RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14872
(414 letters)
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 64.8 bits (158), Expect = 3e-14
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 341 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 388
+ + +V+R W +PYP+ EK+++A T LT QV+NWF N R+R
Sbjct: 9 LPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 59
Score = 53.6 bits (129), Expect = 3e-10
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 151 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWF 192
+ + +V+R W +PYP+ EK+++A T LT QV+NWF
Sbjct: 9 LPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWF 53
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 63.2 bits (154), Expect = 1e-13
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 334 GEETSYCFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
G + S K + L + YP + + L++ + ++ WF++RR +D+
Sbjct: 1 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
Score = 49.4 bits (118), Expect = 9e-09
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 144 GEETSYCFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWF 192
G + S K + L + YP + + L++ + ++ WF
Sbjct: 1 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWF 50
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 62.1 bits (151), Expect = 2e-13
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 341 FKEKSRSVLRDWY---THNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 391
F +++ +L W+ NPY + L + T L+ Q+ NW NRR++++
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
Score = 49.4 bits (118), Expect = 8e-09
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 151 FKEKSRSVLRDWY---THNPYPSPREKRELAEATGLTTTQVSNWFSSA 195
F +++ +L W+ NPY + L + T L+ Q+ NW S+
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNR 52
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 58.8 bits (142), Expect = 6e-12
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 341 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395
F +++ +L +++ NPYPS K ELA+ G+T +QVSNWF N+R R + K
Sbjct: 8 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65
Score = 45.3 bits (107), Expect = 3e-07
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 151 FKEKSRSVLRDWYT---HNPYPSPREKRELAEATGLTTTQVSNWFSSA 195
F +++ +L +++ NPYPS K ELA+ G+T +QVSNWF +
Sbjct: 8 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNK 55
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 56.3 bits (136), Expect = 3e-11
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 347 SVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
++L +T +P + L++ + WF+ RR +++
Sbjct: 6 AILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 50
Score = 42.0 bits (99), Expect = 2e-06
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 157 SVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWF 192
++L +T +P + L++ + WF
Sbjct: 6 AILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWF 42
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 54.9 bits (132), Expect = 7e-11
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
++R+ L + + +EK E+A+ G+T QV WF N+R R +
Sbjct: 4 ISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
Score = 42.2 bits (99), Expect = 2e-06
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
++R+ L + + +EK E+A+ G+T QV WF
Sbjct: 4 ISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWF 45
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 52.5 bits (126), Expect = 8e-10
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
EK LR Y NP P K +L E TGL+ + WF+N+R +D+
Sbjct: 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDK 59
Score = 39.1 bits (91), Expect = 4e-05
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
EK LR Y NP P K +L E TGL+ + WF
Sbjct: 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWF 51
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 51.4 bits (123), Expect = 1e-09
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 328 PRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 386
PR + F + R L + N PS + +++ GL + VSN+F N R
Sbjct: 1 PRLV---------FTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
Score = 42.9 bits (101), Expect = 1e-06
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 138 PRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
PR + F + R L + N PS + +++ GL + VSN+F
Sbjct: 1 PRLV---------FTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFF 46
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 50.9 bits (122), Expect = 2e-09
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
+ L + N Y + R + E+A A LT Q+ WF+NRR + +
Sbjct: 4 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWK 53
Score = 38.6 bits (90), Expect = 4e-05
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
+ L + N Y + R + E+A A LT Q+ WF
Sbjct: 4 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWF 45
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 50.9 bits (122), Expect = 2e-09
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395
F ++ L + YP + LA L ++ WF NRR + R E+
Sbjct: 8 FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 62
Score = 37.8 bits (88), Expect = 1e-04
