Query psy14871
Match_columns 238
No_of_seqs 305 out of 1592
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 22:57:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xsd_C POU domain, class 3, tr 99.8 5.3E-19 1.8E-23 145.9 9.6 139 52-213 7-158 (164)
2 1au7_A Protein PIT-1, GHF-1; c 99.7 1.7E-17 5.9E-22 134.4 9.2 132 56-212 1-145 (146)
3 2ecc_A Homeobox and leucine zi 99.7 3.2E-17 1.1E-21 118.8 5.6 58 158-215 7-64 (76)
4 1e3o_C Octamer-binding transcr 99.7 6.8E-17 2.3E-21 132.6 8.1 137 53-212 2-159 (160)
5 2ecb_A Zinc fingers and homeob 99.7 3.2E-17 1.1E-21 122.3 5.1 58 160-217 17-74 (89)
6 3l1p_A POU domain, class 5, tr 99.7 6.7E-17 2.3E-21 132.1 7.4 130 55-212 7-154 (155)
7 2cue_A Paired box protein PAX6 99.7 5.1E-17 1.7E-21 118.6 5.7 60 158-217 11-70 (80)
8 2dmq_A LIM/homeobox protein LH 99.7 9.8E-17 3.3E-21 116.9 6.8 59 158-216 11-69 (80)
9 2dms_A Homeobox protein OTX2; 99.7 7.9E-17 2.7E-21 117.5 5.6 56 159-214 12-67 (80)
10 1uhs_A HOP, homeodomain only p 99.7 1.2E-16 4.2E-21 114.2 6.2 60 155-214 2-62 (72)
11 3a03_A T-cell leukemia homeobo 99.6 9E-17 3.1E-21 109.6 4.8 54 159-212 2-55 (56)
12 1zq3_P PRD-4, homeotic bicoid 99.6 1.5E-16 5.1E-21 112.6 6.1 60 158-217 6-65 (68)
13 3d1n_I POU domain, class 6, tr 99.6 6.5E-17 2.2E-21 131.5 4.6 53 159-211 98-150 (151)
14 1ig7_A Homeotic protein MSX-1; 99.6 1.2E-16 4.2E-21 109.4 5.1 54 158-211 4-57 (58)
15 2h1k_A IPF-1, pancreatic and d 99.6 1.3E-16 4.4E-21 111.3 5.2 55 158-212 7-61 (63)
16 2hdd_A Protein (engrailed home 99.6 8.8E-17 3E-21 111.3 4.3 55 157-211 6-60 (61)
17 3a02_A Homeobox protein arista 99.6 8.8E-17 3E-21 111.0 4.1 56 158-213 3-58 (60)
18 2l7z_A Homeobox protein HOX-A1 99.6 9.9E-17 3.4E-21 115.1 4.5 61 154-214 7-67 (73)
19 3a01_A Homeodomain-containing 99.6 2.5E-16 8.5E-21 118.3 6.5 61 159-219 22-82 (93)
20 1ftt_A TTF-1 HD, thyroid trans 99.6 1.4E-16 4.9E-21 112.7 4.9 59 158-216 6-64 (68)
21 2dmu_A Homeobox protein goosec 99.6 1.9E-16 6.4E-21 112.6 5.3 56 159-214 12-67 (70)
22 1puf_A HOX-1.7, homeobox prote 99.6 4E-16 1.4E-20 113.0 7.1 58 159-216 18-75 (77)
23 2e1o_A Homeobox protein PRH; D 99.6 2.2E-16 7.4E-21 112.3 5.5 56 159-214 12-67 (70)
24 1ahd_P Antennapedia protein mu 99.6 1.3E-16 4.4E-21 113.0 4.3 58 158-215 6-63 (68)
25 1nk2_P Homeobox protein VND; h 99.6 3.2E-16 1.1E-20 113.5 6.4 58 159-216 14-71 (77)
26 2cra_A Homeobox protein HOX-B1 99.6 1.3E-16 4.5E-21 113.4 4.3 56 158-213 11-66 (70)
27 2hi3_A Homeodomain-only protei 99.6 3.7E-16 1.3E-20 112.1 6.4 58 157-214 5-63 (73)
28 2vi6_A Homeobox protein nanog; 99.6 1E-16 3.5E-21 111.3 3.4 55 158-212 7-61 (62)
29 1akh_A Protein (mating-type pr 99.6 1.4E-16 4.9E-21 110.1 4.1 52 159-210 10-61 (61)
30 1jgg_A Segmentation protein EV 99.6 2.3E-16 8E-21 108.8 5.0 55 158-212 5-59 (60)
31 2dmn_A Homeobox protein TGIF2L 99.6 4.3E-16 1.5E-20 114.6 6.7 58 159-216 12-72 (83)
32 1b72_B Protein (PBX1); homeodo 99.6 1.2E-16 4E-21 118.2 3.4 61 158-218 5-68 (87)
33 2k40_A Homeobox expressed in E 99.6 1.6E-16 5.3E-21 112.1 3.8 58 157-214 4-61 (67)
34 2cqx_A LAG1 longevity assuranc 99.6 9.3E-17 3.2E-21 115.3 2.6 65 148-212 2-67 (72)
35 1bw5_A ISL-1HD, insulin gene e 99.6 1.9E-16 6.5E-21 111.3 4.1 56 158-213 7-62 (66)
36 1k61_A Mating-type protein alp 99.6 2.5E-16 8.4E-21 108.6 4.2 53 159-211 3-58 (60)
37 1du6_A PBX1, homeobox protein 99.6 1.8E-16 6E-21 110.8 3.3 56 156-211 5-63 (64)
38 2ly9_A Zinc fingers and homeob 99.6 3.1E-16 1.1E-20 112.5 4.7 63 152-214 4-66 (74)
39 1fjl_A Paired protein; DNA-bin 99.6 5.3E-16 1.8E-20 113.3 5.8 56 159-214 23-78 (81)
40 2djn_A Homeobox protein DLX-5; 99.6 2.3E-16 7.8E-21 112.2 3.8 55 158-212 11-65 (70)
41 3rkq_A Homeobox protein NKX-2. 99.6 4E-16 1.4E-20 106.4 4.7 53 158-210 6-58 (58)
42 2da2_A Alpha-fetoprotein enhan 99.6 2.9E-16 9.9E-21 111.5 4.1 54 159-212 12-65 (70)
43 2dmt_A Homeobox protein BARH-l 99.6 5.3E-16 1.8E-20 113.1 5.6 54 159-212 22-75 (80)
44 2da1_A Alpha-fetoprotein enhan 99.6 2.4E-16 8.2E-21 112.0 3.6 56 158-213 11-66 (70)
45 1puf_B PRE-B-cell leukemia tra 99.6 4.1E-16 1.4E-20 111.7 4.7 58 158-215 5-65 (73)
46 1yz8_P Pituitary homeobox 2; D 99.6 1.9E-16 6.6E-21 112.0 2.8 58 158-215 7-64 (68)
47 1x2n_A Homeobox protein pknox1 99.6 6E-16 2E-20 110.9 4.9 56 159-214 12-70 (73)
48 2dmp_A Zinc fingers and homeob 99.6 6.6E-16 2.3E-20 115.1 5.1 57 160-216 19-75 (89)
49 2da3_A Alpha-fetoprotein enhan 99.6 4.1E-16 1.4E-20 113.3 3.8 55 159-213 22-76 (80)
50 2kt0_A Nanog, homeobox protein 99.6 3E-16 1E-20 115.3 3.0 56 158-213 26-81 (84)
51 2da5_A Zinc fingers and homeob 99.6 6.9E-16 2.4E-20 111.3 4.7 56 159-214 12-67 (75)
52 2da4_A Hypothetical protein DK 99.6 5.4E-16 1.8E-20 113.0 3.9 55 159-213 13-71 (80)
53 2dn0_A Zinc fingers and homeob 99.6 4.8E-16 1.6E-20 112.3 3.1 56 158-213 12-67 (76)
54 2m0c_A Homeobox protein arista 99.6 6.4E-16 2.2E-20 110.9 3.7 56 159-214 14-69 (75)
55 3nau_A Zinc fingers and homeob 99.6 9.6E-16 3.3E-20 107.8 4.4 52 162-213 12-63 (66)
56 1b8i_A Ultrabithorax, protein 99.6 6.2E-16 2.1E-20 113.1 3.6 54 159-212 25-78 (81)
57 2cuf_A FLJ21616 protein; homeo 99.6 1.9E-15 6.6E-20 113.6 6.2 57 159-215 12-83 (95)
58 2r5y_A Homeotic protein sex co 99.6 7.5E-16 2.6E-20 114.3 3.4 55 158-212 32-86 (88)
59 1b72_A Protein (homeobox prote 99.6 1.6E-15 5.5E-20 114.5 5.1 57 158-214 38-94 (97)
60 1wh5_A ZF-HD homeobox family p 99.6 1.3E-15 4.4E-20 111.4 3.8 53 159-211 22-78 (80)
61 1mnm_C Protein (MAT alpha-2 tr 99.6 2.6E-15 8.9E-20 111.1 5.1 52 159-210 32-86 (87)
62 3nar_A ZHX1, zinc fingers and 99.5 2.1E-15 7.2E-20 113.7 3.5 56 159-214 30-85 (96)
63 3k2a_A Homeobox protein MEIS2; 99.5 1.9E-15 6.4E-20 106.9 3.0 55 160-214 4-61 (67)
64 2l9r_A Homeobox protein NKX-3. 99.5 1.6E-15 5.5E-20 108.0 2.5 54 160-213 10-63 (69)
65 1le8_B Mating-type protein alp 99.5 3.3E-15 1.1E-19 109.7 4.3 54 160-213 8-64 (83)
66 2e19_A Transcription factor 8; 99.5 5E-15 1.7E-19 103.9 4.4 52 160-211 9-60 (64)
67 1x2m_A LAG1 longevity assuranc 99.5 2.8E-15 9.5E-20 105.2 2.3 48 164-211 10-58 (64)
68 2da6_A Hepatocyte nuclear fact 99.5 1.7E-14 5.9E-19 109.8 6.9 60 158-217 10-90 (102)
69 1wh7_A ZF-HD homeobox family p 99.5 4.7E-15 1.6E-19 108.5 3.1 52 159-211 22-78 (80)
