BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14871
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 169/184 (91%), Positives = 178/184 (96%)
Query: 33 ILPSFGFTQEQVACVCEVLQQSGNIERLGRFLWSLPACEKLHKNESVLKAKAMVAFHRGN 92
+LPSFGFTQEQVACVCEVLQQ GN+ERLGRFLWSLPAC+ LHKNESVLKAKA+VAFHRGN
Sbjct: 373 MLPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGN 432
Query: 93 FKDLYRILESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIW 152
F++LY+ILESHQFSPHNHPKLQ LWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIW
Sbjct: 433 FRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIW 492
Query: 153 DGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212
DGEETSYCFKEKSR VLR+WY HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA
Sbjct: 493 DGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 552
Query: 213 EQKD 216
E K+
Sbjct: 553 EAKE 556
>pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain
Bound To Dna
Length = 82
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Query: 161 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
F +++ +L ++ Y+H NPYPS K ELA+ +G+T +QVSNWF N+R R
Sbjct: 9 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIR 59
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 87
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 161 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
F +++ +L ++ Y+H NPYPS K ELA+ G+T +QVSNWF N+R R
Sbjct: 8 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58
>pdb|1PUF|B Chain B, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To
Dna
Length = 73
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 161 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
F +++ +L ++ Y+H NPYPS K ELA+ G+T +QVSNWF N+R R
Sbjct: 8 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
pdb|2R5Y|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 63
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 161 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
F +++ +L ++ Y+H NPYPS K ELA G+T +QVSNWF N+R R
Sbjct: 8 FSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIR 58
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain
Length = 64
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 172 WYTH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
+Y+H NPYPS K ELA+ G+T +QVSNWF N+R R
Sbjct: 22 FYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 60
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
pdb|3K2A|B Chain B, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
Length = 67
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 158 SYCFKEKSRSVLRDWY----THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
S F + + ++ R W TH PYPS +K++LA+ TGLT QV+NWF N R+R
Sbjct: 2 SGIFPKVATNIXRAWLFQHLTH-PYPSEEQKKQLAQDTGLTILQVNNWFINARRR 55
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of
Human Homeobox Protein Tgif1, Northeast Structural
Genomics Consortium Target Hr4411b
Length = 89
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 163 EKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
++S +LRDW Y H N YPS +EK L++ T L+T QV NWF N R+R
Sbjct: 14 KESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRR 62
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Tgif2lx
Length = 83
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 168 VLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
+LRDW Y H YPS EK+ L+E T L+ Q+SNWF N R+R
Sbjct: 21 ILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRR 64
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Pknox1
Length = 73
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 153 DGEETSYCFKEKSRSVLRDW---YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
G+ + + +V+R W + +PYP+ EK+++A T LT QV+NWF N R+R
Sbjct: 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 64
>pdb|1BW5|A Chain A, The Nmr Solution Structure Of The Homeodomain Of The Rat
Insulin Gene Enhancer Protein Isl-1, 50 Structures
Length = 66
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
EK LR Y NP P K +L E TGL+ + WF+N+R +D+
Sbjct: 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDK 59
>pdb|2DA2|A Chain A, Solution Structure Of The Second Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 70
Score = 37.0 bits (84), Expect = 0.009, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 217
F + VL+D++ N YP E +L+ L T + WF+N RQ+ R + G
Sbjct: 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPSSG 70
>pdb|2DMQ|A Chain A, Solution Structure Of The Homeobox Domain Of LimHOMEOBOX
Protein Lhx9
Length = 80
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 154 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR--A 211
