RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14872
(414 letters)
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain,
hoogsteen base PAIR, transcription/DNA complex; HET:
5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Length = 60
Score = 76.6 bits (189), Expect = 6e-18
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 341 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
F +++ +L W+ NPY + L + T L+ Q+ NW NRR++++
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 57
Score = 66.2 bits (162), Expect = 2e-14
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 151 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFSSA 195
F +++ +L W+ NPY + L + T L+ Q+ NW S+
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNR 52
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein,
protein/DNA complex; HET: DNA; 2.35A {Homo sapiens}
SCOP: a.4.1.1 PDB: 1lfu_P
Length = 87
Score = 77.2 bits (190), Expect = 7e-18
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 341 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 397
F +++ +L ++ Y+H NPYPS K ELA+ G+T +QVSNWF N+R R + K
Sbjct: 8 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67
Query: 398 SVHSFRVNIGGDSKT 412
+ + T
Sbjct: 68 EEANIYAAKTAVTAT 82
Score = 67.9 bits (166), Expect = 1e-14
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Query: 151 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWF 192
F +++ +L ++ Y+H NPYPS K ELA+ G+T +QVSNWF
Sbjct: 8 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWF 52
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription
regulation, transcriptional repression, DNA- binding
protein; HET: DNA; 2.25A {Saccharomyces cerevisiae}
SCOP: a.4.1.1
Length = 87
Score = 76.0 bits (187), Expect = 2e-17
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 341 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
F +++ +L W+ NPY + L + T L+ Q+ NW NRR++++
Sbjct: 34 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86
Score = 66.4 bits (162), Expect = 5e-14
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 151 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFSSA 195
F +++ +L W+ NPY + L + T L+ Q+ NW S+
Sbjct: 34 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNR 81
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian,
protein-DNA complex, HOX hexapeptide, TALE homeodomain,
homeodomain interaction; 1.90A {Homo sapiens} SCOP:
a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Length = 73
Score = 75.1 bits (185), Expect = 2e-17
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 341 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395
F +++ +L ++ Y+H NPYPS K ELA+ G+T +QVSNWF N+R R + K
Sbjct: 8 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65
Score = 66.6 bits (163), Expect = 2e-14
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Query: 151 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWF 192
F +++ +L ++ Y+H NPYPS K ELA+ G+T +QVSNWF
Sbjct: 8 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWF 52
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration
calorimetry, protein-DNA complex, transcription/DNA
complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1akh_B* 1apl_C* 1yrn_B*
Length = 83
Score = 74.5 bits (183), Expect = 5e-17
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 341 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 393
F +++ +L W+ NPY + L + T L+ Q+ NW RR +++
Sbjct: 9 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64
Score = 65.6 bits (160), Expect = 9e-14
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 151 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFSSA-----NITSSPN 202
F +++ +L W+ NPY + L + T L+ Q+ NW ++ IT +P
Sbjct: 9 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPE 68
Query: 203 TSTSTASIS 211
+ +
Sbjct: 69 LADLLSGEP 77
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding,
transcription, nucleus, phosphoprotein, DNA bindi
protein; 1.95A {Homo sapiens}
Length = 67
Score = 70.8 bits (174), Expect = 8e-16
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Query: 341 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 388
F + + +++R W + H +PYPS +K++LA+ TGLT QV+NWF N R+R
Sbjct: 5 FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 55
Score = 64.3 bits (157), Expect = 1e-13
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 151 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWF 192
F + + +++R W + H +PYPS +K++LA+ TGLT QV+NWF
Sbjct: 5 FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWF 49
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 69.5 bits (170), Expect = 3e-15
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 341 FKEKSRS---VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 397
+KE++ L + NP P E L T +T ++ +WF RR++ A E K
Sbjct: 11 YKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKKS 70
Query: 398 SVHS 401
S
Sbjct: 71 GPSS 74
Score = 53.0 bits (127), Expect = 2e-09
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 151 FKEKSRS---VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
+KE++ L + NP P E L T +T ++ +WFS
Sbjct: 11 YKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFS 56
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein,
X-linked TGF(beta) induced transcription factor 2-like
protein, TGIF-like on the X; NMR {Homo sapiens}
Length = 83
Score = 69.8 bits (171), Expect = 3e-15
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 341 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 388
+S +LRDW Y H YPS EK+ L+E T L+ Q+SNWF N R+R
Sbjct: 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRR 64
Score = 63.6 bits (155), Expect = 4e-13
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 151 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWF 192
+S +LRDW Y H YPS EK+ L+E T L+ Q+SNWF
Sbjct: 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWF 58
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 73
Score = 69.3 bits (170), Expect = 3e-15
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 343 EKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 388
+ + +V+R W + H +PYP+ EK+++A T LT QV+NWF N R+R
Sbjct: 16 KHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 64
Score = 62.8 bits (153), Expect = 5e-13
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 153 EKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWF 192
+ + +V+R W + H +PYP+ EK+++A T LT QV+NWF
Sbjct: 16 KHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWF 58
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus
