BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14874
(1015 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 206/404 (50%), Gaps = 25/404 (6%)
Query: 23 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINS 82
TPL +A GH+ +V +L A +V + + + LH+AA G+ +V LL +KA +N+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 83 KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 142
K++ +T LH AA G+ ++ + L+ ++A ++ T TPLH+AA G ++ LL+
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 143 LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGS 200
AS +G P+HVAA+ VA++ L AHP+ A K+G T H+A +
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHVAVHHNN 191
Query: 201 VGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTA 260
+ +++ L+ S A N TPL +AA+ V R L++ G S E+ G T
Sbjct: 192 LDIVKLLLPRGGSPHSPAWNGY---TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP 248
Query: 261 VHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSD 320
+HLAAQ GH +++ + S +A K G+T LH+ A G L+ H
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-------- 300
Query: 321 PPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACF 380
+ + + G TPLH+A++ GN +V+ LL V+A+T+ GY+PLH A
Sbjct: 301 -----GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA-DVNAKTKL-GYSPLHQAAQ 353
Query: 381 GGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
GH +V LLL A +G T L IA G++ + +VL
Sbjct: 354 QGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 133/403 (33%), Positives = 200/403 (49%), Gaps = 23/403 (5%)
Query: 56 SALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVID 115
+ LH+A+ G+L + LL A N + T LH+AA G+ ++ ++L+ + A V +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-N 74
Query: 116 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
QTPLH AA G + KLLL+ A+ + G P+H+AA+ E L
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 176 AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGG 235
S TK G T H+AA G V V E L++ D + +N +T PL +A
Sbjct: 135 KEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT---PLHVAVHHN 190
Query: 236 HANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM-RSSKALNVYSKKLGVTAL 294
+ ++V++L+ G S G+T +H+AA+ +V + + + N S + GVT L
Sbjct: 191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTPL 249
Query: 295 HVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRL 354
H+AA G A+ V LLS G LG++SG+TPLHL A G+ V +
Sbjct: 250 HLAAQEGHAEMVALLLS-------------KQANGNLGNKSGLTPLHLVAQEGHVPVADV 296
Query: 355 LLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAAT 414
L+ GV VDA T+ GY PLH+A G++ +V LL AD+ + K G + LH AA
Sbjct: 297 LIKH-GVMVDATTRM-GYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQ 353
Query: 415 HGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTL 457
GH +V +LL GA N G + A R G++ + + L
Sbjct: 354 QGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 136/416 (32%), Positives = 205/416 (49%), Gaps = 43/416 (10%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL +A+ GH +V+ L++ GAS N T +H+AA+ GH +V + + +KA
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 345
K T LH AA G + V+ LL + ++P L + +G TPLH+AA
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLEN-----NANP--------NLATTAGHTPLHIAAR 122
Query: 346 SGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNG 405
G+ V LL Q A + G+ PLH+A G V V LLL R A +A KNG
Sbjct: 123 EGHVETVLALLEKEASQ--ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNG 179
Query: 406 KTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVD 465
T LH+A H +L +V++LL +G ++ G +H AA+ V + +LLQ G +
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239
Query: 466 ------VTTNNLAC--GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 517
VT +LA GH +V LLLS+ A+ +K+G T LH+ A GH+ + +VL+
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 518 GQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDIL 577
G ++AT +R+G T LH+A+ G L +FL+ H A ++
Sbjct: 299 KHGVMVDAT-----------------TRMGYTPLHVASHYGNIKLVKFLL-QHQADVNAK 340
Query: 578 TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
T +PLH AA+ G + LLL GAS + G P+ +A + + V +
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 136/478 (28%), Positives = 216/478 (45%), Gaps = 97/478 (20%)
Query: 123 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 182
TPLH+A+ G L + K LL GAS + ++ + + P+H+AA+ EVA+ L+ + + V
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVN 74
Query: 183 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 242
A KD + TPL AA GH N+V++
Sbjct: 75 AKAKD------------------------------------DQTPLHCAARIGHTNMVKL 98
Query: 243 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ 302
L++ A+ G T +H+AA+ GH + + + +A K G T LHVAA +G+
Sbjct: 99 LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158
Query: 303 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ 362
LL + P A ++G+TPLH+A + N ++V+LLL G
Sbjct: 159 VRVAELLLE------RDAHPNAAG-------KNGLTPLHVAVHHNNLDIVKLLLPRGGS- 204
Query: 363 VDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVE 422
NGY PLH+A V V LL + G T LH+AA GH +MV
Sbjct: 205 -PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVA 262
Query: 423 VLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLL 482
+LL + A N +K G +H A+ GHV + + L++ G VD TT
Sbjct: 263 LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT-------------- 308
Query: 483 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINS 542
+ G T LH+A+ +G++++V+ LL H+A +N+
Sbjct: 309 ------------RMGYTPLHVASHYGNIKLVKFLL-----------------QHQADVNA 339
Query: 543 KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 600
K+++G + LH AA G+ D+ L+ + A+ ++ + TPL +A G + V +L
Sbjct: 340 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV-SSDGTTPLAIAKRLGYISVTDVL 396
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/338 (31%), Positives = 163/338 (48%), Gaps = 22/338 (6%)
Query: 8 TEISKAL-------NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHL 60
TE++K L N + TPL A GH +V +L N+A ++ G + LH+
Sbjct: 60 TEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 119
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV----HDHAAVIDI 116
AA G+++ ALL +A ++ G T LH+AA G + L+ H +AA +
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179
Query: 117 LTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 176
L TPLH+A L + KLLL G S + G P+H+AA+ N EVA+ L+
Sbjct: 180 L-----TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234
Query: 177 HPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGH 236
S A + G T H+AA +G ++ L+ +G + ++ + TPL L A+ GH
Sbjct: 235 GGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGL---TPLHLVAQEGH 290
Query: 237 ANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHV 296
V VL+K G + G+T +H+A+ G+ ++++ + +A KLG + LH
Sbjct: 291 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ 350
Query: 297 AAYFGQADTVRELLSH--VPGTVKSDPPTGASFLGELG 332
AA G D V LL + P V SD T + LG
Sbjct: 351 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 132/270 (48%), Gaps = 30/270 (11%)
Query: 374 PLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINA 433
PLH+A F GH+ +V LL R A S K +T LH+AA GH ++ + LL A++NA
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKV-ETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 434 TDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTN------NLAC--GHV-TVVGLLLS 484
K +H AAR GH ++ LL+ ++ T ++A GHV TV+ LL
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 485 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKS 544
A+ + K G T LH+AA +G +++ E+LL + A NA K
Sbjct: 136 EASQACMT--KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN--------------- 178
Query: 545 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 604
G T LH+A + D+ + L+ TPLH+AA+ Q++V + LL G
Sbjct: 179 --GLTPLHVAVHHNNLDIVKLLL-PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235
Query: 605 ASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
S +A QG P+H+AAQ E+ + L
Sbjct: 236 GSANAESVQGVTPLHLAAQEGHAEMVALLL 265
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N ++ G TPL +A GH E+V +L+ A ++ ++ G + LHL A+ G++ V D L+
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
H +++ +R+G T LH+A+ G L +FL+ H A ++ T +PLH AA+ G
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL-QHQADVNAKTKLGYSPLHQAAQQGHT 357
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
+ LLL GAS + G P+ +A + + V +
Sbjct: 358 DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 18/148 (12%)
Query: 499 TCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNG 558
T LH+A+ GHL +V+ LL +GA N ++ + T LH+AA G
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-----------------TPLHMAARAG 58
Query: 559 YADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 618
+ ++ ++L+ + A V + QTPLH AA G + KLLL+ A+ + G P+
Sbjct: 59 HTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL 117
Query: 619 HVAAQNNFPEVAQIFLRAHPSLVTATTK 646
H+AA+ E L S T K
Sbjct: 118 HIAAREGHVETVLALLEKEASQACMTKK 145
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N +T +G++PL A +GH ++V +L N A + +G + L +A GY+ V D L
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 89/127 (70%), Gaps = 3/127 (2%)
Query: 335 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRA 394
+G TPLHLAA +G+ VV+LLL AG V+A+ + NG PLHLA GH+ VV LLL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 395 ADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGII 454
AD + + DKNG+T LH+AA +GHL++V++LL GA++NA DK G +H AAR GH+ ++
Sbjct: 59 AD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 455 NTLLQKG 461