G+ FK ++ ++ N P ++ ++LA+ TGLT + WF+N R + R
Sbjct: 7 GKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66
Query: 212 AEQKDGSVT 220
Q++G V+
Sbjct: 67 LRQENGGVS 75
>pdb|2DJN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Dlx-5
Length = 70
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 148 PRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQ 207
PRTI+ +S+ R + Y P E+ ELA + GLT TQV WF+N+R
Sbjct: 10 PRTIY----SSFQLAALQRRFQKTQYLALP-----ERAELAASLGLTQTQVKIWFQNKRS 60
Query: 208 RDRAAEQKDG 217
+ + + G
Sbjct: 61 KIKKSGPSSG 70
>pdb|2DN0|A Chain A, Solution Structure Of The Second Homeobox Domain Of Human
Zinc Fingers And Homeoboxes Protein 3
Length = 76
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 167 SVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
S L+ + N +P E L + TGL+T +V WF +RR
Sbjct: 21 SALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRR 60
>pdb|2L9R|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Homeobox
Protein Nkx-3.1 From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr6470a
Length = 69
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
++H Y S E+ LA+ LT TQV WF+NRR + +
Sbjct: 23 FSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK 60
>pdb|2HDD|A Chain A, Engrailed Homeodomain Q50k Variant Dna Complex
pdb|2HDD|B Chain B, Engrailed Homeodomain Q50k Variant Dna Complex
Length = 61
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 148 PRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
PRT + E+ + +E + N Y + R +++L+ GL Q+ WFKN+R
Sbjct: 6 PRTAFSSEQLARLKRE---------FNENRYLTERRRQQLSSELGLNEAQIKIWFKNKR 55
>pdb|1MNM|C Chain C, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
pdb|1MNM|D Chain D, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
Length = 87
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 161 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211
F +++ +L W+ NPY + L + T L+ Q+ NW NRR++++
Sbjct: 34 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87
>pdb|2HOS|A Chain A, Phage-selected Homeodomain Bound To Unmodified Dna
pdb|2HOS|B Chain B, Phage-selected Homeodomain Bound To Unmodified Dna
pdb|2HOT|A Chain A, Phage Selected Homeodomain Bound To Modified Dna
pdb|2HOT|B Chain B, Phage Selected Homeodomain Bound To Modified Dna
Length = 63
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 148 PRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
PRT + E+ + +E + N Y + R +++L+ GL QV WFKN R
Sbjct: 7 PRTAFSSEQLARLKRE---------FNENRYLTERRRQQLSSELGLNEAQVKGWFKNMR 56
>pdb|1K61|A Chain A, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|B Chain B, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|C Chain C, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|D Chain D, Matalpha2 Homeodomain Bound To Dna
Length = 60
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 161 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211
F +++ +L W+ NPY + L + T L+ Q+ NW NRR++++
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>pdb|1APL|C Chain C, Crystal Structure Of A Mat-Alpha2 Homeodomain-Operator
Complex Suggests A General Model For Homeodomain-Dna
Interactions
pdb|1APL|D Chain D, Crystal Structure Of A Mat-Alpha2 Homeodomain-Operator
Complex Suggests A General Model For Homeodomain-Dna
Interactions
pdb|1YRN|B Chain B, Crystal Structure Of The Mata1MATALPHA2 HOMEODOMAIN
Heterodimer Bound To Dna
pdb|1AKH|B Chain B, Mat A1ALPHA2DNA TERNARY COMPLEX
Length = 83
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 161 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211
F +++ +L W+ NPY + L + T L+ Q+ NW NRR++++
Sbjct: 9 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 62
>pdb|3A02|A Chain A, Crystal Structure Of Aristaless Homeodomain
Length = 60
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 157 TSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214
TS+ +E ++ R TH YP + ELA GLT ++ WF+NRR + R E+
Sbjct: 7 TSFQLEELEKAFSR---TH--YPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59
>pdb|2L7F|P Chain P, Solution Structure Of The Pitx2 Homeodomain
pdb|2LKX|A Chain A, Nmr Structure Of The Homeodomain Of Pitx2 In Complex With
A Taatcc Dna Binding Site
Length = 68
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214
+ N YP + E+A T LT +V WFKNRR + R E+
Sbjct: 22 FQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63
>pdb|2L7M|P Chain P, Solution Structure Of The Pitx2 Homeodomain R24h Mutant
Length = 68
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214
+ N YP + E+A T LT +V WFKNRR + R E+
Sbjct: 22 FQRNHYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63
>pdb|1ZTR|A Chain A, Solution Structure Of Engrailed Homeodomain L16a Mutant
Length = 61
