RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14868
(209 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 2e-09
Identities = 39/233 (16%), Positives = 75/233 (32%), Gaps = 73/233 (31%)
Query: 11 YLIVNAFITTILRKVAVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGR 70
+L ++++++ V Q ++L + +L +D++A+ K
Sbjct: 64 FL---GYVSSLVEPSKVGQFDQVLNLC----LTEFENCYLEGNDIHALAAK--------- 107
Query: 71 PRRPDLRAYITSKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEA-MKGVT 129
L + + K +I++Y + ++ P A + V
Sbjct: 108 -----LLQENDTTLVKTKE--LIKNYITARIMAKR----------PFDKKSNSALFRAVG 150
Query: 130 EEHGKLTS--SSSGRPDRYTD---QIYLTSTHYQVDLTGRPDQV-------------YLS 171
E + +L + G D Y + +Y T DL + +
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 172 SGL--------PDSRPDQVYLSS--------GLPDSEWLA-YVVACVSVSGSS 207
GL P + PD+ YL S G+ LA YVV + G +
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ---LAHYVVTAK-LLGFT 259
Score = 45.8 bits (108), Expect = 4e-06
Identities = 42/216 (19%), Positives = 64/216 (29%), Gaps = 72/216 (33%)
Query: 22 LRKVAVVQVIRILLHSKSNTTDLIISLFLGQD---------DLYAVGT-----KAS---D 64
L + V + + ISL G LY + KA D
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 65 Q---PLSGRPRRPDLRAY--IT----SKITARKADIIIQDYTSGAL-------------- 101
Q P S R + R + + S + +D+I +D +
Sbjct: 404 QSRIPFSERKLKFSNR-FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 102 --------LTGELKKILIDTIT--PIVTHHQEAMKGVTEEH----GKLTSSSSGRPDRYT 147
L+G + + ++D I P+ E H G +S G
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPV---KWETTTQFKATHILDFGPGGASGLGV----- 514
Query: 148 DQIYLTSTHYQVDLTGRPDQVYLSSGLPDSRPDQVY 183
L TH D TG +V + +G D PD Y
Sbjct: 515 ----L--THRNKDGTGV--RV-IVAGTLDINPDDDY 541
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 49.4 bits (117), Expect = 2e-07
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
+ DY +G LLTGE+K LI + ++ H E V
Sbjct: 400 LKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDTT 439
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 49.2 bits (117), Expect = 2e-07
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
Y G + + E+K+ + I V+ +QE+ K VT++
Sbjct: 356 YRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDD 395
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 49.3 bits (117), Expect = 2e-07
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
+ + Y+ G LL+GELKKI+ ++ + + K +T
Sbjct: 336 VEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTA 375
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 48.4 bits (115), Expect = 5e-07
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
I + Y+SG +L+GE+K IL+ + + +HQ+ + + ++
Sbjct: 333 IGKKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDD 372
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 48.5 bits (115), Expect = 5e-07
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
Y SG LL+GE+KK+ I+T+ V QE V EE
Sbjct: 362 CYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEE 401
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 48.1 bits (114), Expect = 6e-07
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGK 134
I +DYTSGA+LTGELKK LI+ + P++ HQ K VT+E K
Sbjct: 416 IRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVK 458
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 47.6 bits (113), Expect = 7e-07
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKL 135
I +DYTSGA+LTGELKK LI+ + P++ HQ K VT+E K
Sbjct: 369 IRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKE 412
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 47.3 bits (112), Expect = 1e-06
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKL 135
+ ++Y G ++TGE+KK+LI+TIT I HQE K VT+E +L
Sbjct: 336 VKKEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQL 379
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 44.7 bits (106), Expect = 8e-06
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTE 130
+G L GE K+ LI I + HQ K +