LL+ G
Sbjct: 118 KLLLEAG 124
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 91/152 (59%), Gaps = 27/152 (17%)
Query: 370 NGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 429
NG PLHLA GH+ VV LLL AD+ + DKNG+T LH+AA +GHL++V++LL GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 430 EINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADL 489
++NA DK G +H AAR GH+ ++ LL+ G V+
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN------------------------ 95
Query: 490 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
+ DKNG+T LH+AA +GHL++V++LL GA
Sbjct: 96 --AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 87/141 (61%), Gaps = 18/141 (12%)
Query: 496 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAA 555
NG+T LH+AA +GHL++V++LL GA++NA DK GRT LHLAA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-----------------GRTPLHLAA 43
Query: 556 MNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 615
NG+ ++ + L+ + A ++ +TPLHLAA G L+V KLLL+ GA ++A D G+
Sbjct: 44 RNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 102
Query: 616 KPIHVAAQNNFPEVAQIFLRA 636
P+H+AA+N EV ++ L A
Sbjct: 103 TPLHLAARNGHLEVVKLLLEA 123
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G TPL +A GH+E+V +L A V+ D+ GR+ LHLAA +G+L+V LL A +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
N+K + GRT LHLAA NG+ ++ + L+ + A ++ +TPLHLAA G L+V KLL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 141 LDLGA 145
L+ GA
Sbjct: 121 LEAGA 125
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 81/132 (61%), Gaps = 19/132 (14%)
Query: 474 GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDAL 533
GH+ VV LLL AD+ + DKNG+T LH+AA +GHL++V++LL GA++NA DK
Sbjct: 13 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----- 66
Query: 534 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 593
GRT LHLAA NG+ ++ + L+ + A ++ +TPLHLAA G
Sbjct: 67 ------------NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGH 113
Query: 594 LQVCKLLLDLGA 605
L+V KLLL+ GA
Sbjct: 114 LEVVKLLLEAGA 125
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 81/127 (63%), Gaps = 4/127 (3%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
+TPLHLAA G L+V KLLL+ GA ++A D G+ P+H+AA+N EV ++ L A V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
A K+G T H+AA G + V++ L++ ++A+++ TPL LAA GH VV+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDK-NGRTPLHLAARNGHLEVVK 118
Query: 242 VLVKAGA 248
+L++AGA
Sbjct: 119 LLLEAGA 125
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 76/122 (62%), Gaps = 4/122 (3%)
Query: 153 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDR 212
G+ P+H+AA+N EV ++ L A V A K+G T H+AA G + V++ L++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 213 SGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV 272
++A+++ TPL LAA GH VV++L++AGA ++K G T +HLAA+NGH +V
Sbjct: 58 GADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 273 LE 274
++
Sbjct: 117 VK 118
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 61/99 (61%)
Query: 9 EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLK 68
E +N + G TPL +A GH+E+V +L A V+ D+ GR+ LHLAA +G+L+
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 69 VCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV 107
V LL A +N+K + GRT LHLAA NG+ ++ + L+
Sbjct: 83 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 76/134 (56%), Gaps = 13/134 (9%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAA GH VV++L++AGA ++K G T +HLAA+NGH +V++ + + A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 345
K G T LH+AA G + V+ LL GA + ++G TPLHLAA
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLE-----------AGADVNAK--DKNGRTPLHLAAR 110
Query: 346 SGNENVVRLLLNSA 359
+G+ VV+LLL +
Sbjct: 111 NGHLEVVKLLLEAG 124
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 77/140 (55%), Gaps = 15/140 (10%)
Query: 256 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 315
G T +HLAA+NGH +V++ + + A K G T LH+AA G + V+ LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---- 56
Query: 316 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPL 375
GA + ++G TPLHLAA +G+ VV+LLL AG V+A+ + NG PL
Sbjct: 57 -------AGADVNAK--DKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDK-NGRTPL 105
Query: 376 HLACFGGHVTVVGLLLSRAA 395
HLA GH+ VV LLL A
Sbjct: 106 HLAARNGHLEVVKLLLEAGA 125
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 187 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 246
+G T H+AA G + V++ L++ ++A+++ TPL LAA GH VV++L++A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA 57
Query: 247 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV 306
GA ++K G T +HLAA+NGH +V++ + + A K G T LH+AA G + V
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 307 RELLS 311
+ LL
Sbjct: 118 KLLLE 122
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 582 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 641
+TPLHLAA G L+V KLLL+ GA ++A D G+ P+H+AA+N EV ++ L A V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 642 TATTKEKERAKDLIAAGKHCE--GMATEXXXXXXGADSAGRILTATDRRN--IEFLDVLI 697
A K L A H E + E D GR RN +E + +L+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 698 E 698
E
Sbjct: 122 E 122
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 9 EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLK 68
E +N + G TPL +A GH+E+V +L A V+ D+ GR+ LHLAA +G+L+
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115
Query: 69 VCDALLTHKAF 79
V LL A+
Sbjct: 116 VVKLLLEAGAY 126
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 97/174 (55%), Gaps = 29/174 (16%)
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
AA +G ++ VR+L+ + G V+A+ + +GY PLHLA GH+ +V +LL AD+ + D
Sbjct: 9 AARAGQDDEVRILM-ANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGADV-NAKD 65
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGE 462
K+G T LH+AA GHL++VEVLL GA++NA DK G +H AAR GH+ I+ LL+ G
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 463 KVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 516
V+ + DK GKT +A GH + EVL
Sbjct: 126 DVN--------------------------AQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 5/154 (3%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D++G + LHLAA G+L++ + LL A +N+K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAEAGQLQVCKLLLD 142
+ G T LHLAA G+ ++ L+ A D+ K TPLHLAA G L++ ++LL
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLK---AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 143 LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 176
GA ++A D G+ P +A + ++A++ +A
Sbjct: 123 AGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 23/166 (13%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + DK+G T LH+AA GHL++VEVLL GA++NA DK
Sbjct: 12 AGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD--- 67
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAE 590
G T LHLAA G+ ++ L+ A D+ K TPLHLAA
Sbjct: 68 --------------GYTPLHLAAREGHLEIVEVLLK---AGADVNAKDKDGYTPLHLAAR 110
Query: 591 AGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 636
G L++ ++LL GA ++A D G+ P +A + ++A++ +A
Sbjct: 111 EGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 84/178 (47%), Gaps = 43/178 (24%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L AA G V +L+ GA++NA DK G +H AAR GH+ I+ LL+ G V
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+ + DK+G T LH+AA GHL++VEVLL GA++N
Sbjct: 62 N--------------------------AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 525 ATDK----------------VCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
A DK + + LL A +N++ + G+T LA G+ D+ L
Sbjct: 96 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + V A KDG T H+AA +G + ++E L+K
Sbjct: 1 DLGKKLLEAARAGQDDEVR--ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA- 57
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
++A+++ TPL LAA GH +V VL+KAGA ++K G+T +HLAA+ GH +
Sbjct: 58 -GADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLE 115
Query: 272 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 304
++E + + A K G T +A G D
Sbjct: 116 IVEVLLKAGADVNAQDKFGKTPFDLAIREGHED 148
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 80/160 (50%), Gaps = 15/160 (9%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA ++K G+T +HLAA+ GH +++E + + A K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
T LH+AA G + V LL GA + + G TPLHLAA G+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLK-----------AGADVNAK--DKDGYTPLHLAAREGHLE 115
Query: 351 VVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLL 390
+V +LL AG V+AQ + G P LA GH + +L
Sbjct: 116 IVEVLL-KAGADVNAQDK-FGKTPFDLAIREGHEDIAEVL 153
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAA GH +V VL+KAGA ++K G+T +HLAA+ GH +++E + + A
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 96
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 345
K G T LH+AA G + V LL GA + + G TP LA
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLLK-----------AGADVNAQ--DKFGKTPFDLAIR 143
Query: 346 SGNENVVRLLLNSA 359
G+E++ +L +A
Sbjct: 144 EGHEDIAEVLQKAA 157
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 613
AA G D R L+ + A ++ TPLHLAA G L++ ++LL GA ++A D
Sbjct: 9 AARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 614 GQKPIHVAAQNNFPEVAQIFLRA 636
G P+H+AA+ E+ ++ L+A
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKA 90
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 102/185 (55%), Gaps = 30/185 (16%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L AA +G ++ VR+L+ + G V+A+ + +GY PLHLA GH+ +V +LL