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 148 PRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQ 207
PRT + E+ + +E + N Y + R +++L+ GL Q+ WF+N+R
Sbjct: 6 PRTAFSSEQLARAKRE---------FNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRA 56
Query: 208 RDR 210
+ R
Sbjct: 57 KIR 59
>pdb|2CRA|A Chain A, Solution Structure Of The Homeobox Domain Of Human Homeo
Box B13
Length = 70
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 217
Y N + + ++R+++ AT L+ Q++ WF+NRR +++ + G
Sbjct: 26 YAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPSSG 70
>pdb|1HDD|C Chain C, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|1HDD|D Chain D, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|2JWT|A Chain A, Solution Structure Of Engrailed Homeodomain Wt
Length = 61
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 148 PRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
PRT + E+ + +E + N Y + R +++L+ GL Q+ WF+N+R
Sbjct: 6 PRTAFSSEQLARLKRE---------FNENRYLTERRRQQLSSELGLNEAQIKIWFQNKR 55
>pdb|2DA1|A Chain A, Solution Structure Of The First Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 70
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 168 VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 217
VLR ++ N PS + +E+A+ +GL + +WF+N ++R + G
Sbjct: 21 VLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPSSG 70
>pdb|1ENH|A Chain A, Structural Studies Of The Engrailed Homeodomain
Length = 54
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 148 PRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
PRT + E+ + +E + N Y + R +++L+ GL Q+ WF+N+R
Sbjct: 2 PRTAFSSEQLARLKRE---------FNENRYLTERRRQQLSSELGLNEAQIKIWFQNKR 51
>pdb|3RKQ|A Chain A, Nkx2.5 Homeodomain Dimer Bound To Anf-242 Dna
pdb|3RKQ|B Chain B, Nkx2.5 Homeodomain Dimer Bound To Anf-242 Dna
Length = 58
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
+ Y S E+ +LA LT+TQV WF+NRR
Sbjct: 21 FKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRR 54
>pdb|1AKH|A Chain A, Mat A1ALPHA2DNA TERNARY COMPLEX
Length = 61
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 165 SRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
+R+ L + + + +EK E+A+ G+T QV WF N+R R +
Sbjct: 16 ARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>pdb|1FJL|A Chain A, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
pdb|1FJL|B Chain B, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
pdb|1FJL|C Chain C, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
Length = 81
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
+ YP + ELA+ T LT ++ WF+NRR R R
Sbjct: 37 FERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLR 74
>pdb|2VI6|A Chain A, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|B Chain B, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|C Chain C, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|D Chain D, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|E Chain E, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|F Chain F, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|G Chain G, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|H Chain H, Crystal Structure Of The Nanog Homeodomain
Length = 62
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
F + L+D + Y S ++ +EL+ L+ QV WF+N+R +
Sbjct: 10 FSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMK 57
>pdb|3HDD|A Chain A, Engrailed Homeodomain Dna Complex
pdb|3HDD|B Chain B, Engrailed Homeodomain Dna Complex
Length = 60
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 148 PRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
PRT + E+ + +E + N Y + R +++L+ GL Q+ WF+N+R
Sbjct: 4 PRTAFSSEQLARLKRE---------FNENRYLTERRRQQLSSELGLNEAQIKIWFQNKR 53
>pdb|2KT0|A Chain A, Solution Structure Of Human Stem Cell Transcription Factor
Nanog Homeodomain Fragment
Length = 84
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 155 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
++T F VL D + Y S ++ +EL+ L+ QV WF+N+R + +
Sbjct: 23 QKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSK 78
>pdb|3NAR|A Chain A, Crystal Structure Of Zhx1 Hd4 (Zinc-Fingers And Homeoboxes
Protein 1, Homeodomain 4)
pdb|3NAR|B Chain B, Crystal Structure Of Zhx1 Hd4 (Zinc-Fingers And Homeoboxes
Protein 1, Homeodomain 4)
Length = 96
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 168 VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
+L+ + +PSP E +LA+ +GL T + +WF + R
Sbjct: 39 MLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTR 77
>pdb|1LE8|A Chain A, Crystal Structure Of The Mata1MATALPHA2-3a Heterodimer
Bound To Dna Complex
Length = 53
