RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14871
(238 letters)
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in
the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 68.8 bits (169), Expect = 1e-15
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
F + L + NPYPS E+ ELA+ GLT QV WF+NRR + +
Sbjct: 5 TRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLK 56
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 65.3 bits (160), Expect = 2e-14
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
F + L + NPYPS E+ ELA+ GL+ QV WF+NRR + +
Sbjct: 8 FTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 59.4 bits (145), Expect = 2e-12
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 175 HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
HNPYPS EK ELA TGL+ Q+ NWF N R+R
Sbjct: 7 HNPYPSEEEKSELARQTGLSRKQIDNWFINARRR 40
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 54.8 bits (133), Expect = 2e-10
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 176 NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
N YPS E+ ELA+ GLT QV WF+NRR + +
Sbjct: 22 NRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWK 56
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 39.0 bits (91), Expect = 6e-04
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 154 GEETSYCFKEKSR------SVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQ 207
+ +S ++ R VL + NPYPS + +L+ + V WF+N+R
Sbjct: 45 QDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRA 104
Query: 208 RDRAAEQKDGSVTRSVHS 225
+++
Sbjct: 105 KEKKKRSGKVEQRPGEEE 122
>gnl|CDD|222133 pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a
helix-turn-helix domain that probably binds to DNA.
Length = 63
Score = 30.6 bits (70), Expect = 0.11
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 184 KRELAEATGLTTTQVSNWFKNRRQR 208
K +LA ATG++ +S K +R
Sbjct: 13 KTDLARATGISRATLSRLKKGEAKR 37
>gnl|CDD|238045 cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators.
Length = 58
Score = 29.8 bits (68), Expect = 0.19
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 182 REKR-----ELAEATGLTTTQVSNWFKNRR 206
R+++ ELAE G++ + +S +R
Sbjct: 8 RKEKGLTQEELAEKLGVSRSTISRIENGKR 37
>gnl|CDD|197775 smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.
Length = 56
Score = 29.4 bits (67), Expect = 0.25
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 182 REKR-----ELAEATGLTTTQVSNWFKNRRQ 207
RE++ ELAE G++ + +S +R+
Sbjct: 6 REEKGLTQEELAEKLGVSRSTLSRIENGKRK 36
>gnl|CDD|152005 pfam11569, Homez, Homeodomain leucine-zipper encoding, Homez.
Homez contains two leucine zipper-like motifs and an
acidic domain and belongs to the superfamily of
homeobox-containing proteins. The presence of leucine
zippers suggests that Homez can function as a homo or
heterodimer in the nucleus. It is thought that the first
leucine zipper and homeodomain 1 (HD1)of Homez is
responsible for dimerisation and HD2 has a specific
DNA-binding activity. Homez is also thought to function
as a transcriptional repressor due to the acidic region
in its C-terminal domain. Homez is involved in a complex
regulatory network.
Length = 57
Score = 28.6 bits (64), Expect = 0.44
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 162 KEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
K L+D+Y + ++ L E +G++ QV +WF +R
Sbjct: 7 KPVDIQPLKDYYLQHHLLQEKDLDGLCEKSGMSYEQVRDWFASRMSE 53
>gnl|CDD|201759 pfam01381, HTH_3, Helix-turn-helix. This large family of DNA
binding helix-turn helix proteins includes Cro and CI.
Within the Neisseria gonorrhoeae phage associated
protein NGO0477, the full protein fold incorporates a
helix-turn-helix motif, but the function of this member
is unlikely to be that of a DNA-binding regulator, the
function of most other members, so is not necessarily
characteristic of the whole family.
Length = 55
Score = 27.9 bits (63), Expect = 0.72
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 182 REKR-----ELAEATGLTTTQVSNWFKNRR 206
RE+ ELAE G++ + +S +R
Sbjct: 5 REELGLSQEELAEKLGVSRSTISKIENGKR 34
>gnl|CDD|218541 pfam05292, MCD, Malonyl-CoA decarboxylase (MCD). This family
consists of several eukaryotic malonyl-CoA decarboxylase
(MLYCD) proteins. Malonyl-CoA, in addition to being an
intermediate in the de novo synthesis of fatty acids, is
an inhibitor of carnitine palmitoyltransferase I, the
enzyme that regulates the transfer of long-chain fatty
acyl-CoA into mitochondria, where they are oxidized.
