Query psy14872
Match_columns 414
No_of_seqs 332 out of 2540
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 22:58:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ecc_A Homeobox and leucine zi 99.6 6.9E-16 2.4E-20 121.1 5.5 62 337-398 6-67 (76)
2 2dmq_A LIM/homeobox protein LH 99.6 2.7E-15 9.4E-20 118.9 6.9 64 334-397 7-70 (80)
3 2dms_A Homeobox protein OTX2; 99.6 1.9E-15 6.5E-20 119.9 6.0 62 335-396 8-69 (80)
4 2cue_A Paired box protein PAX6 99.6 1.3E-15 4.3E-20 121.0 4.4 63 334-396 7-69 (80)
5 2dmn_A Homeobox protein TGIF2L 99.6 3.4E-15 1.2E-19 119.5 6.7 73 335-407 8-83 (83)
6 1du6_A PBX1, homeobox protein 99.5 2.9E-15 1E-19 113.8 4.1 56 146-201 5-63 (64)
7 2ecb_A Zinc fingers and homeob 99.5 8.3E-15 2.9E-19 118.6 6.5 58 340-397 17-74 (89)
8 2ecc_A Homeobox and leucine zi 99.5 2.3E-15 7.8E-20 118.2 2.9 57 148-204 7-63 (76)
9 2dmu_A Homeobox protein goosec 99.5 5.6E-15 1.9E-19 114.2 5.1 60 335-394 8-67 (70)
10 1uhs_A HOP, homeodomain only p 99.5 8.7E-15 3E-19 113.8 5.7 60 335-394 2-62 (72)
11 2e1o_A Homeobox protein PRH; D 99.5 8E-15 2.7E-19 113.4 5.3 60 335-394 8-67 (70)
12 2cra_A Homeobox protein HOX-B1 99.5 4.3E-15 1.5E-19 115.0 3.6 61 334-394 7-67 (70)
13 2h1k_A IPF-1, pancreatic and d 99.5 6.2E-15 2.1E-19 111.7 4.3 58 335-392 4-61 (63)
14 1ig7_A Homeotic protein MSX-1; 99.5 7.7E-15 2.6E-19 109.2 4.5 55 337-391 3-57 (58)
15 1zq3_P PRD-4, homeotic bicoid 99.5 1.3E-14 4.3E-19 111.7 5.7 61 336-396 4-64 (68)
16 1ahd_P Antennapedia protein mu 99.5 6E-15 2.1E-19 113.6 3.9 59 336-394 4-62 (68)
17 2hdd_A Protein (engrailed home 99.5 6.1E-15 2.1E-19 111.0 3.7 57 335-391 4-60 (61)
18 2l7z_A Homeobox protein HOX-A1 99.5 9.2E-15 3.1E-19 114.1 4.5 62 333-394 6-67 (73)
19 3a03_A T-cell leukemia homeobo 99.5 8.9E-15 3E-19 108.3 4.2 54 339-392 2-55 (56)
20 3k2a_A Homeobox protein MEIS2; 99.5 2.6E-15 8.9E-20 115.4 1.3 57 150-206 4-63 (67)
21 1k61_A Mating-type protein alp 99.5 3.2E-15 1.1E-19 112.1 1.7 53 149-201 3-58 (60)
22 1jgg_A Segmentation protein EV 99.5 9E-15 3.1E-19 109.7 4.0 57 336-392 3-59 (60)
23 3a02_A Homeobox protein arista 99.5 6.8E-15 2.3E-19 110.3 3.3 56 338-393 3-58 (60)
24 2dmn_A Homeobox protein TGIF2L 99.5 4.2E-15 1.4E-19 118.9 2.2 57 149-205 12-71 (83)
25 2cuf_A FLJ21616 protein; homeo 99.5 2.1E-14 7.1E-19 117.7 6.2 67 335-401 8-89 (95)
26 2djn_A Homeobox protein DLX-5; 99.5 6.8E-15 2.3E-19 113.8 3.0 60 335-394 8-67 (70)
27 2dmt_A Homeobox protein BARH-l 99.5 7.9E-15 2.7E-19 116.4 3.2 60 335-394 18-77 (80)
28 1x2n_A Homeobox protein pknox1 99.5 4.9E-15 1.7E-19 115.5 1.9 56 149-204 12-70 (73)
29 1ftt_A TTF-1 HD, thyroid trans 99.5 1.6E-14 5.6E-19 111.1 4.7 59 336-394 4-62 (68)
30 2xsd_C POU domain, class 3, tr 99.5 2.9E-14 9.8E-19 128.3 6.9 119 266-394 29-159 (164)
31 2da1_A Alpha-fetoprotein enhan 99.5 8.1E-15 2.8E-19 113.3 2.9 60 335-394 8-67 (70)
32 2da2_A Alpha-fetoprotein enhan 99.5 9.6E-15 3.3E-19 112.9 3.3 60 335-394 8-67 (70)
33 2hi3_A Homeodomain-only protei 99.5 2.8E-14 9.5E-19 111.3 5.8 59 336-394 4-63 (73)
34 2vi6_A Homeobox protein nanog; 99.5 8.8E-15 3E-19 110.5 2.8 57 336-392 5-61 (62)
35 2da4_A Hypothetical protein DK 99.5 1.1E-14 3.6E-19 115.6 3.3 60 335-394 9-72 (80)
36 1du6_A PBX1, homeobox protein 99.5 8.5E-15 2.9E-19 111.2 2.5 58 334-391 3-63 (64)
37 2k40_A Homeobox expressed in E 99.5 1.2E-14 4.2E-19 111.4 3.4 60 335-394 2-61 (67)
38 1nk2_P Homeobox protein VND; h 99.5 3.7E-14 1.3E-18 111.7 6.2 60 335-394 10-69 (77)
39 2cra_A Homeobox protein HOX-B1 99.5 1.7E-14 6E-19 111.5 4.1 56 149-204 12-67 (70)
40 1bw5_A ISL-1HD, insulin gene e 99.5 1.2E-14 4.2E-19 111.0 3.2 58 335-392 4-61 (66)
41 2da3_A Alpha-fetoprotein enhan 99.5 1.1E-14 3.6E-19 115.4 2.9 60 335-394 18-77 (80)
42 2cqx_A LAG1 longevity assuranc 99.5 6.5E-15 2.2E-19 114.7 1.6 66 138-203 2-68 (72)
43 1puf_A HOX-1.7, homeobox prote 99.5 2.8E-14 9.7E-19 112.4 5.1 60 335-394 14-73 (77)
44 1puf_B PRE-B-cell leukemia tra 99.5 2.3E-14 7.8E-19 111.7 4.6 60 336-395 3-65 (73)
45 1akh_A Protein (mating-type pr 99.5 8.8E-15 3E-19 110.0 2.1 52 149-200 10-61 (61)
46 1akh_A Protein (mating-type pr 99.5 1.5E-14 5.1E-19 108.7 3.3 55 336-390 7-61 (61)
47 2ly9_A Zinc fingers and homeob 99.5 2.3E-14 8E-19 111.9 4.5 62 333-394 5-66 (74)
48 2djn_A Homeobox protein DLX-5; 99.5 2.1E-14 7.2E-19 111.0 4.2 57 148-204 11-67 (70)
49 3a01_A Homeodomain-containing 99.5 4.5E-14 1.5E-18 115.3 6.4 66 334-399 17-82 (93)
50 2l7z_A Homeobox protein HOX-A1 99.5 2E-14 6.8E-19 112.2 4.0 61 144-204 7-67 (73)
51 1fjl_A Paired protein; DNA-bin 99.5 3.2E-14 1.1E-18 113.1 5.1 60 335-394 19-78 (81)
52 2da5_A Zinc fingers and homeob 99.5 3.3E-14 1.1E-18 111.5 5.1 58 338-395 11-68 (75)
53 3rkq_A Homeobox protein NKX-2. 99.5 2.4E-14 8.2E-19 106.2 4.0 55 336-390 4-58 (58)
54 1bw5_A ISL-1HD, insulin gene e 99.5 2E-14 6.9E-19 109.8 3.6 55 149-203 8-62 (66)
55 1yz8_P Pituitary homeobox 2; D 99.5 1.2E-14 4.1E-19 111.8 2.3 60 335-394 4-63 (68)
56 2dn0_A Zinc fingers and homeob 99.5 2.6E-14 8.8E-19 112.3 3.9 59 148-206 12-70 (76)
57 1k61_A Mating-type protein alp 99.5 2.4E-14 8.1E-19 107.3 3.6 54 339-392 3-59 (60)
58 2ly9_A Zinc fingers and homeob 99.5 3.7E-14 1.3E-18 110.7 4.8 66 141-206 3-68 (74)
59 1x2n_A Homeobox protein pknox1 99.5 3.9E-14 1.3E-18 110.4 4.8 59 336-394 9-70 (73)
60 2da2_A Alpha-fetoprotein enhan 99.5 2.2E-14 7.6E-19 110.8 3.2 57 149-205 12-68 (70)
61 2k40_A Homeobox expressed in E 99.5 2E-14 6.7E-19 110.2 2.8 58 148-205 5-62 (67)
62 1b72_B Protein (PBX1); homeodo 99.5 1.4E-14 4.9E-19 116.6 2.1 60 336-395 3-65 (87)
63 1puf_B PRE-B-cell leukemia tra 99.5 1.3E-14 4.6E-19 113.0 1.9 57 149-205 6-65 (73)
64 2cqx_A LAG1 longevity assuranc 99.5 1.2E-14 4E-19 113.3 1.5 65 328-392 2-67 (72)
65 2ecb_A Zinc fingers and homeob 99.4 2.9E-14 1E-18 115.4 3.7 54 148-201 15-68 (89)
66 2dms_A Homeobox protein OTX2; 99.4 2.6E-14 8.9E-19 113.4 3.3 58 149-206 12-69 (80)
67 2dn0_A Zinc fingers and homeob 99.4 2.6E-14 9E-19 112.3 3.0 58 337-394 11-68 (76)
68 2lk2_A Homeobox protein TGIF1; 99.4 9.3E-15 3.2E-19 117.8 0.3 55 147-201 8-65 (89)
69 2da1_A Alpha-fetoprotein enhan 99.4 2E-14 6.8E-19 111.1 2.1 56 149-204 12-67 (70)
70 2dmu_A Homeobox protein goosec 99.4 1.6E-14 5.3E-19 111.7 1.5 56 149-204 12-67 (70)
71 2kt0_A Nanog, homeobox protein 99.4 2.4E-14 8.3E-19 114.5 2.6 61 334-394 22-82 (84)
72 1b8i_A Ultrabithorax, protein 99.4 3.2E-14 1.1E-18 113.2 3.2 59 335-393 21-79 (81)
73 1au7_A Protein PIT-1, GHF-1; c 99.4 4.9E-14 1.7E-18 124.4 4.7 57 336-392 89-145 (146)
74 3nau_A Zinc fingers and homeob 99.4 4.5E-14 1.5E-18 107.3 3.7 52 342-393 12-63 (66)
75 3a03_A T-cell leukemia homeobo 99.4 9.3E-15 3.2E-19 108.2 -0.2 52 150-201 3-54 (56)
76 3a02_A Homeobox protein arista 99.4 2E-14 6.7E-19 107.8 1.6 54 149-202 4-57 (60)
77 2dmp_A Zinc fingers and homeob 99.4 6.6E-14 2.3E-18 113.4 4.7 60 340-399 19-78 (89)
78 2e1o_A Homeobox protein PRH; D 99.4 1.8E-14 6.1E-19 111.4 1.0 56 148-203 11-66 (70)
79 2hdd_A Protein (engrailed home 99.4 2.1E-14 7.1E-19 108.0 1.3 53 149-201 8-60 (61)
80 2dmt_A Homeobox protein BARH-l 99.4 4.2E-14 1.4E-18 112.2 3.0 56 149-204 22-77 (80)
81 1le8_B Mating-type protein alp 99.4 3.5E-14 1.2E-18 113.5 2.6 55 150-204 8-65 (83)
82 3nau_A Zinc fingers and homeob 99.4 1.5E-14 5E-19 110.0 0.3 51 151-201 11-61 (66)
83 2r5y_A Homeotic protein sex co 99.4 4.4E-14 1.5E-18 114.1 3.2 58 335-392 29-86 (88)
84 2da5_A Zinc fingers and homeob 99.4 4.4E-14 1.5E-18 110.8 2.9 59 147-205 10-68 (75)
85 1ig7_A Homeotic protein MSX-1; 99.4 1.9E-14 6.4E-19 107.1 0.7 52 149-200 5-56 (58)
86 1mnm_C Protein (MAT alpha-2 tr 99.4 3.8E-14 1.3E-18 114.3 2.4 51 150-200 33-86 (87)
87 2vi6_A Homeobox protein nanog; 99.4 4.2E-14 1.4E-18 106.7 2.4 53 149-201 8-60 (62)
88 1uhs_A HOP, homeodomain only p 99.4 2.4E-14 8.3E-19 111.3 1.1 59 145-203 2-61 (72)
89 2m0c_A Homeobox protein arista 99.4 6.5E-14 2.2E-18 109.4 3.4 59 336-394 11-69 (75)
90 1jgg_A Segmentation protein EV 99.4 2.3E-14 8E-19 107.4 0.8 53 149-201 6-58 (60)
91 1b72_A Protein (homeobox prote 99.4 9.7E-14 3.3E-18 114.1 4.6 59 336-394 36-94 (97)
92 1wh5_A ZF-HD homeobox family p 99.4 5.8E-14 2E-18 111.5 3.1 57 335-391 18-78 (80)
93 3rkq_A Homeobox protein NKX-2. 99.4 4.4E-14 1.5E-18 104.8 2.0 52 149-200 7-58 (58)
94 2h1k_A IPF-1, pancreatic and d 99.4 2.7E-14 9.3E-19 108.1 0.7 53 149-201 8-60 (63)
95 2dmq_A LIM/homeobox protein LH 99.4 3E-14 1E-18 112.9 0.8 55 149-203 12-66 (80)
96 2kt0_A Nanog, homeobox protein 99.4 1.6E-13 5.3E-18 109.8 4.7 55 149-203 27-81 (84)
97 1b72_B Protein (PBX1); homeodo 99.4 3.5E-14 1.2E-18 114.3 0.9 55 149-203 6-63 (87)
98 1ahd_P Antennapedia protein mu 99.4 3.3E-14 1.1E-18 109.4 0.6 57 149-205 7-63 (68)
99 2da3_A Alpha-fetoprotein enhan 99.4 4.4E-14 1.5E-18 111.8 1.3 55 150-204 23-77 (80)