musculus} SCOP: a.4.1.1
Length = 64
Score = 68.5 bits (168), Expect = 4e-15
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 341 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 388
+++ +L ++ Y+H NPYPS K ELA+ G+T +QVSNWF N+R R
Sbjct: 10 MNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 60
Score = 62.7 bits (153), Expect = 4e-13
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 151 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFSSA 195
+++ +L ++ Y+H NPYPS K ELA+ G+T +QVSNWF +
Sbjct: 10 MNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNK 57
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast
structural genomics CON PSI-biology, transcription; NMR
{Homo sapiens}
Length = 89
Score = 67.9 bits (166), Expect = 1e-14
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 341 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 388
++S +LRDW Y H N YPS +EK L++ T L+T QV NWF N R+R
Sbjct: 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRR 62
Score = 62.1 bits (151), Expect = 1e-12
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 151 FKEKSRSVLRDW-YTH--NPYPSPREKRELAEATGLTTTQVSNWFSSA----------NI 197
++S +LRDW Y H N YPS +EK L++ T L+T QV NWF +A
Sbjct: 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71
Query: 198 TSSPNTSTSTASISPI 213
PN T + + I
Sbjct: 72 GKDPNQFTISRRGAKI 87
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 65.4 bits (159), Expect = 1e-13
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 341 FKEKSR---SVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKD 396
FKEK++ +L D + + +P+ E L T L+ ++ +WF RR+ + EQ
Sbjct: 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75
Score = 50.4 bits (120), Expect = 2e-08
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 151 FKEKSR---SVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
FKEK++ +L D + + +P+ E L T L+ ++ +WFS
Sbjct: 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFS 62
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 63.1 bits (153), Expect = 8e-13
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 341 FKEKSR---SVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395
FKEK+ VL+ + ++ + E L T LT ++ WF +++ E+K
Sbjct: 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEK 72
Score = 49.2 bits (117), Expect = 5e-08
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 151 FKEKSR---SVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
FKEK+ VL+ + ++ + E L T LT ++ WF+
Sbjct: 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFT 60
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 64.9 bits (157), Expect = 1e-12
Identities = 16/83 (19%), Positives = 31/83 (37%)
Query: 318 KYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQ 377
+ + + ++ F + R L + N PS + +++ GL +
Sbjct: 81 ACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELST 140
Query: 378 VSNWFKNRRQRDRAAEQKDGSVH 400
VSN+F N R+R + H
Sbjct: 141 VSNFFMNARRRSLDKWLEHHHHH 163
Score = 51.8 bits (123), Expect = 3e-08
Identities = 14/87 (16%), Positives = 33/87 (37%)
Query: 106 YKEVWKSPVKTYQSSSIIINIIKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYTH 165
++ +WK + + + + + + ++ F + R L +
Sbjct: 59 FRRMWKWLQEPEFQRMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKE 118
Query: 166 NPYPSPREKRELAEATGLTTTQVSNWF 192
N PS + +++ GL + VSN+F
Sbjct: 119 NKRPSKELQITISQQLGLELSTVSNFF 145
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 64.2 bits (156), Expect = 1e-12
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Query: 281 ESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYC 340
E+ Q S N KL+A+ L EAE++ VG +RK RT
Sbjct: 47 ENLQLSFKNACKLKAI-LSKWLEEAEQVGALYNEKVGANERKRK---RRT---------T 93
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
++ L + + PS +E +AE L V WF NRRQR++
Sbjct: 94 ISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREK 143
Score = 43.4 bits (102), Expect = 2e-05
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 13/83 (15%)
Query: 110 WKSPVKTYQSSSIIINIIKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYTHNPYP 169
W + + R R++ RT ++ L + + P
Sbjct: 66 WLEEAEQVGALYNEKVGANERKRKR----RT---------TISIAAKDALERHFGEHSKP 112
Query: 170 SPREKRELAEATGLTTTQVSNWF 192
S +E +AE L V WF
Sbjct: 113 SSQEIMRMAEELNLEKEVVRVWF 135
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.8 bits (160), Expect = 1e-11
Identities = 64/385 (16%), Positives = 113/385 (29%), Gaps = 127/385 (32%)
Query: 34 VPHDDRCCASELKSNQDRTCQQCSTITHRTTKSLAL---PTSR--LV---------PIQA 79
VP AS+L+ +Q + I T+ A PT+ LV ++
Sbjct: 22 VPTASFFIASQLQ-------EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP 74
Query: 80 HPQ------LALVLSY-----------QALASH-KSIFDKVVTSYKEVWKSPVKTYQSSS 121
L L L+ ALA+ D + KE+ +K Y ++
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL----IKNYITAR 130
Query: 122 IIINIIKYRVRRKFP---LPRTIWDGEETSY-----------CFKEKSRSVLRDWY-THN 166
I+ R K L R + +G F+E LRD Y T++
Sbjct: 131 IMAK----RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-----LRDLYQTYH 181
Query: 167 PYPSP-----REK-RELAEAT---------GLTTTQVSNWFSSANITSSPNTS-TSTASI 210
E EL T GL + W + + ++P+ + I
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGL---NILEWLENPS--NTPDKDYLLSIPI 236
Query: 211 SPILPSFGFTQEQVACVCEVLQQSG-NIERLGRFLWSLPACEKLHKNESVLKAKAMVA-- 267
S P G Q+A + G L +L ++ ++ A A+
Sbjct: 237 S--CPLIGVI--QLAHYVVTAKLLGFTPGELRSYLKGATGH-----SQGLVTAVAIAETD 287
Query: 268 ----FHRGNFKDLYRIL-----ESHQFSPHNHPKLQALWLKAH--YVEAEK--------L 308
F + + +L ++ P+ +L +E + +
Sbjct: 288 SWESFFV-SVRKAITVLFFIGVRCYEAYPN-----TSLPPSILEDSLENNEGVPSPMLSI 341
Query: 309 RGRPLGAVGKY--RVRRKFPLPRTI 331
V Y + P + +
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQV 366
Score = 51.2 bits (122), Expect = 5e-07
Identities = 44/245 (17%), Positives = 73/245 (29%), Gaps = 80/245 (32%)
Query: 193 SSANITSSPNTSTSTASISPIL----------PSFGFTQEQVACVCEVLQQSGNIERLGR 242
S ++ T++ I+ L P+ GF + + + E +G+
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD--------EPTTPAELVGK 63
Query: 243 FLW---SLPACEKLHKNESVLKAKAMVAFHRGNF---KDLYRILESH----QFSPHNHPK 292
FL SL K+ + + VL + F + D+ H + N
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNL-CLTEFEN-CYLEGNDI------HALAAKLLQENDTT 115
Query: 293 L--QALWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSY----------- 339
L +K Y+ A + RP + L R + +G
Sbjct: 116 LVKTKELIKN-YITARIMAKRPFDK------KSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 340 CFKEKSRSVLRDWY-THNPYPSP-----REK-RELAEAT---------GLTTTQVSNWFK 383
F+E LRD Y T++ E EL T GL + W +
Sbjct: 169 YFEE-----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL---NILEWLE 220