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILM-ANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AD+ + DK+G T LH+AA GHL++VEVLL GA++NA DK G +H AAR GH+
Sbjct: 68 KAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 126
Query: 452 GIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 511
I+ LL+ G V + DK GKT I+ +G+
Sbjct: 127 EIVEVLLKAGADV--------------------------NAQDKFGKTAFDISIDNGNED 160
Query: 512 MVEVL 516
+ E+L
Sbjct: 161 LAEIL 165
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 84/178 (47%), Gaps = 43/178 (24%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L AA G V +L+ GA++NA DK G +H AAR GH+ I+ LL+ G V
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+ DK+G T LH+AA GHL++VEVLL GA++N
Sbjct: 74 --------------------------NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 525 ATDK----------------VCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
A DK + + LL A +N++ + G+TA ++ NG DL L
Sbjct: 108 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 5/151 (3%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D++G + LHLAA G+L++ + LL A +N+K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAEAGQLQVCKLLLD 142
+ G T LHLAA G+ ++ L+ A D+ K TPLHLAA G L++ ++LL
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLK---AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 143 LGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
GA ++A D G+ ++ N ++A+I
Sbjct: 135 AGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 23/163 (14%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + DK+G T LH+AA GHL++VEVLL GA++NA DK
Sbjct: 24 AGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD--- 79
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAE 590
G T LHLAA G+ ++ L+ A D+ K TPLHLAA
Sbjct: 80 --------------GYTPLHLAAREGHLEIVEVLLK---AGADVNAKDKDGYTPLHLAAR 122
Query: 591 AGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
G L++ ++LL GA ++A D G+ ++ N ++A+I
Sbjct: 123 EGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 87/191 (45%), Gaps = 39/191 (20%)
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
S +G+ L AA G D R L+ + A ++ TPLHLAA G L++ ++LL
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 203
GA ++A D G P+H+AA+ E+ ++ L+A V A KDG T H+AA +G
Sbjct: 70 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREG---- 124
Query: 204 IEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHL 263
H +V VL+KAGA ++K G TA +
Sbjct: 125 --------------------------------HLEIVEVLLKAGADVNAQDKFGKTAFDI 152
Query: 264 AAQNGHNQVLE 274
+ NG+ + E
Sbjct: 153 SIDNGNEDLAE 163
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N + G+TPL +A GH+E+V +L A V+ D++G + LHLAA G+L++ + L
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L A +N++ + G+TA ++ NG DL L
Sbjct: 133 LKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA ++K G+T +HLAA+ GH +++E + + A K G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
T LH+AA G + V LL GA + + G TPLHLAA G+
Sbjct: 81 YTPLHLAAREGHLEIVEVLLK-----------AGADVNAK--DKDGYTPLHLAAREGHLE 127
Query: 351 VVRLLLNSAGVQVDAQTQ 368
+V +LL AG V+AQ +
Sbjct: 128 IVEVLL-KAGADVNAQDK 144
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAA GH +V VL+KAGA ++K G+T +HLAA+ GH +++E + + A
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 108
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 345
K G T LH+AA G + V LL GA + + G T ++
Sbjct: 109 KDKDGYTPLHLAAREGHLEIVEVLLK-----------AGADVNAQ--DKFGKTAFDISID 155
Query: 346 SGNENVVRLL 355
+GNE++ +L
Sbjct: 156 NGNEDLAEIL 165
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 544 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 603
S +G+ L AA G D R L+ + A ++ TPLHLAA G L++ ++LL
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 604 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKE 647
GA ++A D G P+H+AA+ E+ ++ L+A V A K+
Sbjct: 70 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKD 112
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 97/174 (55%), Gaps = 29/174 (16%)
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
AA +G ++ VR+L+ + G V+A+ + +GY PLHLA GH+ +V +LL AD+ + D
Sbjct: 9 AARAGQDDEVRILM-ANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGADV-NAKD 65
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGE 462
K+G T LH+AA GHL++VEVLL GA++NA DK G +H AAR GH+ I+ LL+ G
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 463 KVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 516
V + DK GKT +A +G+ + EVL
Sbjct: 126 DV--------------------------NAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 5/154 (3%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D++G + LHLAA G+L++ + LL A +N+K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAEAGQLQVCKLLLD 142
+ G T LHLAA G+ ++ L+ A D+ K TPLHLAA G L++ ++LL
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLK---AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 143 LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 176
GA ++A D G+ P +A N ++A++ +A
Sbjct: 123 AGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 23/166 (13%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + DK+G T LH+AA GHL++VEVLL GA++NA DK
Sbjct: 12 AGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD--- 67
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAE 590
G T LHLAA G+ ++ L+ A D+ K TPLHLAA
Sbjct: 68 --------------GYTPLHLAAREGHLEIVEVLLK---AGADVNAKDKDGYTPLHLAAR 110
Query: 591 AGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 636
G L++ ++LL GA ++A D G+ P +A N ++A++ +A
Sbjct: 111 EGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 83/178 (46%), Gaps = 43/178 (24%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L AA G V +L+ GA++NA DK G +H AAR GH+ I+ LL+ G V
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+ DK+G T LH+AA GHL++VEVLL GA++N
Sbjct: 62 --------------------------NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 525 ATDK----------------VCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
A DK + + LL A +N++ + G+T LA NG D+ L
Sbjct: 96 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + V A KDG T H+AA +G + ++E L+K
Sbjct: 1 DLGKKLLEAARAGQDDEVR--ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA- 57
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
++A+++ TPL LAA GH +V VL+KAGA ++K G+T +HLAA+ GH +
Sbjct: 58 -GADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLE 115
Query: 272 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 304
++E + + A K G T +A G D
Sbjct: 116 IVEVLLKAGADVNAQDKFGKTPFDLAIDNGNED 148
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAA GH +V VL+KAGA ++K G+T +HLAA+ GH +++E + + A
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 96
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 345
K G T LH+AA G + V LL GA + + G TP LA
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLLK-----------AGADVNAQ--DKFGKTPFDLAID 143
Query: 346 SGNENVVRLLLNSA 359
+GNE++ +L +A
Sbjct: 144 NGNEDIAEVLQKAA 157
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 15/160 (9%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA ++K G+T +HLAA+ GH +++E + + A K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
T LH+AA G + V LL GA + + G TPLHLAA G+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLK-----------AGADVNAK--DKDGYTPLHLAAREGHLE 115
Query: 351 VVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLL 390
+V +LL AG V+AQ + G P LA G+ + +L
Sbjct: 116 IVEVLL-KAGADVNAQDK-FGKTPFDLAIDNGNEDIAEVL 153
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 613
AA G D R L+ + A ++ TPLHLAA G L++ ++LL GA ++A D
Sbjct: 9 AARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 614 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKE 647
G P+H+AA+ E+ ++ L+A V A K+
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKD 100
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 100/179 (55%), Gaps = 29/179 (16%)
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
AA +GN++ V+ LL + G V+A + +G PLHLA GH VV LLLS+ AD + D
Sbjct: 11 AAENGNKDRVKDLLEN-GADVNA-SDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKD 67
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGE 462
+GKT LH+AA +GH ++V++LL QGA+ NA D G +H AA
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN-------------- 113
Query: 463 KVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
GH VV LLLS+ AD ++D +G+T L +A HG+ ++V++L QG
Sbjct: 114 -----------GHKEVVKLLLSQGAD-PNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
L+ A G+ + V +L N A V+ D +G++ LHLAAE+G+ +V LL+ A N+K
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
G+T LHLAA NG+ ++ + L+ A + +TPLHLAAE G +V KLLL G
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLS-QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 126
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A + +D G+ P+ +A ++ EV ++ +
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 93/165 (56%), Gaps = 16/165 (9%)
Query: 297 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 356
AA G D V++LL + SD G TPLHLAA +G++ VV+LLL
Sbjct: 11 AAENGNKDRVKDLLENGADVNASD-------------SDGKTPLHLAAENGHKEVVKLLL 57
Query: 357 NSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHG 416
S G +A+ + G PLHLA GH VV LLLS+ AD + D +GKT LH+AA +G
Sbjct: 58 -SQGADPNAKDSD-GKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENG 114
Query: 417 HLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
H ++V++LL QGA+ N +D G + A +G+ ++ L ++G