After exercise, malonyl-CoA decarboxylase participates
with acetyl-CoA carboxylase in regulating the
concentration of malonyl-CoA in liver and adipose
tissue, as well as in muscle. Malonyl-CoA decarboxylase
is regulated by AMP-activated protein kinase (AMPK).
Length = 354
Score = 30.0 bits (67), Expect = 1.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 116 LWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEET 157
+ L A Y+ EK RG+ L +V + ++ L R W G+ +
Sbjct: 296 MRLCARYLLQEKKRGKALDSVANFHLQNGAMLERLNWMGDRS 337
>gnl|CDD|215304 PLN02554, PLN02554, UDP-glycosyltransferase family protein.
Length = 481
Score = 29.8 bits (67), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 38 GFTQEQVACVCEVLQQSGNIERLGRFLWSL 67
GF++EQ + L++SG+ RFLWSL
Sbjct: 286 GFSEEQAREIAIALERSGH-----RFLWSL 310
>gnl|CDD|182115 PRK09855, PRK09855, PTS system N-acetylgalactosamine-specific
transporter subunit IID; Provisional.
Length = 263
Score = 28.9 bits (65), Expect = 2.0
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 51 LQQSGNIERL--GRFLWS-LPACEKLHKNESVLKAKAM 85
LQ S N ER+ G F W+ LP +K++K++ + AM
Sbjct: 20 LQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAM 57
>gnl|CDD|223850 COG0779, COG0779, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 153
Score = 27.6 bits (62), Expect = 4.2
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 17 ITSSPNTSTSTASISPILPSFGFTQEQVACVCE----VLQQSGNIERLGRFLWSLPACEK 72
I SP T T I P++ S GF V V E VL+ I++ G +L C
Sbjct: 1 IMESPITEKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIY--IDKEGGV--TLDDCAD 56
Query: 73 LHK 75
+ +
Sbjct: 57 VSR 59
>gnl|CDD|236727 PRK10625, tas, putative aldo-keto reductase; Provisional.
Length = 346
Score = 27.9 bits (62), Expect = 5.3
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 178 YPSPREKRELAEATGLTTTQVSNWFKNRRQRDR--AAEQKDGSVTRSVHSFRVN 229
YP P E GLT T + NW R R++ A + G + R N
Sbjct: 53 YPVPPR----PETQGLTETYIGNWLAKRGSREKLIIASKVSGPSRNNDKGIRPN 102
>gnl|CDD|224314 COG1396, HipB, Predicted transcriptional regulators
[Transcription].
Length = 120
Score = 26.9 bits (58), Expect = 5.5
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 185 RELAEATGLTTTQVSNWFKNRRQRDRAA 212
ELAE G++ + +S + R +
Sbjct: 18 EELAERLGVSRSTISRIERGRSESPSLE 45
>gnl|CDD|224990 COG2079, PrpD, Uncharacterized protein involved in propionate
catabolism [General function prediction only].
Length = 453
Score = 27.3 bits (61), Expect = 8.2
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 139 YRVRRKFPLPRTIWDGEE---TSYCFKEKSRSVLRDWYTH 175
+R P +++GE + R Y
Sbjct: 220 LLAKRGETGPSDLFEGEWGFYDVLLSGDFFRRWRPLGYVM 259
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.131 0.404
Gapped
Lambda K H
0.267 0.0825 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,855,729
Number of extensions: 1075352
Number of successful extensions: 1011
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1010
Number of HSP's successfully gapped: 21
Length of query: 238
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 144
Effective length of database: 6,768,326
Effective search space: 974638944
Effective search space used: 974638944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)