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 164 KSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
++R+ L + + +EK E+A+ G+T QV WF N+R R +
Sbjct: 7 QARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>pdb|1AU7|A Chain A, Pit-1 MutantDNA COMPLEX
pdb|1AU7|B Chain B, Pit-1 MutantDNA COMPLEX
Length = 146
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 20/132 (15%)
Query: 83 KAMVAFHRGNFKDLYRI-LESHQFSPHNHPKLQAL---WLKAHYVEAEKLRGRPLGAVGK 138
+A+ A H F E+ Q S N KL+A+ WL+ EAE++ VG
Sbjct: 28 EALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLE----EAEQVGALYNEKVGA 83
Query: 139 YRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQV 198
+RK +I ++ L + + PS +E +AE L V
Sbjct: 84 NERKRKRRTTISI------------AAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVV 131
Query: 199 SNWFKNRRQRDR 210
WF NRRQR++
Sbjct: 132 RVWFCNRRQREK 143
>pdb|3LNQ|A Chain A, Structure Of Aristaless Homeodomain In Complex With Dna
Length = 58
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213
++ YP + ELA GLT ++ WF+NRR + R E
Sbjct: 18 FSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58
>pdb|2DMT|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Barh-Like 1
Length = 80
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 154 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
G + F E L + Y S ++ +LAE+ GL+ QV W++NRR +
Sbjct: 17 GRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMK 71
>pdb|1DU0|A Chain A, Engrailed Homeodomain Q50a Variant Dna Complex
pdb|1DU0|B Chain B, Engrailed Homeodomain Q50a Variant Dna Complex
Length = 57
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 148 PRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
PRT + E+ + +E + N Y + R +++L+ GL Q+ WF N+R
Sbjct: 2 PRTAFSSEQLARLKRE---------FNENRYLTERRRQQLSSELGLNEAQIKIWFANKR 51
>pdb|4ER5|A Chain A, Crystal Structure Of Human Dot1l In Complex With 2
Molecules Of Epz004777
pdb|4ER6|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0946
Length = 413
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 91 GNFKDLYRILESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGK-YRVRRKFPLPR 149
N K+ RI+ S F+P N ++ R L +G RV PL
Sbjct: 259 ANMKEGGRIVSSKPFAPLNF----------------RINSRNLSDIGTIMRVVELSPLKG 302
Query: 150 TI-WDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELA 188
++ W G+ SY R++L ++++ P RE++E A
Sbjct: 303 SVSWTGKPVSYYLHTIDRTILENYFSSLKNPKLREEQEAA 342
>pdb|4ER3|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Epz004777
Length = 352
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 91 GNFKDLYRILESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGK-YRVRRKFPLPR 149
N K+ RI+ S F+P N ++ R L +G RV PL
Sbjct: 259 ANMKEGGRIVSSKPFAPLNF----------------RINSRNLSDIGTIMRVVELSPLKG 302
Query: 150 TI-WDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELA 188
++ W G+ SY R++L ++++ P RE++E A
Sbjct: 303 SVSWTGKPVSYYLHTIDRTILENYFSSLKNPKLREEQEAA 342
>pdb|3SX0|A Chain A, Crystal Structure Of Dot1l In Complex With A Brominated
Sah Analog
pdb|4EQZ|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed2
pdb|4ER0|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed1
pdb|4ER7|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0947
Length = 421
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 91 GNFKDLYRILESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGK-YRVRRKFPLPR 149
N K+ RI+ S F+P N ++ R L +G RV PL
Sbjct: 259 ANMKEGGRIVSSKPFAPLNF----------------RINSRNLSDIGTIMRVVELSPLKG 302
Query: 150 TI-WDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELA 188
++ W G+ SY R++L ++++ P RE++E A
Sbjct: 303 SVSWTGKPVSYYLHTIDRTILENYFSSLKNPKLREEQEAA 342
>pdb|3UWP|A Chain A, Crystal Structure Of Dot1l In Complex With
5-Iodotubercidin
Length = 438
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 91 GNFKDLYRILESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGK-YRVRRKFPLPR 149
N K+ RI+ S F+P N ++ R L +G RV PL
Sbjct: 276 ANMKEGGRIVSSKPFAPLNF----------------RINSRNLSDIGTIMRVVELSPLKG 319
Query: 150 TI-WDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELA 188
++ W G+ SY R++L ++++ P RE++E A
Sbjct: 320 SVSWTGKPVSYYLHTIDRTILENYFSSLKNPKLREEQEAA 359
>pdb|3SR4|A Chain A, Crystal Structure Of Human Dot1l In Complex With A
Selective Inhibitor
Length = 351
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 91 GNFKDLYRILESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGK-YRVRRKFPLPR 149
N K+ RI+ S F+P N ++ R L +G RV PL
Sbjct: 258 ANMKEGGRIVSSKPFAPLNF----------------RINSRNLSDIGTIMRVVELSPLKG 301
Query: 150 TI-WDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELA 188
++ W G+ SY R++L ++++ P RE++E A
Sbjct: 302 SVSWTGKPVSYYLHTIDRTILENYFSSLKNPKLREEQEAA 341
>pdb|3A01|B Chain B, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