70 2lk2_A Homeobox protein TGIF1; 99.5 2E-14 6.8E-19 106.9 6.1 59 159-217 10-71 (89)
71 1wi3_A DNA-binding protein SAT 99.5 3.2E-14 1.1E-18 100.3 4.8 51 159-209 12-63 (71)
72 1lfb_A Liver transcription fac 99.4 5.6E-14 1.9E-18 106.7 3.8 55 159-213 14-89 (99)
73 2d5v_A Hepatocyte nuclear fact 99.4 6E-14 2E-18 115.2 3.5 58 157-214 100-157 (164)
74 2da7_A Zinc finger homeobox pr 99.3 9.8E-13 3.4E-17 93.2 4.0 46 163-208 14-59 (71)
75 1ic8_A Hepatocyte nuclear fact 99.2 2.9E-12 1E-16 108.1 0.9 54 158-211 119-193 (194)
76 2h8r_A Hepatocyte nuclear fact 99.1 2.7E-11 9.1E-16 103.8 3.7 53 157-209 145-218 (221)
77 1mh3_A Maltose binding-A1 home 99.1 2.1E-11 7.3E-16 111.0 3.2 51 160-210 371-421 (421)
78 2nzz_A Penetratin conjugated G 98.3 1.5E-07 5.2E-12 58.5 1.7 21 196-216 1-21 (37)
79 2ys9_A Homeobox and leucine zi 95.0 0.011 3.7E-07 41.5 2.1 39 166-204 18-56 (70)
80 2x7l_M HIV REV; nuclear export 65.4 4.1 0.00014 30.8 2.7 38 166-217 15-52 (115)
81 3lph_A Protein REV; helix-loop 63.3 3.8 0.00013 28.5 2.0 37 166-216 18-54 (72)
82 2glo_A Brinker CG9653-PA; prot 57.4 5.1 0.00017 25.9 1.8 44 160-204 5-48 (59)
83 3hug_A RNA polymerase sigma fa 56.5 11 0.00038 26.3 3.7 51 160-215 37-87 (92)
84 1hlv_A CENP-B, major centromer 50.8 15 0.00053 27.0 3.9 47 159-208 6-52 (131)
85 1tc3_C Protein (TC3 transposas 43.3 15 0.00052 21.4 2.3 39 161-204 6-44 (51)
86 1jko_C HIN recombinase, DNA-in 43.0 8.4 0.00029 23.1 1.1 23 184-206 24-46 (52)
87 2o8x_A Probable RNA polymerase 42.4 19 0.00065 23.1 2.9 47 160-211 15-61 (70)
88 3mzy_A RNA polymerase sigma-H 41.4 23 0.0008 26.2 3.6 50 160-215 109-158 (164)
89 3c57_A Two component transcrip 38.3 20 0.00069 25.3 2.6 45 160-210 27-71 (95)
90 1p4w_A RCSB; solution structur 37.9 23 0.00077 25.6 2.9 43 160-208 34-76 (99)
91 1je8_A Nitrate/nitrite respons 35.8 33 0.0011 23.3 3.4 46 159-210 20-65 (82)
92 1ku3_A Sigma factor SIGA; heli 35.5 28 0.00095 23.0 2.9 50 160-210 10-59 (73)
93 1s7o_A Hypothetical UPF0122 pr 34.6 39 0.0013 24.8 3.8 49 160-213 22-70 (113)
94 2p58_C Putative type III secre 32.6 96 0.0033 23.2 5.5 44 42-104 24-67 (116)
95 2p7v_B Sigma-70, RNA polymeras 32.0 19 0.00066 23.4 1.6 51 160-211 5-55 (68)
96 2elh_A CG11849-PA, LD40883P; s 31.1 40 0.0014 23.2 3.2 40 160-204 22-61 (87)
97 1fse_A GERE; helix-turn-helix 30.9 28 0.00096 22.5 2.3 44 160-209 11-54 (74)
98 1x3u_A Transcriptional regulat 30.5 24 0.00081 23.4 1.8 45 160-210 16-60 (79)
99 2jn6_A Protein CGL2762, transp 29.7 34 0.0012 23.8 2.7 41 160-204 5-46 (97)
100 1xsv_A Hypothetical UPF0122 pr 29.1 51 0.0017 24.1 3.6 49 160-213 25-73 (113)
101 1tty_A Sigma-A, RNA polymerase 27.8 38 0.0013 23.2 2.6 50 160-210 18-67 (87)
102 2k27_A Paired box protein PAX- 27.6 1.2E+02 0.0042 22.7 5.8 43 161-203 84-133 (159)
103 2xi8_A Putative transcription 27.6 17 0.00058 22.8 0.6 23 184-206 17-39 (66)
104 1rp3_A RNA polymerase sigma fa 27.5 45 0.0015 26.4 3.3 49 160-213 187-235 (239)
105 2uwj_G Type III export protein 27.0 93 0.0032 23.3 4.6 44 42-104 23-66 (115)
106 1or7_A Sigma-24, RNA polymeras 26.9 46 0.0016 25.5 3.2 49 160-213 140-188 (194)
107 2r1j_L Repressor protein C2; p 26.3 19 0.00064 22.7 0.7 24 184-207 21-44 (68)
108 3bd1_A CRO protein; transcript 26.3 17 0.0006 24.2 0.5 23 184-206 14-36 (79)
109 1zug_A Phage 434 CRO protein; 24.7 20 0.00069 22.8 0.6 24 184-207 19-42 (71)
110 2rnj_A Response regulator prot 23.6 39 0.0013 23.3 2.0 45 160-210 29-73 (91)
111 3bs3_A Putative DNA-binding pr 23.6 23 0.00079 23.0 0.7 24 184-207 26-49 (76)
112 1adr_A P22 C2 repressor; trans 22.5 24 0.00083 22.8 0.7 24 184-207 21-44 (76)
113 2pmy_A RAS and EF-hand domain- 21.8 39 0.0013 22.9 1.6 44 160-203 20-68 (91)
114 1r69_A Repressor protein CI; g 21.6 26 0.00088 22.1 0.6 24 184-207 17-40 (69)
115 2b5a_A C.BCLI; helix-turn-heli 21.6 26 0.0009 22.7 0.7 23 184-206 26-48 (77)
116 3omt_A Uncharacterized protein 21.4 27 0.00091 22.7 0.7 23 184-206 24-46 (73)
117 2rn7_A IS629 ORFA; helix, all 21.2 69 0.0024 22.6 3.0 44 160-203 6-52 (108)
118 1iuf_A Centromere ABP1 protein 20.5 1.3E+02 0.0046 22.5 4.7 47 158-204 9-59 (144)
No 1
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.78 E-value=5.3e-19 Score=145.92 Aligned_cols=139 Identities=21% Similarity=0.336 Sum_probs=92.8
Q ss_pred hccCchhHHHHHHhcCCCcccCCcchHHHHHHHH-HHhhhccHHHHHHHHhcCCCCCC----------ChhHHHHHH--H
Q psy14871 52 QQSGNIERLGRFLWSLPACEKLHKNESVLKAKAM-VAFHRGNFKDLYRILESHQFSPH----------NHPKLQALW--L 118 (238)
Q Consensus 52 ~~~gd~~~l~~f~~~lp~~~~~~~~e~vlra~a~-v~~h~~~f~e~~~lLe~~~f~~~----------~h~~lq~lw--~ 118 (238)
.++.|+|.|+.| ...++.+.+ +-|++++...++..|.+..|+.. ++..+..|| +
T Consensus 7 ~~~~~~~~l~~f-------------a~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL 73 (164)
T 2xsd_C 7 EDAPSSDDLEQF-------------AKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL 73 (164)
T ss_dssp --CCCHHHHHHH-------------HHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHH
T ss_pred ccccchhHHHHH-------------HHHHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhH
Confidence 468899999999 444454444 44888899988899888887742 233444444 4
Q ss_pred hhhhhHHHHhcCCCCCCCCccccCCCCCCCCcccCCCCcccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccc
Q psy14871 119 KAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQV 198 (238)
Q Consensus 119 ~a~y~~~e~~~grpl~~~~k~r~Rkk~p~P~ti~~~~~t~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV 198 (238)
...+.+++...+.+ +.++++...++.++++ +.|+..|+..|+.+|..++||+..++.+||..+||++.||
T Consensus 74 ~~wl~eae~~~~~~-~~~~~~~~~~~~rr~R---------t~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV 143 (164)
T 2xsd_C 74 NKWLEETDSSSGSP-TNLDKIAAQGRKRKKR---------TSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVV 143 (164)
T ss_dssp HHHHHHHCC---------------------------------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred HHHHhhhccccCCC-cccccccccccCCCCc---------eeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhh
Confidence 55556666555544 2333332222222233 3899999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhHHH
Q psy14871 199 SNWFKNRRQRDRAAE 213 (238)
Q Consensus 199 ~~WFqNRR~R~k~~~ 213 (238)
++||||||+|+|+..
