKCASLAKQVVRETLNDL 56 (73)
T ss_dssp SHHHHHHHHCTTS-SSCTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhCCCC-CCCchHHHHHHHHHHHHhhc
Confidence 4677887777775 89999999888888766554
No 39
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=48.60 E-value=5.7 Score=27.14 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=28.0
Q ss_pred HHHHHHHHcccCccchHHHHHHHHHHHHHHhHHH
Q psy14868 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHH 121 (209)
Q Consensus 88 eLEeI~~~crsG~IgcGEcKK~LaE~I~e~Laph 121 (209)
.++++++.|+..++-+.--|+.|++.|.+++...
T Consensus 14 kV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 14 KLAELKQECLARGLETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp CHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 5677788888888887667999999999998764
No 40
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=41.31 E-value=9.6 Score=27.78 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=27.3
Q ss_pred HHHHHHHHcccCccchHHHHHHHHHHHHHHhHH
Q psy14868 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTH 120 (209)
Q Consensus 88 eLEeI~~~crsG~IgcGEcKK~LaE~I~e~Lap 120 (209)
.+.++++.|+..++-+.--|+.|++.|+++++.
T Consensus 30 kVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 30 KVAELKQELKLRSLPVSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp CHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 567788888888888877799999999988654
No 41
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=38.94 E-value=13 Score=24.97 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=26.9
Q ss_pred HHHHHHHHcccCccchHHHHHHHHHHHHHHhHH
Q psy14868 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTH 120 (209)
Q Consensus 88 eLEeI~~~crsG~IgcGEcKK~LaE~I~e~Lap 120 (209)
.+.++++.|+..++-+.--|+.|++.|.++..+
T Consensus 9 tV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~ 41 (51)
T 1h1j_S 9 TVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEE 41 (51)
T ss_dssp CHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHh
Confidence 467788888888888777799999999887654
No 42
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=37.43 E-value=12 Score=25.13 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=27.0
Q ss_pred HHHHHHHHcccCccchHHHHHHHHHHHHHHhH
Q psy14868 88 KADIIIQDYTSGALLTGELKKILIDTITPIVT 119 (209)
Q Consensus 88 eLEeI~~~crsG~IgcGEcKK~LaE~I~e~La 119 (209)
.+.++++.|+.-++-+.--|+.|++.|++++.
T Consensus 14 kV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~ 45 (50)
T 1zrj_A 14 KVNELREELQRRGLDTRGLKAELAERLQAALS 45 (50)
T ss_dssp CHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 56778888888888887789999999988764
No 43
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=35.65 E-value=5.3 Score=34.97 Aligned_cols=51 Identities=14% Similarity=0.006 Sum_probs=21.4
Q ss_pred CccceeeeeehhhhHHHhhhcCccceeeeecccCCCCCCCCCCCCeEEccCC
Q psy14868 2 DLFSCTCQVYLIVNAFITTILRKVAVVQVIRILLHSKSNTTDLIISLFLGQD 53 (209)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~ggKMSsS~p~SaI~LsDt 53 (209)
|+.+.|-+-..+..||-- ..|+-+=+-++.+.+|.|||.++-+.+|--.+.
T Consensus 193 D~l~~t~~q~~l~~alG~-~~p~~~H~pll~~~~g~KLSKR~g~~~v~~~~~ 243 (298)
T 1nzj_A 193 DLIEPTVRQISLYQLFGW-KVPDYIHLPLALNPQGAKLSKQNHAPALPKGDP 243 (298)
T ss_dssp GGHHHHHHHHHHHHHHTC-CCCEEEEECBCCC-------------CCCSSCC
T ss_pred cccccHHHHHHHHHHcCC-CCCeEEEeeeeECCCCCcccccCCccChhcCCc
Confidence 344445444556666632 235556667777999999999998887765554
No 44
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=33.23 E-value=16 Score=28.55 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=29.3
Q ss_pred HHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHH
Q psy14868 88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQ 122 (209)
Q Consensus 88 eLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQ 122 (209)
.++++++-|++-++-..--|+.|++.|.++|+.+.