pdb|3A01|F Chain F, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
Length = 67
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214
++ YP + ELA GLT ++ WF+NRR + R E+
Sbjct: 25 FSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 66
>pdb|1YRN|A Chain A, Crystal Structure Of The Mata1MATALPHA2 HOMEODOMAIN
Heterodimer Bound To Dna
pdb|1F43|A Chain A, Solution Structure Of The Mata1 Homeodomain
Length = 61
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 165 SRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
+R+ L + + +EK E+A+ G+T QV WF N+R R +
Sbjct: 16 ARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>pdb|3QOW|A Chain A, Dot1l Structure In Complex With Sam
pdb|3QOX|A Chain A, Dot1l Structure In Complex With Sah
Length = 426
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 91 GNFKDLYRILESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGK-YRVRRKFPLPR 149
N K+ RI+ S F+P N ++ R L +G RV PL
Sbjct: 268 ANMKEGGRIVSSKPFAPLNF----------------RINSRNLSDIGTIMRVVELSPLKG 311
Query: 150 TI-WDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELA 188
++ W G+ SY R++L ++++ P RE++E A
Sbjct: 312 SVSWTGKPVSYYLHTIDRTILENYFSSLKNPKLREEQEAA 351
>pdb|9ANT|A Chain A, Antennapedia Homeodomain-Dna Complex
pdb|9ANT|B Chain B, Antennapedia Homeodomain-Dna Complex
Length = 62
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 176 NPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
N Y + R + E+A A LT Q+ WF+NRR
Sbjct: 25 NRYLTRRRRIEIAHALSLTERQIKIWFQNRR 55
>pdb|4EK9|A Chain A, Crystal Structure Of Dot1l In Complex With Epz000004
pdb|4EKG|A Chain A, Crystal Structure Of Dot1l In Complex With Epz003696
pdb|4EKI|A Chain A, Crystal Structure Of Dot1l In Complex With Epz004777
Length = 425
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 91 GNFKDLYRILESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGK-YRVRRKFPLPR 149
N K+ RI+ S F+P N ++ R L +G RV PL
Sbjct: 267 ANMKEGGRIVSSKPFAPLNF----------------RINSRNLSDIGTIMRVVELSPLKG 310
Query: 150 TI-WDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELA 188
++ W G+ SY R++L ++++ P RE++E A
Sbjct: 311 SVSWTGKPVSYYLHTIDRTILENYFSSLKNPKLREEQEAA 350
>pdb|1NW3|A Chain A, Structure Of The Catalytic Domain Of Human Dot1l, A
Non-Set Domain Nucleosomal Histone Methyltransferase
Length = 416
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 91 GNFKDLYRILESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGK-YRVRRKFPLPR 149
N K+ RI+ S F+P N ++ R L +G RV PL
Sbjct: 258 ANMKEGGRIVSSKPFAPLNF----------------RINSRNLSDIGTIMRVVELSPLKG 301
Query: 150 TI-WDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELA 188
++ W G+ SY R++L ++++ P RE++E A
Sbjct: 302 SVSWTGKPVSYYLHTIDRTILENYFSSLKNPKLREEQEAA 341
>pdb|1P7J|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52e
Length = 59
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 148 PRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
PRT + E+ + +E + N Y + R +++L+ GL Q+ WF+N R
Sbjct: 4 PRTAFSSEQLARLKRE---------FNENRYLTERRRQQLSSELGLNEAQIKIWFQNER 53
>pdb|1B8I|A Chain A, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
Length = 81
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 176 NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
N Y + R + E+A A LT Q+ WF+NRR +
Sbjct: 42 NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMK 74
>pdb|2L7Z|A Chain A, Nmr Structure Of A13 Homedomain
Length = 73
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212
Y N + + ++R ++ T L+ QV+ WF+NRR +++
Sbjct: 26 YATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65
>pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form I
pdb|1MH4|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form Ii
Length = 421
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 182 REKRELAEATGLTTTQVSNWFKNRRQRDR 210
+EK E+A+ G+T QV WF N+R R +
Sbjct: 393 KEKEEVAKKCGITPLQVRVWFINKRMRSK 421
>pdb|1SAN|A Chain A, The Des(1-6)antennapedia Homeodomain: Comparison Of The
Nmr Solution Structure And The Dna Binding Affinity With
The Intact Antennapedia Homeodomain
Length = 62
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 176 NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGS 218
N Y + R + E+A A LT Q+ WF+NRR + + + G
Sbjct: 18 NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKGE 60
>pdb|2E1O|A Chain A, Solution Structure Of Rsgi Ruh-028, A Homeobox Domain From
Human Cdna
Length = 70
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
+ Y SP E++ LA+ L+ QV WF+NRR
Sbjct: 26 FETQKYLSPPERKRLAKMLQLSERQVKTWFQNRR 59
>pdb|1FTT|A Chain A, Thyroid Transcription Factor 1 Homeodomain (Rattus
Norvegicus)
Length = 68