Sbjct: 115 HKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 19/162 (11%)
Query: 474 GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDAL 533
G+ V LL AD+ ++D +GKT LH+AA +GH ++V++LL QGA+ NA D
Sbjct: 15 GNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD------ 67
Query: 534 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 593
G+T LHLAA NG+ ++ + L+ A + +TPLHLAAE G
Sbjct: 68 -----------SDGKTPLHLAAENGHKEVVKLLLS-QGADPNAKDSDGKTPLHLAAENGH 115
Query: 594 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
+V KLLL GA + +D G+ P+ +A ++ EV ++ +
Sbjct: 116 KEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 93/166 (56%), Gaps = 16/166 (9%)
Query: 264 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 323
AA+NG+ ++++ + A S G T LH+AA G + V+ LLS +DP
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ-----GADPNA 65
Query: 324 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGH 383
S G TPLHLAA +G++ VV+LLL S G +A+ + G PLHLA GH
Sbjct: 66 KDS--------DGKTPLHLAAENGHKEVVKLLL-SQGADPNAKDSD-GKTPLHLAAENGH 115
Query: 384 VTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 429
VV LLLS+ AD ++D +G+T L +A HG+ ++V++L QG
Sbjct: 116 KEVVKLLLSQGAD-PNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N S G TPL +A GH E+V +L+ A + D +G++ LHLAAE+G+ +V L
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L+ A N+K G+T LHLAA NG+ ++ + L+ A + +TPL LA E G
Sbjct: 90 LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS-QGADPNTSDSDGRTPLDLAREHGN 148
Query: 134 LQVCKLL 140
+V KLL
Sbjct: 149 EEVVKLL 155
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 9/157 (5%)
Query: 94 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 153
AA NG D + L+ ++ A ++ +TPLHLAAE G +V KLLL GA +A D
Sbjct: 11 AAENGNKDRVKDLL-ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 154 GQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
G+ P+H+AA+N EV ++ L A P+ A DG T H+AA G V++ L+
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPN---AKDSDGKTPLHLAAENGHKEVVKLLL--- 123
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 248
G + TPL LA E G+ VV++L K G
Sbjct: 124 SQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 26/163 (15%)
Query: 412 AATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNN- 470
AA +G+ V+ LL GA++NA+D G +H AA GH ++ LL +G + ++
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 471 -----LAC--GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEI 523
LA GH VV LLLS+ AD + D +GKT LH+AA +GH ++V++LL QGA+
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129
Query: 524 NATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
N +D GRT L LA +G ++ + L
Sbjct: 130 NTSD-----------------SDGRTPLDLAREHGNEEVVKLL 155
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 71/135 (52%), Gaps = 13/135 (9%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAAE GH VV++L+ GA ++ G T +HLAA+NGH +V++ + S A
Sbjct: 39 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA 98
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 345
G T LH+AA G + V+ LLS +DP T S G TPL LA
Sbjct: 99 KDSDGKTPLHLAAENGHKEVVKLLLSQ-----GADPNTSDS--------DGRTPLDLARE 145
Query: 346 SGNENVVRLLLNSAG 360
GNE VV+LL G
Sbjct: 146 HGNEEVVKLLEKQGG 160
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 519 QGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILT 578
+ AE D+V D LL + A +N+ G+T LHLAA NG+ ++ + L+ A +
Sbjct: 10 EAAENGNKDRVKD-LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLS-QGADPNAKD 67
Query: 579 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
+TPLHLAAE G +V KLLL GA +A D G+ P+H+AA+N EV ++ L
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 123
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 5/154 (3%)
Query: 154 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 213
G++ I A N V + + V A+ DG T H+AA G V++ L+
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENG--ADVNASDSDGKTPLHLAAENGHKEVVKLLL---SQ 59
Query: 214 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL 273
G TPL LAAE GH VV++L+ GA ++ G T +HLAA+NGH +V+
Sbjct: 60 GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVV 119
Query: 274 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVR 307
+ + S A S G T L +A G + V+
Sbjct: 120 KLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVK 153
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 100/185 (54%), Gaps = 30/185 (16%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L AA +G ++ VR+L+ + G V+A T +GY PLHLA GH+ +V +LL
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILM-ANGADVNA-TDNDGYTPLHLAASNGHLEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AD + ++D G T LH+AA GHL++VEVLL GA++NA D G +H AA+YGH+
Sbjct: 68 KNGAD-VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHL 126
Query: 452 GIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 511
I+ LL+ G V + DK GKT I+ +G+
Sbjct: 127 EIVEVLLKHGADV--------------------------NAQDKFGKTAFDISIDNGNED 160
Query: 512 MVEVL 516
+ E+L
Sbjct: 161 LAEIL 165
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 44/189 (23%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + D +G T LH+AA++GHL++VEVLL GA++NA+D
Sbjct: 21 AARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AA A GH+ +V +LL AD+ + D +G
Sbjct: 80 GITPLHLAA-------------------------ATGHLEIVEVLLKHGADV-NAYDNDG 113
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
T LH+AA +GHL++VEVLL GA++NA DK G+TA ++ N
Sbjct: 114 HTPLHLAAKYGHLEIVEVLLKHGADVNAQDK-----------------FGKTAFDISIDN 156
Query: 558 GYADLCRFL 566
G DL L
Sbjct: 157 GNEDLAEIL 165
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 1/149 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D +G + LHLAA +G+L++ + LL + A +N+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
G T LHLAA G+ ++ L+ H A ++ TPLHLAA+ G L++ ++LL G
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLK-HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
A ++A D G+ ++ N ++A+I
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 19/161 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + D +G T LH+AA++GHL++VEVLL GA++NA+D
Sbjct: 24 AGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD----- 77
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
LT G T LHLAA G+ ++ L+ H A ++ TPLHLAA+ G
Sbjct: 78 -LT-----------GITPLHLAAATGHLEIVEVLLK-HGADVNAYDNDGHTPLHLAAKYG 124
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
L++ ++LL GA ++A D G+ ++ N ++A+I
Sbjct: 125 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 18/154 (11%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++ATD+ G P+H+AA N E+ ++ L+ + + V A+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDLT 79
Query: 188 GNTCAHIAAMQGSVGVIEELMK-------FDRSGVISARNRVTEATPLQLAAEGGHANVV 240
G T H+AA G + ++E L+K +D G TPL LAA+ GH +V
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDG----------HTPLHLAAKYGHLEIV 129
Query: 241 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 274
VL+K GA ++K G TA ++ NG+ + E
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 58/93 (62%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N G TPL +A GH+E+V +L + A V+ +D +G + LHLAA++G+L++ + L
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L H A +N++ + G+TA ++ NG DL L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 20/158 (12%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NATD G T LHLAA
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNATD-----------------NDGYTPLHLAAS 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
NG+ ++ L+ + A ++ L TPLHLAA G L++ ++LL GA ++A D+ G
Sbjct: 57 NGHLEIVEVLLKN-GADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHT 115
Query: 617 PIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
P+H+AA+ E+ ++ L+ H + V A K + A D+
Sbjct: 116 PLHLAAKYGHLEIVEVLLK-HGADVNAQDKFGKTAFDI 152
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 73 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 132
L+ + A +N+ G T LHLAA NG+ ++ L+ + A ++ L TPLHLAA G
Sbjct: 33 LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKN-GADVNASDLTGITPLHLAAATG 91
Query: 133 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 192
L++ ++LL GA ++A D+ G P+H+AA+ E+ ++ L+ H + V A K G T
Sbjct: 92 HLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK-HGADVNAQDKFGKTAF 150
Query: 193 HIAAMQGSVGVIE 205
I+ G+ + E
Sbjct: 151 DISIDNGNEDLAE 163
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N + G+TPL +A + GH+E+V +L N A V+ D G + LHLAA G+L++ + L
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L H A +N+ G T LHLAA G+ ++ L+ H A ++ +T ++ + G
Sbjct: 100 LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGN 158
Query: 134 LQVCKLL 140
+ ++L
Sbjct: 159 EDLAEIL 165
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 5/153 (3%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + V AT DG T H+AA G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLK-- 68
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
+G + +T TPL LAA GH +V VL+K GA + G T +HLAA+ GH +
Sbjct: 69 -NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLE 127
Query: 272 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 304
++E + A K G TA ++ G D
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA + G+T +HLAA NGH +++E + + A S G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
+T LH+AA G + V LL H D G TPLHLAA G+
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYD-------------NDGHTPLHLAAKYGHLE 127
Query: 351 VVRLLLNSAGVQVDAQTQ 368