Query: 384 NRRQR 388
N
Sbjct: 221 NPSNT 225
Score = 36.2 bits (83), Expect = 0.025
Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 37/151 (24%)
Query: 132 RRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYTHNP-----YPSPREKRELAEATGLTTT 186
+ + +W+ FK+ + D +NP + + + + E
Sbjct: 1636 YKTSKAAQDVWN--RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN------ 1687
Query: 187 QVSNWFSSANITSSPNTSTST----ASISPILPSFGFTQEQVACVCEVLQQSGN----IE 238
+S+ + + T I+ S+ F E+ +L + +
Sbjct: 1688 -----YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK-----GLLSATQFTQPAL- 1736
Query: 239 RLGRFLWSLPACEKLHKNESVLKAKAMVAFH 269
L A E L K++ ++ A A A H
Sbjct: 1737 ----TLMEKAAFEDL-KSKGLIPADATFAGH 1762
Score = 28.5 bits (63), Expect = 5.2
Identities = 39/271 (14%), Positives = 76/271 (28%), Gaps = 117/271 (43%)
Query: 107 KEVW----KSPVKTYQSSSIIINIIKYRVRRKFPLPRTIWDGEETS------Y---CF-- 151
++VW TY S I++I+ P+ TI G E Y F
Sbjct: 1643 QDVWNRADNHFKDTYGFS--ILDIV-----INNPVNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 152 ----KEKSRSVLRDW------YTHNPYPSPREKRELAEAT--GLTTTQVSNW-------- 191
K K+ + ++ YT + S + + T LT + + +
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYT---FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 192 ------F------------SSANITS-----------------------SPNTSTSTASI 210
F S A++ S ++ +I
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 211 SPILPSFGFTQEQVACVCEVL-----------------QQ---SGN---IERLGRFLWSL 247
+P + F+QE + V E + QQ +G+ ++ + L
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL--- 1869
Query: 248 PACEKLHKNESVLKAKAMVAFHRGNFKD-LY 277
K + + + + + L+
Sbjct: 1870 ----NFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 58.2 bits (141), Expect = 3e-11
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 348 VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395
L+ + N +P E L + TGL+T +V WF +RR R +
Sbjct: 22 ALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69
Score = 45.1 bits (107), Expect = 1e-06
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 158 VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
L+ + N +P E L + TGL+T +V WFS
Sbjct: 22 ALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFS 57
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 58.9 bits (142), Expect = 1e-10
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 19/114 (16%)
Query: 281 ESHQFSPHNHPKLQAL---WL-KAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEE 336
E+ Q S N KL+ L WL + + A G+ R +R
Sbjct: 57 EALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNLDKIAAQGRKRKKRT------------ 104
Query: 337 TSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
+ + L + P PS E LA++ L V WF NRRQ+++
Sbjct: 105 ---SIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEK 155
Score = 40.4 bits (94), Expect = 3e-04
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
+ + L + P PS E LA++ L V WF
Sbjct: 105 SIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWF 147
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 56.1 bits (135), Expect = 1e-09
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 7/112 (6%)
Query: 281 ESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSY- 339
E+ S N KL+ L L+ +AE L + P
Sbjct: 51 EALNLSFKNMSKLKPL-LEKWLNDAEA----NLSSDSSLSSPSALNSPGIEGLSRRRKKR 105
Query: 340 -CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
+ R L + N P+ + +AE + + WF NRRQ+++
Sbjct: 106 TSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 157
Score = 40.7 bits (95), Expect = 2e-04
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
+ R L + N P+ + +AE + + WF
Sbjct: 107 SIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWF 149
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 53.3 bits (128), Expect = 1e-09
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 348 VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
L+ + + +P E L E TGL +++ WF + R R +
Sbjct: 18 HLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQ 60
Score = 43.6 bits (103), Expect = 3e-06
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 158 VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
L+ + + +P E L E TGL +++ WFS
Sbjct: 18 HLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFS 53
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 53.1 bits (128), Expect = 2e-09
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 397
+ VLR ++ N PS + +E+A+ +GL + +WF+N ++R + G
Sbjct: 14 ITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPSSG 70
Score = 38.5 bits (90), Expect = 2e-04
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
+ VLR ++ N PS + +E+A+ +GL + +WF
Sbjct: 14 ITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWF 55
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 80
Score = 50.6 bits (121), Expect = 1e-08
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 397
+ +L Y + P+ + +A GL V WF+N R R+R + G
Sbjct: 24 ITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPSSG 80
Score = 35.5 bits (82), Expect = 0.002
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
+ +L Y + P+ + +A GL V WF
Sbjct: 24 ITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWF 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 52.7 bits (126), Expect = 1e-08
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 281 ESHQFSPHNHPKLQAL---WLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEET 337
E +P + KL+ + WL + ++ + + VG +++ RT
Sbjct: 48 EKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKR--KRRT------- 98
Query: 338 SYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
F ++ L ++ NP P+ +E E+A+ V WF NRRQ +
Sbjct: 99 --SFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLK 149
Score = 38.1 bits (88), Expect = 0.001
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 150 CFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
F ++ L ++ NP P+ +E E+A+ V WF
Sbjct: 99 SFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWF 141
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 76
Score = 50.0 bits (119), Expect = 2e-08
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395
++ ++L+ ++ + + ++L + TGL ++ WF + R + + K
Sbjct: 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64
Score = 43.1 bits (101), Expect = 6e-06
Identities = 7/43 (16%), Positives = 21/43 (48%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
++ ++L+ ++ + + ++L + TGL ++ WF
Sbjct: 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFG 52
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 50.9 bits (121), Expect = 5e-08
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 11/110 (10%)