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKN------RRQRDRAAEQ 214
+ Y S E+ LA LT TQV WF+N R+ +D+AA+Q
Sbjct: 21 FKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQ 68
>pdb|1P7I|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52a
Length = 59
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 148 PRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
PRT + E+ + +E + N Y + R +++L+ GL Q+ WF+N R
Sbjct: 4 PRTAFSSEQLARLKRE---------FNENRYLTERRRQQLSSELGLNEAQIKIWFQNAR 53
>pdb|2P81|A Chain A, Engrailed Homeodomain Helix-Turn-Helix Motif
Length = 44
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
+ N Y + R +++L+ GL Q+ WF+N+R
Sbjct: 5 FNENRYLTERRRQQLSSELGLNEAQIKIWFQNKR 38
>pdb|2LD5|A Chain A, Solution Nmr-Derived Complex Structure Of Hoxa13 Dna
Binding Domain Bound To Dna
Length = 67
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212
Y N + + ++R ++ T L+ QV+ WF+NRR +++
Sbjct: 20 YATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 59
>pdb|2CUF|A Chain A, Solution Structure Of The Homeobox Domain Of The Human
Hypothetical Protein Flj21616
Length = 95
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 15/64 (23%)
Query: 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATG---------------LTTTQVSNWFK 203
+ ++++ +V+ ++ N YP ++ E+A A +T+ +V NWF
Sbjct: 12 FTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFA 71
Query: 204 NRRQ 207
NRR+
Sbjct: 72 NRRK 75
>pdb|1AHD|P Chain P, Determination Of The Nmr Solution Structure Of An
Antennapedia Homeodomain-Dna Complex
pdb|2HOA|A Chain A, Structure Determination Of The Antp(C39->s) Homeodomain
From Nuclear Magnetic Resonance Data In Solution Using A
Novel Strategy For The Structure Calculation With The
Programs Diana, Caliba, Habas And Glomsa
Length = 68
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 176 NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGS 218
N Y + R + E+A A LT Q+ WF+NRR + + + G
Sbjct: 24 NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKGE 66
>pdb|3A03|A Chain A, Crystal Structure Of Hox11l1 Homeodomain
Length = 56
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
+ Y + E+ LA+A +T QV WF+NRR
Sbjct: 16 FLRQKYLASAERAALAKALRMTDAQVKTWFQNRR 49
>pdb|2DMP|A Chain A, Solution Structure Of The Third Homeobox Domain Of Zinc
Fingers And Homeoboxes Protein 2
Length = 89
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 161 FKEKSRS---VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214
FKEK++ +L D + + +P+ E L T L+ ++ +WF RR+ + EQ
Sbjct: 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73
>pdb|1FTZ|A Chain A, Nuclear Magnetic Resonance Solution Structure Of The Fushi
Tarazu Homeodomain From Drosophila And Comparison With
The Antennapedia Homeodomain
Length = 70
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 176 NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGS 218
N Y + R + ++A A L+ Q+ WF+NRR + + D S
Sbjct: 25 NRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKKDRTLDSS 67
>pdb|1IG7|A Chain A, Msx-1 HomeodomainDNA COMPLEX STRUCTURE
Length = 58
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
+ Y S E+ E + + LT TQV WF+NRR
Sbjct: 19 FRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRR 52
>pdb|3NAU|A Chain A, Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes
Protein 2, Homeodomain 2)
pdb|3NAU|B Chain B, Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes
Protein 2, Homeodomain 2)
Length = 66
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 169 LRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
L+ + + +P E L E TGL +++ WF + R R
Sbjct: 19 LKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYR 58
>pdb|1HOM|A Chain A, Determination Of The Three-Dimensional Structure Of The
Antennapedia Homeodomain From Drosophila In Solution By
1h Nuclear Magnetic Resonance Spectroscopy
Length = 68
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 176 NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGS 218
N Y + R + E+A A LT Q+ WF+NRR + + + G
Sbjct: 24 NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTKGE 66
>pdb|2R5Y|A Chain A, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|A Chain A, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 88
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 176 NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
N Y + R + E+A A LT Q+ WF+NRR +
Sbjct: 50 NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMK 82
>pdb|1B72|A Chain A, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 97
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 217
F + + L + N Y S + E+A L TQV WF+NRR + + E++ G
Sbjct: 41 FTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREGG 97