+V +LL G V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 30/185 (16%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L AA +G ++ VR+L+ + G V+A+ ++G PLHLA GH+ +V +LL
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILM-ANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AD + +ADK G T LH+AA +GHL++VEVLL GA++NATD G +H AA GH+
Sbjct: 68 KHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHL 126
Query: 452 GIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 511
I+ LL+ G V + DK GKT I+ +G+
Sbjct: 127 EIVEVLLKYGADV--------------------------NAQDKFGKTAFDISIDNGNED 160
Query: 512 MVEVL 516
+ E+L
Sbjct: 161 LAEIL 165
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G++ LHLAA G+L++ + LL H A +N+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
++G T LHLAA+ G+ ++ L+ + A ++ TPLHLAA+AG L++ ++LL G
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 19/163 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + D +GKT LH+AA GHL++VEVLL GA++NA DK
Sbjct: 24 AGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADK---- 78
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
+G T LHLAA+ G+ ++ L+ + A ++ TPLHLAA+AG
Sbjct: 79 -------------MGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAG 124
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
L++ ++LL GA ++A D G+ ++ N ++A+I +
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++A DD G+ P+H+AA E+ ++ L+ H + V A K
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK-HGADVNAADKM 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G+T H+AA+ G + ++E L+K +G TPL LAA+ GH +V VL+K G
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLK---NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 2/139 (1%)
Query: 73 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 132
L+ + A +N++ G+T LHLAA+ G+ ++ L+ H A ++ TPLHLAA G
Sbjct: 33 LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK-HGADVNAADKMGDTPLHLAALYG 91
Query: 133 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 192
L++ ++LL GA ++ATD G P+H+AA E+ ++ L+ + + V A K G T
Sbjct: 92 HLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK-YGADVNAQDKFGKTAF 150
Query: 193 HIAAMQGSVGVIEELMKFD 211
I+ G+ + E L K +
Sbjct: 151 DISIDNGNEDLAEILQKLN 169
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NA D G+T LHLAA+
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAEDDS-----------------GKTPLHLAAI 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
G+ ++ L+ H A ++ TPLHLAA G L++ ++LL GA ++ATD G
Sbjct: 57 KGHLEIVEVLLK-HGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFT 115
Query: 617 PIHVAAQNNFPEVAQIFLR 635
P+H+AA E+ ++ L+
Sbjct: 116 PLHLAADAGHLEIVEVLLK 134
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N +G TPL +A GH+E+V +L N A V+ D G + LHLAA+ G+L++ + L
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L + A +N++ + G+TA ++ NG DL L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
G T LH+AA G + V LL H +D + G TPLHLAA G+
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGADVNAAD-------------KMGDTPLHLAALYGHL 93
Query: 350 NVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
+V +LL + G V+A T G+ PLHLA GH+ +V +LL AD + + DK GKT
Sbjct: 94 EIVEVLLKN-GADVNA-TDTYGFTPLHLAADAGHLEIVEVLLKYGAD-VNAQDKFGKTAF 150
Query: 410 HIAATHGHLQMVEVL 424
I+ +G+ + E+L
Sbjct: 151 DISIDNGNEDLAEIL 165
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA E+ +G T +HLAA GH +++E + A + K+G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
T LH+AA +G + V LL + +D G TPLHLAA +G+
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDT-------------YGFTPLHLAADAGHLE 127
Query: 351 VVRLLLNSAGVQVDAQTQ 368
+V +LL G V+AQ +
Sbjct: 128 IVEVLL-KYGADVNAQDK 144
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAA GH +V VL+K GA +K G T +HLAA GH +++E + + A
Sbjct: 49 TPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNA 108
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 345
+ G T LH+AA G + V LL + D + G T ++
Sbjct: 109 TDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQD-------------KFGKTAFDISID 155
Query: 346 SGNENVVRLL 355
+GNE++ +L
Sbjct: 156 NGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 18/185 (9%)
Query: 276 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 335
MR S + + LG L AA GQ D VR L+++ +D +
Sbjct: 1 MRGSHHHHHHGSDLGRKLLE-AARAGQDDEVRILMANGADVNAAD-------------NT 46
Query: 336 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA 395
G TPLHLAAYSG+ +V +LL G VDA + GY PLHLA + GH+ +V +LL A
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKH-GADVDA-SDVFGYTPLHLAAYWGHLEIVEVLLKNGA 104
Query: 396 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIIN 455
D + + D +G T LH+AA G+L++VEVLL GA++NA DK G + + G+ +
Sbjct: 105 D-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA- 162
Query: 456 TLLQK 460
+LQK
Sbjct: 163 EILQK 167
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 94/189 (49%), Gaps = 44/189 (23%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ +AD G T LH+AA GHL++VEVLL GA+++A+D
Sbjct: 21 AARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AA +GH+ I+ LL+ G V+ + D +G
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVN--------------------------AMDSDG 113
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
T LH+AA G+L++VEVLL GA++NA DK G+TA ++ N
Sbjct: 114 MTPLHLAAKWGYLEIVEVLLKHGADVNAQDK-----------------FGKTAFDISIDN 156
Query: 558 GYADLCRFL 566
G DL L
Sbjct: 157 GNEDLAEIL 165
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHLAA G+L++ + LL H A +++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
G T LHLAA G+ ++ L+ + A ++ + TPLHLAA+ G L++ ++LL G
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG 136
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 19/163 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ +AD G T LH+AA GHL++VEVLL GA+++A+D
Sbjct: 24 AGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD----- 77
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
G T LHLAA G+ ++ L+ + A ++ + TPLHLAA+ G
Sbjct: 78 ------------VFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWG 124
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
L++ ++LL GA ++A D G+ ++ N ++A+I +
Sbjct: 125 YLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 3/158 (1%)
Query: 54 GRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV 113
GR L AA G L+ + A +N+ G T LHLAA +G+ ++ L+ H A
Sbjct: 15 GRKLLE-AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLK-HGAD 72
Query: 114 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
+D + TPLHLAA G L++ ++LL GA ++A D G P+H+AA+ + E+ ++
Sbjct: 73 VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 174 LRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
L+ H + V A K G T I+ G+ + E L K +
Sbjct: 133 LK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 20 IGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAF 79
G+TPL +A GH+E+V +L N A V+ D +G + LHLAA+ GYL++ + LL H A
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFL 106
+N++ + G+TA ++ NG DL L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 19/151 (12%)
Query: 504 AATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLC 563
AA G V +L+ GA++NA D G T LHLAA +G+ ++
Sbjct: 21 AARAGQDDEVRILMANGADVNAAD-----------------NTGTTPLHLAAYSGHLEIV 63
Query: 564 RFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQ 623
L+ H A +D + TPLHLAA G L++ ++LL GA ++A D G P+H+AA+
Sbjct: 64 EVLLK-HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAK 122
Query: 624 NNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
+ E+ ++ L+ H + V A K + A D+
Sbjct: 123 WGYLEIVEVLLK-HGADVNAQDKFGKTAFDI 152
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N + G TPL +A GH+E+V +L + A VD D G + LHLAA G+L++ + L
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVL 99
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L + A +N+ G T LHLAA GY ++ L+ H A ++ +T ++ + G
Sbjct: 100 LKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGN 158
Query: 134 LQVCKLL 140
+ ++L
Sbjct: 159 EDLAEIL 165
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA + TG T +HLAA +GH +++E + A S G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
T LH+AAY+G + V LL + D GMTPLHLAA G
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDS-------------DGMTPLHLAAKWGYLE 127
Query: 351 VVRLLLNSAGVQVDAQTQ 368
+V +LL G V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 223 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 282
T TPL LAA GH +V VL+K GA + G+T +HLAA GH +++E + + A
Sbjct: 46 TGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Query: 283 NVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 342
G+T LH+AA +G + V LL H D + G T +
Sbjct: 106 VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQD-------------KFGKTAFDI 152
Query: 343 AAYSGNENVVRLL 355
+ +GNE++ +L
Sbjct: 153 SIDNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 94/189 (49%), Gaps = 44/189 (23%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ +AD G T LH+AA GHL++VEVLL GA++NA D
Sbjct: 21 AARAGRDDEVRILMANGADV-NAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G+ +H AA +GH+ I+ LL+ G V+ + D NG
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVN--------------------------AKDDNG 113
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
T LH+AA GHL++VEVLL GA++NA DK G+TA ++ N
Sbjct: 114 ITPLHLAANRGHLEIVEVLLKYGADVNAQDK-----------------FGKTAFDISINN 156
Query: 558 GYADLCRFL 566
G DL L
Sbjct: 157 GNEDLAEIL 165
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 30/185 (16%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L AA +G ++ VR+L+ + G V+A G+ PLHLA + GH+ +V +LL
