RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14868
         (209 letters)



>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 386

 Score = 43.6 bits (102), Expect = 7e-06
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 36  HSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRA-----------YITSKI 84
              ++  +  I L      +     K +                                
Sbjct: 268 KMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLE 327

Query: 85  TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGK 134
              K + I +DYTSGA+LTGELKK LI+ + P++  HQ   K VT+E  K
Sbjct: 328 DDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVK 377


>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 306

 Score = 33.8 bits (76), Expect = 0.011
 Identities = 5/46 (10%), Positives = 18/46 (39%)

Query: 80  ITSKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAM 125
               +T    + +   + +  L   +LK  + + +  I+   ++ +
Sbjct: 261 FGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIRKRL 306


>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 339

 Score = 31.4 bits (70), Expect = 0.066
 Identities = 6/47 (12%), Positives = 17/47 (36%)

Query: 80  ITSKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMK 126
                T      + +D+ +  +  G+LK  +   +  ++   +E   
Sbjct: 280 WGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN 326


>d2ffea1 c.143.1.1 (A:1-309) LPPG:FO 2-phospho-L-lactate
          transferase CofD {Methanosarcina mazei [TaxId: 2209]}
          Length = 309

 Score = 26.9 bits (59), Expect = 1.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 54 DLYAVGTKASDQPLSGRPRRPDLR 77
          +L  V   A D  +SG    PDL 
Sbjct: 25 ELTVVVNTAEDLWVSGNLISPDLD 48


>d1uwfa1 b.2.3.2 (A:1-158) Mannose-specific adhesin FimH
           {Escherichia coli [TaxId: 562]}
          Length = 158

 Score = 25.5 bits (56), Expect = 3.4
 Identities = 9/49 (18%), Positives = 19/49 (38%)

Query: 137 SSSSGRPDRYTDQIYLTSTHYQVDLTGRPDQVYLSSGLPDSRPDQVYLS 185
           S+  G    ++  +  + + Y    T    +V  +S      P  +YL+
Sbjct: 62  SAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLT 110


>d1ikpa3 f.1.5.1 (A:252-394) Exotoxin A, middle domain
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 143

 Score = 24.7 bits (53), Expect = 6.0
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 2  DLFSCTCQVYLIVNAFITTILRKVAVVQVIRILLHSKSNTTDL 44
           L  C   V  +V  ++   L    V QVIR  L S  +  DL
Sbjct: 32 QLEQCGYPVQRLVALYLAARLSWNQVDQVIRNALASPGSGGDL 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 751,029
Number of extensions: 32968
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 9
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)