100 2e19_A Transcription factor 8; 99.4 1.2E-13 4E-18 105.2 3.5 53 149-201 8-60 (64)
101 3nar_A ZHX1, zinc fingers and 99.4 9.9E-14 3.4E-18 113.9 3.1 60 334-393 25-84 (96)
102 1ftt_A TTF-1 HD, thyroid trans 99.4 6.4E-14 2.2E-18 107.7 1.8 57 149-205 7-63 (68)
103 1mnm_C Protein (MAT alpha-2 tr 99.4 1.8E-13 6.2E-18 110.3 4.3 54 337-390 30-86 (87)
104 1e3o_C Octamer-binding transcr 99.4 5.3E-13 1.8E-17 119.5 7.8 59 334-392 101-159 (160)
105 1wh5_A ZF-HD homeobox family p 99.4 2.2E-13 7.4E-18 108.3 4.4 52 150-201 23-78 (80)
106 2da4_A Hypothetical protein DK 99.4 3.7E-14 1.3E-18 112.5 -0.1 55 149-203 13-71 (80)
107 1le8_B Mating-type protein alp 99.4 7.8E-14 2.7E-18 111.5 1.7 55 339-393 7-64 (83)
108 1wh7_A ZF-HD homeobox family p 99.4 1.1E-13 3.8E-18 109.9 1.9 57 334-391 17-78 (80)
109 1yz8_P Pituitary homeobox 2; D 99.4 3.7E-14 1.3E-18 109.0 -1.0 55 149-203 8-62 (68)
110 2l9r_A Homeobox protein NKX-3. 99.4 2E-13 6.7E-18 105.4 3.1 56 150-205 10-65 (69)
111 3k2a_A Homeobox protein MEIS2; 99.4 2.2E-13 7.6E-18 104.5 3.3 54 340-393 4-60 (67)
112 2cue_A Paired box protein PAX6 99.4 8.8E-14 3E-18 110.3 1.0 53 149-201 12-64 (80)
113 1zq3_P PRD-4, homeotic bicoid 99.4 1.1E-13 3.9E-18 106.3 1.5 53 149-201 7-59 (68)
114 2dmp_A Zinc fingers and homeob 99.4 2.2E-13 7.6E-18 110.3 3.2 58 148-205 17-74 (89)
115 2hi3_A Homeodomain-only protei 99.4 1E-13 3.5E-18 108.1 1.0 56 148-203 6-62 (73)
116 1fjl_A Paired protein; DNA-bin 99.4 9.7E-14 3.3E-18 110.3 0.9 52 150-201 24-75 (81)
117 2e19_A Transcription factor 8; 99.4 2.3E-13 7.9E-18 103.5 3.0 52 340-391 9-60 (64)
118 2da6_A Hepatocyte nuclear fact 99.4 6.5E-13 2.2E-17 109.7 5.8 64 334-397 6-90 (102)
119 2l9r_A Homeobox protein NKX-3. 99.3 2.1E-13 7E-18 105.3 2.3 55 340-394 10-64 (69)
120 1puf_A HOX-1.7, homeobox prote 99.3 2.1E-13 7.3E-18 107.3 2.4 53 149-201 18-70 (77)
121 1x2m_A LAG1 longevity assuranc 99.3 2.2E-13 7.5E-18 103.4 2.4 52 153-204 9-61 (64)
122 3l1p_A POU domain, class 5, tr 99.3 5.4E-13 1.8E-17 118.9 5.3 57 336-392 98-154 (155)
123 1nk2_P Homeobox protein VND; h 99.3 1.6E-13 5.6E-18 108.0 1.5 53 149-201 14-66 (77)
124 2m0c_A Homeobox protein arista 99.3 3.1E-13 1.1E-17 105.5 3.1 56 149-204 14-69 (75)
125 1b8i_A Ultrabithorax, protein 99.3 2E-13 6.7E-18 108.7 1.4 54 149-202 25-78 (81)
126 3nar_A ZHX1, zinc fingers and 99.3 3.2E-13 1.1E-17 110.8 2.4 56 148-203 29-84 (96)
127 3a01_A Homeodomain-containing 99.3 2.7E-13 9.3E-18 110.7 1.8 55 149-203 22-76 (93)
128 2r5y_A Homeotic protein sex co 99.3 3.3E-13 1.1E-17 108.9 1.8 54 149-202 33-86 (88)
129 1wi3_A DNA-binding protein SAT 99.3 9.4E-13 3.2E-17 100.1 4.1 56 335-390 8-64 (71)
130 1wh7_A ZF-HD homeobox family p 99.3 1.1E-12 3.9E-17 104.1 4.6 52 149-201 22-78 (80)
131 2cuf_A FLJ21616 protein; homeo 99.3 2.2E-13 7.6E-18 111.5 0.2 55 149-203 12-81 (95)
132 1x2m_A LAG1 longevity assuranc 99.3 4.3E-13 1.5E-17 101.8 1.1 50 343-392 9-59 (64)
133 2lk2_A Homeobox protein TGIF1; 99.3 1.8E-12 6E-17 104.5 4.7 56 339-394 10-68 (89)
134 3d1n_I POU domain, class 6, tr 99.3 1.4E-12 4.8E-17 115.6 3.6 56 336-391 95-150 (151)
135 1b72_A Protein (homeobox prote 99.3 5.9E-13 2E-17 109.4 0.6 54 148-201 38-91 (97)
136 2d5v_A Hepatocyte nuclear fact 99.2 1.9E-12 6.7E-17 116.1 3.2 59 147-205 100-158 (164)
137 1lfb_A Liver transcription fac 99.2 1.2E-12 4.2E-17 107.9 1.6 60 335-394 10-90 (99)
138 1wi3_A DNA-binding protein SAT 99.2 2.7E-12 9.4E-17 97.5 3.2 52 150-201 13-65 (71)
139 2xsd_C POU domain, class 3, tr 99.2 1.8E-12 6.1E-17 116.5 1.8 56 150-205 105-160 (164)
140 3d1n_I POU domain, class 6, tr 99.2 2.2E-12 7.6E-17 114.3 2.3 52 150-201 99-150 (151)
141 2d5v_A Hepatocyte nuclear fact 99.2 3E-12 1E-16 114.9 2.5 61 334-394 97-157 (164)
142 1lfb_A Liver transcription fac 99.2 5.1E-12 1.7E-16 104.3 3.1 56 149-204 14-90 (99)
143 1au7_A Protein PIT-1, GHF-1; c 99.2 5.7E-12 2E-16 111.1 3.0 53 150-202 93-145 (146)
144 1e3o_C Octamer-binding transcr 99.1 8.1E-12 2.8E-16 111.7 2.2 54 149-202 106-159 (160)
145 2da6_A Hepatocyte nuclear fact 99.1 1.1E-11 3.8E-16 102.3 1.5 53 149-201 11-84 (102)
146 3l1p_A POU domain, class 5, tr 99.1 1.3E-11 4.4E-16 109.9 0.7 53 149-201 101-153 (155)
147 2da7_A Zinc finger homeobox pr 99.1 3.6E-11 1.2E-15 91.9 2.2 47 153-199 14-60 (71)
148 2da7_A Zinc finger homeobox pr 99.1 5.8E-11 2E-15 90.8 3.1 47 343-389 14-60 (71)
149 1ic8_A Hepatocyte nuclear fact 98.9 1.2E-10 4.2E-15 107.0 -0.1 57 335-391 116-193 (194)
150 2h8r_A Hepatocyte nuclear fact 98.9 4.4E-10 1.5E-14 104.7 2.9 51 149-199 147-218 (221)
151 1mh3_A Maltose binding-A1 home 98.9 4.4E-10 1.5E-14 113.0 3.2 51 150-200 371-421 (421)
152 2h8r_A Hepatocyte nuclear fact 98.9 7.2E-10 2.5E-14 103.3 2.9 56 334-389 142-218 (221)
153 1ic8_A Hepatocyte nuclear fact 98.8 2.7E-10 9.1E-15 104.8 -0.3 52 149-200 120-192 (194)
154 1mh3_A Maltose binding-A1 home 98.7 2E-09 6.8E-14 108.2 2.3 52 339-390 370-421 (421)
155 2nzz_A Penetratin conjugated G 98.0 2E-06 6.8E-11 57.8 1.6 20 376-395 1-20 (37)
156 2nzz_A Penetratin conjugated G 97.2 4.1E-05 1.4E-09 51.3 -0.5 20 186-205 1-20 (37)
157 2ys9_A Homeobox and leucine zi 96.2 0.0029 9.8E-08 48.1 3.2 39 156-194 18-56 (70)
158 2ys9_A Homeobox and leucine zi 94.4 0.015 5.2E-07 44.1 1.9 40 345-384 17-56 (70)
159 1hlv_A CENP-B, major centromer 50.1 9.2 0.00031 31.2 2.7 46 149-197 6-51 (131)
160 2pmy_A RAS and EF-hand domain- 47.5 6.2 0.00021 29.9 1.2 47 148-194 18-69 (91)
161 2glo_A Brinker CG9653-PA; prot 47.5 6.4 0.00022 27.8 1.2 45 150-195 5-49 (59)
162 2lv7_A Calcium-binding protein 40.6 24 0.00083 27.5 3.7 48 147-194 26-80 (100)
163 1jko_C HIN recombinase, DNA-in 37.1 14 0.00049 24.2 1.6 41 151-196 6-46 (52)
164 1k78_A Paired box protein PAX5 34.2 28 0.00095 28.8 3.3 43 149-196 31-73 (149)
165 3c57_A Two component transcrip 33.5 12 0.00042 29.1 0.9 47 150-202 27-73 (95)
166 1tc3_C Protein (TC3 transposas 33.2 26 0.00089 22.4 2.4 42 150-196 5-46 (51)
167 1je8_A Nitrate/nitrite respons 32.0 13 0.00043 28.1 0.7 50 146-201 17-66 (82)
168 2p7v_B Sigma-70, RNA polymeras 29.3 13 0.00046 26.7 0.4 51 150-201 5-55 (68)
169 2xi8_A Putative transcription 29.3 17 0.00057 25.2 0.9 23 174-196 17-39 (66)
170 1p4w_A RCSB; solution structur 28.5 15 0.00051 29.1 0.6 45 150-200 34-78 (99)
171 2r1j_L Repressor protein C2; p 28.2 18 0.00061 25.2 0.9 23 174-196 21-43 (68)
172 3hug_A RNA polymerase sigma fa 28.2 39 0.0013 25.7 2.9 50 340-394 37-86 (92)
173 1x3u_A Transcriptional regulat 28.1 15 0.00051 26.9 0.5 46 150-201 16-61 (79)
174 2glo_A Brinker CG9653-PA; prot 27.7 22 0.00076 24.9 1.3 44 340-384 5-48 (59)
175 1hlv_A CENP-B, major centromer 27.1 46 0.0016 26.7 3.4 48 339-389 6-53 (131)
176 1zug_A Phage 434 CRO protein; 26.9 18 0.00063 25.4 0.8 23 174-196 19-41 (71)
177 1fi6_A EH domain protein REPS1 26.3 31 0.0011 26.1 2.1 45 150-194 2-51 (92)
178 2jn6_A Protein CGL2762, transp 26.0 42 0.0014 25.7 2.8 43 150-196 5-48 (97)
179 3mzy_A RNA polymerase sigma-H 25.9 41 0.0014 27.4 2.9 49 341-395 110-158 (164)
180 1c07_A Protein (epidermal grow 25.1 32 0.0011 26.3 1.9 45 150-194 3-52 (95)
181 3bd1_A CRO protein; transcript 25.1 17 0.00057 26.8 0.2 23 174-196 14-36 (79)
182 3bs3_A Putative DNA-binding pr 24.8 22 0.00074 25.5 0.8 23 174-196 26-48 (76)
183 2rn7_A IS629 ORFA; helix, all 24.4 43 0.0015 26.1 2.7 47 150-196 6-55 (108)
184 1adr_A P22 C2 repressor; trans 24.3 23 0.00078 25.3 0.9 23 174-196 21-43 (76)
185 3omt_A Uncharacterized protein 23.8 24 0.00083 25.3 0.9 23 174-196 24-46 (73)
186 1r69_A Repressor protein CI; g 23.7 23 0.00079 24.7 0.8 23 174-196 17-39 (69)
187 2b5a_A C.BCLI; helix-turn-heli 23.6 25 0.00084 25.2 0.9 23 174-196 26-48 (77)
188 2rnj_A Response regulator prot 23.3 32 0.0011 26.2 1.6 46 150-201 29-74 (91)
189 3kz3_A Repressor protein CI; f 22.6 25 0.00084 25.8 0.8 23 174-196 28-50 (80)
190 2elh_A CG11849-PA, LD40883P; s 22.5 55 0.0019 24.7 2.8 41 150-195 22-62 (87)
191 1rzs_A Antirepressor, regulato 22.2 28 0.00096 24.7 1.0 19 174-192 13-31 (61)
192 3b7h_A Prophage LP1 protein 11 22.1 26 0.00089 25.2 0.8 23 174-196 23-45 (78)
193 1y7y_A C.AHDI; helix-turn-heli 21.5 29 0.00098 24.6 0.9 23 174-196 29-51 (74)
194 2k27_A Paired box protein PAX- 21.4 1.4E+02 0.0048 24.7 5.5 57 150-206 83-146 (159)
195 1fse_A GERE; helix-turn-helix 21.0 20 0.00067 25.7 -0.1 45 150-200 11-55 (74)
No 1
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=6.9e-16 Score=121.10 Aligned_cols=62 Identities=15% Similarity=0.309 Sum_probs=56.0
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHhccCC
Q psy14872 337 TSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGS 398 (414)
Q Consensus 337 ~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~~~~~ 398 (414)
.+..||.+|+.+|+.+|..++||+..++++||..+||+..||++||||+|+|+|+..-+-..