Query: 281 ESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYC 340
E+ Q S N KL+ L +VE + + RT
Sbjct: 54 EALQLSLKNMSKLRPL--LEKWVEEADNNENLQEISKSETLVQARKRKRT---------S 102
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
+ + R L + +P PS ++ +A GL V WF NRRQ+ +
Sbjct: 103 IENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGK 152
Score = 37.0 bits (85), Expect = 0.003
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
Query: 82 QLALVLSYQALASHKSIFDKVVTSYKEVWKSPVKTYQSSSIIINIIKYRVRRKFPLPRTI 141
AL LS + ++ + + +K V + + + +RK RT
Sbjct: 53 FEALQLSLKNMSKLRPLLEKWVEEADNNENLQEISKSETLV------QARKRK----RT- 101
Query: 142 WDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
+ + R L + +P PS ++ +A GL V WFS
Sbjct: 102 --------SIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFS 145
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB:
1f43_A 1yrn_A*
Length = 61
Score = 48.3 bits (116), Expect = 6e-08
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 348 VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 388
L + + + +EK E+A+ G+T QV WF N+R R
Sbjct: 19 FLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59
Score = 38.3 bits (90), Expect = 2e-04
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 158 VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
L + + + +EK E+A+ G+T QV WF
Sbjct: 19 FLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWF 53
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 49.0 bits (116), Expect = 8e-08
Identities = 14/65 (21%), Positives = 26/65 (40%)
Query: 326 PLPRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNR 385
P + +L+ + +PSP E +LA+ +GL T + +WF +
Sbjct: 17 QGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDT 76
Query: 386 RQRDR 390
R +
Sbjct: 77 RYAWK 81
Score = 42.5 bits (99), Expect = 1e-05
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 136 PLPRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
P + +L+ + +PSP E +LA+ +GL T + +WF
Sbjct: 17 QGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFG 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 9e-08
Identities = 54/400 (13%), Positives = 111/400 (27%), Gaps = 107/400 (26%)
Query: 65 KS-LALPTSRLVPIQAHPQLALV-LSYQALASHKSIFDKVVTSYKEV---WKSPVKTYQS 119
K+ +AL +Q + L+ + S +++ + + ++ W S +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 120 SSIIINIIKYRVRRKF---PLPRT------IWDGEETSYCFKEKSRSVL--RDWYTHNPY 168
+ I+ I+ +RR P + + + + F + +L R +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTDFL 281
Query: 169 PSPREKRELAE--ATGLTTTQVSNWFSSA---NITSSPNTSTSTASISPILPSFGFTQEQ 223
+ + + LT +V + P + +P
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRR--------- 329
Query: 224 VACVCEVLQQSGNIERLGRFLWSLPACEKLHK-NESVLKAKAMVAFHRGNFKDLYRILES 282
++ + E ++ + W C+KL ES L ++ ++ L
Sbjct: 330 LSIIAESIRD--GLATWDN--WKHVNCDKLTTIIESSLNV-----LEPAEYRKMFDRLSV 380
Query: 283 HQFSPHNH-PK--LQALWLKAHYVEAE----KLRGRPLGA-------------------- 315
F P H P L +W + KL L
Sbjct: 381 --FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 316 -----------VGKYRVRRKFP---LPRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSP 361
V Y + + F L D Y +Y+H +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ----Y------------FYSHIGHHL- 481
Query: 362 REKRELAEATGLTTTQVSN--WFKNRRQRDRAAEQKDGSV 399
+ E E L + + + + + D A GS+
Sbjct: 482 -KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Score = 39.5 bits (91), Expect = 0.002
Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 53/154 (34%)
Query: 219 FTQEQVACVCEVLQQSGNIERLGRFLWSLPACEKLHKNESVLKAKAMVAFHRGNFK---- 274
++E++ ++ + R W+L L K E +++ K + R N+K
Sbjct: 46 LSKEEID---HIIMSKDAVSGTLRLFWTL-----LSKQEEMVQ-KFVEEVLRINYKFLMS 96
Query: 275 -------------DLY-----RILESHQ-FSPHNHPKLQALW-LKAHYVEAEKLRGRP-- 312
+Y R+ +Q F+ +N +LQ L+ +LR
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA---LLELRPAKNV 153
Query: 313 ----LGAVGK----------YRVRRKFPLPRTIW 332
+ GK Y+V+ K + W
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDF-KIFW 186
Score = 34.8 bits (79), Expect = 0.055
Identities = 43/342 (12%), Positives = 97/342 (28%), Gaps = 97/342 (28%)
Query: 96 KSIFDKVVTSYKEVWKSPVKTYQSSSIIINIIKY--RVRRKFPLPRTIWDGEETSYCF-- 151
KSI K + S + + ++ + +KF + + +Y F
Sbjct: 43 KSILSK--EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-----VEEVLRINYKFLM 95
Query: 152 -----KEKSRSVLRDWY------THN------PYPSPREKRELAEATGLTTTQVSNWFSS 194
+++ S++ Y +N Y R + L L + +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-- 153
Query: 195 ANITSSPNTSTSTASISPIL---PSFGFTQEQVACVCEVLQQSGNIERL-GRFLW-SLPA 249
++ G + +V ++ + W +L
Sbjct: 154 ------------------LIDGVLGSG---KTW-VALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 250 CEKLHKNESVLKAKAMVAFHRGNFKDLYRILESHQFSPHNHPKLQALWLKAHYVEAEKLR 309
C + E+VL+ + L ++ + S +H + L+ H ++AE R
Sbjct: 192 C---NSPETVLE----------MLQKLLYQIDPNWTSRSDHS--SNIKLRIHSIQAELRR 236
Query: 310 GRPLGAVGKYRVRRKFP-----LPRTIWDGEETSYCFKEKSRSVL--RDWYTHNPYPSPR 362
+ + L + + + + F + +L R + +
Sbjct: 237 ---------LLKSKPYENCLLVL-LNVQNAKAWNA-FNLSCKILLTTRFKQVTDFLSAAT 285
Query: 363 EKRELAE--ATGLTTTQV----SNWFKNRRQRDRAAEQKDGS 398
+ + LT +V + R Q D E +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLPREVLTTN 326
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 46.7 bits (111), Expect = 2e-07
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 354 THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 397
+ YP + + L++ + ++ WF++RR +D+ + G
Sbjct: 29 SVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGPSSG 72
Score = 34.4 bits (79), Expect = 0.007
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 164 THNPYPSPREKRELAEATGLTTTQVSNWF 192
+ YP + + L++ + ++ WF
Sbjct: 29 SVTKYPDEKRLKGLSKQLDWSVRKIQCWF 57
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor,
structural genomics, loop insertion, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 95
Score = 47.3 bits (112), Expect = 3e-07
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 15/65 (23%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATG---------------LTTTQVSNWFKNR 385
++++ +V+ ++ N YP ++ E+A A +T+ +V NWF NR
Sbjct: 14 WRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANR 73
Query: 386 RQRDR 390
R+ +
Sbjct: 74 RKEIK 78
Score = 34.2 bits (78), Expect = 0.013
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 15/58 (25%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATG---------------LTTTQVSNWFS 193
++++ +V+ ++ N YP ++ E+A A +T+ +V NWF+
Sbjct: 14 WRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFA 71
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 46.0 bits (109), Expect = 4e-07