Sbjct: 11 GSDLGKKLLE-AARAGRDDEVRILM-ANGADVNAADVV-GWTPLHLAAYWGHLEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AD + + D G T LH+AA GHL++VEVLL GA++NA D G +H AA GH+
Sbjct: 68 KNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHL 126
Query: 452 GIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 511
I+ LL+ G V+ + DK GKT I+ +G+
Sbjct: 127 EIVEVLLKYGADVN--------------------------AQDKFGKTAFDISINNGNED 160
Query: 512 MVEVL 516
+ E+L
Sbjct: 161 LAEIL 165
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 19/163 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ +AD G T LH+AA GHL++VEVLL GA++NA D +
Sbjct: 24 AGRDDEVRILMANGADV-NAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL--- 79
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
G T LHLAA G+ ++ L+ + A ++ TPLHLAA G
Sbjct: 80 --------------GSTPLHLAAHFGHLEIVEVLLKN-GADVNAKDDNGITPLHLAANRG 124
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
L++ ++LL GA ++A D G+ ++ N ++A+I +
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHLAA G+L++ + LL + A +N+
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
+G T LHLAA G+ ++ L+ + A ++ TPLHLAA G L++ ++LL G
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKN-GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 137 ADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 2/151 (1%)
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 120
AA G L+ + A +N+ VG T LHLAA G+ ++ L+ + A V TL
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL- 79
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
TPLHLAA G L++ ++LL GA ++A DD G P+H+AA E+ ++ L+ + +
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK-YGAD 138
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
V A K G T I+ G+ + E L K +
Sbjct: 139 VNAQDKFGKTAFDISINNGNEDLAEILQKLN 169
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 57/93 (61%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N ++G TPL +A + GH+E+V +L N A V+ D G + LHLAA G+L++ + L
Sbjct: 73 VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L + A +N++ + G+TA ++ NG DL L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 80/158 (50%), Gaps = 20/158 (12%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NA D V G T LHLAA
Sbjct: 15 GKKLLE-AARAGRDDEVRILMANGADVNAADVV-----------------GWTPLHLAAY 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
G+ ++ L+ + A V TL TPLHLAA G L++ ++LL GA ++A DD G
Sbjct: 57 WGHLEIVEVLLKNGADVNAYDTL-GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGIT 115
Query: 617 PIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
P+H+AA E+ ++ L+ + + V A K + A D+
Sbjct: 116 PLHLAANRGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AG+ ++L+ GA ++A D G P+H+AA E+ ++ L+ + + V A
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLK-NGADVNAYDTL 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G+T H+AA G + ++E L+K ++A++ TPL LAA GH +V VL+K G
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLK--NGADVNAKDD-NGITPLHLAANRGHLEIVEVLLKYG 136
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISINNGNEDLAE 163
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM-RSSKALNVYSKKL 289
AA G + VR+L+ GA + G+T +HLAA GH +++E + ++ +N Y L
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT-L 79
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
G T LH+AA+FG + V LL + D ++G+TPLHLAA G+
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKD-------------DNGITPLHLAANRGHL 126
Query: 350 NVVRLLLNSAGVQVDAQTQ 368
+V +LL G V+AQ +
Sbjct: 127 EIVEVLL-KYGADVNAQDK 144
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 5/153 (3%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + V A G T H+AA G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGRDDEVR--ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLK-- 68
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
++A + + +TPL LAA GH +V VL+K GA ++ G T +HLAA GH +
Sbjct: 69 NGADVNAYDTLG-STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLE 127
Query: 272 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 304
++E + A K G TA ++ G D
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
L+ A G+ + V ++ N A V+ D +GR+ LH AAE+G+ +V L++ A +N+K
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
GRT LH AA NG+ ++ + L+ A ++ +TPLH AAE G +V KLL+ G
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++ +D G+ P+ +A ++ EV ++ +
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 101/179 (56%), Gaps = 29/179 (16%)
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
AA +GN++ V+ L+ + G V+A + +G PLH A GH VV LL+S+ AD + + D
Sbjct: 11 AAENGNKDRVKDLIEN-GADVNA-SDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKD 67
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGE 462
+G+T LH AA +GH ++V++L+ +GA++NA D G +H AA G
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG------------- 114
Query: 463 KVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
H VV LL+S+ AD + ++D +G+T L +A HG+ ++V++L QG
Sbjct: 115 ------------HKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 19/162 (11%)
Query: 474 GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDAL 533
G+ V L+ AD+ ++D +G+T LH AA +GH ++V++L+ +GA++NA D
Sbjct: 15 GNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD---- 69
Query: 534 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 593
GRT LH AA NG+ ++ + L+ A ++ +TPLH AAE G
Sbjct: 70 -------------GRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGH 115
Query: 594 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
+V KLL+ GA ++ +D G+ P+ +A ++ EV ++ +
Sbjct: 116 KEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N S G TPL A GH E+V +++ A V+ D +GR+ LH AAE+G+ +V L
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 89
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
++ A +N+K GRT LH AA NG+ ++ + L+ A ++ +TPL LA E G
Sbjct: 90 ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNTSDSDGRTPLDLAREHGN 148
Query: 134 LQVCKLLLDLGA 145
+V KLL G
Sbjct: 149 EEVVKLLEKQGG 160
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 26/163 (15%)
Query: 412 AATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNN- 470
AA +G+ V+ L+ GA++NA+D G +H AA GH ++ L+ KG V+ ++
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 471 -------LACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEI 523
GH VV LL+S+ AD + + D +G+T LH AA +GH ++V++L+ +GA++
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Query: 524 NATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
N +D GRT L LA +G ++ + L
Sbjct: 130 NTSDS-----------------DGRTPLDLAREHGNEEVVKLL 155
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 16/166 (9%)
Query: 264 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 323
AA+NG+ ++++ + A S G T LH AA G + V+ L+S
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-----------K 59
Query: 324 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGH 383
GA + G TPLH AA +G++ VV+LL+ S G V+A+ + G PLH A GH
Sbjct: 60 GADVNAK--DSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSD-GRTPLHHAAENGH 115
Query: 384 VTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 429
VV LL+S+ AD + ++D +G+T L +A HG+ ++V++L QG
Sbjct: 116 KEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 5/155 (3%)
Query: 94 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 153
AA NG D + L+ ++ A ++ +TPLH AAE G +V KLL+ GA ++A D
Sbjct: 11 AAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 154 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 213
G+ P+H AA+N EV ++ + + + V A DG T H AA G V++ L+
Sbjct: 70 GRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS---K 125
Query: 214 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 248
G + TPL LA E G+ VV++L K G
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 519 QGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILT 578
+ AE D+V D L+ + A +N+ GRT LH AA NG+ ++ + L+ A ++
Sbjct: 10 EAAENGNKDRVKD-LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKD 67
Query: 579 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 638
+TPLH AAE G +V KLL+ GA ++A D G+ P+H AA+N EV ++ +
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 639 SLVTATT 645
+ T+ +
Sbjct: 128 DVNTSDS 134
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 69/136 (50%), Gaps = 15/136 (11%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL AAE GH VV++L+ GA ++ G T +H AA+NGH +V++ + SK +V
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK-LLISKGADVN 97
Query: 286 SKKL-GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 344
+K G T LH AA G + V+ L+S SD G TPL LA
Sbjct: 98 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS-------------DGRTPLDLAR 144
Query: 345 YSGNENVVRLLLNSAG 360
GNE VV+LL G
Sbjct: 145 EHGNEEVVKLLEKQGG 160
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 37/180 (20%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AAE G K L++ GA ++A+D G+ P+H AA+N EV ++ + + + V A D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSD 69
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G T PL AAE GH VV++L+ G
Sbjct: 70 GRT------------------------------------PLHHAAENGHKEVVKLLISKG 93
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVR 307
A ++ G T +H AA+NGH +V++ + S A S G T L +A G + V+
Sbjct: 94 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVK 153
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 99/185 (53%), Gaps = 30/185 (16%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L AA +G ++ VR+L+ + G V+A+ +G+ PLHLA F GH+ +V +LL