T Consensus 144 ~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 144 RVWFCNRRQKEKRMT 158 (164)
T ss_dssp HHHHHHHHHHHTBSC
T ss_pred hhhhHHhhHHHhhcc
Confidence 999999999999744
No 2
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.72 E-value=1.7e-17 Score=134.37 Aligned_cols=132 Identities=23% Similarity=0.367 Sum_probs=85.6
Q ss_pred chhHHHHHHhcCCCcccCCcchHHHHHHHH-HHhhhccHHHHHHHHhcCCCCCC----------ChhHHHHH--HHhhhh
Q psy14871 56 NIERLGRFLWSLPACEKLHKNESVLKAKAM-VAFHRGNFKDLYRILESHQFSPH----------NHPKLQAL--WLKAHY 122 (238)
Q Consensus 56 d~~~l~~f~~~lp~~~~~~~~e~vlra~a~-v~~h~~~f~e~~~lLe~~~f~~~----------~h~~lq~l--w~~a~y 122 (238)
+++.|+.| ...++.+.+ +-|.+++...++..|.+..|+.. ++..+.+| ++...+
T Consensus 1 ~~~~l~~f-------------a~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl 67 (146)
T 1au7_A 1 GMRALEQF-------------ANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWL 67 (146)
T ss_dssp CHHHHHHH-------------HHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-------------HHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHHHHH
Confidence 36788888 444455544 34788888888888887777631 12222221 233334
Q ss_pred hHHHHhcCCCCCCCCccccCCCCCCCCcccCCCCcccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccc
Q psy14871 123 VEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 202 (238)
Q Consensus 123 ~~~e~~~grpl~~~~k~r~Rkk~p~P~ti~~~~~t~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WF 202 (238)
.+++...+...+..+..+.+++ ++ +.|+..|+..|+.+|..++||+..++.+||..+||++.||++||
T Consensus 68 ~e~e~~~~~~~~~~~~~~~~rr---~R---------t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWF 135 (146)
T 1au7_A 68 EEAEQVGALYNEKVGANERKRK---RR---------TTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWF 135 (146)
T ss_dssp HHCCC----------------C---CC---------CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHhhcccCccCcccCCCCCCCC---CC---------cCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhh
Confidence 4554433333333332222211 22 38999999999999999999999999999999999999999999
Q ss_pred chhhhhhhHH
Q psy14871 203 KNRRQRDRAA 212 (238)
Q Consensus 203 qNRR~R~k~~ 212 (238)
||||+|+|+.
T Consensus 136 qNRR~k~kr~ 145 (146)
T 1au7_A 136 CNRRQREKRV 145 (146)
T ss_dssp HHHHHHTTSC
T ss_pred Hhhhhhhhcc
Confidence 9999999863
No 3
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.2e-17 Score=118.79 Aligned_cols=58 Identities=16% Similarity=0.382 Sum_probs=54.0
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhh
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 215 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~ 215 (238)
+..|+.+|+.+|+.+|..++||+..++++||..+||++.||+|||+|+|+|+|+...+
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 4479999999999999999999999999999999999999999999999999976543
No 4
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.68 E-value=6.8e-17 Score=132.65 Aligned_cols=137 Identities=19% Similarity=0.358 Sum_probs=87.3
Q ss_pred ccCchhHHHHHHhcCCCcccCCcchHHHHHHHH-HHhhhccHHHHHHHHhcCCCCCCC-----------------hhHHH
Q psy14871 53 QSGNIERLGRFLWSLPACEKLHKNESVLKAKAM-VAFHRGNFKDLYRILESHQFSPHN-----------------HPKLQ 114 (238)
Q Consensus 53 ~~gd~~~l~~f~~~lp~~~~~~~~e~vlra~a~-v~~h~~~f~e~~~lLe~~~f~~~~-----------------h~~lq 114 (238)
+.+|++.|..| ...+|.+.+ .-+.+++...++.+|.+..|+... .+.|
T Consensus 2 ~~~~~~~~~~~-------------~~~~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkPlL- 67 (160)
T 1e3o_C 2 EPSDLEELEQF-------------AKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLL- 67 (160)
T ss_dssp CSCCHHHHHHH-------------HHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHH-
T ss_pred CCCcHHHHHHH-------------HHHHHHHHHHcCCCHHHHHHhhccccCCCcCccccccccccCCChHHHHhcchhH-
Confidence 57899999999 444454443 447788888888888887776421 1122
Q ss_pred HHHHhhhhhHH--HHhcCCCCCCC-CccccCCCCCCCCcccCCCCcccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Q psy14871 115 ALWLKAHYVEA--EKLRGRPLGAV-GKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEAT 191 (238)
Q Consensus 115 ~lw~~a~y~~~--e~~~grpl~~~-~k~r~Rkk~p~P~ti~~~~~t~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~l 191 (238)
+.|++...... +...+.+.+.. .+.....+ ..+.++.|+..|+..|+.+|..++||+..++..||..+
T Consensus 68 ~~WL~e~e~~~~~~~~~~s~~~~~~~~~~~~~~---------~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l 138 (160)
T 1e3o_C 68 EKWLNDAEANLSSDSSLSSPSALNSPGIEGLSR---------RRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQL 138 (160)
T ss_dssp HHHHHHHC-------------------------------------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred HHHHHhhhcccccCCCCCCCCCcCCCCCCCCCC---------CCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 24554322111 01111110000 00000001 11223489999999999999999999999999999999
Q ss_pred CCCccccccccchhhhhhhHH
Q psy14871 192 GLTTTQVSNWFKNRRQRDRAA 212 (238)
Q Consensus 192 gLs~~qV~~WFqNRR~R~k~~ 212 (238)
||++.||++||||||+|+|+.
T Consensus 139 ~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 139 NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCChHHhhHhhHHhhhhhhcc
Confidence 999999999999999999863
No 5
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=3.2e-17 Score=122.33 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=53.5
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhhcc
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 217 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~~~ 217 (238)
.|+..|+.+|+.+|..++||+..++.+||..+||+++||+|||||||+|+|+...+..
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhh
Confidence 7899999999999999999999999999999999999999999999999987554433
No 6
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.67 E-value=6.7e-17 Score=132.05 Aligned_cols=130 Identities=21% Similarity=0.351 Sum_probs=87.4
Q ss_pred CchhHHHHHHhcCCCcccCCcchHHHHHHHHH-HhhhccHHHHHHHHhcCCCCCCC-----------------hhHHHHH
Q psy14871 55 GNIERLGRFLWSLPACEKLHKNESVLKAKAMV-AFHRGNFKDLYRILESHQFSPHN-----------------HPKLQAL 116 (238)
Q Consensus 55 gd~~~l~~f~~~lp~~~~~~~~e~vlra~a~v-~~h~~~f~e~~~lLe~~~f~~~~-----------------h~~lq~l 116 (238)
.+.+.|+.| ...++.+.+- -|.+++...++..|.+..|+... .+.|+.
T Consensus 7 ~~~~~l~~f-------------a~~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~- 72 (155)
T 3l1p_A 7 ALQKELEQF-------------AKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEK- 72 (155)
T ss_dssp HHHHHHHHH-------------HHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHH-
T ss_pred hhHHHHHHH-------------HHHHHhhhheecccHHHHHHHHHhhcCcccccccccccccccCChhhHhhcchHHHH-
Confidence 346778888 4444444443 37888888888888777775522 445555
Q ss_pred HHhhhhhHHHHhcCCCCCCCCccccCCCCCCCCcccCCCCcccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcc
Q psy14871 117 WLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTT 196 (238)
Q Consensus 117 w~~a~y~~~e~~~grpl~~~~k~r~Rkk~p~P~ti~~~~~t~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~ 196 (238)
|++.................. .+.|+ .++.|+..|+..|+.+|..++||+..++.+||..+||++.