T Consensus 41 tVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~ 75 (114)
T 2rnn_A 41 KVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL 75 (114)
T ss_dssp CHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc
Confidence 46677788888888877779999999999998765
No 45
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=26.03 E-value=8.5 Score=31.22 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=22.0
Q ss_pred HHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCC
Q psy14868 90 DIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSS 140 (209)
Q Consensus 90 EeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g 140 (209)
.++++-|++-++-+.-=|+.|++.|.+++.... ++.++.+.+-...+
T Consensus 67 ~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~Kv----e~s~eei~~~~~~g 113 (151)
T 1jjr_A 67 PMLKEACRAYGLKSGLKKQELLEALTKHFQDKV----EYSEEELKTHISKG 113 (151)
T ss_dssp HHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC--------------------
T ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHhhhc----cccHHHHHHHHhcC
Confidence 334444444456666669999999999987764 56666666544433
No 46
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=25.46 E-value=16 Score=34.46 Aligned_cols=62 Identities=18% Similarity=-0.001 Sum_probs=38.2
Q ss_pred CccceeeeeehhhhHHHhh--hc--CccceeeeecccCCCCCCCCCCCCeEEc-c---CCChHHHHHHhhc
Q psy14868 2 DLFSCTCQVYLIVNAFITT--IL--RKVAVVQVIRILLHSKSNTTDLIISLFL-G---QDDLYAVGTKASD 64 (209)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~gL~ggKMSsS~p~SaI~L-s---Dt~peeIrkKI~k 64 (209)
|+.+-|-....|.+||... .. |+-+-+-++.+.+|.|||.++.+.+|-- - =. |+.++.=+..
T Consensus 217 D~~~~t~~q~~l~~aL~~~g~g~~~P~~~h~plil~~~g~KLSKR~g~~~l~~~r~~G~~-peAl~~~l~~ 286 (498)
T 2ja2_A 217 DLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFI-PEGLLNYLAL 286 (498)
T ss_dssp GGGGGHHHHHHHHHHHHHTTSCCCCCEEEEECCEECSSSSBCCTTSGGGBHHHHHHHTCC-HHHHHHHHHT
T ss_pred hhhhccHHHHHHHHHHHhhcCCCCCCeEEEeeeeECCCCCcccccCCcccHHHHHhCCCC-HHHHHHHHHH
Confidence 3445555555677888542 23 4445555788999999999998764421 1 13 5666555543
No 47
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=24.84 E-value=20 Score=33.60 Aligned_cols=61 Identities=15% Similarity=-0.111 Sum_probs=38.0
Q ss_pred CccceeeeeehhhhHHHhhhcCccceeeeecccCCCCCCCCCCCCeEEc-c---CCChHHHHHHhhc
Q psy14868 2 DLFSCTCQVYLIVNAFITTILRKVAVVQVIRILLHSKSNTTDLIISLFL-G---QDDLYAVGTKASD 64 (209)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~ggKMSsS~p~SaI~L-s---Dt~peeIrkKI~k 64 (209)
|+.+.|-...+|.+||--. .|+-+=+-++.+.+|.|||.++.+.+|-= - =. |+.+..-+..
T Consensus 220 D~l~~tp~q~~l~~aLG~~-~P~f~H~pli~~~~g~KLSKR~g~~~l~~~r~~G~~-peal~n~l~~ 284 (488)
T 3afh_A 220 DHLSNTPKQLMIYEAFGWE-APVFMHIPLILGSDRTPLSKRHGATSVEHFRREGIL-SRALMNYLAL 284 (488)
T ss_dssp GGGGGHHHHHHHHHHHTCC-CCEEEEECCEECTTSSBCCTTTSCCBHHHHHHHTCC-HHHHHHHHHH
T ss_pred hhhhCHHHHHHHHHHcCCC-CCeEEEEeeeeCCCCCcccCcCCcccHHHHHHCCCC-HHHHHHHHHH
Confidence 3445555555677787432 25555555788999999999998754321 1 14 6666665554
No 48
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=22.02 E-value=1.2e+02 Score=20.10 Aligned_cols=29 Identities=7% Similarity=0.171 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhHHHHHHHhhchHHHhhhh
Q psy14868 108 KILIDTITPIVTHHQEAMKGVTEEHGKLT 136 (209)
Q Consensus 108 K~LaE~I~e~LaphQERR~eltdd~V~eF 136 (209)
+.|...++.+|..+|.|-+.+.+..+...
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~ri 33 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRI 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999998776554
No 49
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=20.68 E-value=12 Score=27.58 Aligned_cols=24 Identities=13% Similarity=0.283 Sum_probs=20.6
Q ss_pred hHHHhhhcCccceeeeecccCCCC
Q psy14868 15 NAFITTILRKVAVVQVIRILLHSK 38 (209)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~gL~ggK 38 (209)
.+|-|+.|++.+|-||+..++|.+
T Consensus 10 e~~Rrs~f~k~~vKrl~~~~~~~~ 33 (89)
T 1bh9_B 10 EMYRRSAFPKAAIKRLIQSITGTS 33 (89)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHSSC
T ss_pred HHHHHhcCCHHHHHHHHHHHcCCC
Confidence 578899999999999998888764
Done!