>pdb|2K40|A Chain A, Nmr Structure Of Hesx-1 Homeodomain Double Mutant R31lE42L
Length = 67
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 154 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
G F + VL + + N YP +LA+ L ++ WF+NRR
Sbjct: 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRR 53
>pdb|1LE8|B Chain B, Crystal Structure Of The Mata1MATALPHA2-3a Heterodimer
Bound To Dna Complex
Length = 83
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 161 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
F +++ +L W+ NPY + L + T L+ Q+ NW RR +++
Sbjct: 9 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEK 61
>pdb|2DA5|A Chain A, Solution Structure Of The Second Homeobox Domain Of Zinc
Fingers And Homeoboxes Protein 3 (Triple Homeobox 1
Protein)
Length = 75
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 168 VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 215
L + NP P E L T +T ++ +WF RR++ A E K
Sbjct: 21 ALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68
>pdb|2LY9|A Chain A, Solution Nmr Structure Of Homeobox 2 Domain From Human
Zhx1 Repressor, Northeast Structural Genomics Consortium
(Nesg) Target Hr7907f
Length = 74
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 169 LRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR--QRDRAAEQ 214
L+ Y N +P E L + TGLT ++ WF + R QR+ + Q
Sbjct: 21 LKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68
>pdb|1NK2|P Chain P, VndNK-2 HomeodomainDNA COMPLEX, NMR, 20 STRUCTURES
pdb|1NK3|P Chain P, VndNK-2 HomeodomainDNA COMPLEX, NMR, MINIMIZED AVERAGE
Structure
pdb|1VND|A Chain A, VndNK-2 Protein (Homeodomain), Nmr
Length = 77
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 178 YPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 217
Y S E+ LA LT TQV WF+N R + + A+ + G
Sbjct: 33 YLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72
>pdb|2M0C|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Human Alx4,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4490c
Length = 75
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 157 TSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213
TSY +E L + YP + +LA T LT +V WF+NRR + R E
Sbjct: 17 TSYQLEE-----LEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68
>pdb|3L1P|A Chain A, Pou Protein:dna Complex
pdb|3L1P|B Chain B, Pou Protein:dna Complex
Length = 155
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 169 LRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
L + +P PS ++ +A GL V WF NRRQ+ +
Sbjct: 111 LETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGK 152
>pdb|2XSD|C Chain C, Crystal Structure Of The Dimeric Oct-6 (Pou3f1) Pou Domain
Bound To Palindromic More Dna
Length = 164
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 166 RSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
+ L + P PS E LA++ L V WF NRRQ+++
Sbjct: 111 KGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEK 155
>pdb|2DA7|A Chain A, Solution Structure Of The Homeobox Domain Of Zinc Finger
Homeobox Protein 1b (Smad Interacting Protein 1)
Length = 71
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 167 SVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
SVL+ +Y N P+ E +++ A GL V WF+ R+
Sbjct: 18 SVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRK 57
>pdb|3CMY|A Chain A, Structure Of A Homeodomain In Complex With Dna
Length = 61
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 178 YPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
YP + ELA+ LT +V WF NRR R
Sbjct: 26 YPDIYTREELAQRAKLTEARVQVWFSNRRAR 56
>pdb|3D1N|I Chain I, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|J Chain J, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|K Chain K, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|L Chain L, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|M Chain M, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|N Chain N, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|O Chain O, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|P Chain P, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
Length = 151
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQ 207
F ++ L ++ NP P+ +E E A+ V WF NRRQ
Sbjct: 99 SFTPQAIEALNAYFEKNPLPTGQEITEXAKELNYDREVVRVWFSNRRQ 146
>pdb|2M34|A Chain A, Nmr Structure Of The Homeodomain Transcription Factor Gbx1
From Homo Sapiens
Length = 71
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 178 YPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
Y S E+ ++A A L+ QV WF+NRR +
Sbjct: 31 YLSLTERSQIAHALKLSEVQVKIWFQNRRAK 61
>pdb|2DMU|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Goosecoid
Length = 70