T Consensus 73 Wl~eae~~~~~~~~~~~~~~~-~~~rr-------------~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~ 138 (155)
T 3l1p_A 73 WVEEADNNENLQEISKSETLV-QARKR-------------KRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKD 138 (155)
T ss_dssp HHHHHTTCHHHHHSSCC---C-CCSCC-------------CCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHH
T ss_pred HhhhhhcccCccccccccccc-cCCCC-------------CCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChh
Confidence 654332111111111111111 11111 2238999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhHH
Q psy14871 197 QVSNWFKNRRQRDRAA 212 (238)
Q Consensus 197 qV~~WFqNRR~R~k~~ 212 (238)
||++||||||+|+|+.
T Consensus 139 qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 139 VVRVWFSNRRQKGKRS 154 (155)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred heeeccccccccccCC
Confidence 9999999999999864
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=5.1e-17 Score=118.60 Aligned_cols=60 Identities=23% Similarity=0.433 Sum_probs=56.1
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhhcc
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 217 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~~~ 217 (238)
++.|+..|+.+|+.+|..++||+..++.+||..+||++.||++||||||+|+|+......
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 11 RTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp CCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 348999999999999999999999999999999999999999999999999999876654
No 8
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=9.8e-17 Score=116.85 Aligned_cols=59 Identities=25% Similarity=0.515 Sum_probs=55.2
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhhc
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKD 216 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~~ 216 (238)
++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||+|||+|+|+.....
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 11 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999877643
No 9
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=7.9e-17 Score=117.51 Aligned_cols=56 Identities=30% Similarity=0.510 Sum_probs=53.2
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
+.|+..|+.+|+.+|..++||+..++.+||..+||++.+|++||+|||+|+|+...
T Consensus 12 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 12 TTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp SSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 48999999999999999999999999999999999999999999999999997554
No 10
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=1.2e-16 Score=114.21 Aligned_cols=60 Identities=28% Similarity=0.416 Sum_probs=55.6
Q ss_pred CCcccccCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 155 EETSYCFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 155 ~~t~~~fs~~q~~~Le~~F~~-~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
..+++.|+..|+.+|+.+|.. ++||+..++.+||..+||++.||++||+|||+|+|+...
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 345568999999999999996 999999999999999999999999999999999998764
No 11
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.65 E-value=9e-17 Score=109.59 Aligned_cols=54 Identities=30% Similarity=0.474 Sum_probs=50.8
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHH
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~ 212 (238)
+.|+..|+..|+..|..++||+..++.+||..+||++.||++||+|||+|+|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 379999999999999999999999999999999999999999999999999975
No 12
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.65 E-value=1.5e-16 Score=112.63 Aligned_cols=60 Identities=25% Similarity=0.438 Sum_probs=56.1
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhhcc
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 217 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~~~ 217 (238)
++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||+|||+|+|+......
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 6 RTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp SCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcccc
Confidence 458999999999999999999999999999999999999999999999999999877543
No 13
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.65 E-value=6.5e-17 Score=131.47 Aligned_cols=53 Identities=28% Similarity=0.532 Sum_probs=51.2
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhH
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~ 211 (238)
+.|+..|+.+|+.+|..++||+..++.+||..+||++.||++||||||+|+|+
T Consensus 98 t~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 98 TSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 38999999999999999999999999999999999999999999999999985
No 14
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=1.2e-16 Score=109.36 Aligned_cols=54 Identities=30% Similarity=0.461 Sum_probs=51.9
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhH
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~ 211 (238)
++.|+..|+.+|+..|..++||+..++.+||..+||++.||++||+|||+|+|+
T Consensus 4 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 4 RTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 348999999999999999999999999999999999999999999999999986
No 15
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.64 E-value=1.3e-16 Score=111.29 Aligned_cols=55 Identities=25% Similarity=0.370 Sum_probs=52.7
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHH
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~ 212 (238)
++.|+..|+.+|+.+|..++||+..++.+||..+||++.||++||+|||+|+|+.
T Consensus 7 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 7 RTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 4589999999999999999999999999999999999999999999999999975
No 16
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.64 E-value=8.8e-17 Score=111.33 Aligned_cols=55 Identities=25% Similarity=0.534 Sum_probs=51.9
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhH
Q psy14871 157 TSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211 (238)
Q Consensus 157 t~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~ 211 (238)
.++.|+..|+..|+.+|..++||+..++.+||..+||++.||++||+|||+|+|+
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 6 PRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3458999999999999999999999999999999999999999999999999985
No 17
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.64 E-value=8.8e-17 Score=110.98 Aligned_cols=56 Identities=30% Similarity=0.509 Sum_probs=50.4
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
++.|+..|+..|+.+|..++||+..++.+||..+||++.||++||+|||+|+|+..
T Consensus 3 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp --CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 35899999999999999999999999999999999999999999999999999764
No 18
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.64 E-value=9.9e-17 Score=115.14 Aligned_cols=61 Identities=23% Similarity=0.469 Sum_probs=55.4
Q ss_pred CCCcccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 154 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 154 ~~~t~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
+.+.++.|+..|+..|+.+|..++||+..++.+||..+||++.||++||||||+|+|+...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 3344558999999999999999999999999999999999999999999999999997544
No 19
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.64 E-value=2.5e-16 Score=118.26 Aligned_cols=61 Identities=25% Similarity=0.436 Sum_probs=55.5
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhhcccc
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGSV 219 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~~~~~ 219 (238)
+.|+..|+..|+.+|..++||+..++.+||..+||++.||++||||||+|+|+........
T Consensus 22 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~ 82 (93)
T 3a01_A 22 TSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREA 82 (93)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred cCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999987765443
No 20
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.64 E-value=1.4e-16 Score=112.70 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=54.9
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhhc
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKD 216 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~~ 216 (238)
++.|+..|+..|+.+|..++||+..++.+||..+||++.+|++||+|||+|+|+.....
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 6 RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 34899999999999999999999999999999999999999999999999999876543
No 21
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=112.61 Aligned_cols=56 Identities=27% Similarity=0.513 Sum_probs=53.0
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
+.|+..|+.+|+.+|..++||+..++.+||..+||++.||++||+|||+|+|+...
T Consensus 12 t~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 12 TIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 48999999999999999999999999999999999999999999999999997543
No 22
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.63 E-value=4e-16 Score=112.99 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=54.8
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhhc
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKD 216 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~~ 216 (238)
+.|+..|+.+|+.+|..++||+..++.+||..+||++.||++||||||+|+|+.....
T Consensus 18 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 18 CPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 4899999999999999999999999999999999999999999999999999987653
No 23
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=2.2e-16 Score=112.35 Aligned_cols=56 Identities=30% Similarity=0.509 Sum_probs=53.3
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
..|+..|+.+|+.+|..++||+..++.+||..+||++.||++||+|||+|+|+...
T Consensus 12 ~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 12 VRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 47999999999999999999999999999999999999999999999999998654
No 24
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.63 E-value=1.3e-16 Score=113.04 Aligned_cols=58 Identities=26% Similarity=0.426 Sum_probs=54.5
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhh
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 215 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~ 215 (238)
++.|+..|+..|+.+|..++||+..++.+||..+||++.||++||||||+|+|+....
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 6 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp TCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 3589999999999999999999999999999999999999999999999999987653
No 25
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.63 E-value=3.2e-16 Score=113.54 Aligned_cols=58 Identities=29% Similarity=0.471 Sum_probs=54.9
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhhc
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKD 216 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~~ 216 (238)
+.|+..|+.+|+.+|..++||+..++.+||..+||++.||++||||||+|+|+.....
T Consensus 14 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 14 VLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 4899999999999999999999999999999999999999999999999999877654
No 26
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.3e-16 Score=113.44 Aligned_cols=56 Identities=23% Similarity=0.489 Sum_probs=52.7
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
++.|+..|+.+|+.+|..++||+..++.+||..+||++.||++||+|||+|+|+..
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 11 RIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34899999999999999999999999999999999999999999999999998643
No 27
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=3.7e-16 Score=112.09 Aligned_cols=58 Identities=29% Similarity=0.379 Sum_probs=54.4
Q ss_pred cccccCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 157 TSYCFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 157 t~~~fs~~q~~~Le~~F~~-~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
+++.|+..|+.+|+.+|.. ++||+..++.+||..+||++.||++||+|||+|+|+...
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 5 TVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 4558999999999999995 999999999999999999999999999999999998774
No 28
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.63 E-value=1e-16 Score=111.34 Aligned_cols=55 Identities=25% Similarity=0.462 Sum_probs=52.0
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHH
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~ 212 (238)
++.|+..|+.+|+.+|..++||+..++.+||..+||++.+|++||+|||+|+|+.
T Consensus 7 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 7 RTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 3489999999999999999999999999999999999999999999999999864
No 29
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.63 E-value=1.4e-16 Score=110.11 Aligned_cols=52 Identities=29% Similarity=0.543 Sum_probs=48.4
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhh
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k 210 (238)
+.|+..|+.+|+.+|..++||+..++..||..+||++.||++||+|||+|+|
T Consensus 10 t~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 10 SSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4899999999999999999999999999999999999999999999999975
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.63 E-value=2.3e-16 Score=108.83 Aligned_cols=55 Identities=25% Similarity=0.450 Sum_probs=52.4
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHH
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~ 212 (238)
++.|+..|+..|+.+|..++||+..++.+||..+||++.+|++||+|||+|+|+.