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w~~ 67 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFR 67 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSSTT
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999999999999999999999987544333
No 2
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-15 Score=118.95 Aligned_cols=64 Identities=25% Similarity=0.511 Sum_probs=58.3
Q ss_pred CCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHhccC
Q psy14872 334 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 397 (414)
Q Consensus 334 ~~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~~~~ 397 (414)
.++.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+......
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 3455678999999999999999999999999999999999999999999999999999876433
No 3
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=1.9e-15 Score=119.95 Aligned_cols=62 Identities=27% Similarity=0.476 Sum_probs=57.2
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHhcc
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKD 396 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~~~ 396 (414)
++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||+|+|+|+.....
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 8 RRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 45567899999999999999999999999999999999999999999999999999986543
No 4
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1.3e-15 Score=121.03 Aligned_cols=63 Identities=24% Similarity=0.459 Sum_probs=57.7
Q ss_pred CCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHhcc
Q psy14872 334 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKD 396 (414)
Q Consensus 334 ~~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~~~ 396 (414)
+++.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+..+..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 345567899999999999999999999999999999999999999999999999999976543
No 5
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.56 E-value=3.4e-15 Score=119.48 Aligned_cols=73 Identities=32% Similarity=0.471 Sum_probs=62.3
Q ss_pred CccccccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHhccCCCCcccccCC
Q psy14872 335 EETSYCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGSVHSFRVNIG 407 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~---n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~~~~~~~~~~~s~g 407 (414)
++.++.|+..|+.+|+.||.. ++||+..+++.||..+||+..||++||||+|+|+|+.........+...++|
T Consensus 8 rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~~~~~~~~~sG 83 (83)
T 2dmn_A 8 KKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDPSGPSSG 83 (83)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCCCCCCCCCCCC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhccCCCCCCCCC
Confidence 344568999999999999987 6999999999999999999999999999999999998776655555544443
No 6
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=2.9e-15 Score=113.76 Aligned_cols=56 Identities=34% Similarity=0.659 Sum_probs=51.8
Q ss_pred cccccCCHhHHHHHHHHh---hcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 146 ETSYCFKEKSRSVLRDWY---THNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 146 ~t~~~f~~~~~~~L~~~f---~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
.....|+.+|+.+|+.|| ..+|||+.+++..||..|||++.||.+||+|+|+|.++
T Consensus 5 r~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 5 IEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 344589999999999999 89999999999999999999999999999999998875
No 7
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=8.3e-15 Score=118.60 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=54.3
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHhccC
Q psy14872 340 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 397 (414)
Q Consensus 340 ~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~~~~ 397 (414)
.||..|+..|+.+|..++||+..++.+||..+||++.||+|||||||+|+++...+..
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhh
Confidence 6899999999999999999999999999999999999999999999999998655444
No 8
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=2.3e-15 Score=118.15 Aligned_cols=57 Identities=12% Similarity=0.341 Sum_probs=52.5
Q ss_pred cccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCC
Q psy14872 148 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTS 204 (414)
Q Consensus 148 ~~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~ 204 (414)
...|+.+|+.+|+++|..|+||+.+++++||+.|||++.||++||+|+|.|.|+...
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 347999999999999999999999999999999999999999999999998775433
No 9
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.6e-15 Score=114.21 Aligned_cols=60 Identities=25% Similarity=0.480 Sum_probs=56.0
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
++.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 8 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 8 RRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 345678999999999999999999999999999999999999999999999999998754
No 10
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.52 E-value=8.7e-15 Score=113.82 Aligned_cols=60 Identities=28% Similarity=0.416 Sum_probs=56.0
Q ss_pred CccccccCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 335 EETSYCFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~-n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
..+++.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 345678999999999999996 999999999999999999999999999999999999864
No 11
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=8e-15 Score=113.41 Aligned_cols=60 Identities=28% Similarity=0.473 Sum_probs=56.0
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
++.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 8 ~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 8 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 345668999999999999999999999999999999999999999999999999998755
No 12
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=4.3e-15 Score=114.95 Aligned_cols=61 Identities=23% Similarity=0.493 Sum_probs=56.1
Q ss_pred CCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 334 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 334 ~~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
.++.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 3455678999999999999999999999999999999999999999999999999997654
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.51 E-value=6.2e-15 Score=111.69 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=54.4
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHH
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 392 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~ 392 (414)
++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||+|+|+|+.
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 4 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 3456789999999999999999999999999999999999999999999999999986
No 14
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.51 E-value=7.7e-15 Score=109.17 Aligned_cols=55 Identities=29% Similarity=0.453 Sum_probs=52.8
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHH
Q psy14872 337 TSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 391 (414)
Q Consensus 337 ~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr 391 (414)
.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||+|+|+|+
T Consensus 3 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 3 PRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 4568999999999999999999999999999999999999999999999999986
No 15
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.51 E-value=1.3e-14 Score=111.72 Aligned_cols=61 Identities=26% Similarity=0.453 Sum_probs=56.9
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHhcc
Q psy14872 336 ETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKD 396 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~~~ 396 (414)
+.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||+|+|+|+.....
T Consensus 4 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 4 RTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 4567899999999999999999999999999999999999999999999999999987643
No 16
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.51 E-value=6e-15 Score=113.55 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=55.8
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 336 ETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
+.++.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 4 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 4 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 45678999999999999999999999999999999999999999999999999999865
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.51 E-value=6.1e-15 Score=110.98 Aligned_cols=57 Identities=25% Similarity=0.524 Sum_probs=52.4
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHH
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 391 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr 391 (414)
++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||+|+|+|+
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ---CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 345678999999999999999999999999999999999999999999999999985
No 18
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.50 E-value=9.2e-15 Score=114.07 Aligned_cols=62 Identities=23% Similarity=0.476 Sum_probs=57.3
Q ss_pred CCCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 333 DGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 333 ~~~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
.+++.++.|+..|+..|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 34566778999999999999999999999999999999999999999999999999998644
No 19
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.50 E-value=8.9e-15 Score=108.27 Aligned_cols=54 Identities=30% Similarity=0.474 Sum_probs=50.9
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHH
Q psy14872 339 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 392 (414)
Q Consensus 339 ~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~ 392 (414)
+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 468999999999999999999999999999999999999999999999999985
No 20
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=2.6e-15 Score=115.38 Aligned_cols=57 Identities=35% Similarity=0.648 Sum_probs=50.1
Q ss_pred cCCHhHHHHHHHHhh---cCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCCC
Q psy14872 150 CFKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTSTS 206 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~---~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~~ 206 (414)
.|+++++.+|+.||. .||||+.+++..||..|||+..||++||+|+|+|.++.....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 799999999999999 999999999999999999999999999999999988765543
No 21
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.50 E-value=3.2e-15 Score=112.07 Aligned_cols=53 Identities=25% Similarity=0.552 Sum_probs=50.4
Q ss_pred ccCCHhHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~---~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
..|+.+|+.+|+.||.. +|||+.+++..||..+||++.||.+||+|+|+|.++
T Consensus 3 ~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 47999999999999999 999999999999999999999999999999988765
No 22
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.50 E-value=9e-15 Score=109.68 Aligned_cols=57 Identities=25% Similarity=0.426 Sum_probs=53.8
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHH
Q psy14872 336 ETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 392 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~ 392 (414)
+.++.|+..|+..|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+.
T Consensus 3 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 3 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 345689999999999999999999999999999999999999999999999999974
No 23
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.50 E-value=6.8e-15 Score=110.35 Aligned_cols=56 Identities=30% Similarity=0.509 Sum_probs=50.5
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHH
Q psy14872 338 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 393 (414)
Q Consensus 338 ~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~ 393 (414)
++.|+..|+..|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+..
T Consensus 3 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp --CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 46899999999999999999999999999999999999999999999999999864
No 24
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.50 E-value=4.2e-15 Score=118.93 Aligned_cols=57 Identities=37% Similarity=0.589 Sum_probs=51.9
Q ss_pred ccCCHhHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTST 205 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~---~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~ 205 (414)
..|+.+|+.+|+.||.. ||||+.++|..||..|||++.||++||+|+|+|.++....
T Consensus 12 ~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 12 GNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp SSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 47999999999999987 6999999999999999999999999999999998764433
No 25
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=2.1e-14 Score=117.71 Aligned_cols=67 Identities=24% Similarity=0.555 Sum_probs=59.6
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------CCccccccccccchhHhHHHHhccCCC
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATG---------------LTTTQVSNWFKNRRQRDRAAEQKDGSV 399 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~g---------------L~~~qV~vWFqNrR~R~Kr~~~~~~~~ 399 (414)
++.++.|+..|+.+|+.+|..++||+..+++.||..+| |+..+|++||||||+|+|+........
T Consensus 8 rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~~~~~ 87 (95)
T 2cuf_A 8 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIAAIL 87 (95)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred CCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 45567899999999999999999999999999999999 999999999999999999987754333
Q ss_pred Cc
Q psy14872 400 HS 401 (414)
Q Consensus 400 ~~ 401 (414)
.+
T Consensus 88 ~~ 89 (95)
T 2cuf_A 88 ES 89 (95)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 26
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6.8e-15 Score=113.82 Aligned_cols=60 Identities=27% Similarity=0.460 Sum_probs=55.6
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
++.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 8 RKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 455678999999999999999999999999999999999999999999999999997643
No 27
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7.9e-15 Score=116.43 Aligned_cols=60 Identities=27% Similarity=0.467 Sum_probs=55.7
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
++.++.|+..|+.+|+.+|..++||+..++..||..+||++.||++||||+|+|+|+...
T Consensus 18 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 18 RRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 345678999999999999999999999999999999999999999999999999997644
No 28
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=4.9e-15 Score=115.49 Aligned_cols=56 Identities=32% Similarity=0.600 Sum_probs=51.8
Q ss_pred ccCCHhHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTS 204 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~---~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~ 204 (414)
..|+.+|+.+|+.||.. +|||+.+++..||..|||++.||.+||+|+|+|.++...