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
F ++ L + YP + LA L ++ WFS
Sbjct: 8 FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFS 50
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 51.2 bits (122), Expect = 4e-09
Identities = 7/51 (13%), Positives = 14/51 (27%)
Query: 342 KEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 392
KEK + + TG+ + W N + ++
Sbjct: 29 KEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79
Score = 40.0 bits (93), Expect = 3e-05
Identities = 6/41 (14%), Positives = 10/41 (24%)
Query: 152 KEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
KEK + + TG+ + W
Sbjct: 29 KEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWM 69
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 49.9 bits (119), Expect = 5e-09
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
+ R L + N P+ + +AE + + WF NRRQ+++
Sbjct: 5 IETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 54
Score = 39.5 bits (92), Expect = 3e-05
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFSSA 195
+ R L + N P+ + +AE + + WFS+
Sbjct: 5 IETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNR 49
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 49.8 bits (119), Expect = 6e-09
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
F L + Y SP E++ LA+ L+ QV WF+NRR + R
Sbjct: 7 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWR 56
Score = 37.1 bits (86), Expect = 2e-04
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
F L + Y SP E++ LA+ L+ QV WF
Sbjct: 7 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWF 48
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 49.1 bits (117), Expect = 8e-09
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
++ L + + PS +E +AE L V WF NRRQR++
Sbjct: 6 ISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREK 55
Score = 36.8 bits (85), Expect = 2e-04
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
++ L + + PS +E +AE L V WF
Sbjct: 6 ISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFC 48
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 49.1 bits (117), Expect = 1e-08
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
F L + YP + ELA+ T LT ++ WF+NRR R R
Sbjct: 9 FSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLR 58
Score = 37.2 bits (86), Expect = 2e-04
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
F L + YP + ELA+ T LT ++ WF
Sbjct: 9 FSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWF 50
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 49.4 bits (118), Expect = 1e-08
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395
+ + L + N Y + + E+A LT QV WF+NRR + + +
Sbjct: 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74
Score = 37.1 bits (86), Expect = 3e-04
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
+ + L + N Y + + E+A LT QV WF
Sbjct: 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWF 61
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 48.4 bits (115), Expect = 2e-08
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAE 393
F + L + N YP + E+A T LT +V WFKNRR + R E
Sbjct: 8 FTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 60
Score = 36.5 bits (84), Expect = 3e-04
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
F + L + N YP + E+A T LT +V WF
Sbjct: 8 FTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFK 50
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 48.8 bits (116), Expect = 3e-08
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395
F + + L + N Y S + E+A L TQV WF+NRR + + E++
Sbjct: 34 FTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 88
Score = 35.4 bits (81), Expect = 0.001
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
F + + L + N Y S + E+A L TQV WF
Sbjct: 34 FTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWF 75
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 46.8 bits (111), Expect = 5e-08
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 388
F + + L+ + N Y + R +++L+ GL Q+ WF+N R +
Sbjct: 6 FSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
Score = 37.1 bits (86), Expect = 2e-04
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
F + + L+ + N Y + R +++L+ GL Q+ WF
Sbjct: 6 FSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWF 47
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 46.8 bits (111), Expect = 6e-08
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
+ + L Y N + + ++R+++ AT L+ Q++ WF+NRR +++
Sbjct: 8 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEK 57
Score = 34.1 bits (78), Expect = 0.002
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
+ + L Y N + + ++R+++ AT L+ Q++ WF
Sbjct: 8 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWF 49
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 47.4 bits (112), Expect = 6e-08
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 341 FKEKSRS---VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395
FKEK+ VL+ + ++ + E L T LT ++ WF +++ E+K
Sbjct: 8 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEK 65
Score = 34.3 bits (78), Expect = 0.003