Sbjct: 11 GSDLGKKLLE-AARAGRDDEVRILM-ANGADVNAEDA-SGWTPLHLAAFNGHLEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AD + + D G T L +AA GHL++VEVLL GA++NA D G +H AA +GH+
Sbjct: 68 KNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126
Query: 452 GIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 511
I+ LL+ G V+ + DK GKT I+ +G+
Sbjct: 127 EIVEVLLKNGADVN--------------------------AQDKFGKTAFDISIDNGNED 160
Query: 512 MVEVL 516
+ E+L
Sbjct: 161 LAEIL 165
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 92/189 (48%), Gaps = 44/189 (23%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + D +G T LH+AA +GHL++VEVLL GA++NA D
Sbjct: 21 AARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G + AA +GH+ I+ LL+ G DV N D G
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNG--ADVNAN------------------------DMEG 113
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
T LH+AA GHL++VEVLL GA++NA DK G+TA ++ N
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDK-----------------FGKTAFDISIDN 156
Query: 558 GYADLCRFL 566
G DL L
Sbjct: 157 GNEDLAEIL 165
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 19/163 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + D +G T LH+AA +GHL++VEVLL GA++NA D
Sbjct: 24 AGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD----- 77
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
G T L LAA+ G+ ++ L+ + A ++ + TPLHLAA G
Sbjct: 78 ------------HAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFG 124
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
L++ ++LL GA ++A D G+ ++ N ++A+I +
Sbjct: 125 HLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHLAA +G+L++ + LL + A +N+
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
G T L LAA+ G+ ++ L+ + A ++ + TPLHLAA G L++ ++LL G
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AG+ ++L+ GA ++A D G P+H+AA N E+ ++ L+ + + V A
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHA 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G T +AA+ G + ++E L+K +G N + TPL LAA GH +V VL+K G
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLK---NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G TPL +A GH+E+V +L N A V+ D EG + LHLAA G+L++ + LL + A +
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFL 106
N++ + G+TA ++ NG DL L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 2/151 (1%)
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 120
AA G L+ + A +N++ G T LHLAA NG+ ++ L+ + A ++ +
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHA 79
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
TPL LAA G L++ ++LL GA ++A D +G P+H+AA E+ ++ L+ + +
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGAD 138
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
V A K G T I+ G+ + E L K +
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 85/194 (43%), Gaps = 49/194 (25%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA E+ +G+T +HL
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHL--------------------------- 53
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
AA+ G + V LL + D +GMTPL LAA G+
Sbjct: 54 ------AAFNGHLEIVEVLLKNGADVNAVD-------------HAGMTPLRLAALFGHLE 94
Query: 351 VVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLH 410
+V +LL + G V+A E G+ PLHLA GH+ +V +LL AD + + DK GKT
Sbjct: 95 IVEVLLKN-GADVNANDME-GHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFD 151
Query: 411 IAATHGHLQMVEVL 424
I+ +G+ + E+L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 19/139 (13%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NA D G T LHLAA
Sbjct: 15 GKKLLE-AARAGRDDEVRILMANGADVNAEDAS-----------------GWTPLHLAAF 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
NG+ ++ L+ + A ++ + TPL LAA G L++ ++LL GA ++A D +G
Sbjct: 57 NGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHT 115
Query: 617 PIHVAAQNNFPEVAQIFLR 635
P+H+AA E+ ++ L+
Sbjct: 116 PLHLAAMFGHLEIVEVLLK 134
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 5/153 (3%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + V A G T H+AA G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGRDDEVR--ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-- 68
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
++A + TPL+LAA GH +V VL+K GA + G T +HLAA GH +
Sbjct: 69 NGADVNAVDHAG-MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE 127
Query: 272 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 304
++E + + A K G TA ++ G D
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAA GH +V VL+K GA + G T + LAA GH +++E + + A
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA 108
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 345
+ G T LH+AA FG + V LL + D + G T ++
Sbjct: 109 NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD-------------KFGKTAFDISID 155
Query: 346 SGNENVVRLL 355
+GNE++ +L
Sbjct: 156 NGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 93/189 (49%), Gaps = 44/189 (23%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + D G T LH+AA GHL++VEVLL GA++NA D
Sbjct: 21 AARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AAR GH+ I+ LL+ G V+ ++D +G
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGADVN--------------------------ASDSHG 113
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
T LH+AA GHL++VEVLL GA++NA DK G+TA ++ N
Sbjct: 114 FTPLHLAAKRGHLEIVEVLLKNGADVNAQDK-----------------FGKTAFDISIDN 156
Query: 558 GYADLCRFL 566
G DL L
Sbjct: 157 GNEDLAEIL 165
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHLAA G+L++ + LL + A +N+K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
+G T LHLAA G+ ++ L+ + A ++ TPLHLAA+ G L++ ++LL G
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKN-GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 19/163 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + D G T LH+AA GHL++VEVLL GA++NA D +
Sbjct: 24 AGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL--- 79
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
G T LHLAA G+ ++ L+ + A ++ TPLHLAA+ G
Sbjct: 80 --------------GVTPLHLAARRGHLEIVEVLLKN-GADVNASDSHGFTPLHLAAKRG 124
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
L++ ++LL GA ++A D G+ ++ N ++A+I +
Sbjct: 125 HLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 59/93 (63%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N + S+G TPL +A RGH+E+V +L N A V+ D G + LHLAA+ G+L++ + L
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L + A +N++ + G+TA ++ NG DL L
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++A D G P+H+AA E+ ++ L+ + + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDSL 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G T H+AA +G + ++E L+K +G + TPL LAA+ GH +V VL+K G
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLK---NGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
G T LH+AA+FG + V LL + D G+TPLHLAA G+
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL-------------GVTPLHLAARRGHL 93
Query: 350 NVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
+V +LL + G V+A + +G+ PLHLA GH+ +V +LL AD + + DK GKT
Sbjct: 94 EIVEVLLKN-GADVNA-SDSHGFTPLHLAAKRGHLEIVEVLLKNGAD-VNAQDKFGKTAF 150
Query: 410 HIAATHGHLQMVEVL 424
I+ +G+ + E+L
Sbjct: 151 DISIDNGNEDLAEIL 165
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA + TG+T +HLAA GH +++E + + A LG
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
VT LH+AA G + V LL + SD G TPLHLAA G+
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDS-------------HGFTPLHLAAKRGHLE 127
Query: 351 VVRLLLNSAGVQVDAQTQ 368
+V +LL + G V+AQ +
Sbjct: 128 IVEVLLKN-GADVNAQDK 144
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 23/141 (16%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NA D G T LHLAA
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNARD-----------------FTGWTPLHLAAH 56
Query: 557 NGYADLCRFLVHDHAAV--IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQG 614
G+ ++ L+ + A V D L + TPLHLAA G L++ ++LL GA ++A+D G
Sbjct: 57 FGHLEIVEVLLKNGADVNAKDSLGV---TPLHLAARRGHLEIVEVLLKNGADVNASDSHG 113
Query: 615 QKPIHVAAQNNFPEVAQIFLR 635
P+H+AA+ E+ ++ L+
Sbjct: 114 FTPLHLAAKRGHLEIVEVLLK 134
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 216 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEE 275
++AR+ T TPL LAA GH +V VL+K GA ++ G T +HLAA+ GH +++E
Sbjct: 40 VNARD-FTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEV 98
Query: 276 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 335
+ + A S G T LH+AA G + V LL + D +
Sbjct: 99 LLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQD-------------KF 145
Query: 336 GMTPLHLAAYSGNENVVRLL 355
G T ++ +GNE++ +L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 96.3 bits (238), Expect = 7e-20, Method: Composition-based stats.
Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 29/179 (16%)
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
AA +GN++ V+ L+ + G V+A + +G PLH A GH +V LL+S+ AD + + D
Sbjct: 11 AAENGNKDRVKDLIEN-GADVNA-SDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKD 67
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGE 462
+G+T LH AA GH ++V++L+ +GA++NA D G +H AA+ GH I+ L+ KG
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 463 KVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
V+ ++D +G+T L +A HG+ ++V++L QG
Sbjct: 128 DVN--------------------------TSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 91.3 bits (225), Expect = 3e-18, Method: Composition-based stats.