T Consensus 5 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 5 RTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 3589999999999999999999999999999999999999999999999999873
No 31
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.63 E-value=4.3e-16 Score=114.60 Aligned_cols=58 Identities=38% Similarity=0.593 Sum_probs=53.7
Q ss_pred cccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhhc
Q psy14871 159 YCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKD 216 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~~ 216 (238)
..|+..++.+|+.||.. ++||+..++.+||..+||++.||+|||+|+|+|+++.....
T Consensus 12 ~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 12 GNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp SSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 37999999999999987 69999999999999999999999999999999999876644
No 32
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.62 E-value=1.2e-16 Score=118.21 Aligned_cols=61 Identities=38% Similarity=0.664 Sum_probs=55.8
Q ss_pred ccccCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhhccc
Q psy14871 158 SYCFKEKSRSVLRDWY---THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGS 218 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F---~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~~~~ 218 (238)
+..|+..|+.+|+.+| ..++||+..++..||..+||++.||++||+|||+|+|+.......
T Consensus 5 R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 68 (87)
T 1b72_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQE 68 (87)
T ss_dssp CCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccccc
Confidence 3489999999999999 889999999999999999999999999999999999987665443
No 33
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-16 Score=112.09 Aligned_cols=58 Identities=24% Similarity=0.456 Sum_probs=53.8
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 157 TSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 157 t~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||+|||+|+|+...
T Consensus 4 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 4 PRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 3458999999999999999999999999999999999999999999999999986543
No 34
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=9.3e-17 Score=115.25 Aligned_cols=65 Identities=18% Similarity=0.401 Sum_probs=56.4
Q ss_pred CCcccCCCCcccccCHHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHH
Q psy14871 148 PRTIWDGEETSYCFKEKSRSVLRDWY-THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212 (238)
Q Consensus 148 P~ti~~~~~t~~~fs~~q~~~Le~~F-~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~ 212 (238)
|..++.|...++.++..|+.+||..| ..++||+..++.+||..+||++.||++||||||+|+|+.
T Consensus 2 P~~~~~g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 2 SSGSSGGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 34445555555677788899999999 999999999999999999999999999999999999853
No 35
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.62 E-value=1.9e-16 Score=111.30 Aligned_cols=56 Identities=34% Similarity=0.603 Sum_probs=52.8
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
++.|+..|+.+|+.+|..++||+..++..||..+||++.||++||+|||+|+|+..
T Consensus 7 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 7 RTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 45899999999999999999999999999999999999999999999999998643
No 36
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.61 E-value=2.5e-16 Score=108.65 Aligned_cols=53 Identities=28% Similarity=0.693 Sum_probs=51.1
Q ss_pred cccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccchhhhhhhH
Q psy14871 159 YCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~ 211 (238)
..|+..|+.+|+.+|.. ++||+..++..||..+||++.||++||+|||+|+|+
T Consensus 3 ~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 47999999999999999 999999999999999999999999999999999985
No 37
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=1.8e-16 Score=110.76 Aligned_cols=56 Identities=38% Similarity=0.717 Sum_probs=52.2
Q ss_pred CcccccCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhH
Q psy14871 156 ETSYCFKEKSRSVLRDWY---THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211 (238)
Q Consensus 156 ~t~~~fs~~q~~~Le~~F---~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~ 211 (238)
..+..|+..|+.+|+.+| ..++||+..++.+||..+||++.||++||+|+|+|+|+
T Consensus 5 r~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 5 IEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 344589999999999999 88999999999999999999999999999999999875
No 38
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.61 E-value=3.1e-16 Score=112.54 Aligned_cols=63 Identities=24% Similarity=0.354 Sum_probs=57.1
Q ss_pred cCCCCcccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 152 WDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 152 ~~~~~t~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
++....++.|+..|+..|+..|..++||+..++.+||..+||++.||++||||||+|+|+...
T Consensus 4 ~~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 4 PDSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 344556679999999999999999999999999999999999999999999999999997544
No 39
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.61 E-value=5.3e-16 Score=113.35 Aligned_cols=56 Identities=30% Similarity=0.517 Sum_probs=53.5
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
+.|+..|+.+|+.+|..++||+..++..||..+||++.||++||+|||+|+|+...
T Consensus 23 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 23 TTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 38999999999999999999999999999999999999999999999999998764
No 40
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-16 Score=112.21 Aligned_cols=55 Identities=29% Similarity=0.498 Sum_probs=52.2
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHH
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~ 212 (238)
++.|+..|+.+|+.+|..++||+..++.+||..+||++.||++||+|||+|+|+.
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 11 RTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp SCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 3489999999999999999999999999999999999999999999999998864
No 41
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.61 E-value=4e-16 Score=106.44 Aligned_cols=53 Identities=32% Similarity=0.515 Sum_probs=50.6
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhh
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k 210 (238)
++.|+..|+..|+.+|..++||+..++.+||..+||++.||++||||||+|+|
T Consensus 6 Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 6 RVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 34899999999999999999999999999999999999999999999999975
No 42
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.61 E-value=2.9e-16 Score=111.55 Aligned_cols=54 Identities=31% Similarity=0.579 Sum_probs=51.8
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHH
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~ 212 (238)
+.|+..|+.+|+.+|..++||+..++.+||..+||++.||++||+|||+|+|+.
T Consensus 12 t~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 12 TRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 489999999999999999999999999999999999999999999999999864
No 43
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.3e-16 Score=113.12 Aligned_cols=54 Identities=30% Similarity=0.512 Sum_probs=51.8
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHH
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~ 212 (238)
+.|+..|+.+|+.+|..++||+..++.+||..+||++.||++||||||+|+|+.
T Consensus 22 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 22 TVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 389999999999999999999999999999999999999999999999999864
No 44
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.61 E-value=2.4e-16 Score=111.96 Aligned_cols=56 Identities=25% Similarity=0.536 Sum_probs=52.8
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
++.|+..|+.+|+.+|..++||+..++.+||..+||++.||++||+|||+|+|+..
T Consensus 11 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 11 RTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 34899999999999999999999999999999999999999999999999998643
No 45
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.61 E-value=4.1e-16 Score=111.71 Aligned_cols=58 Identities=40% Similarity=0.728 Sum_probs=54.0
Q ss_pred ccccCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhh
Q psy14871 158 SYCFKEKSRSVLRDWY---THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 215 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F---~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~ 215 (238)
+..|+..|+.+|+.+| ..++||+..++..||..+||++.||++||+|+|+|+|+....
T Consensus 5 R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 3489999999999999 889999999999999999999999999999999999986554
No 46
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.60 E-value=1.9e-16 Score=111.99 Aligned_cols=58 Identities=33% Similarity=0.483 Sum_probs=54.5
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhh
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 215 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~ 215 (238)
++.|+..|+.+|+.+|..++||+..++.+||..+||++.+|++||+|||+|+|+....
T Consensus 7 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 7 RTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 3489999999999999999999999999999999999999999999999999987653
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=6e-16 Score=110.85 Aligned_cols=56 Identities=36% Similarity=0.663 Sum_probs=52.5
Q ss_pred cccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 159 YCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
..|+..++.+|+.+|.. ++||+..++.+||..+||++.||++||+|+|+|+|+...
T Consensus 12 ~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 12 GVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 47999999999999976 999999999999999999999999999999999997654
No 48
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.6e-16 Score=115.07 Aligned_cols=57 Identities=23% Similarity=0.412 Sum_probs=52.9
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhhc
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKD 216 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~~ 216 (238)
.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||||||+|+|+.....
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 589999999999999999999999999999999999999999999999988765543
No 49
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.59 E-value=4.1e-16 Score=113.34 Aligned_cols=55 Identities=24% Similarity=0.437 Sum_probs=52.0
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
+.|+..|+.+|+.+|..++||+..++.+||..+||++.||++||||||+|+|+..
T Consensus 22 t~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 22 TTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp SSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 4799999999999999999999999999999999999999999999999998643
No 50
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.59 E-value=3e-16 Score=115.25 Aligned_cols=56 Identities=27% Similarity=0.490 Sum_probs=52.8
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
++.|+..|+.+|+.+|..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 26 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 26 RTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34899999999999999999999999999999999999999999999999998643
No 51
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.9e-16 Score=111.32 Aligned_cols=56 Identities=25% Similarity=0.429 Sum_probs=52.9
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
..|+..|+.+|+..|..++||+..++.+||..+||++.||++||+|||+|+|+...
T Consensus 12 ~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 12 KERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred ccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 36899999999999999999999999999999999999999999999999997654
No 52
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.4e-16 Score=113.04 Aligned_cols=55 Identities=16% Similarity=0.337 Sum_probs=52.5
Q ss_pred cccCHHHHHHHHHHHhhC----CCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 159 YCFKEKSRSVLRDWYTHN----PYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~----~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
+.|+..|+.+|+.+|..+ +||+..++.+||..+||++.||+|||||||+|+|+..
T Consensus 13 t~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 13 TQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 489999999999999999 9999999999999999999999999999999999843
No 53
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.8e-16 Score=112.30 Aligned_cols=56 Identities=29% Similarity=0.500 Sum_probs=52.9
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
++.|+..|+.+|+.+|..++||+..++.+||..+||++.||++||+|||+|+|+..
