RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14871
(238 letters)
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 64.4 bits (157), Expect = 1e-14
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 161 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
+ + +V+R W +PYP+ EK+++A T LT QV+NWF N R+R
Sbjct: 9 LPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 59
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 62.9 bits (153), Expect = 4e-14
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 154 GEETSYCFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
G + S K + L + YP + + L++ + ++ WF++RR +D+
Sbjct: 1 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 61.7 bits (150), Expect = 1e-13
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 161 FKEKSRSVLRDWY---THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 211
F +++ +L W+ NPY + L + T L+ Q+ NW NRR++++
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 58.1 bits (140), Expect = 3e-12
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 161 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 215
F +++ +L +++ NPYPS K ELA+ G+T +QVSNWF N+R R + K
Sbjct: 8 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 55.9 bits (135), Expect = 1e-11
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 167 SVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
++L +T +P + L++ + WF+ RR +++
Sbjct: 6 AILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 50
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 54.9 bits (132), Expect = 3e-11
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
++R+ L + + +EK E+A+ G+T QV WF N+R R +
Sbjct: 4 ISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 52.2 bits (125), Expect = 4e-10
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
EK LR Y NP P K +L E TGL+ + WF+N+R +D+
Sbjct: 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDK 59
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 51.4 bits (123), Expect = 5e-10
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 148 PRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 206
PR + F + R L + N PS + +++ GL + VSN+F N R
Sbjct: 1 PRLV---------FTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 50.9 bits (122), Expect = 1e-09
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
+ L + N Y + R + E+A A LT Q+ WF+NRR + +
Sbjct: 4 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWK 53
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 50.6 bits (121), Expect = 2e-09
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 215
F ++ L + YP + LA L ++ WF NRR + R E+
Sbjct: 8 FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 62
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 49.8 bits (119), Expect = 3e-09
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
F L + Y SP E++ LA+ L+ QV WF+NRR + R
Sbjct: 7 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWR 56
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 49.6 bits (118), Expect = 4e-09
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
+ R L + N P+ + +AE + + WF NRRQ+++
Sbjct: 5 IETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 54
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 49.1 bits (117), Expect = 5e-09
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
++ L + + PS +E +AE L V WF NRRQR++
Sbjct: 6 ISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREK 55
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 49.6 bits (118), Expect = 5e-09
Identities = 7/51 (13%), Positives = 14/51 (27%)
Query: 162 KEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212
KEK + + TG+ + W N + ++
Sbjct: 29 KEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 49.1 bits (117), Expect = 6e-09
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
F L + YP + ELA+ T LT ++ WF+NRR R R
Sbjct: 9 FSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLR 58
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 49.1 bits (117), Expect = 8e-09
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 215
+ + L + N Y + + E+A LT QV WF+NRR + + +
Sbjct: 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 48.0 bits (114), Expect = 1e-08
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 213
F + L + N YP + E+A T LT +V WFKNRR + R E
Sbjct: 8 FTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 60
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 48.8 bits (116), Expect = 1e-08
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 215
F + + L + N Y S + E+A L TQV WF+NRR + + E++
Sbjct: 34 FTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 88
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 46.8 bits (111), Expect = 2e-08
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 208
F + + L+ + N Y + R +++L+ GL Q+ WF+N R +
Sbjct: 6 FSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 46.8 bits (111), Expect = 3e-08