T Consensus 12 ~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 12 GVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 37999999999999986 999999999999999999999999999999998876544
No 29
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.49 E-value=1.6e-14 Score=111.06 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=55.5
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 336 ETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
+.++.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+|+|+..+
T Consensus 4 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 4 KRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp SSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 44568999999999999999999999999999999999999999999999999998755
No 30
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.48 E-value=2.9e-14 Score=128.26 Aligned_cols=119 Identities=21% Similarity=0.316 Sum_probs=77.6
Q ss_pred HHhcccChHHHHHHHhcCCCCCC----------CchHHHHHH--HHhhHHHHHhhcCCCCCCCCcCcccCCCCCCCcccC
Q psy14872 266 VAFHRGNFKDLYRILESHQFSPH----------NHPKLQALW--LKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWD 333 (414)
Q Consensus 266 ~~~~~~~~~~~~~ll~~~~f~~~----------~~~~lq~~w--~~~~~~~~e~~~g~~l~~~~~~r~R~~~p~P~~~~~ 333 (414)
..|++++.......+.+..|++. +...++.++ +...+.+++...+.+. ..+..... ..
T Consensus 29 lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~-~~~~~~~~---------~~ 98 (164)
T 2xsd_C 29 LGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPT-NLDKIAAQ---------GR 98 (164)
T ss_dssp TTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC--------------------------
T ss_pred cCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhccccCCCc-cccccccc---------cc
Confidence 44777777777888888777642 234455555 3444455544333321 11111110 11
Q ss_pred CCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 334 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 334 ~~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
.++.++.|+..|+..|+.+|..++||+..++..||..+||++.+|++||||||+|+|+..+
T Consensus 99 ~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 99 KRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred CCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 3345678999999999999999999999999999999999999999999999999998754
No 31
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.48 E-value=8.1e-15 Score=113.28 Aligned_cols=60 Identities=23% Similarity=0.509 Sum_probs=55.8
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
++.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 8 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 8 KRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 455678999999999999999999999999999999999999999999999999997644
No 32
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.48 E-value=9.6e-15 Score=112.86 Aligned_cols=60 Identities=28% Similarity=0.526 Sum_probs=55.5
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
++.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 8 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 8 RSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 345678999999999999999999999999999999999999999999999999997644
No 33
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.48 E-value=2.8e-14 Score=111.29 Aligned_cols=59 Identities=29% Similarity=0.383 Sum_probs=55.2
Q ss_pred ccccccCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 336 ETSYCFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F~~-n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
..++.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 4 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 4 QTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp SCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 34578999999999999995 999999999999999999999999999999999999864
No 34
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.48 E-value=8.8e-15 Score=110.45 Aligned_cols=57 Identities=25% Similarity=0.450 Sum_probs=52.4
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHH
Q psy14872 336 ETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 392 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~ 392 (414)
+.++.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+|+|+.
T Consensus 5 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 5 KMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ---CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 446789999999999999999999999999999999999999999999999999974
No 35
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-14 Score=115.65 Aligned_cols=60 Identities=15% Similarity=0.291 Sum_probs=55.6
Q ss_pred CccccccCHHHHHHHHHHHhhC----CCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHN----PYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n----~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
++.++.|+..|+.+|+.+|..+ +||+..+++.||..+||++.+|+|||||+|+|+|+...
T Consensus 9 rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 9 LQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 3456789999999999999999 99999999999999999999999999999999998643
No 36
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.48 E-value=8.5e-15 Score=111.18 Aligned_cols=58 Identities=38% Similarity=0.732 Sum_probs=53.9
Q ss_pred CCccccccCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHH
Q psy14872 334 GEETSYCFKEKSRSVLRDWY---THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 391 (414)
Q Consensus 334 ~~~~~~~ft~~q~~~L~~~F---~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr 391 (414)
+++.++.|+..|+.+|+.+| ..++||+..++..||..+||+..||++||+|+|+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 44566789999999999999 88999999999999999999999999999999999875
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-14 Score=111.36 Aligned_cols=60 Identities=23% Similarity=0.445 Sum_probs=55.4
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
++.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 345678999999999999999999999999999999999999999999999999997643
No 38
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.48 E-value=3.7e-14 Score=111.71 Aligned_cols=60 Identities=28% Similarity=0.453 Sum_probs=56.0
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
++.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 10 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 10 RKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 344668999999999999999999999999999999999999999999999999998765
No 39
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=1.7e-14 Score=111.49 Aligned_cols=56 Identities=18% Similarity=0.388 Sum_probs=52.8
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTS 204 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~ 204 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++...
T Consensus 12 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 12 IPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 48999999999999999999999999999999999999999999999999887554
No 40
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.47 E-value=1.2e-14 Score=110.99 Aligned_cols=58 Identities=33% Similarity=0.583 Sum_probs=54.5
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHH
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 392 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~ 392 (414)
++.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+.
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 4 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp SCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 3456789999999999999999999999999999999999999999999999999865
No 41
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-14 Score=115.43 Aligned_cols=60 Identities=22% Similarity=0.400 Sum_probs=55.7
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
++.++.|+.+|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 18 rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 18 KRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp TTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 345678999999999999999999999999999999999999999999999999997644
No 42
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.47 E-value=6.5e-15 Score=114.74 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=61.8
Q ss_pred CCcccCCCcccccCCHhHHHHHHHHh-hcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCC
Q psy14872 138 PRTIWDGEETSYCFKEKSRSVLRDWY-THNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNT 203 (414)
Q Consensus 138 P~t~~~g~~t~~~f~~~~~~~L~~~f-~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~ 203 (414)
|.++|.|..+..+++.+|+.+|+..| ..++||+..++..||..+||++.||.+||||+|.+.++..
T Consensus 2 P~~~~~g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 2 SSGSSGGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 67788898888899999999999999 9999999999999999999999999999999999888654
No 43
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.47 E-value=2.8e-14 Score=112.38 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=56.0
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||+|+|+|+..+
T Consensus 14 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 14 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 345668999999999999999999999999999999999999999999999999999765
No 44
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.47 E-value=2.3e-14 Score=111.68 Aligned_cols=60 Identities=38% Similarity=0.707 Sum_probs=55.3
Q ss_pred ccccccCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHhc
Q psy14872 336 ETSYCFKEKSRSVLRDWY---THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F---~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~~ 395 (414)
+.++.|+..|+.+|+.+| ..++||+..++..||..+||+..||++||+|+|+|+|+....
T Consensus 3 r~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 3 RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 345689999999999999 889999999999999999999999999999999999987553
No 45
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.47 E-value=8.8e-15 Score=109.99 Aligned_cols=52 Identities=25% Similarity=0.464 Sum_probs=47.8
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSS 200 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~ 200 (414)
..|+.+|+.+|+.+|..++||+.+++..||..+||++.||.+||+|+|.|.+
T Consensus 10 t~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 10 SSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 3799999999999999999999999999999999999999999999998754
No 46
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.47 E-value=1.5e-14 Score=108.73 Aligned_cols=55 Identities=27% Similarity=0.515 Sum_probs=48.4
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhH
Q psy14872 336 ETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~K 390 (414)
+.++.|+..|+.+|+.+|..++||+..++..||..+||+..||++||+|+|+|+|
T Consensus 7 r~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 7 KGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -----CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4567899999999999999999999999999999999999999999999999975
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.47 E-value=2.3e-14 Score=111.86 Aligned_cols=62 Identities=24% Similarity=0.387 Sum_probs=57.1
Q ss_pred CCCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 333 DGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 333 ~~~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
+....++.|+..|+..|+..|..++||+..+++.||..+||+..+|++||||+|+|+|+.+.
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 34456779999999999999999999999999999999999999999999999999998754
No 48
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.1e-14 Score=111.03 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=53.2
Q ss_pred cccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCC
Q psy14872 148 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTS 204 (414)
Q Consensus 148 ~~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~ 204 (414)
...|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++...
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 11 RTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp SCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 348999999999999999999999999999999999999999999999999887554
No 49
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.47 E-value=4.5e-14 Score=115.32 Aligned_cols=66 Identities=23% Similarity=0.410 Sum_probs=58.2
Q ss_pred CCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHhccCCC
Q psy14872 334 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGSV 399 (414)
Q Consensus 334 ~~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~~~~~~ 399 (414)
.++.++.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+|+|+......+.
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~ 82 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREA 82 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred CCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHH
Confidence 345567899999999999999999999999999999999999999999999999999987654443
No 50
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.47 E-value=2e-14 Score=112.15 Aligned_cols=61 Identities=18% Similarity=0.375 Sum_probs=55.1
Q ss_pred CCcccccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCC
Q psy14872 144 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTS 204 (414)
Q Consensus 144 g~~t~~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~ 204 (414)
+.++...|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 4444558999999999999999999999999999999999999999999999998886543
No 51
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.47 E-value=3.2e-14 Score=113.12 Aligned_cols=60 Identities=28% Similarity=0.495 Sum_probs=56.0
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
++.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 19 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 19 RRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 345678999999999999999999999999999999999999999999999999998754
No 52
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.3e-14 Score=111.50 Aligned_cols=58 Identities=26% Similarity=0.422 Sum_probs=54.3
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHhc
Q psy14872 338 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395 (414)
Q Consensus 338 ~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~~ 395 (414)
+..||..|+.+|+..|..++||+..++..||..+||+..+|++||||+|+|+|+..++
T Consensus 11 r~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 11 YKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 3468999999999999999999999999999999999999999999999999987653
No 53
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.46 E-value=2.4e-14 Score=106.20 Aligned_cols=55 Identities=31% Similarity=0.504 Sum_probs=52.0
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhH
Q psy14872 336 ETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~K 390 (414)
+.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|
T Consensus 4 r~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 4 KPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 4457899999999999999999999999999999999999999999999999975
No 54
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.46 E-value=2e-14 Score=109.79 Aligned_cols=55 Identities=29% Similarity=0.507 Sum_probs=52.0
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNT 203 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~ 203 (414)
..|+.+|+.+|+.+|..++||+.+++..||..+||++.||.+||+|+|.|.++..
T Consensus 8 t~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 8 TVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4899999999999999999999999999999999999999999999999988654
No 55
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.46 E-value=1.2e-14 Score=111.77 Aligned_cols=60 Identities=32% Similarity=0.490 Sum_probs=56.1
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
++.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 4 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 345678999999999999999999999999999999999999999999999999998765
No 56
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.6e-14 Score=112.34 Aligned_cols=59 Identities=24% Similarity=0.403 Sum_probs=54.4
Q ss_pred cccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCCC
Q psy14872 148 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTSTS 206 (414)
Q Consensus 148 ~~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~~ 206 (414)
...|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++.....
T Consensus 12 R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 12 KNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence 45899999999999999999999999999999999999999999999999988765543
No 57
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.46 E-value=2.4e-14 Score=107.30 Aligned_cols=54 Identities=28% Similarity=0.676 Sum_probs=51.6
Q ss_pred cccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccccchhHhHHH
Q psy14872 339 YCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 392 (414)
Q Consensus 339 ~~ft~~q~~~L~~~F~~---n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~ 392 (414)
+.|+..|+.+|+.+|.. ++||+..++..||..+||+..||++||+|+|+|+|+.
T Consensus 3 ~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 47999999999999999 9999999999999999999999999999999999863
No 58
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.46 E-value=3.7e-14 Score=110.69 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=58.4
Q ss_pred ccCCCcccccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCCC
Q psy14872 141 IWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTSTS 206 (414)
Q Consensus 141 ~~~g~~t~~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~~ 206 (414)
+++.......|+.+|+.+|+..|..++||+..++..||..+||++.||.+||+|+|.|.++.....
T Consensus 3 ~~~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 3 MPDSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCCCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 344555666999999999999999999999999999999999999999999999999988765543
No 59
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=3.9e-14 Score=110.38 Aligned_cols=59 Identities=34% Similarity=0.634 Sum_probs=54.6
Q ss_pred ccccccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 336 ETSYCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F~~---n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
+.++.|+..|+.+|+.+|.. ++||+..+++.||..+||+..||++||+|+|+|+|+...
T Consensus 9 r~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 9 NKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 44568999999999999987 999999999999999999999999999999999998754
No 60
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.45 E-value=2.2e-14 Score=110.80 Aligned_cols=57 Identities=25% Similarity=0.456 Sum_probs=53.1
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTST 205 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~ 205 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++....
T Consensus 12 t~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 12 TRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 379999999999999999999999999999999999999999999999998875543
No 61
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.45 E-value=2e-14 Score=110.20 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=53.6
Q ss_pred cccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCC
Q psy14872 148 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTST 205 (414)
Q Consensus 148 ~~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~ 205 (414)
...|+.+|+.+|+.+|..++||+.+++..||..+||++.||.+||+|+|.|.++....
T Consensus 5 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 5 RTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp SCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 3479999999999999999999999999999999999999999999999988776554
No 62
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.45 E-value=1.4e-14 Score=116.61 Aligned_cols=60 Identities=38% Similarity=0.707 Sum_probs=55.2
Q ss_pred ccccccCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHhc
Q psy14872 336 ETSYCFKEKSRSVLRDWY---THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F---~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~~ 395 (414)
+.++.|+..|+.+|+.+| ..++||+..++..||..+||+..||++||||+|+|+|+....