T Consensus 12 R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 12 KNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 45899999999999999999999999999999999999999999999999998643
No 54
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.58 E-value=6.4e-16 Score=110.91 Aligned_cols=56 Identities=30% Similarity=0.488 Sum_probs=53.0
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
+.|+..|+.+|+.+|..++||+..++.+||..+||++.+|++||+|||+|+|+...
T Consensus 14 t~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 14 TTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999997544
No 55
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.58 E-value=9.6e-16 Score=107.80 Aligned_cols=52 Identities=23% Similarity=0.485 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 162 KEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 162 s~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
+..|+..|+..|..++||+..++.+||..+||+.+||++||+|||+|+|+..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 6789999999999999999999999999999999999999999999999754
No 56
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.58 E-value=6.2e-16 Score=113.15 Aligned_cols=54 Identities=28% Similarity=0.449 Sum_probs=52.0
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHH
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~ 212 (238)
+.|+..|+..|+..|..++||+..++.+||..+||++.+|++||+|||+|+|+.
T Consensus 25 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 25 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 489999999999999999999999999999999999999999999999999874
No 57
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=1.9e-15 Score=113.65 Aligned_cols=57 Identities=26% Similarity=0.630 Sum_probs=54.5
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------CCccccccccchhhhhhhHHHhh
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATG---------------LTTTQVSNWFKNRRQRDRAAEQK 215 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lg---------------Ls~~qV~~WFqNRR~R~k~~~~~ 215 (238)
+.|+..|+.+|+.+|..++||+..++++||..+| |++.+|++||||||+|+|+....
T Consensus 12 ~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 12 FTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 4899999999999999999999999999999999 99999999999999999988775
No 58
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.57 E-value=7.5e-16 Score=114.28 Aligned_cols=55 Identities=27% Similarity=0.437 Sum_probs=52.3
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHH
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~ 212 (238)
++.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||||||+|+|+.
T Consensus 32 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 32 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 3489999999999999999999999999999999999999999999999999864
No 59
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=1.6e-15 Score=114.51 Aligned_cols=57 Identities=30% Similarity=0.481 Sum_probs=54.2
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
++.|+..|+.+|+..|..++||+..++.+||..+||++.||++||||||+|+|+...
T Consensus 38 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 38 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 458999999999999999999999999999999999999999999999999998765
No 60
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.56 E-value=1.3e-15 Score=111.43 Aligned_cols=53 Identities=9% Similarity=0.214 Sum_probs=50.8
Q ss_pred cccCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCCccccccccchhhhhhhH
Q psy14871 159 YCFKEKSRSVLRDWYTH----NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~----~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~ 211 (238)
+.|+..|+..|+.+|+. ++||+..++++||..+||++.||+|||||||+|.|+
T Consensus 22 t~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 22 TKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred ccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 48999999999999999 999999999999999999999999999999999874
No 61
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.55 E-value=2.6e-15 Score=111.12 Aligned_cols=52 Identities=29% Similarity=0.703 Sum_probs=50.4
Q ss_pred cccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccchhhhhhh
Q psy14871 159 YCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k 210 (238)
..|+..|+.+|+.+|.. ++||+..++..||..+||++.||++||+|||+|+|
T Consensus 32 ~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 32 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 38999999999999999 99999999999999999999999999999999987
No 62
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.54 E-value=2.1e-15 Score=113.69 Aligned_cols=56 Identities=23% Similarity=0.450 Sum_probs=53.0
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
+.|+..|+.+|+.+|..++||+..++.+||..+||++.||++||||||+|+|+...
T Consensus 30 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 30 CKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp SSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 48999999999999999999999999999999999999999999999999998643
No 63
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.9e-15 Score=106.87 Aligned_cols=55 Identities=40% Similarity=0.728 Sum_probs=49.9
Q ss_pred ccCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 160 CFKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~---~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
.|+.+++.+|+.||. .++||+..++.+||..+||+..||++||+|+|+|.|+...
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 689999999999999 8999999999999999999999999999999999986543
No 64
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-15 Score=108.01 Aligned_cols=54 Identities=31% Similarity=0.491 Sum_probs=51.2
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
..+..|+..|+..|..++||+..++.+||..+||++.||++||||||+|+|+..
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 578999999999999999999999999999999999999999999999998644
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.54 E-value=3.3e-15 Score=109.74 Aligned_cols=54 Identities=26% Similarity=0.650 Sum_probs=51.7
Q ss_pred ccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 160 CFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
.|+..|+.+|+.+|.. ++||+..++..||..+||++.||++||+|||+|+|+..
T Consensus 8 rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 8 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp CCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 5999999999999999 99999999999999999999999999999999998753
No 66
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=5e-15 Score=103.86 Aligned_cols=52 Identities=23% Similarity=0.395 Sum_probs=49.2
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhH
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~ 211 (238)
.++..|+..|+.+|..++||+..++.+||..+||++++|++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 5678999999999999999999999999999999999999999999998764
No 67
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.52 E-value=2.8e-15 Score=105.16 Aligned_cols=48 Identities=15% Similarity=0.472 Sum_probs=44.9
Q ss_pred HHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhH
Q psy14871 164 KSRSVLRDWY-THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211 (238)
Q Consensus 164 ~q~~~Le~~F-~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~ 211 (238)
.++..||..| ..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 3589999999 57999999999999999999999999999999999885
No 68
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=109.82 Aligned_cols=60 Identities=27% Similarity=0.444 Sum_probs=55.2
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh---------------------CCCccccccccchhhhhhhHHHhhc
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEAT---------------------GLTTTQVSNWFKNRRQRDRAAEQKD 216 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~l---------------------gLs~~qV~~WFqNRR~R~k~~~~~~ 216 (238)
++.|+..|+.+|+..|..++||+..+|++||..+ +|++.+|+|||||||+|+|+.....
T Consensus 10 Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr~~~~~ 89 (102)
T 2da6_A 10 RFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAFRQKLA 89 (102)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHHhhHhh
Confidence 3478999999999999999999999999999999 7999999999999999999887654
Q ss_pred c
Q psy14871 217 G 217 (238)
Q Consensus 217 ~ 217 (238)
.
T Consensus 90 ~ 90 (102)
T 2da6_A 90 M 90 (102)
T ss_dssp H
T ss_pred h
Confidence 3
No 69
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.51 E-value=4.7e-15 Score=108.46 Aligned_cols=52 Identities=10% Similarity=0.224 Sum_probs=49.3
Q ss_pred cccCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCccccccccchhhhhhhH
Q psy14871 159 YCFKEKSRSVLRDWYTH-----NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~-----~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~ 211 (238)
+.|+..|+..|+ .|.. ++||+..++++||..+||++.||+|||||||+|+|+
T Consensus 22 t~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 22 TKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred ccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 489999999999 7998 999999999999999999999999999999999874
No 70
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.50 E-value=2e-14 Score=106.95 Aligned_cols=59 Identities=39% Similarity=0.608 Sum_probs=54.2
Q ss_pred cccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhhcc
Q psy14871 159 YCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 217 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~~~ 217 (238)
.-|+.+++.+|+.||.. ++||+..+|.+||..+||++.||+|||+|+|+|.++....+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 46899999999999987 999999999999999999999999999999999998766543
No 71
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=3.2e-14 Score=100.32 Aligned_cols=51 Identities=16% Similarity=0.306 Sum_probs=48.4
Q ss_pred cccCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCccccccccchhhhhh
Q psy14871 159 YCFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRD 209 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~-~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~ 209 (238)
+.|+.+|+.+|+.+|+. ++||+...++.||.+|||++++|++||||+|--.
T Consensus 12 T~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 12 TKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 48999999999999999 9999999999999999999999999999999654
No 72
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.43 E-value=5.6e-14 Score=106.70 Aligned_cols=55 Identities=31% Similarity=0.556 Sum_probs=51.4
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHH------------------hC---CCccccccccchhhhhhhHHH
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEA------------------TG---LTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~------------------lg---Ls~~qV~~WFqNRR~R~k~~~ 213 (238)
+.|+..|+.+|+.+|..++||+..++++||.. +| |++.+|++||||||+++|+..
T Consensus 14 t~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k~ 89 (99)
T 1lfb_A 14 FKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRH 89 (99)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC
T ss_pred cCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHhc
Confidence 48999999999999999999999999999999 88 999999999999999886543
No 73
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.41 E-value=6e-14 Score=115.19 Aligned_cols=58 Identities=26% Similarity=0.387 Sum_probs=52.7
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHh
Q psy14871 157 TSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 214 (238)
Q Consensus 157 t~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~ 214 (238)
.++.|+..|+..|+.+|..++||+..++..||..+||++.||+|||||||+|+|+...