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 340 CFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
++ +L+ + YP L+ L + +F+N+R +
Sbjct: 13 KISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64
Score = 34.8 bits (80), Expect = 0.004
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 150 CFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFS 193
++ +L+ + YP L+ L + +F
Sbjct: 13 KISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQ 57
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein,
homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP:
a.4.1.1
Length = 66
Score = 45.4 bits (108), Expect = 6e-07
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395
EK LR Y NP P K +L E TGL+ + WF+N+R +D+
Sbjct: 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIM 64
Score = 32.7 bits (75), Expect = 0.019
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
EK LR Y NP P K +L E TGL+ + WF
Sbjct: 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQ 52
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 44.7 bits (106), Expect = 1e-06
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 397
F + VL+D++ N YP E +L+ L T + WF+N RQ+ R + G
Sbjct: 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPSSG 70
Score = 31.9 bits (73), Expect = 0.049
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
F + VL+D++ N YP E +L+ L T + WF
Sbjct: 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQ 56
>2e19_A Transcription factor 8; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 64
Score = 41.6 bits (97), Expect = 1e-05
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 343 EKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 393
+ S+L+ +Y N PS E ++A++ L V WF+ + + +
Sbjct: 12 KNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62
Score = 34.2 bits (78), Expect = 0.007
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 153 EKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTST 205
+ S+L+ +Y N PS E ++A++ L V WF S+
Sbjct: 12 KNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQSS 64
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 40.8 bits (96), Expect = 2e-05
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 355 HNPYPSPREKRELAEATGLTTTQVSNWFKNRR 386
Y + E+ LA+A +T QV WF+NRR
Sbjct: 18 RQKYLASAERAALAKALRMTDAQVKTWFQNRR 49
Score = 32.7 bits (75), Expect = 0.018
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 165 HNPYPSPREKRELAEATGLTTTQVSNWF 192
Y + E+ LA+A +T QV WF
Sbjct: 18 RQKYLASAERAALAKALRMTDAQVKTWF 45
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 41.8 bits (98), Expect = 2e-05
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 355 HNPYPSPREKRELAEATGLTTTQVSNWFKNRR---QRDRAAEQK 395
Y + E+ LA +T QV WF+NRR +R A E++
Sbjct: 38 KQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEERE 81
Score = 32.5 bits (74), Expect = 0.040
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 165 HNPYPSPREKRELAEATGLTTTQVSNWF 192
Y + E+ LA +T QV WF
Sbjct: 38 KQKYLASAERAALARGLKMTDAQVKTWF 65
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 64
Score = 40.9 bits (96), Expect = 3e-05
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 354 THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 397
+P + L++ + WF+ RR +++ + G
Sbjct: 21 AITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGPSSG 64
Score = 30.5 bits (69), Expect = 0.11
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 164 THNPYPSPREKRELAEATGLTTTQVSNWF 192
+P + L++ + WF
Sbjct: 21 AITKHPDEKRLEGLSKQLDWDVRSIQRWF 49
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein, transcription
regulation, NUC homeobox; 2.6A {Mus musculus}
Length = 62
Score = 40.3 bits (95), Expect = 4e-05
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 349 LRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 386
L+D + Y S ++ +EL+ L+ QV WF+N+R
Sbjct: 18 LKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQR 55
Score = 32.3 bits (74), Expect = 0.028
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 159 LRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
L+D + Y S ++ +EL+ L+ QV WF
Sbjct: 18 LKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWF 51
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 39.9 bits (94), Expect = 4e-05
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 355 HNPYPSPREKRELAEATGLTTTQVSNWFKNRR 386
Y S E+ +LA LT+TQV WF+NRR
Sbjct: 23 QQRYLSAPERDQLASVLKLTSTQVKIWFQNRR 54
Score = 31.8 bits (73), Expect = 0.032
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 165 HNPYPSPREKRELAEATGLTTTQVSNWF 192
Y S E+ +LA LT+TQV WF
Sbjct: 23 QQRYLSAPERDQLASVLKLTSTQVKIWF 50
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 40.4 bits (95), Expect = 4e-05
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 355 HNPYPSPREKRELAEATGLTTTQVSNWFKNRR------QRDRAAEQ 394
Y S E+ LA LT TQV WF+N R +D+AA+Q
Sbjct: 23 QQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQ 68
Score = 31.9 bits (73), Expect = 0.039
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 165 HNPYPSPREKRELAEATGLTTTQVSNWF 192
Y S E+ LA LT TQV WF
Sbjct: 23 QQKYLSAPEREHLASMIHLTPTQVKIWF 50
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 40.1 bits (94), Expect = 7e-05
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 355 HNPYPSPREKRELAEATGLTTTQVSNWFKNRR---QRDRAAEQKDGS 398
Y S E+ LA LT TQV WF+N R +R + + +G
Sbjct: 30 QQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGH 76
Score = 30.9 bits (70), Expect = 0.11
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 165 HNPYPSPREKRELAEATGLTTTQVSNWF 192
Y S E+ LA LT TQV WF
Sbjct: 30 QQRYLSAPEREHLASLIRLTPTQVKIWF 57
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 39.7 bits (93), Expect = 8e-05
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 356 NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 393
N +P P +A GLT Q WFK R R +E
Sbjct: 25 NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62
Score = 29.3 bits (66), Expect = 0.44
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 166 NPYPSPREKRELAEATGLTTTQVSNWFS 193
N +P P +A GLT Q WF
Sbjct: 25 NKHPDPTTLCLIAAEAGLTEEQTQKWFK 52
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 39.2 bits (92), Expect = 9e-05
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 355 HNPYPSPREKRELAEATGLTTTQVSNWFKNRR 386
Y S E+ E + + LT TQV WF+NRR
Sbjct: 21 QKQYLSIAERAEFSSSLSLTETQVKIWFQNRR 52
Score = 31.1 bits (71), Expect = 0.075
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 165 HNPYPSPREKRELAEATGLTTTQVSNWF 192
Y S E+ E + + LT TQV WF