T Consensus 3 r~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 3 RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 345689999999999999 889999999999999999999999999999999999986543
No 63
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.45 E-value=1.3e-14 Score=112.99 Aligned_cols=57 Identities=37% Similarity=0.711 Sum_probs=52.4
Q ss_pred ccCCHhHHHHHHHHh---hcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWY---THNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTST 205 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f---~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~ 205 (414)
..|+.+|+.+|+.|| ..+|||+.+++..||..+||++.||.+||+|+|+|.++....
T Consensus 6 ~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 6 RNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 489999999999999 899999999999999999999999999999999988765443
No 64
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.45 E-value=1.2e-14 Score=113.31 Aligned_cols=65 Identities=18% Similarity=0.401 Sum_probs=57.8
Q ss_pred CCcccCCCccccccCHHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHH
Q psy14872 328 PRTIWDGEETSYCFKEKSRSVLRDWY-THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 392 (414)
Q Consensus 328 P~~~~~~~~~~~~ft~~q~~~L~~~F-~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~ 392 (414)
|..++.|.+.+..++..|+..|+..| ..++||+..++..||..+||++.||++||||||+|+|+.
T Consensus 2 P~~~~~g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 2 SSGSSGGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 34445566666778889999999999 999999999999999999999999999999999999954
No 65
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=2.9e-14 Score=115.38 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=50.4
Q ss_pred cccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 148 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 148 ~~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
...|+.+|+.+|+.+|..++||+..++.+||..|||++.||++||||+|.|.++
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk 68 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKAL 68 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHS
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHH
Confidence 348999999999999999999999999999999999999999999999977654
No 66
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=2.6e-14 Score=113.36 Aligned_cols=58 Identities=19% Similarity=0.357 Sum_probs=53.5
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTSTS 206 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~~ 206 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++.....
T Consensus 12 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 12 TTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp SSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 4799999999999999999999999999999999999999999999999877655544
No 67
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.6e-14 Score=112.27 Aligned_cols=58 Identities=28% Similarity=0.466 Sum_probs=54.4
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 337 TSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 337 ~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 11 ~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 11 YKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 3568999999999999999999999999999999999999999999999999998644
No 68
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.44 E-value=9.3e-15 Score=117.85 Aligned_cols=55 Identities=42% Similarity=0.646 Sum_probs=51.3
Q ss_pred ccccCCHhHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 147 TSYCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 147 t~~~f~~~~~~~L~~~f~~---~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
.+.-|+++++.+|++||.. ||||+.++|..||+.|||++.||++||+|+|+|.++
T Consensus 8 ~~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk 65 (89)
T 2lk2_A 8 HSHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLP 65 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhh
Confidence 4567999999999999986 999999999999999999999999999999998774
No 69
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.44 E-value=2e-14 Score=111.08 Aligned_cols=56 Identities=21% Similarity=0.465 Sum_probs=52.5
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTS 204 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~ 204 (414)
..|+.+|+.+|+.+|..++||+.+++..||..+||++.||.+||+|+|.|.++...
T Consensus 12 t~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 12 TRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 48999999999999999999999999999999999999999999999998776544
No 70
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-14 Score=111.71 Aligned_cols=56 Identities=18% Similarity=0.382 Sum_probs=52.0
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTS 204 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~ 204 (414)
..|+.+|+.+|+.+|..++||+.+++..||..+||++.||.+||+|+|.|.++...
T Consensus 12 t~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 12 TIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 47999999999999999999999999999999999999999999999998776443
No 71
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-14 Score=114.48 Aligned_cols=61 Identities=26% Similarity=0.481 Sum_probs=56.2
Q ss_pred CCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 334 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 334 ~~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
.++.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||||+|+|+..+
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3455678999999999999999999999999999999999999999999999999997643
No 72
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.44 E-value=3.2e-14 Score=113.23 Aligned_cols=59 Identities=25% Similarity=0.393 Sum_probs=53.8
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHH
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 393 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~ 393 (414)
++.++.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+|+|+..
T Consensus 21 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 21 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ---CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 34567899999999999999999999999999999999999999999999999999764
No 73
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.44 E-value=4.9e-14 Score=124.42 Aligned_cols=57 Identities=26% Similarity=0.440 Sum_probs=53.9
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHH
Q psy14872 336 ETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 392 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~ 392 (414)
+.++.|+..|+..|+.+|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 89 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 89 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 446789999999999999999999999999999999999999999999999999874
No 74
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.43 E-value=4.5e-14 Score=107.34 Aligned_cols=52 Identities=23% Similarity=0.485 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHH
Q psy14872 342 KEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 393 (414)
Q Consensus 342 t~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~ 393 (414)
+.+|+..|+..|..++||+..++++||..+||+..||++||||+|+|+|+..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 7889999999999999999999999999999999999999999999999753
No 75
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.43 E-value=9.3e-15 Score=108.17 Aligned_cols=52 Identities=23% Similarity=0.376 Sum_probs=48.8
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
.|+.+|+.+|+..|..++||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 6899999999999999999999999999999999999999999999987654
No 76
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.43 E-value=2e-14 Score=107.81 Aligned_cols=54 Identities=22% Similarity=0.387 Sum_probs=49.7
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPN 202 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~ 202 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 4 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 4 MTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp -CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred cccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 379999999999999999999999999999999999999999999999987764
No 77
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=6.6e-14 Score=113.43 Aligned_cols=60 Identities=22% Similarity=0.364 Sum_probs=54.8
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHhccCCC
Q psy14872 340 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGSV 399 (414)
Q Consensus 340 ~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~~~~~~ 399 (414)
.||..|+.+|+..|..++||+..+++.||..+||+..+|++||||||+|+|+..+.....
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~~~ 78 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLDS 78 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCCCC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhhcc
Confidence 489999999999999999999999999999999999999999999999999876554333
No 78
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.43 E-value=1.8e-14 Score=111.45 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=51.9
Q ss_pred cccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCC
Q psy14872 148 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNT 203 (414)
Q Consensus 148 ~~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~ 203 (414)
...|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 11 R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 11 QVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34799999999999999999999999999999999999999999999998876543
No 79
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.43 E-value=2.1e-14 Score=108.03 Aligned_cols=53 Identities=21% Similarity=0.444 Sum_probs=50.2
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 8 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 8 TAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 37999999999999999999999999999999999999999999999987654
No 80
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.2e-14 Score=112.23 Aligned_cols=56 Identities=23% Similarity=0.406 Sum_probs=52.6
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTS 204 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~ 204 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++...
T Consensus 22 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 22 TVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 37999999999999999999999999999999999999999999999999887554
No 81
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.42 E-value=3.5e-14 Score=113.50 Aligned_cols=55 Identities=24% Similarity=0.537 Sum_probs=51.8
Q ss_pred cCCHhHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCC
Q psy14872 150 CFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTS 204 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~---~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~ 204 (414)
+|+.+|+.+|+.||.. ++||+.+++..||..|||++.||.+||+|+|+|.++...
T Consensus 8 rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 8 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp CCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 5999999999999999 999999999999999999999999999999999887543
No 82
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.42 E-value=1.5e-14 Score=110.03 Aligned_cols=51 Identities=22% Similarity=0.438 Sum_probs=47.9
Q ss_pred CCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 151 f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
-+++|+.+|+..|..++||+.+++.+||..|||+..||++||+|+|.|.++
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 467999999999999999999999999999999999999999999987654
No 83
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.42 E-value=4.4e-14 Score=114.09 Aligned_cols=58 Identities=26% Similarity=0.424 Sum_probs=53.7
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHH
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 392 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~ 392 (414)
++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 29 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 29 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp --CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 3456789999999999999999999999999999999999999999999999999975
No 84
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.4e-14 Score=110.78 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=53.7
Q ss_pred ccccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCC
Q psy14872 147 TSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTST 205 (414)
Q Consensus 147 t~~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~ 205 (414)
+...|+.+|+.+|+..|..++||+..++..||..+||++.||.+||+|+|.|.++....
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 34579999999999999999999999999999999999999999999999987765443
No 85
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=1.9e-14 Score=107.08 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=49.4
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSS 200 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~ 200 (414)
..|+.+|+.+|+.+|..++||+.+++..||..+||++.||.+||+|+|.|.+
T Consensus 5 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 56 (58)
T 1ig7_A 5 TPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 56 (58)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhc
Confidence 3799999999999999999999999999999999999999999999998754
No 86
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.42 E-value=3.8e-14 Score=114.26 Aligned_cols=51 Identities=25% Similarity=0.587 Sum_probs=49.3
Q ss_pred cCCHhHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCCcccccccccccccCCC
Q psy14872 150 CFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFSSANITSS 200 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~---~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~ 200 (414)
.|+.+|+.+|+.||.. +|||+.+++..||..+||++.||.+||+|+|+|.|
T Consensus 33 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 8999999999999999 99999999999999999999999999999998765
No 87
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.42 E-value=4.2e-14 Score=106.67 Aligned_cols=53 Identities=23% Similarity=0.447 Sum_probs=50.6
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 8 t~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 8 TVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 37999999999999999999999999999999999999999999999998775
No 88
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.41 E-value=2.4e-14 Score=111.27 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=53.3
Q ss_pred CcccccCCHhHHHHHHHHhhc-CCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCC
Q psy14872 145 EETSYCFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNT 203 (414)
Q Consensus 145 ~~t~~~f~~~~~~~L~~~f~~-~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~ 203 (414)
..+...|+.+|+.+|+.+|.. ++||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 345568999999999999996 99999999999999999999999999999998877543
No 89
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.41 E-value=6.5e-14 Score=109.43 Aligned_cols=59 Identities=29% Similarity=0.468 Sum_probs=55.1
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 336 ETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
+.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 11 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 11 RNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 44678999999999999999999999999999999999999999999999999998644
No 90
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.41 E-value=2.3e-14 Score=107.40 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=50.0
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 6 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 6 TAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 37999999999999999999999999999999999999999999999987654
No 91
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=9.7e-14 Score=114.11 Aligned_cols=59 Identities=29% Similarity=0.453 Sum_probs=55.1
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 336 ETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
+.++.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+|+|+...
T Consensus 36 r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 36 GLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 34568999999999999999999999999999999999999999999999999998765
No 92
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.41 E-value=5.8e-14 Score=111.54 Aligned_cols=57 Identities=9% Similarity=0.206 Sum_probs=53.3
Q ss_pred CccccccCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCCccccccccccchhHhHH
Q psy14872 335 EETSYCFKEKSRSVLRDWYTH----NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 391 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~----n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr 391 (414)
++.++.|+.+|+..|+.+|+. ++||+..++++||..+||++.+|+|||||+|+|.|+
T Consensus 18 rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 18 KRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 455678999999999999999 999999999999999999999999999999999873
No 93
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.41 E-value=4.4e-14 Score=104.78 Aligned_cols=52 Identities=29% Similarity=0.422 Sum_probs=49.1
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSS 200 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~ 200 (414)
..|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.|
T Consensus 7 t~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 7 VLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 3799999999999999999999999999999999999999999999998643
No 94
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.40 E-value=2.7e-14 Score=108.13 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=50.1
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
..|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 8 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 60 (63)
T 2h1k_A 8 TAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60 (63)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhh
Confidence 47999999999999999999999999999999999999999999999987654
No 95
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3e-14 Score=112.93 Aligned_cols=55 Identities=25% Similarity=0.501 Sum_probs=51.6
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNT 203 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~ 203 (414)
..|+.+|+.+|+.+|..++||+.+++..||..+||++.||.+||+|+|.|.++..
T Consensus 12 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 12 TSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999877543
No 96
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.40 E-value=1.6e-13 Score=109.77 Aligned_cols=55 Identities=25% Similarity=0.425 Sum_probs=52.1
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNT 203 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~ 203 (414)
..|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 27 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 27 TVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3799999999999999999999999999999999999999999999999988654
No 97
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.40 E-value=3.5e-14 Score=114.33 Aligned_cols=55 Identities=38% Similarity=0.734 Sum_probs=51.5
Q ss_pred ccCCHhHHHHHHHHh---hcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWY---THNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNT 203 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f---~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~ 203 (414)
..|+.+|+.+|+.|| ..++||+.+++..||..+||++.||.+||+|+|+|.++..
T Consensus 6 ~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 6 RNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp CCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 489999999999999 8899999999999999999999999999999999887644
No 98
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.40 E-value=3.3e-14 Score=109.42 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=52.5
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTST 205 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~ 205 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++....
T Consensus 7 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 7 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 379999999999999999999999999999999999999999999999987764443
No 99
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.39 E-value=4.4e-14 Score=111.85 Aligned_cols=55 Identities=16% Similarity=0.321 Sum_probs=51.4
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTS 204 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~ 204 (414)
.|+.+|+.+|+.+|..++||+.+++..||..+||++.||.+||+|+|.|.++...