T Consensus 100 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 100 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 3458999999999999999999999999999999999999999999999999886443
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=9.8e-13 Score=93.18 Aligned_cols=46 Identities=30% Similarity=0.537 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhh
Q psy14871 163 EKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208 (238)
Q Consensus 163 ~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R 208 (238)
.+|+.+|+.+|..|++|+.+++..||..+||+.++|++||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4569999999999999999999999999999999999999999974
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.18 E-value=2.9e-12 Score=108.15 Aligned_cols=54 Identities=30% Similarity=0.533 Sum_probs=50.6
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCccccccccchhhhhhhH
Q psy14871 158 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATG---------------------LTTTQVSNWFKNRRQRDRA 211 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lg---------------------Ls~~qV~~WFqNRR~R~k~ 211 (238)
++.|+..|+.+|+.+|..++||+..+|++||..++ |++.+|+|||+|||++++.
T Consensus 119 R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 119 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 34899999999999999999999999999999999 9999999999999999764
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.11 E-value=2.7e-11 Score=103.79 Aligned_cols=53 Identities=30% Similarity=0.575 Sum_probs=49.2
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCccccccccchhhhhh
Q psy14871 157 TSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATG---------------------LTTTQVSNWFKNRRQRD 209 (238)
Q Consensus 157 t~~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lg---------------------Ls~~qV~~WFqNRR~R~ 209 (238)
.++.|+..|+.+|+.+|..++||+..+|++||..+| |++.+|+|||+|||++.
T Consensus 145 ~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 145 NRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 345899999999999999999999999999999988 89999999999999875
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.11 E-value=2.1e-11 Score=111.03 Aligned_cols=51 Identities=29% Similarity=0.557 Sum_probs=49.1
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhh
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k 210 (238)
.|+..++..|++.|..++||+..+|.+||..+||+++||+|||||||+|+|
T Consensus 371 ~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 371 AISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp SSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 678899999999999999999999999999999999999999999999976
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.32 E-value=1.5e-07 Score=58.53 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.6
Q ss_pred cccccccchhhhhhhHHHhhc
Q psy14871 196 TQVSNWFKNRRQRDRAAEQKD 216 (238)
Q Consensus 196 ~qV~~WFqNRR~R~k~~~~~~ 216 (238)
+||+|||||||+|+|+.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999987764
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.99 E-value=0.011 Score=41.47 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=37.1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccch
Q psy14871 166 RSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKN 204 (238)
Q Consensus 166 ~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqN 204 (238)
..+|+++|...+.........|+.+++|+..||+-||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 599999999999999999999999999999999999953
No 80
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=65.40 E-value=4.1 Score=30.84 Aligned_cols=38 Identities=29% Similarity=0.446 Sum_probs=25.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhhcc
Q psy14871 166 RSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 217 (238)
Q Consensus 166 ~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~~~ 217 (238)
..+++-.|+.||||+++-.. .==+|||.|||..+.+-.
T Consensus 15 vRiIkiLyQSNPyP~peGTR--------------qaRRNRRRRWR~RQrQI~ 52 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEGTR--------------QARRNRRRRWRERQRQIH 52 (115)
T ss_dssp HHHHHHHHHSSCCCCCCCCT--------------TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCch--------------hhhHhHHHHHHHHHHHHH
Confidence 45566668899999875211 111699999998776543
No 81
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=63.33 E-value=3.8 Score=28.52 Aligned_cols=37 Identities=32% Similarity=0.533 Sum_probs=24.9
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhhc
Q psy14871 166 RSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKD 216 (238)
Q Consensus 166 ~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~~ 216 (238)
..+++-.|+.||||+++-... | =.|||.||+..+.+-
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHHH
Confidence 456666788999998753211 1 158999998876653
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=57.43 E-value=5.1 Score=25.87 Aligned_cols=44 Identities=14% Similarity=0.307 Sum_probs=28.6
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccch
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKN 204 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqN 204 (238)
.|+.+........+... ........++|..+|++...|..|.+.
T Consensus 5 ~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 5 IFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 45665555444444433 221223568999999999999999754
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=56.54 E-value=11 Score=26.28 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=37.9
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhh
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 215 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~ 215 (238)
.+++.++.+|.-.|.... .-.++|..+|++...|+.+...-|.+.|+....
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 87 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQE 87 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888877654332 356899999999999999998877777765443
No 84
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=50.81 E-value=15 Score=26.97 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=35.2
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhh
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R 208 (238)
..|+.+++..+-..+..++.... .++|..+|++...|..|.+++...
T Consensus 6 ~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 6 RQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred eeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 36788887777667655665543 368999999999999999776654
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=43.26 E-value=15 Score=21.38 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=26.1
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccch
Q psy14871 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKN 204 (238)
Q Consensus 161 fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqN 204 (238)
++..++..+...+... + ...++|..+|++...|..|.+.
T Consensus 6 l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 6 LSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 4555554444444332 2 2567899999999999999854
No 86
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=42.97 E-value=8.4 Score=23.07 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCccccccccchhh
Q psy14871 184 KRELAEATGLTTTQVSNWFKNRR 206 (238)
Q Consensus 184 r~~LA~~lgLs~~qV~~WFqNRR 206 (238)
..++|..+|++...|..|++...
T Consensus 24 ~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp HHHHHHTTSCCHHHHHHHSCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHcc
Confidence 56789999999999999996543
No 87
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=42.39 E-value=19 Score=23.14 Aligned_cols=47 Identities=13% Similarity=0.018 Sum_probs=34.6
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhH
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~ 211 (238)
.+++.++.+|...|... + .-.++|..+|++...|+.+...-+.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g-~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-L----SYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-C----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46777888888776433 1 34688999999999999988766655553
No 88
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=41.37 E-value=23 Score=26.23 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=37.0
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHHhh
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 215 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~~~ 215 (238)
.+++.++.++. .|.. .+ .-.++|..+|++...|+++...-|.+.|+.-..
T Consensus 109 ~L~~~~r~v~~-~~~~-g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-GY----SYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp HSCHHHHHHHH-HHTT-TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888 4432 22 356799999999999999988777777765543
No 89
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=38.32 E-value=20 Score=25.28 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=33.5
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhh
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k 210 (238)
.+++.++.+|.-.+.. + ...++|..+|++...|+.+..+-+.|.+
T Consensus 27 ~Lt~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLLSEG--L----TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHHHTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 5778888888876432 2 2368999999999999998876665544
No 90
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=37.87 E-value=23 Score=25.57 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=32.6
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhh
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R 208 (238)
.+++.++.+|.-.+..- .-.++|..+|++...|+.+..+-+.|
T Consensus 34 ~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 34 RLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 57888899997765322 23789999999999999987655544
No 91
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=35.80 E-value=33 Score=23.35 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=34.4
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhh
Q psy14871 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210 (238)
Q Consensus 159 ~~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k 210 (238)
..+++.++.+|.-++. .+ .-.++|..+|++...|+.+..+-+.|.+
T Consensus 20 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--GL----PNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4688999999987432 22 3568899999999999988776555544
No 92
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=35.52 E-value=28 Score=22.96 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=34.9
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhh
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k 210 (238)
.+++.++.+|...|..... ....-.++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4678889999888852100 0112358899999999999998766665554
No 93
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=34.57 E-value=39 Score=24.85 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=37.3
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
.+++.++.++...|...- .-.++|..+|++...|+.|...-|.+.+...
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 467777888887765431 3468899999999999999988777766543
No 94
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=32.59 E-value=96 Score=23.22 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=32.9
Q ss_pred hhHhHHhhhhhccCchhHHHHHHhcCCCcccCCcchHHHHHHHHHHhhhccHHHHHHHHhcCC
Q psy14871 42 EQVACVCEVLQQSGNIERLGRFLWSLPACEKLHKNESVLKAKAMVAFHRGNFKDLYRILESHQ 104 (238)
Q Consensus 42 ~q~~~vc~~l~~~gd~~~l~~f~~~lp~~~~~~~~e~vlra~a~v~~h~~~f~e~~~lLe~~~ 104 (238)
++-.||-+.|...|+ + |.|---|..-...+|+|.+++.+++...
T Consensus 24 qEA~tIAdwL~~~~~-~------------------E~v~lIR~sSLmNrG~Yq~Al~l~~~~c 67 (116)
T 2p58_C 24 EEANCIAEWLHLKGE-E------------------EAVQLIRLSSLMNRGDYASALQQGNKLA 67 (116)
T ss_dssp HHHHHHHHHHHHTTC-H------------------HHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhCCc-H------------------HHHHHHHHHHHHcchhHHHHHHhcCCCC
Confidence 445666666666555 2 6666678888888999999999998875
No 95
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=32.02 E-value=19 Score=23.42 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=35.2
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhH
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~ 211 (238)
.+++.++.+|...|..+.+- ...-.++|..+|++...|+.+...-+.+.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46788889998887321111 1224678999999999999987666655553
No 96
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=31.09 E-value=40 Score=23.19 Aligned_cols=40 Identities=15% Similarity=0.298 Sum_probs=26.7
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccch
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKN 204 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqN 204 (238)
.|+.+........+... . ...++|..+|++...|..|.+.
T Consensus 22 ~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 22 SLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 45666544444444432 2 2567899999999999999743
No 97
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=30.95 E-value=28 Score=22.53 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=32.6
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhh
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRD 209 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~ 209 (238)
.+++.++.+|..++ ..+ ...++|..+|++...|+.+..+-+.+.