Sbjct: 21 QKQYLSIAERAEFSSSLSLTETQVKIWF 48
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 39.3 bits (92), Expect = 1e-04
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 355 HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 397
Y SP E++ LA+ L+ QV WF+NRR + R + G
Sbjct: 28 TQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPSSG 70
Score = 30.9 bits (70), Expect = 0.092
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 165 HNPYPSPREKRELAEATGLTTTQVSNWF 192
Y SP E++ LA+ L+ QV WF
Sbjct: 28 TQKYLSPPERKRLAKMLQLSERQVKTWF 55
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 41.8 bits (97), Expect = 1e-04
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 21/71 (29%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEA---------------------TGLTTTQVS 379
+ S+ +L Y PS E+ L E +T +V
Sbjct: 122 WGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 181
Query: 380 NWFKNRRQRDR 390
NWF NRR+ +
Sbjct: 182 NWFANRRKEEA 192
Score = 30.6 bits (68), Expect = 0.67
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 21/64 (32%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEA---------------------TGLTTTQVS 189
+ S+ +L Y PS E+ L E +T +V
Sbjct: 122 WGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 181
Query: 190 NWFS 193
NWF+
Sbjct: 182 NWFA 185
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for eukaryotic
structural genomics; NMR {Homo sapiens}
Length = 84
Score = 39.0 bits (91), Expect = 2e-04
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 349 LRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 386
L D + Y S ++ +EL+ L+ QV WF+N+R
Sbjct: 37 LNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQR 74
Score = 31.3 bits (71), Expect = 0.096
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 159 LRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
L D + Y S ++ +EL+ L+ QV WF
Sbjct: 37 LNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWF 70
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 39.0 bits (91), Expect = 2e-04
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395
FK ++ ++ N P ++ ++LA+ TGLT + WF+N R + R +
Sbjct: 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68
Score = 27.8 bits (62), Expect = 1.7
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
FK ++ ++ N P ++ ++LA+ TGLT + WF
Sbjct: 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQ 56
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 38.6 bits (90), Expect = 2e-04
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 355 HNPYPSPREKRELAEATGLTTTQVSNWFKNRR 386
Y S ++ +LAE+ GL+ QV W++NRR
Sbjct: 38 KQKYLSTPDRIDLAESLGLSQLQVKTWYQNRR 69
Score = 30.5 bits (69), Expect = 0.17
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 165 HNPYPSPREKRELAEATGLTTTQVSNWF 192
Y S ++ +LAE+ GL+ QV W+
Sbjct: 38 KQKYLSTPDRIDLAESLGLSQLQVKTWY 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Homo sapiens}
Length = 69
Score = 38.5 bits (90), Expect = 2e-04
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 355 HNPYPSPREKRELAEATGLTTTQVSNWFKNRR 386
H Y S E+ LA+ LT TQV WF+NRR
Sbjct: 25 HQKYLSAPERAHLAKNLKLTETQVKIWFQNRR 56
Score = 30.4 bits (69), Expect = 0.17
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 165 HNPYPSPREKRELAEATGLTTTQVSNWF 192
H Y S E+ LA+ LT TQV WF
Sbjct: 25 HQKYLSAPERAHLAKNLKLTETQVKIWF 52
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 38.2 bits (89), Expect = 3e-04
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 355 HNPYPSPREKRELAEATGLTTTQVSNWFKNRR 386
Y + E+ ELA + GLT TQV WF+N+R
Sbjct: 28 KTQYLALPERAELAASLGLTQTQVKIWFQNKR 59
Score = 30.1 bits (68), Expect = 0.22
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 165 HNPYPSPREKRELAEATGLTTTQVSNWF 192
Y + E+ ELA + GLT TQV WF
Sbjct: 28 KTQYLALPERAELAASLGLTQTQVKIWF 55
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 37.8 bits (87), Expect = 3e-04
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 347 SVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGS 398
SVL+ +Y N P+ E +++ A GL V WF+ R+ + + S
Sbjct: 18 SVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQYSNSRSGPS 69
Score = 36.3 bits (83), Expect = 0.001
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 157 SVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSANITSSPNTSTSTAS 209
SVL+ +Y N P+ E +++ A GL V WF + N+ + +S
Sbjct: 18 SVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQYSNSRSGPSS 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A
{Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 38.7 bits (89), Expect = 4e-04
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 21/71 (29%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEA---------------------TGLTTTQVS 379
+ S+ +L Y PS E+ L E +T +V
Sbjct: 16 WGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 75
Query: 380 NWFKNRRQRDR 390
NWF NRR+ +
Sbjct: 76 NWFANRRKEEA 86
Score = 29.0 bits (64), Expect = 0.94
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 21/64 (32%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEA---------------------TGLTTTQVS 189
+ S+ +L Y PS E+ L E +T +V
Sbjct: 16 WGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 75
Query: 190 NWFS 193
NWF+
Sbjct: 76 NWFA 79
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix,
helix-turn-helix; NMR {Drosophila melanogaster} SCOP:
a.4.1.1
Length = 68
Score = 36.2 bits (84), Expect = 0.001
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 355 HNPYPSPREKRELAEATGLTTTQVSNWFKNRR 386
Y + +L+ L T QV WFKNRR
Sbjct: 23 QGRYLTAPRLADLSAKLALGTAQVKIWFKNRR 54
Score = 27.8 bits (62), Expect = 1.4
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 165 HNPYPSPREKRELAEATGLTTTQVSNWF 192
Y + +L+ L T QV WF
Sbjct: 23 QGRYLTAPRLADLSAKLALGTAQVKIWF 50
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 38.8 bits (89), Expect = 0.001
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 21/71 (29%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEA---------------------TGLTTTQVS 379
+ S+ +L Y PS E+ L E +T +V
Sbjct: 149 WGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVY 208
Query: 380 NWFKNRRQRDR 390
NWF NRR+ +
Sbjct: 209 NWFANRRKEEA 219
Score = 28.4 bits (62), Expect = 4.2
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 21/64 (32%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEA---------------------TGLTTTQVS 189
+ S+ +L Y PS E+ L E +T +V
Sbjct: 149 WGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVY 208
Query: 190 NWFS 193
NWF+
Sbjct: 209 NWFA 212
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB:
2ld5_A*
Length = 73
Score = 35.2 bits (81), Expect = 0.004