T Consensus 23 ~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 23 TITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp SCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 7888899999999999999999999999999999999999999999998876543
No 100
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.2e-13 Score=105.15 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=49.9
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
..++++|+.+|+.+|..++||+..++..||..+||++.||.+||+|||.|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 36679999999999999999999999999999999999999999999998775
No 101
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.39 E-value=9.9e-14 Score=113.89 Aligned_cols=60 Identities=22% Similarity=0.417 Sum_probs=54.6
Q ss_pred CCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHH
Q psy14872 334 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 393 (414)
Q Consensus 334 ~~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~ 393 (414)
+++.++.|+..|+.+|+..|..++||+..++..||..+||+..||++||||+|+|+|+..
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 344567899999999999999999999999999999999999999999999999999753
No 102
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.39 E-value=6.4e-14 Score=107.74 Aligned_cols=57 Identities=25% Similarity=0.353 Sum_probs=52.6
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTST 205 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~ 205 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.+.++....
T Consensus 7 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 7 VLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp SSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 379999999999999999999999999999999999999999999999987765543
No 103
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.38 E-value=1.8e-13 Score=110.25 Aligned_cols=54 Identities=28% Similarity=0.678 Sum_probs=51.6
Q ss_pred cccccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccccchhHhH
Q psy14872 337 TSYCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390 (414)
Q Consensus 337 ~~~~ft~~q~~~L~~~F~~---n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~K 390 (414)
.++.|+..|+.+|+.+|.. ++||+..++..||..+||+..||++||+|+|+|+|
T Consensus 30 ~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 30 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 3568999999999999999 99999999999999999999999999999999987
No 104
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.38 E-value=5.3e-13 Score=119.50 Aligned_cols=59 Identities=20% Similarity=0.411 Sum_probs=53.8
Q ss_pred CCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHH
Q psy14872 334 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 392 (414)
Q Consensus 334 ~~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~ 392 (414)
.++.++.|+..|+..|+.+|..++||+..++..||..+||++.+|++||||||+|+||.
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34567789999999999999999999999999999999999999999999999999974
No 105
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.38 E-value=2.2e-13 Score=108.26 Aligned_cols=52 Identities=8% Similarity=0.186 Sum_probs=50.3
Q ss_pred cCCHhHHHHHHHHhhc----CCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 150 CFKEKSRSVLRDWYTH----NPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~----~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
.|+.+|+.+|+.+|.. ++||+..++.+||..+||++.||++||||+|.|.++
T Consensus 23 ~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 23 KFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred cCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 7999999999999999 999999999999999999999999999999998875
No 106
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.7e-14 Score=112.47 Aligned_cols=55 Identities=9% Similarity=0.189 Sum_probs=51.6
Q ss_pred ccCCHhHHHHHHHHhhcC----CCCCHHHHHHHHHHhCCCcccccccccccccCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHN----PYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNT 203 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~----~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~ 203 (414)
..|+.+|+.+|+.+|..+ +||+.+++..||..+||++.||.+||+|+|+|.++..
T Consensus 13 t~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 13 TQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 379999999999999999 9999999999999999999999999999999877643
No 107
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.38 E-value=7.8e-14 Score=111.50 Aligned_cols=55 Identities=25% Similarity=0.625 Sum_probs=52.1
Q ss_pred cccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHH
Q psy14872 339 YCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 393 (414)
Q Consensus 339 ~~ft~~q~~~L~~~F~~---n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~ 393 (414)
+.|+..|+.+|+.+|.. ++||+..++..||..+||+..||++||||+|+|+|+..
T Consensus 7 ~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 7 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp CCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 45999999999999999 99999999999999999999999999999999999753
No 108
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.36 E-value=1.1e-13 Score=109.92 Aligned_cols=57 Identities=9% Similarity=0.194 Sum_probs=52.4
Q ss_pred CCccccccCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCccccccccccchhHhHH
Q psy14872 334 GEETSYCFKEKSRSVLRDWYTH-----NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 391 (414)
Q Consensus 334 ~~~~~~~ft~~q~~~L~~~F~~-----n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr 391 (414)
.++.++.|+.+|+..|+ .|.. ++||+..++++||..+||++.+|+|||||+|+|+|+
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34556789999999999 7998 999999999999999999999999999999999873
No 109
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.36 E-value=3.7e-14 Score=109.01 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=51.3
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNT 203 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~ 203 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 8 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 8 THFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 3799999999999999999999999999999999999999999999998876543
No 110
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.36 E-value=2e-13 Score=105.44 Aligned_cols=56 Identities=25% Similarity=0.367 Sum_probs=52.0
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTST 205 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~ 205 (414)
-++..|+..|+..|..++||+..++..||..+||++.||.+||+|||.|.++....
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 57889999999999999999999999999999999999999999999998875543
No 111
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.36 E-value=2.2e-13 Score=104.52 Aligned_cols=54 Identities=41% Similarity=0.753 Sum_probs=50.1
Q ss_pred ccCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHH
Q psy14872 340 CFKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 393 (414)
Q Consensus 340 ~ft~~q~~~L~~~F~---~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~ 393 (414)
.|+.+|+.+|+.||. .++||+..++..||..+||+..||++||+|+|+|.|+..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHH
Confidence 689999999999999 899999999999999999999999999999999999753
No 112
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.36 E-value=8.8e-14 Score=110.35 Aligned_cols=53 Identities=19% Similarity=0.365 Sum_probs=50.6
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 12 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 64 (80)
T 2cue_A 12 TSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 64 (80)
T ss_dssp CCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999988774
No 113
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.36 E-value=1.1e-13 Score=106.33 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=50.4
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 7 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk 59 (68)
T 1zq3_P 7 TTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKI 59 (68)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999988664
No 114
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.2e-13 Score=110.33 Aligned_cols=58 Identities=17% Similarity=0.293 Sum_probs=52.4
Q ss_pred cccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCC
Q psy14872 148 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTST 205 (414)
Q Consensus 148 ~~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~ 205 (414)
...|+.+|+.+|+.+|..++||+..++..||..|||++.||.+||+|+|.|.++....
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHh
Confidence 3469999999999999999999999999999999999999999999999887654433
No 115
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.35 E-value=1e-13 Score=108.07 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=51.5
Q ss_pred cccCCHhHHHHHHHHhh-cCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCC
Q psy14872 148 SYCFKEKSRSVLRDWYT-HNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNT 203 (414)
Q Consensus 148 ~~~f~~~~~~~L~~~f~-~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~ 203 (414)
...|+.+|+.+|+.+|. .++||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 6 VSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 44899999999999999 599999999999999999999999999999998877543
No 116
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.35 E-value=9.7e-14 Score=110.31 Aligned_cols=52 Identities=23% Similarity=0.424 Sum_probs=49.8
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
.|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 24 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk 75 (81)
T 1fjl_A 24 TFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 75 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhh
Confidence 7999999999999999999999999999999999999999999999987654
No 117
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.3e-13 Score=103.53 Aligned_cols=52 Identities=23% Similarity=0.395 Sum_probs=49.3
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHH
Q psy14872 340 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 391 (414)
Q Consensus 340 ~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr 391 (414)
.++..|+..|+..|..++||+..++..||..+||++.+|++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4578999999999999999999999999999999999999999999998875
No 118
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.5e-13 Score=109.67 Aligned_cols=64 Identities=25% Similarity=0.419 Sum_probs=57.7
Q ss_pred CCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh---------------------CCCccccccccccchhHhHHH
Q psy14872 334 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEAT---------------------GLTTTQVSNWFKNRRQRDRAA 392 (414)
Q Consensus 334 ~~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~---------------------gL~~~qV~vWFqNrR~R~Kr~ 392 (414)
.++.++.|++.|+.+|+..|..++||+..++++||..+ +|++.+|++||||||+++|+.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr~ 85 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAFR 85 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHHh
Confidence 34556789999999999999999999999999999999 799999999999999999998
Q ss_pred HhccC
Q psy14872 393 EQKDG 397 (414)
Q Consensus 393 ~~~~~ 397 (414)
.+...
T Consensus 86 ~~~~~ 90 (102)
T 2da6_A 86 QKLAM 90 (102)
T ss_dssp HHHHH
T ss_pred hHhhh
Confidence 66443
No 119
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.35 E-value=2.1e-13 Score=105.33 Aligned_cols=55 Identities=31% Similarity=0.473 Sum_probs=51.8
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 340 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 340 ~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
..+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+...
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 5689999999999999999999999999999999999999999999999997643
No 120
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.35 E-value=2.1e-13 Score=107.33 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=50.1
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
..|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.+.++
T Consensus 18 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 70 (77)
T 1puf_A 18 CPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 70 (77)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999987654
No 121
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.34 E-value=2.2e-13 Score=103.43 Aligned_cols=52 Identities=12% Similarity=0.335 Sum_probs=47.1
Q ss_pred HhHHHHHHHHh-hcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCC
Q psy14872 153 EKSRSVLRDWY-THNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTS 204 (414)
Q Consensus 153 ~~~~~~L~~~f-~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~ 204 (414)
..++.+|+..| ..++||+..++..||+.+||++.||++||||||.+.|+...
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~ 61 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGP 61 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCC
Confidence 35699999999 57999999999999999999999999999999999886443
No 122
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.34 E-value=5.4e-13 Score=118.85 Aligned_cols=57 Identities=26% Similarity=0.496 Sum_probs=53.4
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHH
Q psy14872 336 ETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 392 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~ 392 (414)
+.++.|+..|+..|+.+|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 98 r~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 98 RKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 446789999999999999999999999999999999999999999999999999964
No 123
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.34 E-value=1.6e-13 Score=108.00 Aligned_cols=53 Identities=26% Similarity=0.393 Sum_probs=50.4
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
..|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 14 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr 66 (77)
T 1nk2_P 14 VLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR 66 (77)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhh
Confidence 37999999999999999999999999999999999999999999999988764
No 124
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.34 E-value=3.1e-13 Score=105.52 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=52.5
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTS 204 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~ 204 (414)
..|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++...
T Consensus 14 t~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 14 TTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 37999999999999999999999999999999999999999999999999877544
No 125
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.33 E-value=2e-13 Score=108.66 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=51.2
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPN 202 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~ 202 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 25 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 25 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 379999999999999999999999999999999999999999999999987764
No 126
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.32 E-value=3.2e-13 Score=110.82 Aligned_cols=56 Identities=21% Similarity=0.429 Sum_probs=52.4
Q ss_pred cccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCC
Q psy14872 148 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNT 203 (414)
Q Consensus 148 ~~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~ 203 (414)
...|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 29 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 29 ICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp SSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 34899999999999999999999999999999999999999999999999888743
No 127
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.32 E-value=2.7e-13 Score=110.68 Aligned_cols=55 Identities=22% Similarity=0.363 Sum_probs=51.5
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNT 203 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~ 203 (414)
..|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 22 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 76 (93)
T 3a01_A 22 TSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhh
Confidence 4799999999999999999999999999999999999999999999998877543
No 128
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.31 E-value=3.3e-13 Score=108.94 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=51.0
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPN 202 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~ 202 (414)
..|+.+|+.+|+..|..++||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 33 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 33 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 479999999999999999999999999999999999999999999999887653
No 129
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.31 E-value=9.4e-13 Score=100.07 Aligned_cols=56 Identities=14% Similarity=0.302 Sum_probs=52.0
Q ss_pred CccccccCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCccccccccccchhHhH
Q psy14872 335 EETSYCFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~-n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~K 390 (414)
++.|+.|+.+|+.+|+..|+. ++||+.++++.||.++||++.+|++||||+|--.+
T Consensus 8 kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 8 PRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 345678999999999999999 99999999999999999999999999999998755
No 130
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.31 E-value=1.1e-12 Score=104.08 Aligned_cols=52 Identities=8% Similarity=0.179 Sum_probs=49.0
Q ss_pred ccCCHhHHHHHHHHhhc-----CCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTH-----NPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~-----~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
..|+.+|+.+|+ .|.. ++||+..++.+||..+||++.||++||||+|.|.++
T Consensus 22 t~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 22 TKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred ccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 379999999999 6888 999999999999999999999999999999998875
No 131
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.30 E-value=2.2e-13 Score=111.53 Aligned_cols=55 Identities=22% Similarity=0.573 Sum_probs=51.3
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhC---------------CCcccccccccccccCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATG---------------LTTTQVSNWFSSANITSSPNT 203 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tg---------------Lt~~QV~~WF~NrR~r~~~~~ 203 (414)
..|+..|+.+|+.+|..++||+..+++.||+.+| |++.||.+||+|+|.|.++..