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
F ++ L + + YP + +LA L +V WFKNRR
Sbjct: 13 IFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 59
>pdb|1QRY|A Chain A, Homeobox Protein Vnd (Ventral Nervous System Defective
Protein)
Length = 80
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 178 YPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 217
Y S E+ L LT TQV WF+N R + + A+ + G
Sbjct: 36 YLSAPEREHLTSLIRLTPTQVKIWFQNHRYKTKRAQNEKG 75
>pdb|2DMS|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Otx2
Length = 80
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 154 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
G F VL + YP + E+A L ++V WFKNRR + R
Sbjct: 7 GRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 63
>pdb|3FOT|A Chain A, Structural And Functional Characterization Of Tri3
Trichothecene 15-O- Acetyltransferase From Fusarium
Sporotrichioides
pdb|3FP0|A Chain A, Structural And Functional Characterization Of Tri3
Trichothecene 15-O-Acetyltransferase From Fusarium
Sporotrichioides
Length = 519
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 74 HKNESVLKAKAMVAFHRGNFKDLYRI-LESHQFSPHNHPKLQALWLKAHYVEAEKLRGRP 132
HK+E L+ +A+ + R N K YR LE +P LQAL L+ H EA L +P
Sbjct: 375 HKDEKELQVRALESACR-NIKKSYRQWLE--------NPFLQALGLRVHNFEASYLHAKP 425
Query: 133 L 133
+
Sbjct: 426 I 426
>pdb|3A01|A Chain A, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
pdb|3A01|E Chain E, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
Length = 93
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 178 YPSPREKRELAEATGLTTTQVSNWFKNRRQ--RDRAAEQKDG 217
Y + E+ LA +T QV WF+NRR R + AE+++
Sbjct: 41 YLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREA 82
>pdb|1ZQ3|P Chain P, Nmr Solution Structure Of The Bicoid Homeodomain Bound To
The Consensus Dna Binding Site Taatcc
Length = 68
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 186 ELAEATGLTTTQVSNWFKNRRQR 208
+L+ L T QV WFKNRR+R
Sbjct: 34 DLSAKLALGTAQVKIWFKNRRRR 56
>pdb|1JGG|A Chain A, Even-Skipped Homeodomain Complexed To At-Rich Dna
pdb|1JGG|B Chain B, Even-Skipped Homeodomain Complexed To At-Rich Dna
Length = 60
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 170 RDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
+++Y N PR + ELA L + + WF+NRR +D+
Sbjct: 18 KEFYKENYVSRPR-RCELAAQLNLPESTIKVWFQNRRMKDK 57
>pdb|1PUF|A Chain A, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To
Dna
Length = 77
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
+ N Y + + E+A LT QV WF+NRR +
Sbjct: 32 FLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 67
>pdb|1HF0|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Oct-1 Bound
To Dna As A Dimer
pdb|1HF0|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Oct-1 Bound
To Dna As A Dimer
pdb|1GT0|C Chain C, Crystal Structure Of A PouHMGDNA TERNARY COMPLEX
Length = 159
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 166 RSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
R L + N P+ E +A+ + + WF NRRQ+++
Sbjct: 112 RVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFSNRRQKEK 156
>pdb|2D5V|A Chain A, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
pdb|2D5V|B Chain B, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
Length = 164
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
F + R L + N PS + +++ GL + VSN+F N R+R
Sbjct: 102 LVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRR 151
>pdb|1E3O|C Chain C, Crystal Structure Of Oct-1 Pou Dimer Bound To More
Length = 160
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 166 RSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
R L + N P+ + +AE + + WF NRRQ+++
Sbjct: 113 RVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 157
>pdb|2LP0|A Chain A, The Solution Structure Of Homeodomain-Protein Complex
Length = 60
Score = 27.3 bits (59), Expect = 7.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 169 LRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
L + N Y + + E+A LT QV WF+NRR +
Sbjct: 16 LEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMK 55
>pdb|2H1K|A Chain A, Crystal Structure Of The Pdx1 Homeodomain In Complex With
Dna
pdb|2H1K|B Chain B, Crystal Structure Of The Pdx1 Homeodomain In Complex With
Dna
Length = 63
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 173 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213
+ N Y S + ELA LT + WF+NRR + + E
Sbjct: 22 FLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,648,312
Number of Sequences: 62578
Number of extensions: 253406
Number of successful extensions: 537
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 104
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)