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 353 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGS 398
Y N + + ++R ++ T L+ QV+ WF+NRR +++ K +
Sbjct: 26 YATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKT 71
Score = 26.7 bits (59), Expect = 3.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 163 YTHNPYPSPREKRELAEATGLTTTQVSNWF 192
Y N + + ++R ++ T L+ QV+ WF
Sbjct: 26 YATNKFITKDKRRRISATTNLSERQVTIWF 55
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 35.0 bits (81), Expect = 0.004
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 356 NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 393
N +P P +A GLT Q WFK R R +E
Sbjct: 24 NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 35.6 bits (81), Expect = 0.004
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 21/70 (30%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEA---------------------TGLTTTQVS 379
+ S+ +L Y PS E+ L E +T +V
Sbjct: 13 WGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVY 72
Query: 380 NWFKNRRQRD 389
NWF NRR+ +
Sbjct: 73 NWFANRRKEE 82
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA
binding helix- turn-helix motif, structural genomics,
NPPSFA; NMR {Mus musculus}
Length = 80
Score = 35.1 bits (81), Expect = 0.004
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 354 THNPYPSPREKRELAEATGLTTTQVSNWFKNRR----QRDRAAEQKDGSVHS 401
T P RE E+A L ++V WFKNRR Q+ + + S S
Sbjct: 29 TRYPDIFMRE--EVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQSGPS 78
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 34.2 bits (79), Expect = 0.006
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 353 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
+ Y S + ELA L + + WF+NRR +D+
Sbjct: 20 FYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDK 57
Score = 25.4 bits (56), Expect = 6.4
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 163 YTHNPYPSPREKRELAEATGLTTTQVSNWF 192
+ Y S + ELA L + + WF
Sbjct: 20 FYKENYVSRPRRCELAAQLNLPESTIKVWF 49
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 70
Score = 34.4 bits (79), Expect = 0.006
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 356 NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 397
N + + ++R+++ AT L+ Q++ WF+NRR +++ + G
Sbjct: 29 NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPSSG 70
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 33.8 bits (78), Expect = 0.007
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 353 YTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 386
+ N Y + R +++L+ GL Q+ WFKN+R
Sbjct: 22 FNENRYLTERRRQQLSSELGLNEAQIKIWFKNKR 55
Score = 25.8 bits (57), Expect = 5.1
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 163 YTHNPYPSPREKRELAEATGLTTTQVSNWF 192
+ N Y + R +++L+ GL Q+ WF
Sbjct: 22 FNENRYLTERRRQQLSSELGLNEAQIKIWF 51
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 33.9 bits (78), Expect = 0.008
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 354 THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 397
T P RE +LA L +V WFKNRR + R + G
Sbjct: 29 TKYPDVGTRE--QLARKVHLREEKVEVWFKNRRAKWRRSGPSSG 70
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 34.5 bits (79), Expect = 0.009
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 356 NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 397
N Y S + E+A L TQV WF+NRR + + E++ G
Sbjct: 56 NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREGG 97
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 33.4 bits (77), Expect = 0.012
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 354 THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394
P S RE E+A T LT +V WFKNRR + R E+
Sbjct: 25 NRYPDMSTRE--EIAVWTNLTEARVRVWFKNRRAKWRKREE 63
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding
cooperativity, maltose binding protein, MBP, sugar
binding, DNA binding protein; 2.10A {Escherichia coli}
SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Length = 421
Score = 36.7 bits (85), Expect = 0.013
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 342 KEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
++R+ L + + +EK E+A+ G+T QV WF N+R R +
Sbjct: 373 SPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant,
DNA binding protein, developmental protein, disease
mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 33.1 bits (76), Expect = 0.014
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 354 THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394
P E +LA+ L ++ WF+NRR + + + +
Sbjct: 23 NCYPGIDILE--DLAQKLNLELDRIQIWFQNRRAKLKRSHR 61
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA
complex, transcription/DNA complex; 2.42A {Mesocricetus
auratus}
Length = 63
Score = 33.1 bits (76), Expect = 0.015
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 355 HNPYPSPREKRELAEATGLTTTQVSNWFKNRR 386
N Y S + ELA LT + WF+NRR
Sbjct: 24 FNKYISRPRRVELAVMLNLTERHIKIWFQNRR 55
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 33.0 bits (76), Expect = 0.016
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 354 THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394
TH P RE ELA GLT ++ WF+NRR + R E+
Sbjct: 21 THYPDVFTRE--ELAMKIGLTEARIQVWFQNRRAKWRKQEK 59
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 33.2 bits (76), Expect = 0.018
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 356 NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGS 398
N Y + R + E+A A LT Q+ WF+NRR + + + G
Sbjct: 24 NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKGE 66
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 33.3 bits (76), Expect = 0.019
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 356 NPYPSPREKRELAEATGLTTTQVSNWFKNRR 386
N Y + R + E+A A LT Q+ WF+NRR
Sbjct: 50 NRYLTRRRRIEIAHALSLTERQIKIWFQNRR 80
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 32.9 bits (75), Expect = 0.024
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 356 NPYPSPREKRELAEATGLTTTQVSNWFKNRR 386
N Y + R + E+A A LT Q+ WF+NRR
Sbjct: 42 NHYLTRRRRIEMAHALSLTERQIKIWFQNRR 72
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 32.7 bits (75), Expect = 0.029
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 354 THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394
T P RE ELA+ T LT ++ WF+NRR R R
Sbjct: 40 TQYPDIYTRE--ELAQRTNLTEARIQVWFQNRRARLRKQHT 78
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex,
HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 32.5 bits (74), Expect = 0.031
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 356 NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDG 397