T Consensus 11 ~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 11 LLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 57888889987742 233 346799999999999998886655443
No 98
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=30.50 E-value=24 Score=23.36 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=32.5
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhh
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k 210 (238)
.+++.++.+|.-++ ..+ ...++|..+|++...|+.+..+-+.|.+
T Consensus 16 ~L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 46777888887743 222 2358999999999999988876665544
No 99
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=29.72 E-value=34 Score=23.77 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=27.2
Q ss_pred ccCHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhCCCccccccccch
Q psy14871 160 CFKEKSRSVLRDWYTHN-PYPSPREKRELAEATGLTTTQVSNWFKN 204 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~-~yPs~~~r~~LA~~lgLs~~qV~~WFqN 204 (238)
.|+.+.+...-..+... .+ ....+|..+|++...|..|.+.
T Consensus 5 ~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 5 TYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 45666554444444322 22 3568899999999999999754
No 100
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.13 E-value=51 Score=24.08 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=36.8
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
.+++.++.++...|...- .-.++|..+|++...|+.+...-|.+.+...
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 356677888877764331 3468899999999999999887777776643
No 101
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=27.80 E-value=38 Score=23.24 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=34.4
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhh
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k 210 (238)
.+++.++.+|...|....- ....-.++|..+|++...|+.+...-+.+.|
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4677888999888752100 0113467899999999999998766555554
No 102
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=27.64 E-value=1.2e+02 Score=22.74 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=26.3
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHH-HHHH------hCCCccccccccc
Q psy14871 161 FKEKSRSVLRDWYTHNPYPSPREKRE-LAEA------TGLTTTQVSNWFK 203 (238)
Q Consensus 161 fs~~q~~~Le~~F~~~~yPs~~~r~~-LA~~------lgLs~~qV~~WFq 203 (238)
++.+....+.+++..++..+..+... |... ..++...|..|++
T Consensus 84 ~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 84 ATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp CCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 34445677777777777666655433 3222 1467788888874
No 103
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=27.60 E-value=17 Score=22.78 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCccccccccchhh
Q psy14871 184 KRELAEATGLTTTQVSNWFKNRR 206 (238)
Q Consensus 184 r~~LA~~lgLs~~qV~~WFqNRR 206 (238)
..+||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 104
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=27.47 E-value=45 Score=26.38 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=37.1
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
.+++.++.+|...|... ..-.++|..+|++...|+.+...-|.+.|+.-
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 46777788888776432 23567899999999999999887777776543
No 105
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=26.97 E-value=93 Score=23.26 Aligned_cols=44 Identities=16% Similarity=0.379 Sum_probs=32.8
Q ss_pred hhHhHHhhhhhccCchhHHHHHHhcCCCcccCCcchHHHHHHHHHHhhhccHHHHHHHHhcCC
Q psy14871 42 EQVACVCEVLQQSGNIERLGRFLWSLPACEKLHKNESVLKAKAMVAFHRGNFKDLYRILESHQ 104 (238)
Q Consensus 42 ~q~~~vc~~l~~~gd~~~l~~f~~~lp~~~~~~~~e~vlra~a~v~~h~~~f~e~~~lLe~~~ 104 (238)
++-.||-+.|...|+ + |.|---|..-...+|+|.+++.+++...
T Consensus 23 qEA~tIAdwL~~~~~-~------------------E~v~lIR~sSLmNrG~Yq~Al~l~~~~c 66 (115)
T 2uwj_G 23 EEALCIAEWLERLGQ-D------------------EAARLIRISSLANQGRYQEALAFAHGNP 66 (115)
T ss_dssp HHHHHHHHHHHHTTC-H------------------HHHHHHHHHHHHHTTCHHHHHGGGTTCC
T ss_pred HHHHHHHHHHHhCCc-H------------------HHHHHHHHHHHHcchhHHHHHHhcCCCC
Confidence 445666666666555 2 6666678888888999999999998875
No 106
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=26.91 E-value=46 Score=25.53 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=35.1
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhhHHH
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k~~~ 213 (238)
.+++.++.+|.-.|... ..-.++|..+|++...|+++...-|.+.|+.-
T Consensus 140 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 46666777776655332 13468999999999999999887777766543
No 107
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=26.31 E-value=19 Score=22.72 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccccccccchhhh
Q psy14871 184 KRELAEATGLTTTQVSNWFKNRRQ 207 (238)
Q Consensus 184 r~~LA~~lgLs~~qV~~WFqNRR~ 207 (238)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 467999999999999999987553
No 108
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=26.30 E-value=17 Score=24.22 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccccccccchhh
Q psy14871 184 KRELAEATGLTTTQVSNWFKNRR 206 (238)
Q Consensus 184 r~~LA~~lgLs~~qV~~WFqNRR 206 (238)
..+||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998765
No 109
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=24.74 E-value=20 Score=22.83 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCccccccccchhhh
Q psy14871 184 KRELAEATGLTTTQVSNWFKNRRQ 207 (238)
Q Consensus 184 r~~LA~~lgLs~~qV~~WFqNRR~ 207 (238)
..+||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999987654
No 110
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=23.65 E-value=39 Score=23.30 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=32.6
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccchhhhhhh
Q psy14871 160 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~~~yPs~~~r~~LA~~lgLs~~qV~~WFqNRR~R~k 210 (238)
.+++.++.+|.-++. .+. -.++|..+|++...|+.+..+-+.|.+
T Consensus 29 ~Lt~~e~~vl~l~~~--g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLLIAK--GYS----NQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHHHHT--TCC----TTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHc--CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 577788888877543 222 347899999999999998876655543
No 111
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=23.60 E-value=23 Score=22.95 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCccccccccchhhh
Q psy14871 184 KRELAEATGLTTTQVSNWFKNRRQ 207 (238)
Q Consensus 184 r~~LA~~lgLs~~qV~~WFqNRR~ 207 (238)
..+||..+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987653
No 112
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.53 E-value=24 Score=22.77 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCccccccccchhhh
Q psy14871 184 KRELAEATGLTTTQVSNWFKNRRQ 207 (238)
Q Consensus 184 r~~LA~~lgLs~~qV~~WFqNRR~ 207 (238)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987654
No 113
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=21.82 E-value=39 Score=22.87 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=35.6
Q ss_pred ccCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCccccccccc
Q psy14871 160 CFKEKSRSVLRDWYTH-----NPYPSPREKRELAEATGLTTTQVSNWFK 203 (238)
Q Consensus 160 ~fs~~q~~~Le~~F~~-----~~yPs~~~r~~LA~~lgLs~~qV~~WFq 203 (238)
.++..+...|+..|.. +.+.+..+-..+...+|++..+|..+|.
T Consensus 20 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 6778888899999863 6788999988888888988877777663
No 114
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=21.63 E-value=26 Score=22.15 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccccccccchhhh
Q psy14871 184 KRELAEATGLTTTQVSNWFKNRRQ 207 (238)
Q Consensus 184 r~~LA~~lgLs~~qV~~WFqNRR~ 207 (238)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999877654
No 115
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=21.57 E-value=26 Score=22.71 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCccccccccchhh
Q psy14871 184 KRELAEATGLTTTQVSNWFKNRR 206 (238)
Q Consensus 184 r~~LA~~lgLs~~qV~~WFqNRR 206 (238)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46799999999999999997764
No 116
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=21.38 E-value=27 Score=22.69 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCccccccccchhh
Q psy14871 184 KRELAEATGLTTTQVSNWFKNRR 206 (238)
Q Consensus 184 r~~LA~~lgLs~~qV~~WFqNRR 206 (238)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999998764
No 117
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=21.17 E-value=69 Score=22.55 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=27.8
Q ss_pred ccCHHHHHH-HHHHHhhC-CCCCH-HHHHHHHHHhCCCccccccccc
Q psy14871 160 CFKEKSRSV-LRDWYTHN-PYPSP-REKRELAEATGLTTTQVSNWFK 203 (238)
Q Consensus 160 ~fs~~q~~~-Le~~F~~~-~yPs~-~~r~~LA~~lgLs~~qV~~WFq 203 (238)
.|+.+.+.. ++.+.... .+.+. .....+|..+|++...|..|.+
T Consensus 6 ~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 6 RFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 456665543 33333321 13332 4567899999999999999964
No 118
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=20.53 E-value=1.3e+02 Score=22.54 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=34.2
Q ss_pred ccccCHHHHHHHHHHH-hhCCCCCHHHHHHHH-HHh--CCCccccccccch
Q psy14871 158 SYCFKEKSRSVLRDWY-THNPYPSPREKRELA-EAT--GLTTTQVSNWFKN 204 (238)
Q Consensus 158 ~~~fs~~q~~~Le~~F-~~~~yPs~~~r~~LA-~~l--gLs~~qV~~WFqN 204 (238)
+..+|-++...+..++ ..++-.+..+....| ..+ +++...|..|.+|
T Consensus 9 R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 9 RRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp SSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 3478888899999999 677777655433322 267 7888899999866
Done!