T Consensus 12 ~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 12 FTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999 999999999999999877543
No 132
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.29 E-value=4.3e-13 Score=101.80 Aligned_cols=50 Identities=14% Similarity=0.460 Sum_probs=46.1
Q ss_pred HHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHH
Q psy14872 343 EKSRSVLRDWY-THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 392 (414)
Q Consensus 343 ~~q~~~L~~~F-~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~ 392 (414)
..++..|+..| ..++||+..++.+||..+||+++||++||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 34699999999 579999999999999999999999999999999999854
No 133
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.29 E-value=1.8e-12 Score=104.54 Aligned_cols=56 Identities=41% Similarity=0.621 Sum_probs=52.1
Q ss_pred cccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 339 YCFKEKSRSVLRDWYTH---NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 339 ~~ft~~q~~~L~~~F~~---n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
.-|+.+++.+|+.||.. ++||+.+++..||..+||+..||++||+|+|+|.++...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 35889999999999987 899999999999999999999999999999999998643
No 134
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.27 E-value=1.4e-12 Score=115.62 Aligned_cols=56 Identities=27% Similarity=0.508 Sum_probs=53.2
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHH
Q psy14872 336 ETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 391 (414)
Q Consensus 336 ~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr 391 (414)
+.++.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||||+|+||
T Consensus 95 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 95 KRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 44568999999999999999999999999999999999999999999999999985
No 135
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.26 E-value=5.9e-13 Score=109.42 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=51.0
Q ss_pred cccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 148 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 148 ~~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
...|+.+|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 38 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 91 (97)
T 1b72_A 38 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKK 91 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhH
Confidence 447999999999999999999999999999999999999999999999988664
No 136
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.25 E-value=1.9e-12 Score=116.11 Aligned_cols=59 Identities=24% Similarity=0.323 Sum_probs=52.9
Q ss_pred ccccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCC
Q psy14872 147 TSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTST 205 (414)
Q Consensus 147 t~~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~ 205 (414)
.+..|+..|+.+|+.+|..++||+.+++..||..+||++.||.+||||+|+|.++....
T Consensus 100 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 100 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 34489999999999999999999999999999999999999999999999998875544
No 137
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.24 E-value=1.2e-12 Score=107.95 Aligned_cols=60 Identities=28% Similarity=0.525 Sum_probs=52.9
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHH------------------hC---CCccccccccccchhHhHHHH
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEA------------------TG---LTTTQVSNWFKNRRQRDRAAE 393 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~------------------~g---L~~~qV~vWFqNrR~R~Kr~~ 393 (414)
++.++.|+..|+.+|+..|..++||+..++++||.. +| |++.+|++||||||+++|+..
T Consensus 10 rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k~ 89 (99)
T 1lfb_A 10 RRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRH 89 (99)
T ss_dssp ---CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHhc
Confidence 455678999999999999999999999999999999 88 999999999999999987654
Q ss_pred h
Q psy14872 394 Q 394 (414)
Q Consensus 394 ~ 394 (414)
+
T Consensus 90 ~ 90 (99)
T 1lfb_A 90 K 90 (99)
T ss_dssp -
T ss_pred h
Confidence 3
No 138
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.24 E-value=2.7e-12 Score=97.53 Aligned_cols=52 Identities=12% Similarity=0.253 Sum_probs=49.3
Q ss_pred cCCHhHHHHHHHHhhc-CCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 150 CFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~-~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
.|+.+|+.+|+.+|.. ++||+.++++.||..|||++.+|.+||||+|.-.+.
T Consensus 13 ~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 13 KISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 7899999999999998 999999999999999999999999999999986664
No 139
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.22 E-value=1.8e-12 Score=116.54 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=51.5
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCCCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTST 205 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~~~~ 205 (414)
.|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|||.|.|+....
T Consensus 105 ~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 105 SIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred eccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 79999999999999999999999999999999999999999999999998875543
No 140
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.22 E-value=2.2e-12 Score=114.33 Aligned_cols=52 Identities=25% Similarity=0.466 Sum_probs=50.4
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
.|+..|+.+|+.+|..++||+..++..||+.+||++.||.+||+|+|+|.|+
T Consensus 99 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 99 SFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 7999999999999999999999999999999999999999999999998775
No 141
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.21 E-value=3e-12 Score=114.88 Aligned_cols=61 Identities=25% Similarity=0.373 Sum_probs=54.0
Q ss_pred CCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 334 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 334 ~~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
.++.++.|+..|+.+|+.+|..++||+..++..||..+||++.||++||||+|+|+|+...
T Consensus 97 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 97 PKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 3456778999999999999999999999999999999999999999999999999997643
No 142
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.20 E-value=5.1e-12 Score=104.26 Aligned_cols=56 Identities=25% Similarity=0.444 Sum_probs=51.2
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHH------------------hC---CCcccccccccccccCCCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEA------------------TG---LTTTQVSNWFSSANITSSPNTS 204 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~------------------tg---Lt~~QV~~WF~NrR~r~~~~~~ 204 (414)
..|+..|+.+|+.+|..++||+..++++||+. +| |++.||.+||+|+|.+.+....
T Consensus 14 t~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k~~ 90 (99)
T 1lfb_A 14 FKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRHK 90 (99)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC-
T ss_pred cCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHhch
Confidence 37899999999999999999999999999999 88 9999999999999998776543
No 143
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.18 E-value=5.7e-12 Score=111.12 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=50.9
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPN 202 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~ 202 (414)
.|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|||.|.|+.
T Consensus 93 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 93 TISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 79999999999999999999999999999999999999999999999988763
No 144
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.15 E-value=8.1e-12 Score=111.75 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=51.2
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPN 202 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~ 202 (414)
..|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|||.|.|+.
T Consensus 106 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 106 TSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred cccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 479999999999999999999999999999999999999999999999987753
No 145
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.1e-11 Score=102.31 Aligned_cols=53 Identities=25% Similarity=0.415 Sum_probs=49.4
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHh---------------------CCCcccccccccccccCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEAT---------------------GLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~t---------------------gLt~~QV~~WF~NrR~r~~~ 201 (414)
..|+..|+.+|+.+|..++||+.+++++||+.+ +|++.+|.+||+|+|.+.++
T Consensus 11 t~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 11 FKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 367899999999999999999999999999999 79999999999999987664
No 146
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.09 E-value=1.3e-11 Score=109.93 Aligned_cols=53 Identities=23% Similarity=0.397 Sum_probs=50.4
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
..|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|||.|.|+
T Consensus 101 t~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 101 TSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 37999999999999999999999999999999999999999999999988765
No 147
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=3.6e-11 Score=91.93 Aligned_cols=47 Identities=28% Similarity=0.497 Sum_probs=44.3
Q ss_pred HhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCC
Q psy14872 153 EKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITS 199 (414)
Q Consensus 153 ~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~ 199 (414)
++|+.+|+++|..|++|+.+++..||+.+||+.++|++||+|+|.+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 57799999999999999999999999999999999999999999643
No 148
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=5.8e-11 Score=90.82 Aligned_cols=47 Identities=30% Similarity=0.532 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHh
Q psy14872 343 EKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRD 389 (414)
Q Consensus 343 ~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~ 389 (414)
.+|+.+|+.+|..|++|+.+++..||..+||+.++|++||+|+|++.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 46899999999999999999999999999999999999999999743
No 149
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.91 E-value=1.2e-10 Score=107.05 Aligned_cols=57 Identities=28% Similarity=0.513 Sum_probs=52.3
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCccccccccccchhHhHH
Q psy14872 335 EETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATG---------------------LTTTQVSNWFKNRRQRDRA 391 (414)
Q Consensus 335 ~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~g---------------------L~~~qV~vWFqNrR~R~Kr 391 (414)
++.++.|++.|+.+|+..|..++||+..+|++||..++ |+..+|++||||||++.|.
T Consensus 116 rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 116 RRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 45567899999999999999999999999999999999 9999999999999998763
No 150
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.89 E-value=4.4e-10 Score=104.75 Aligned_cols=51 Identities=25% Similarity=0.480 Sum_probs=47.7
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhC---------------------CCcccccccccccccCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATG---------------------LTTTQVSNWFSSANITS 199 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tg---------------------Lt~~QV~~WF~NrR~r~ 199 (414)
..|+..|+.+|+.+|..|+||+..+|++||+.+| ||+.||.+||+|||++.
T Consensus 147 ~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 147 FKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 3789999999999999999999999999999998 89999999999999753
No 151
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.89 E-value=4.4e-10 Score=113.04 Aligned_cols=51 Identities=25% Similarity=0.476 Sum_probs=49.0
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSS 200 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~ 200 (414)
.|+..++..|+..|..|+||+..+|.+||..|||+++||++||+|||+|.|
T Consensus 371 ~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 371 AISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp SSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 688999999999999999999999999999999999999999999999865
No 152
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.86 E-value=7.2e-10 Score=103.27 Aligned_cols=56 Identities=29% Similarity=0.528 Sum_probs=51.2
Q ss_pred CCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCccccccccccchhHh
Q psy14872 334 GEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATG---------------------LTTTQVSNWFKNRRQRD 389 (414)
Q Consensus 334 ~~~~~~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~g---------------------L~~~qV~vWFqNrR~R~ 389 (414)
.++.|+.|++.|+.+|+.+|..++||+..+|++||..+| |+..+|++||+|||++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 345677899999999999999999999999999999987 89999999999999864
No 153
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.85 E-value=2.7e-10 Score=104.83 Aligned_cols=52 Identities=25% Similarity=0.468 Sum_probs=49.4
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhC---------------------CCcccccccccccccCCC
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATG---------------------LTTTQVSNWFSSANITSS 200 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tg---------------------Lt~~QV~~WF~NrR~r~~ 200 (414)
..|+..|+.+|+.+|..++||+..+|++||..+| ||+.||.+||+|||.+.+
T Consensus 120 ~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 120 FKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp CCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred cccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 3789999999999999999999999999999999 999999999999998765
No 154
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.75 E-value=2e-09 Score=108.23 Aligned_cols=52 Identities=29% Similarity=0.532 Sum_probs=49.6
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhH
Q psy14872 339 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390 (414)
Q Consensus 339 ~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~K 390 (414)
..|+..|+..|+..|..++||+..+|++||..+||+++||++||||||+|+|
T Consensus 370 ~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 370 AAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp CSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4688999999999999999999999999999999999999999999999875
No 155
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=97.98 E-value=2e-06 Score=57.78 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=17.6
Q ss_pred cccccccccchhHhHHHHhc
Q psy14872 376 TQVSNWFKNRRQRDRAAEQK 395 (414)
Q Consensus 376 ~qV~vWFqNrR~R~Kr~~~~ 395 (414)
+||+|||||||+|+|+....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 58999999999999997654
No 156
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=97.20 E-value=4.1e-05 Score=51.34 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=17.0
Q ss_pred ccccccccccccCCCCCCCC
Q psy14872 186 TQVSNWFSSANITSSPNTST 205 (414)
Q Consensus 186 ~QV~~WF~NrR~r~~~~~~~ 205 (414)
+||++||||||.|.|+....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 59999999999998876554
No 157
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.22 E-value=0.0029 Score=48.10 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=37.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccc
Q psy14872 156 RSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSS 194 (414)
Q Consensus 156 ~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~N 194 (414)
+++|+++|..+..+.+++-..|+.+++|+..||+.||.-
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 789999999999999999999999999999999999965
No 158
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.43 E-value=0.015 Score=44.13 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccc
Q psy14872 345 SRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKN 384 (414)
Q Consensus 345 q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqN 384 (414)
-.++|+++|..++.+..++.+.|+.+++|+..||+.||..
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3689999999999999999999999999999999999974
No 159
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=50.06 E-value=9.2 Score=31.16 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=36.5
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANI 197 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~ 197 (414)
..|+.+++..+...+..++.++. ..+|+.+|++...|..|..++..
T Consensus 6 ~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 6 RQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp CCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred eeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 47889998777777766777664 35889999999999999887553
No 160
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=47.53 E-value=6.2 Score=29.94 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=39.8
Q ss_pred cccCCHhHHHHHHHHhh-----cCCCCCHHHHHHHHHHhCCCcccccccccc
Q psy14872 148 SYCFKEKSRSVLRDWYT-----HNPYPSPREKRELAEATGLTTTQVSNWFSS 194 (414)
Q Consensus 148 ~~~f~~~~~~~L~~~f~-----~~~yPs~~ek~~La~~tgLt~~QV~~WF~N 194 (414)
...+++++...|+..|. .+.+.+.+|-..+...+|++..+|..+|..
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~ 69 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQR 69 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHH
Confidence 34788889999999987 478999999999999999999998888864
No 161
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=47.49 E-value=6.4 Score=27.83 Aligned_cols=45 Identities=13% Similarity=0.283 Sum_probs=30.2
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSA 195 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~Nr 195 (414)
.|+.+........+.. ..........+|..+|++..+|.+|....