N Y + + E+A LT QV WF+NRR + + +
Sbjct: 35 NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRA 76
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.034
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 28/56 (50%)
Query: 251 EK--LHKNESVLKAKAMVAFHRGNFKDLYRILESHQFSPHNHPKLQALWLKAHYVE 304
EK L K ++ LK LY + + P AL +KA +E
Sbjct: 18 EKQALKKLQASLK--------------LY--------ADDSAP---ALAIKAT-ME 47
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 32.2 bits (72), Expect = 0.040
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 341 FKEKSRSVLRDWY----THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
F ++ + L+ ++ T + +A + V W NRR++ R
Sbjct: 15 FSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYR 68
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 32.4 bits (74), Expect = 0.041
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 354 THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQ 394
TH P RE LA L ++ WF NRR + R E+
Sbjct: 29 THYPDVFARE--RLAAKIDLPEARIQVWFSNRRAKWRREEK 67
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A
{Enterobacteria phage lambda}
Length = 236
Score = 33.0 bits (75), Expect = 0.14
Identities = 4/31 (12%), Positives = 9/31 (29%)
Query: 365 RELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395
+A+ G+ + V F +
Sbjct: 34 ESVADKMGMGQSGVGALFNGINALNAYNAAL 64
Score = 29.2 bits (65), Expect = 2.0
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 175 RELAEATGLTTTQVSNWFSSANITSSPN 202
+A+ G+ + V F+ N ++ N
Sbjct: 34 ESVADKMGMGQSGVGALFNGINALNAYN 61
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.65A
{Bacteroides fragilis}
Length = 76
Score = 29.2 bits (66), Expect = 0.41
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 365 RELAEATGLTTTQVSNWFKNRRQ 387
R LAE G + +S W N+ Q
Sbjct: 27 RWLAEQMGKSENTISRWCSNKSQ 49
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding
protein, binding protein; NMR {Enterobacteria phage P2}
PDB: 2xcj_A
Length = 99
Score = 29.9 bits (67), Expect = 0.46
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 365 RELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGSVHSFRV 404
++LA+ TG+ +S + R F
Sbjct: 21 QQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTK 60
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.58
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 31/99 (31%)
Query: 304 EAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYC--FKEKSRSVLRDWYTHNPYPSP 361
E E +R K+R ++ L D ++EK++ L +W
Sbjct: 83 EPESIR--------KWREEQRKRLQEL--DAASKVMEQEWREKAKKDLEEWN-------- 124
Query: 362 REKRELAEATGLTTTQVSNWFKNRRQRDRA-AEQKDGSV 399
+++ QV N R D+A +Q D +
Sbjct: 125 -QRQS---------EQVEKNKINNRIADKAFYQQPDADI 153
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; 1.65A {Cytophaga hutchinsonii}
Length = 73
Score = 28.0 bits (63), Expect = 0.95
Identities = 8/23 (34%), Positives = 8/23 (34%)
Query: 365 RELAEATGLTTTQVSNWFKNRRQ 387
L E T VS W N Q
Sbjct: 25 LWLTETLDKNKTTVSKWCTNDVQ 47
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural
genomics, PSI-2, protein structure initiative; NMR
{Eubacterium rectale atcc 33656}
Length = 94
Score = 28.2 bits (63), Expect = 1.7
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 362 REKR-----ELAEATGLTTTQVSNWFKNRRQ 387
K E+A++ G++ + W K
Sbjct: 18 IAKSEKTQLEIAKSIGVSPQTFNTWCKGIAI 48
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo
sapiens}
Length = 460
Score = 29.4 bits (65), Expect = 2.2
Identities = 13/59 (22%), Positives = 19/59 (32%)
Query: 276 LYRILESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDG 334
L + + L A Y+ EK RG L V + ++ L R W
Sbjct: 349 LSSSEWVQSEKLVRALQTPLMRLCAWYLYGEKHRGYALNPVANFHLQNGAVLWRINWMA 407
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434}
SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A
2r63_A 1sq8_A
Length = 69
Score = 26.8 bits (60), Expect = 3.0
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 365 RELAEATGLTTTQVSNWFKNRRQRDR 390
ELA+ G T + + +R R
Sbjct: 18 AELAQKVGTTQQSIEQLENGKTKRPR 43
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription
regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A
3cro_L*
Length = 71
Score = 26.5 bits (59), Expect = 3.7
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 366 ELAEATGLTTTQVSNWFKNRRQRDR 390
ELA G+ + +R R
Sbjct: 21 ELATKAGVKQQSIQLIEAGVTKRPR 45
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA
binding protein; 1.60A {Trypanosoma brucei} SCOP:
a.4.5.46
Length = 92
Score = 26.6 bits (59), Expect = 5.9
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 118 QSSSIIINIIKYRVRRKFPLP 138
S ++++ VRR+ PLP
Sbjct: 72 PSEKLVLSEDGLMVRRRDPLP 92
>1c5a_A Complement C5A anaphylatoxin; complement factor; NMR {Sus scrofa
domestica} SCOP: a.50.1.1
Length = 73
Score = 26.0 bits (57), Expect = 6.5
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 32 YRVPHDDRCCASELKSNQDRTCQQ 55
Y+ +CC N D TC++
Sbjct: 13 YKYAMLKKCCYDGAYRNDDETCEE 36
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
transcription regulat; HET: MSE; 1.90A {Listeria
innocua}
Length = 114
Score = 26.7 bits (59), Expect = 7.6
Identities = 4/31 (12%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 362 REKR-----ELAEATGLTTTQVSNWFKNRRQ 387
+++ ++AE + T V+ + +
Sbjct: 18 KKEHGLKNHQIAELLNVQTRTVAYYMSGETK 48
>2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide
synthesis, alpha/beta- hydrolases, catalytic triade,
hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A*
Length = 244
Score = 27.5 bits (61), Expect = 8.0
Identities = 4/37 (10%), Positives = 10/37 (27%), Gaps = 9/37 (24%)
Query: 68 ALPTSRLVPIQA---------HPQLALVLSYQALASH 95
A ++ + P + ++ LA
Sbjct: 8 AAGEQHVIQLNQQGGKNLFCFPPISGFGIYFKDLALQ 44
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F,
structural GE oxidoreductase; HET: NDP; 1.60A
{Escherichia coli} SCOP: c.1.7.1
Length = 346
Score = 27.5 bits (62), Expect = 8.6
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 358 YPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
YP P E GLT T V NW R++
Sbjct: 53 YPVPPR----PETQGLTETYVGNWLAKHGSREK 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.130 0.403
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,152,004
Number of extensions: 348339
Number of successful extensions: 1158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1133
Number of HSP's successfully gapped: 169
Length of query: 414
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 318
Effective length of database: 4,021,377
Effective search space: 1278797886
Effective search space used: 1278797886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)