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
+ + L Y N + + ++R+++ AT L+ Q++ WF+NRR +++
Sbjct: 8 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEK 57
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 47.0 bits (111), Expect = 4e-08
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 161 FKEKSRS---VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 215
FKEK+ VL+ + ++ + E L T LT ++ WF +++ E+K
Sbjct: 8 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEK 65
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 46.3 bits (109), Expect = 9e-08
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 21/75 (28%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEAT---------------------GLTTTQVS 199
+ S+ +L Y PS E+ L E +T +V
Sbjct: 4 WGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 63
Query: 200 NWFKNRRQRDRAAEQ 214
NWF NRR+ + +
Sbjct: 64 NWFANRRKEEAFRHK 78
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 44.9 bits (106), Expect = 1e-07
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
F L + Y S + ELA L + + WF+NRR +D+
Sbjct: 6 FTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDK 55
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 45.8 bits (108), Expect = 1e-07
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 159 YCFKEKSRSVLRDWYTHNPYPSPREKRELAE---------------ATGLTTTQVSNWFK 203
+ ++++ +V+ ++ N YP ++ E+A +T+ +V NWF
Sbjct: 5 FTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFA 64
Query: 204 NRRQRDRAAEQKDGSVTRS 222
NRR+ + ++ S
Sbjct: 65 NRRKEIK-RRANIAAILES 82
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 45.4 bits (107), Expect = 1e-07
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
+ + R L + P PS ++ +A GL V WF NRRQ+ +
Sbjct: 15 IENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGK 64
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 44.9 bits (106), Expect = 2e-07
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
F + L + Y S E+ LA LT TQV WF+N R + +
Sbjct: 9 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 58
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 43.5 bits (102), Expect = 7e-07
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 162 KEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
E + + YP L+ L + +F+N+R +
Sbjct: 16 LEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 43.0 bits (101), Expect = 1e-06
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR--AAEQKDGS 218
F + L + Y + +L+ L T QV WFKNRR+R + + + KD S
Sbjct: 8 FTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQS 67
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 42.6 bits (100), Expect = 1e-06
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 210
F L + Y S E+ E + + LT TQV WF+NRR + +
Sbjct: 7 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 56
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 42.0 bits (98), Expect = 3e-06
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGS 218
F + L + Y S E+ LA LT TQV WF+N R + + A+ + G
Sbjct: 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGY 73
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 41.1 bits (96), Expect = 5e-06
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 154 GEETSYCFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 212
G E + E +L + N +P P +A GLT Q WFK R R +
Sbjct: 1 GSEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60
Query: 213 E 213
E
Sbjct: 61 E 61
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 38.2 bits (88), Expect = 6e-05
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 161 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 215
++ ++L+ ++ + + ++L + TGL ++ WF + R + + K
Sbjct: 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding
protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 27.1 bits (60), Expect = 0.42
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 184 KRELAEATGLTTTQVSNWFKNRRQRDRAAEQK-DGSVTR 221
K E+A + + +S KN+R + + S R
Sbjct: 28 KGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCR 66
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 62
Score = 26.7 bits (59), Expect = 0.62
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 182 REKR-----ELAEATGLTTTQVSNWFKNRRQRDRAA 212
R E + + + +W + R + D+ A
Sbjct: 8 RRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPA 43
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 28.0 bits (62), Expect = 0.96
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 13/92 (14%)
Query: 32 PILPSFGFTQEQVACVCEVLQQSGNIERLGRFLWSL-PACEKLHKNESVL-----KAKAM 85
P L T + + + + + R + + + +++ S L K
Sbjct: 4 PKLEDGKVTISFMKELMQWYKDQKKLHR--KCAYQILVQVKEVLSKLSTLVETTLKETEK 61
Query: 86 VAF----HRGNFKDLYRILESHQFSPHNHPKL 113
+ H G F DL I E + +P +
Sbjct: 62 ITVCGDTH-GQFYDLLNIFELNGLPSETNPYI 92
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain
{Bacillus subtilis [TaxId: 1423]}