T Consensus 5 ~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 5 IFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred cCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 5777776555444433 33222336789999999999999997543
No 162
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=40.59 E-value=24 Score=27.55 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=39.5
Q ss_pred ccccCCHhHHHHHHHHhh-----cCCCCCHHHHHHHHHHhC--CCcccccccccc
Q psy14872 147 TSYCFKEKSRSVLRDWYT-----HNPYPSPREKRELAEATG--LTTTQVSNWFSS 194 (414)
Q Consensus 147 t~~~f~~~~~~~L~~~f~-----~~~yPs~~ek~~La~~tg--Lt~~QV~~WF~N 194 (414)
....+++++...|++.|. .+++.+.+|-..+...+| ++..+|..+|+.
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 345789999999999998 479999999999998888 567777777754
No 163
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=37.06 E-value=14 Score=24.21 Aligned_cols=41 Identities=10% Similarity=0.286 Sum_probs=27.4
Q ss_pred CCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccc
Q psy14872 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 151 f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR 196 (414)
++.++...+...+.. . -+ ..++|+.+|++...|..|+....
T Consensus 6 ~~~~~~~~i~~l~~~-g-~s---~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEK-G-HP---RQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHT-T-CC---HHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHc-C-CC---HHHHHHHHCCCHHHHHHHHHHcc
Confidence 444554444444443 2 23 56799999999999999997543
No 164
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=34.25 E-value=28 Score=28.85 Aligned_cols=43 Identities=7% Similarity=0.017 Sum_probs=31.0
Q ss_pred ccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccc
Q psy14872 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 149 ~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR 196 (414)
..|+.+.+......+. ..+ + ...+|+.+|++...|..|+...+
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~-s---~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGV-R---PCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTC-C---HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-C---HHHHHHHHCcCHHHHHHHHHHHH
Confidence 3677777766655554 333 2 45789999999999999987543
No 165
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=33.48 E-value=12 Score=29.05 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=37.5
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPN 202 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~~ 202 (414)
.+++.++.+|...+..-. -.++|+.+|++...|+++..+.+.+.+..
T Consensus 27 ~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 678888999988643322 26799999999999999999988877654
No 166
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=33.17 E-value=26 Score=22.41 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=28.4
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccc
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR 196 (414)
.++.+.+..+...+. ..+ + ..++|+.+|++...|..|....+
T Consensus 5 ~l~~~~~~~i~~~~~-~g~-s---~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 5 ALSDTERAQLDVMKL-LNV-S---LHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCHHHHHHHHHHHH-TTC-C---HHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHHHHH-cCC-C---HHHHHHHHCcCHHHHHHHHhhHH
Confidence 456666644444443 233 2 56789999999999999986543
No 167
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=31.96 E-value=13 Score=28.14 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=39.0
Q ss_pred cccccCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 146 ETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 146 ~t~~~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
.....+++.++.+|..++ ..+ .-.++|+.+|++...|+++..+.+.+.+.
T Consensus 17 ~~~~~Lt~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 17 RDVNQLTPRERDILKLIA--QGL----PNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp CCGGGSCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 334578999999999853 222 34679999999999999999988877664
No 168
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=29.33 E-value=13 Score=26.68 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=37.5
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
.+++.++.+|...|--+.+-. -.-.++|+.+|++...|+.+....+.+.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478888999998873211111 123568999999999999999888887764
No 169
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=29.28 E-value=17 Score=25.20 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy14872 174 KRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 174 k~~La~~tgLt~~QV~~WF~NrR 196 (414)
...||+.+|++...|+.|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998744
No 170
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=28.49 E-value=15 Score=29.13 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=35.9
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSS 200 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~ 200 (414)
.+++.++.+|..++..-. -.++|+.+|+++..|+++..+.+.|..
T Consensus 34 ~Lt~re~~Vl~l~~~G~s------~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 34 RLSPKESEVLRLFAEGFL------VTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SCCHHHHHHHHHHHHTCC------HHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 688999999987654322 278999999999999999988776544
No 171
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=28.20 E-value=18 Score=25.20 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy14872 174 KRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 174 k~~La~~tgLt~~QV~~WF~NrR 196 (414)
...||+.+|++...|..|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 46799999999999999998744
No 172
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=28.16 E-value=39 Score=25.71 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=38.6
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHh
Q psy14872 340 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394 (414)
Q Consensus 340 ~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~ 394 (414)
.++..+..+|.-.|.... ...++|..+|++...|+.+....|.+.|+...
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 356777888877654432 35688999999999999999988888887644
No 173
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.09 E-value=15 Score=26.92 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=35.4
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
.+++.++.+|..++. .+ .-.++|+.+|++...|..+....+.+.+.
T Consensus 16 ~L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 467788888887532 33 22579999999999999999988877664
No 174
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=27.73 E-value=22 Score=24.89 Aligned_cols=44 Identities=14% Similarity=0.307 Sum_probs=29.1
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccc
Q psy14872 340 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKN 384 (414)
Q Consensus 340 ~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqN 384 (414)
.|+.+........+... .........+|..+|++...|..|...
T Consensus 5 ~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 5 IFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 56777665554444433 221122568899999999999999764
No 175
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=27.05 E-value=46 Score=26.73 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=36.6
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHh
Q psy14872 339 YCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRD 389 (414)
Q Consensus 339 ~~ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~ 389 (414)
..||.++...+...+..++..+.. .+|..+|++...|..|..+.....
T Consensus 6 ~~~t~e~K~~iv~~~~~~g~~~~~---~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 6 RQLTFREKSRIIQEVEENPDLRKG---EIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CCCCHHHHHHHHHHHHHCTTSCHH---HHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred eeCCHHHHHHHHHHHHHCCCCcHH---HHHHHhCCCHHHHHHHHhchhhhc
Confidence 468888887777777666665542 578999999999999998766543
No 176
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=26.91 E-value=18 Score=25.43 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy14872 174 KRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 174 k~~La~~tgLt~~QV~~WF~NrR 196 (414)
...||+.+|++...|+.|..+.+
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998854
No 177
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=26.30 E-value=31 Score=26.12 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=37.8
Q ss_pred cCCHhHHHHHHHHhh-----cCCCCCHHHHHHHHHHhCCCcccccccccc
Q psy14872 150 CFKEKSRSVLRDWYT-----HNPYPSPREKRELAEATGLTTTQVSNWFSS 194 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~-----~~~yPs~~ek~~La~~tgLt~~QV~~WF~N 194 (414)
.++.++...+++.|. .+++.+.+|-..+...+|++..++...|..
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~ 51 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWEL 51 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467788889999887 378999999999988999998888887753
No 178
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=26.04 E-value=42 Score=25.66 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=29.9
Q ss_pred cCCHhHHHHHHHHhhcC-CCCCHHHHHHHHHHhCCCcccccccccccc
Q psy14872 150 CFKEKSRSVLRDWYTHN-PYPSPREKRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~-~yPs~~ek~~La~~tgLt~~QV~~WF~NrR 196 (414)
.|+.+.+......+... .. -...+|..+|++..+|.+|....+
T Consensus 5 ~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 5 TYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHHHh
Confidence 57777765444444322 22 367899999999999999986544
No 179
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=25.87 E-value=41 Score=27.45 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=37.4
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccchhHhHHHHhc
Q psy14872 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395 (414)
Q Consensus 341 ft~~q~~~L~~~F~~n~yPs~~~r~~LA~~~gL~~~qV~vWFqNrR~R~Kr~~~~ 395 (414)
+++.+..++. .|... + ...++|..+|++...|+.+....|.+.|+.-..
T Consensus 110 L~~~~r~v~~-~~~~g-~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 110 FSKFEKEVLT-YLIRG-Y----SYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp SCHHHHHHHH-HHTTT-C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHcC-C----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788887 44332 2 356789999999999999999888888876543
No 180
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=25.12 E-value=32 Score=26.29 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=37.4
Q ss_pred cCCHhHHHHHHHHhh-----cCCCCCHHHHHHHHHHhCCCcccccccccc
Q psy14872 150 CFKEKSRSVLRDWYT-----HNPYPSPREKRELAEATGLTTTQVSNWFSS 194 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~-----~~~yPs~~ek~~La~~tgLt~~QV~~WF~N 194 (414)
.++.++...|++.|. .+++.+.+|-..+...+|++..+|..+|..
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~ 52 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSL 52 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 356778888888886 479999999999888899999998888763
No 181
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=25.05 E-value=17 Score=26.82 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy14872 174 KRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 174 k~~La~~tgLt~~QV~~WF~NrR 196 (414)
...||+.+|++...|+.|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 56899999999999999998744
No 182
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=24.82 E-value=22 Score=25.47 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy14872 174 KRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 174 k~~La~~tgLt~~QV~~WF~NrR 196 (414)
...||+.+|++...|..|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998744
No 183
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=24.44 E-value=43 Score=26.12 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=31.7
Q ss_pred cCCHhHHHH-HHHHhhcC-CCCCH-HHHHHHHHHhCCCcccccccccccc
Q psy14872 150 CFKEKSRSV-LRDWYTHN-PYPSP-REKRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 150 ~f~~~~~~~-L~~~f~~~-~yPs~-~ek~~La~~tgLt~~QV~~WF~NrR 196 (414)
.|+.+.+.. +....... .|++. .-...+|..+|+++.+|.+|..-.+
T Consensus 6 ~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 6 RFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 677777653 33333321 24443 4567899999999999999976544
No 184
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.31 E-value=23 Score=25.27 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy14872 174 KRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 174 k~~La~~tgLt~~QV~~WF~NrR 196 (414)
...||+.+|++...|+.|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998744
No 185
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=23.79 E-value=24 Score=25.26 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy14872 174 KRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 174 k~~La~~tgLt~~QV~~WF~NrR 196 (414)
...||+.+|++...|..|..+.+
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999998854
No 186
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=23.69 E-value=23 Score=24.71 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy14872 174 KRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 174 k~~La~~tgLt~~QV~~WF~NrR 196 (414)
...||+.+|++...|+.|..+.+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998744
No 187
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=23.55 E-value=25 Score=25.23 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy14872 174 KRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 174 k~~La~~tgLt~~QV~~WF~NrR 196 (414)
...||+.+|++...|..|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46799999999999999998744
No 188
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=23.30 E-value=32 Score=26.20 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=36.0
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSP 201 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~~ 201 (414)
.+++.++.+|..++. .+.. .++|+.+|++...|+++..+.+.+.+.
T Consensus 29 ~Lt~~e~~vl~l~~~--g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 29 MLTEREMEILLLIAK--GYSN----QEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GCCSHHHHHHHHHHT--TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHc--CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 678888999988543 3332 368999999999999999998887764
No 189
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=22.58 E-value=25 Score=25.83 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy14872 174 KRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 174 k~~La~~tgLt~~QV~~WF~NrR 196 (414)
...||+.+|++...|+.|..+++
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
No 190
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=22.46 E-value=55 Score=24.71 Aligned_cols=41 Identities=10% Similarity=0.241 Sum_probs=28.4
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSA 195 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~Nr 195 (414)
.|+.+........+. ... -...+|+.+|++...|..|....
T Consensus 22 ~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 22 SLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp SCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 677777544444444 222 25678999999999999997543
No 191
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.23 E-value=28 Score=24.68 Aligned_cols=19 Identities=37% Similarity=0.723 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCcccccccc
Q psy14872 174 KRELAEATGLTTTQVSNWF 192 (414)
Q Consensus 174 k~~La~~tgLt~~QV~~WF 192 (414)
...||+.+|++..-|+.|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999998
No 192
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=22.14 E-value=26 Score=25.17 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy14872 174 KRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 174 k~~La~~tgLt~~QV~~WF~NrR 196 (414)
...||+.+|++...|+.|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45699999999999999998754
No 193
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=21.52 E-value=29 Score=24.57 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy14872 174 KRELAEATGLTTTQVSNWFSSAN 196 (414)
Q Consensus 174 k~~La~~tgLt~~QV~~WF~NrR 196 (414)
...||+.+|++...|..|..+.+
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46699999999999999998743
No 194
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=21.36 E-value=1.4e+02 Score=24.72 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=38.5
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHH-HHHHh------CCCcccccccccccccCCCCCCCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRE-LAEAT------GLTTTQVSNWFSSANITSSPNTSTS 206 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~-La~~t------gLt~~QV~~WF~NrR~r~~~~~~~~ 206 (414)
.++.+....+.+++..++..+..+... |.+.. .++..+|..|+...+..-.+...+.
T Consensus 83 ~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~ 146 (159)
T 2k27_A 83 VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDS 146 (159)
T ss_dssp CCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCC
T ss_pred CCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcccC
Confidence 456667788888888888778766443 33321 4789999999988766544444443
No 195
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=21.03 E-value=20 Score=25.73 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=35.4
Q ss_pred cCCHhHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCcccccccccccccCCC
Q psy14872 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSS 200 (414)
Q Consensus 150 ~f~~~~~~~L~~~f~~~~yPs~~ek~~La~~tgLt~~QV~~WF~NrR~r~~ 200 (414)
.+++.++.+|..++ ..+ .-.++|+.+|++...|..+....+.+.+
T Consensus 11 ~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 11 LLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 68889999998853 333 3457999999999999999988776554
Done!