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 151 FKEKSRS---VLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
FKEK+ VL+ + ++ + E L T LT ++ WF+
Sbjct: 8 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFT 53
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 46.3 bits (109), Expect = 2e-07
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 21/75 (28%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEAT---------------------GLTTTQVS 379
+ S+ +L Y PS E+ L E +T +V
Sbjct: 4 WGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 63
Query: 380 NWFKNRRQRDRAAEQ 394
NWF NRR+ + +
Sbjct: 64 NWFANRRKEEAFRHK 78
Score = 33.6 bits (76), Expect = 0.006
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 21/63 (33%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEAT---------------------GLTTTQVS 189
+ S+ +L Y PS E+ L E +T +V
Sbjct: 4 WGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 63
Query: 190 NWF 192
NWF
Sbjct: 64 NWF 66
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 45.8 bits (108), Expect = 2e-07
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
+ + R L + P PS ++ +A GL V WF NRRQ+ +
Sbjct: 15 IENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGK 64
Score = 33.1 bits (75), Expect = 0.005
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
+ + R L + P PS ++ +A GL V WF
Sbjct: 15 IENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWF 56
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 46.2 bits (109), Expect = 2e-07
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 15/67 (22%)
Query: 339 YCFKEKSRSVLRDWYTHNPYPSPREKRELAE---------------ATGLTTTQVSNWFK 383
+ ++++ +V+ ++ N YP ++ E+A +T+ +V NWF
Sbjct: 5 FTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFA 64
Query: 384 NRRQRDR 390
NRR+ +
Sbjct: 65 NRRKEIK 71
Score = 33.5 bits (76), Expect = 0.007
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 15/59 (25%)
Query: 149 YCFKEKSRSVLRDWYTHNPYPSPREKRELAE---------------ATGLTTTQVSNWF 192
+ ++++ +V+ ++ N YP ++ E+A +T+ +V NWF
Sbjct: 5 FTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWF 63
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 44.9 bits (106), Expect = 3e-07
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
F L + Y S + ELA L + + WF+NRR +D+
Sbjct: 6 FTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDK 55
Score = 32.2 bits (73), Expect = 0.009
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
F L + Y S + ELA L + + WF
Sbjct: 6 FTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWF 47
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 44.9 bits (106), Expect = 4e-07
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
F + L + Y S E+ LA LT TQV WF+N R + +
Sbjct: 9 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 58
Score = 33.0 bits (75), Expect = 0.006
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
F + L + Y S E+ LA LT TQV WF
Sbjct: 9 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWF 50
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 44.7 bits (105), Expect = 5e-07
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 342 KEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
E + + YP L+ L + +F+N+R +
Sbjct: 16 LEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64
Score = 33.1 bits (75), Expect = 0.006
Identities = 6/41 (14%), Positives = 11/41 (26%)
Query: 152 KEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
E + + YP L+ L + +F
Sbjct: 16 LEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFF 56
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 42.6 bits (100), Expect = 2e-06
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR--AAEQKDGS 398
F + L + Y + +L+ L T QV WFKNRR+R + + + KD S
Sbjct: 8 FTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQS 67
Score = 29.1 bits (65), Expect = 0.13
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
F + L + Y + +L+ L T QV WF
Sbjct: 8 FTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWF 49
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 42.2 bits (99), Expect = 2e-06
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 390
F L + Y S E+ E + + LT TQV WF+NRR + +
Sbjct: 7 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 56
Score = 29.5 bits (66), Expect = 0.091
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
F L + Y S E+ E + + LT TQV WF
Sbjct: 7 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWF 48
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 42.3 bits (99), Expect = 4e-06
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQKDGS 398
F + L + Y S E+ LA LT TQV WF+N R + + A+ + G
Sbjct: 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGY 73
Score = 28.9 bits (64), Expect = 0.21
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWF 192
F + L + Y S E+ LA LT TQV WF
Sbjct: 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWF 57
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 41.9 bits (98), Expect = 5e-06
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 334 GEETSYCFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAA 392
G E + E +L + N +P P +A GLT Q WFK R R +
Sbjct: 1 GSEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60