Sbjct: 321 RYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAEK 359
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 31.2 bits (71), Expect = 0.22
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMK 126
I +D+ ++ ELK + + I I+ +E K
Sbjct: 297 IQEDF--SSMNKRELKTDVANYINTIIDLVREHFK 329
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.28
Identities = 30/206 (14%), Positives = 63/206 (30%), Gaps = 56/206 (27%)
Query: 19 TTILRKVAVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRA 78
LR ++ +R LL SK L++ L ++ A
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLV-L----LNVQNAKA---------------WNA 261
Query: 79 Y-ITSKI--TARKADI-----------IIQDYTSGALLTGELKKILIDTIT------P-- 116
+ ++ KI T R + I D+ S L E+K +L+ + P
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 117 IVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPDQVYLSSGLPD 176
++T + + + + D + H D + L+ L
Sbjct: 322 VLTTNPRRLSII----AESIRDGLATWDNW--------KHVNCDKLTTIIESSLNV-LEP 368
Query: 177 SRPDQVYLSSG-LPDSEWLAYVVACV 201
+ +++ P S + ++ +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSL 394
Score = 30.2 bits (67), Expect = 0.53
Identities = 28/143 (19%), Positives = 44/143 (30%), Gaps = 45/143 (31%)
Query: 93 IQDYTSGALLTGELKKI------------LIDTI----TPIVTHHQEAMKGVTE-EHGKL 135
+QD L E+ I L T+ +V Q+ ++ V + L
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV---QKFVEEVLRINYKFL 94
Query: 136 TSS-------SSGRPDRYTDQ---IYLTS---THYQVDLTGRPDQVY-LSSGLPDSRPDQ 181
S S Y +Q +Y + Y V R L L + RP +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---RLQPYLKLRQALLELRPAK 151
Query: 182 ---VYLSSGLPDS--EWLAYVVA 199
+ G+ S W+A V
Sbjct: 152 NVLID---GVLGSGKTWVALDVC 171
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.4
Identities = 5/14 (35%), Positives = 6/14 (42%), Gaps = 4/14 (28%)
Query: 170 LSSGL----PDSRP 179
L + L DS P
Sbjct: 25 LQASLKLYADDSAP 38
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 27.8 bits (62), Expect = 3.0
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMK 126
+ + L +LK + D I ++ ++
Sbjct: 308 MKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFA 342
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 27.1 bits (60), Expect = 4.8
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 80 ITSKITARKADIIIQDYTSGALLTGELKKIL----IDTITPI 117
+T + + +D+ G L +LK + I+ + PI
Sbjct: 313 FGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPI 354
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A*
3c3e_A* 3cgw_A
Length = 311
Score = 26.9 bits (59), Expect = 4.8
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 49 FLGQDDLYAVGTKASDQPLSGRPRRPDLR 77
L +++L V A D +SG PDL
Sbjct: 20 ILPEEELTVVVNTAEDLWVSGNLISPDLD 48
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 26.9 bits (60), Expect = 5.4
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 120 HHQEAMKGVTEEHGKLTSSSSGRPDR--YTDQIYLTSTHYQVDLTGRPDQVYLSSGL 174
H+ A+ +LT + +GRP R H PD +L+S L
Sbjct: 251 PHKRALTDPLFARTRLTRAFTGRPARSLVNR---FLREHGPYAPAAYPDVHHLTSPL 304
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 26.7 bits (59), Expect = 6.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKG 127
+ +DYT G L +LK + +++ +V + A+ G
Sbjct: 312 LERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG 347
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 26.3 bits (58), Expect = 8.6
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 92 IIQDYTSGALLTGELK----KILIDTITPIVTHHQEAMKGVTEE 131
++ D SGAL +LK ++L+D +K
Sbjct: 635 LVADCGSGALHPADLKAAVLQLLLDRSAQARALLNGELKKNMTV 678
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.382
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,214,917
Number of extensions: 188926
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 23
Length of query: 209
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 120
Effective length of database: 4,216,824
Effective search space: 506018880
Effective search space used: 506018880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)