Length = 68
Score = 25.1 bits (55), Expect = 2.6
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 185 RELAEATGLTTTQVSNWFKNRR 206
ELAE G+ + +S+ +N +
Sbjct: 18 SELAEKAGVAKSYLSSIERNLQ 39
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus
caldolyticus [TaxId: 1394]}
Length = 77
Score = 24.8 bits (54), Expect = 3.2
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 185 RELAEATGLTTTQVSNWFKNRRQ 207
ELA+ GL T +S + R
Sbjct: 27 EELADLAGLHRTYISEVERGDRN 49
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal
domain {Nitrosomonas europaea [TaxId: 915]}
Length = 67
Score = 24.7 bits (54), Expect = 3.3
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 186 ELAEATGLTTTQVSNWFKNRRQRDRA 211
AEA G++ VS + + R
Sbjct: 19 TAAEALGISRRMVSYYRTAHKIIPRT 44
>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline
oxidase) {Streptomyces sp. [TaxId: 1931]}
Length = 290
Score = 25.7 bits (56), Expect = 4.7
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 90 RGNFKDLYRILESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGKYRVRRKF 145
R NF+D+ +L + HP WL +E K G V K R F
Sbjct: 224 RENFRDILFLLSKVHYKYDVHPSETYDWL----IEISKQAGDE-KMVVKAEQIRDF 274
>d1hehc_ b.2.2.1 (C:) Endo-1,4-beta xylanase D, xylan binding
domain, XBD {Cellulomonas fimi [TaxId: 1708]}
Length = 88
Score = 24.8 bits (54), Expect = 4.8
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 6 PSNHQILGSANITSSPNTSTSTASISPILPSFGFT 40
+ S N + ++ T TA + SFG T
Sbjct: 37 NGGQSVQSSWNAALTGSSGTVTARPNGSGNSFGVT 71
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 204
Score = 25.5 bits (56), Expect = 5.9
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 71 EKLH-KNESVLKAKA-MVAFHRGNFKDLYRILESHQFSPHNHPKLQALWL 118
+KLH + ++++K +A V GNFK+ + E P++H ++ L
Sbjct: 105 DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLL 154
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha
chain {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 670
Score = 25.8 bits (55), Expect = 6.4
Identities = 11/57 (19%), Positives = 18/57 (31%)
Query: 125 AEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSP 181
A RG L + +GEET + ++E ++ Y P
Sbjct: 597 AAFGRGHGHDLAPFDTYHEVRGLHWPVVEGEETRWRYREGFDPYVKPGEGLRFYGKP 653
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 24.0 bits (52), Expect = 7.5
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 21/66 (31%)
Query: 117 WLKAHYVEAE------------------KLRGRPLGAVGKYR-VRRKFP--LPRTIWDGE 155
WL +Y AE + + P+ A + +R F R +
Sbjct: 4 WLLDNYETAEGVSLPRSTLYNHYLLHSQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRG 63
Query: 156 ETSYCF 161
+ Y +
Sbjct: 64 NSKYHY 69
>d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Corn (Zea mays) [TaxId: 4577]}
Length = 224
Score = 25.1 bits (54), Expect = 7.8
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 57 IERLGRFLWSLPACEKLHKNESVLKAKAMVAFHRGNFKDLYRILESHQ 104
I+R+G C + + + F +GNF L++ +E ++
Sbjct: 182 IQRIG--------CMEKDEKGQEYQKGGCGGFGKGNFSQLFKSIEDYE 221
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 176
Score = 24.7 bits (53), Expect = 8.5
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 31 SPILPSFGFTQEQVACVCEVLQQSGNI 57
S ++ G V L GN+
Sbjct: 120 SKLVIEEGEKVWIVFVDIHALDDDGNL 146
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 191
Score = 24.8 bits (53), Expect = 8.8
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 31 SPILPSFGFTQEQVACVCEVLQQSGNI 57
+ ++ G + V VL GN+
Sbjct: 127 TKLVIEPGKSVWTVWLDVYVLDYGGNV 153
>d1ny722 b.121.4.2 (2:183-369) Comovirus coat proteins (VP37 and
VP23) {CPMV (Cowpea mosaic virus) [TaxId: 12264]}
Length = 187
Score = 24.8 bits (54), Expect = 8.9
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 200 NWFKNRRQRDRAAEQKDGSVTRSVHSFRVNIGGG 233
NW R + G T V ++IGGG
Sbjct: 7 NWLPLNRWMGKLT-FPQGV-TSEVRRMPLSIGGG 38
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
Length = 201
Score = 24.8 bits (53), Expect = 9.1
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 180 SPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGSVTR 221
S EL T T ++S+W+++ + G +TR
Sbjct: 9 SKEILEELQLNTKFTEEELSSWYQSFLKEC-----PSGRITR 45
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2
{Enterococcus faecalis [TaxId: 1351]}
Length = 66
Score = 23.3 bits (50), Expect = 9.5
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 38 GFTQEQVACVCEVLQQS-GNIERLGRFLWSLPACEKL 73
+Q ++A + EV +Q+ IE+ ++ SL K+
Sbjct: 14 KISQSELAALLEVSRQTINGIEK-NKYNPSLQLALKI 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.404
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 883,417
Number of extensions: 39534
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 53
Length of query: 238
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 155
Effective length of database: 1,268,006
Effective search space: 196540930
Effective search space used: 196540930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)