Query: 393 E 393
E
Sbjct: 61 E 61
Score = 30.3 bits (68), Expect = 0.061
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 144 GEETSYCFKEKSRSVLRDWYTH-NPYPSPREKRELAEATGLTTTQVSNWFS 193
G E + E +L + N +P P +A GLT Q WF
Sbjct: 1 GSEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFK 51
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 39.3 bits (91), Expect = 5e-05
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 341 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395
++ ++L+ ++ + + ++L + TGL ++ WF + R + + K
Sbjct: 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64
Score = 30.5 bits (68), Expect = 0.072
Identities = 7/43 (16%), Positives = 21/43 (48%)
Query: 151 FKEKSRSVLRDWYTHNPYPSPREKRELAEATGLTTTQVSNWFS 193
++ ++L+ ++ + + ++L + TGL ++ WF
Sbjct: 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFG 52
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 62
Score = 26.7 bits (59), Expect = 0.89
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 362 REKR-----ELAEATGLTTTQVSNWFKNRRQRDRAA 392
R E + + + +W + R + D+ A
Sbjct: 8 RRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPA 43
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 29.1 bits (64), Expect = 1.1
Identities = 7/57 (12%), Positives = 20/57 (35%)
Query: 175 RELAEATGLTTTQVSNWFSSANITSSPNTSTSTASISPILPSFGFTQEQVACVCEVL 231
EL + G+ ++ ++ + + + +P +TQ + + E
Sbjct: 379 CELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAF 435
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding
protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 26.3 bits (58), Expect = 1.6
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 364 KRELAEATGLTTTQVSNWFKNRRQRDRAAEQK 395
K E+A + + +S KN+R + +
Sbjct: 28 KGEIARRFNIPPSTLSTILKNKRAILASERKY 59
>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain
{Trypanosoma brucei [TaxId: 5691]}
Length = 92
Score = 26.6 bits (59), Expect = 1.9
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 118 QSSSIIINIIKYRVRRKFPLP 138
S ++++ VRR+ PLP
Sbjct: 72 PSEKLVLSEDGLMVRRRDPLP 92
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 27.6 bits (61), Expect = 2.7
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 13/92 (14%)
Query: 212 PILPSFGFTQEQVACVCEVLQQSGNIERLGRFLWSL-PACEKLHKNESVL-----KAKAM 265
P L T + + + + + R + + + +++ S L K
Sbjct: 4 PKLEDGKVTISFMKELMQWYKDQKKLHR--KCAYQILVQVKEVLSKLSTLVETTLKETEK 61
Query: 266 VAF----HRGNFKDLYRILESHQFSPHNHPKL 293
+ H G F DL I E + +P +
Sbjct: 62 ITVCGDTH-GQFYDLLNIFELNGLPSETNPYI 92
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain
{Bacillus subtilis [TaxId: 1423]}
Length = 68
Score = 25.1 bits (55), Expect = 4.5
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 365 RELAEATGLTTTQVSNWFKNRR 386
ELAE G+ + +S+ +N +
Sbjct: 18 SELAEKAGVAKSYLSSIERNLQ 39
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus
caldolyticus [TaxId: 1394]}
Length = 77
Score = 25.2 bits (55), Expect = 5.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 365 RELAEATGLTTTQVSNWFKNRRQ 387
ELA+ GL T +S + R
Sbjct: 27 EELADLAGLHRTYISEVERGDRN 49
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal
domain {Nitrosomonas europaea [TaxId: 915]}
Length = 67
Score = 24.7 bits (54), Expect = 5.4
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 366 ELAEATGLTTTQVSNWFKNRRQRDRA 391
AEA G++ VS + + R
Sbjct: 19 TAAEALGISRRMVSYYRTAHKIIPRT 44
>d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum,
serotype E [TaxId: 1491]}
Length = 411
Score = 26.7 bits (59), Expect = 5.7
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 96 KSIFDKVVTSYKEVWKSPVKTYQSSSIIINIIKYRVRRKFPL 137
I+ ++ YK++ S + Q S+ ++N K K+ L
Sbjct: 268 NDIYTNLLADYKKI-ASKLSKVQVSNPLLNPYKDVFEAKYGL 308
>d1c5aa_ a.50.1.1 (A:) C5a anaphylotoxin {Pig (Sus scrofa
domestica) [TaxId: 9823]}
Length = 66
Score = 24.4 bits (53), Expect = 7.2
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 32 YRVPHDDRCCASELKSNQDRTCQQ 55
Y+ +CC N D TC++
Sbjct: 13 YKYAMLKKCCYDGAYRNDDETCEE 36
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor
superfamily member 4, OX40L receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 54
Score = 24.0 bits (52), Expect = 8.3
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 11/40 (27%)
Query: 26 NCHCRMYRVPHDDRCC---------ASELKSNQDRTCQQC 56
+C Y P +DRCC S +Q+ C+ C
Sbjct: 2 HCVGDTY--PSNDRCCHECRPGNGMVSRCSRSQNTVCRPC 39
>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline
oxidase) {Streptomyces sp. [TaxId: 1931]}
Length = 290
Score = 25.7 bits (56), Expect = 9.6
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 270 RGNFKDLYRILESHQFSPHNHPKLQALWLKAHYVEAEKLRGRPLGAVGKYRVRRKF 325
R NF+D+ +L + HP WL +E K G V K R F
Sbjct: 224 RENFRDILFLLSKVHYKYDVHPSETYDWL----IEISKQAGDE-KMVVKAEQIRDF 274
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.130 0.403
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,539,196
Number of extensions: 70313
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 84
Length of query: 414
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,199,356
Effective search space: 390990056
Effective search space used: 390990056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)