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 16/165 (9%)
Query: 297 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 356
AA G D V++L+ + SD G TPLH AA G++ +V+LL+
Sbjct: 11 AAENGNKDRVKDLIENGADVNASD-------------SDGRTPLHYAAKEGHKEIVKLLI 57
Query: 357 NSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHG 416
S G V+A+ +G PLH A GH +V LL+S+ AD + + D +G+T LH AA G
Sbjct: 58 -SKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEG 114
Query: 417 HLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
H ++V++L+ +GA++N +D G + A +G+ I+ L ++G
Sbjct: 115 HKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 89.0 bits (219), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
L+ A G+ + V ++ N A V+ D +GR+ LH AA+ G+ ++ L++ A +N+K
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
GRT LH AA G+ ++ + L+ A ++ +TPLH AA+ G ++ KLL+ G
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
A ++ +D G+ P+ +A ++ E+ ++
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 83/152 (54%), Gaps = 19/152 (12%)
Query: 482 LLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFIN 541
L+ AD+ ++D +G+T LH AA GH ++V++L+ +GA++NA D
Sbjct: 23 LIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD------------ 69
Query: 542 SKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 601
GRT LH AA G+ ++ + L+ A ++ +TPLH AA+ G ++ KLL+
Sbjct: 70 -----GRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Query: 602 DLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
GA ++ +D G+ P+ +A ++ E+ ++
Sbjct: 124 SKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 82.0 bits (201), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 26/163 (15%)
Query: 412 AATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNN- 470
AA +G+ V+ L+ GA++NA+D G +H AA+ GH I+ L+ KG V+ ++
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 471 -------LACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEI 523
GH +V LL+S+ AD + + D +G+T LH AA GH ++V++L+ +GA++
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Query: 524 NATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
N +D GRT L LA +G ++ + L
Sbjct: 130 NTSDS-----------------DGRTPLDLAREHGNEEIVKLL 155
Score = 79.7 bits (195), Expect = 8e-15, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N S G TPL A GH E+V +++ A V+ D +GR+ LH AA+ G+ ++ L
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 89
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
++ A +N+K GRT LH AA G+ ++ + L+ A ++ +TPL LA E G
Sbjct: 90 ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNTSDSDGRTPLDLAREHGN 148
Query: 134 LQVCKLLLDLGASID 148
++ KLL G ++
Sbjct: 149 EEIVKLLEKQGGWLE 163
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 56/166 (33%), Positives = 88/166 (53%), Gaps = 16/166 (9%)
Query: 264 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 323
AA+NG+ ++++ + A S G T LH AA G + V+ L+S D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD--- 67
Query: 324 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGH 383
G TPLH AA G++ +V+LL+ S G V+A+ +G PLH A GH
Sbjct: 68 ----------SDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAK-DSDGRTPLHYAAKEGH 115
Query: 384 VTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 429
+V LL+S+ AD + ++D +G+T L +A HG+ ++V++L QG
Sbjct: 116 KEIVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 73.6 bits (179), Expect = 5e-13, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 5/155 (3%)
Query: 94 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 153
AA NG D + L+ ++ A ++ +TPLH AA+ G ++ KLL+ GA ++A D
Sbjct: 11 AAENGNKDRVKDLI-ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 154 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 213
G+ P+H AA+ E+ ++ + + + V A DG T H AA +G +++ L+
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS---K 125
Query: 214 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 248
G + TPL LA E G+ +V++L K G
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 517 LGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDI 576
L + AE D+V D L+ + A +N+ GRT LH AA G+ ++ + L+ A ++
Sbjct: 8 LIEAAENGNKDRVKD-LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNA 65
Query: 577 LTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
+TPLH AA+ G ++ KLL+ GA ++A D G+ P+H AA+ E+ ++ +
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 15/136 (11%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL AA+ GH +V++L+ GA ++ G T +H AA+ GH ++++ + SK +V
Sbjct: 39 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVK-LLISKGADVN 97
Query: 286 SKKL-GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 344
+K G T LH AA G + V+ L+S SD G TPL LA
Sbjct: 98 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD-------------SDGRTPLDLAR 144
Query: 345 YSGNENVVRLLLNSAG 360
GNE +V+LL G
Sbjct: 145 EHGNEEIVKLLEKQGG 160
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 154 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 213
G++ I A N V + + + V A+ DG T H AA +G +++ L+ +
Sbjct: 5 GKRLIEAAENGNKDRVKDLI--ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLIS--KG 60
Query: 214 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL 273
++A++ TPL AA+ GH +V++L+ GA ++ G T +H AA+ GH +++
Sbjct: 61 ADVNAKDS-DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIV 119
Query: 274 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVREL 309
+ + S A S G T L +A G + V+ L
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 92/189 (48%), Gaps = 44/189 (23%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ ++D G T LH+AA GHL++VEVLL GA++NA D
Sbjct: 21 AARAGQDDEVRILMANGADV-NASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSL 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AA GH+ ++ LL+ G DV N D NG
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNG--ADVNAN------------------------DHNG 113
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
T LH+AA GHL++VEVLL GA++NA DK G+TA ++ N
Sbjct: 114 FTPLHLAANIGHLEIVEVLLKHGADVNAQDK-----------------FGKTAFDISIDN 156
Query: 558 GYADLCRFL 566
G DL L
Sbjct: 157 GNEDLAEIL 165
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 30/185 (16%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L AA +G ++ VR+L+ + G V+A + G+ PLHLA + GH+ +V +LL
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILM-ANGADVNA-SDHVGWTPLHLAAYFGHLEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AD + + D G T LH+AA GHL++VEVLL GA++NA D G +H AA GH+
Sbjct: 68 KNGAD-VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHL 126
Query: 452 GIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 511
I+ LL+ G V + DK GKT I+ +G+
Sbjct: 127 EIVEVLLKHGADV--------------------------NAQDKFGKTAFDISIDNGNED 160
Query: 512 MVEVL 516
+ E+L
Sbjct: 161 LAEIL 165
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N S+G TPL +A +RGH+E+V +L N A V+ D G + LHLAA G+L++ + L
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L H A +N++ + G+TA ++ NG DL L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHLAA G+L++ + LL + A +N+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
+G T LHLAA G+ ++ L+ + A ++ TPLHLAA G L++ ++LL G
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKN-GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG 136
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 19/163 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ ++D G T LH+AA GHL++VEVLL GA++NA D +
Sbjct: 24 AGQDDEVRILMANGADV-NASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSL--- 79
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
G T LHLAA G+ ++ L+ + A ++ TPLHLAA G
Sbjct: 80 --------------GVTPLHLAADRGHLEVVEVLLKN-GADVNANDHNGFTPLHLAANIG 124
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
L++ ++LL GA ++A D G+ ++ N ++A+I +
Sbjct: 125 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++A+D G P+H+AA E+ ++ L+ + + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLK-NGADVNADDSL 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G T H+AA +G + V+E L+K +G N TPL LAA GH +V VL+K G
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLK---NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG 136
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 73 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 132
L+ + A +N+ VG T LHLAA G+ ++ L+ + A V +L TPLHLAA+ G
Sbjct: 33 LMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSL-GVTPLHLAADRG 91
Query: 133 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 192
L+V ++LL GA ++A D G P+H+AA E+ ++ L+ H + V A K G T
Sbjct: 92 HLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK-HGADVNAQDKFGKTAF 150
Query: 193 HIAAMQGSVGVIEELMKFD 211
I+ G+ + E L K +
Sbjct: 151 DISIDNGNEDLAEILQKLN 169
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 20/158 (12%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NA+D VG T LHLAA
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNASD-----------------HVGWTPLHLAAY 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
G+ ++ L+ + A V +L TPLHLAA+ G L+V ++LL GA ++A D G
Sbjct: 57 FGHLEIVEVLLKNGADVNADDSL-GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFT 115
Query: 617 PIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
P+H+AA E+ ++ L+ H + V A K + A D+
Sbjct: 116 PLHLAANIGHLEIVEVLLK-HGADVNAQDKFGKTAFDI 152
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 5/153 (3%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + V A+ G T H+AA G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLK-- 68
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
+G + TPL LAA+ GH VV VL+K GA + GFT +HLAA GH +
Sbjct: 69 -NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLE 127
Query: 272 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 304
++E + A K G TA ++ G D
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA + G+T +HLAA GH +++E + + A LG
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
VT LH+AA G + V LL + +D +G TPLHLAA G+
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNAND-------------HNGFTPLHLAANIGHLE 127
Query: 351 VVRLLLNSAGVQVDAQTQ 368
+V +LL G V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 91/189 (48%), Gaps = 44/189 (23%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + D G T LH+AA GHL++VEVLL GA++NA D
Sbjct: 21 AARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G+ +H AA+ GH+ I+ LL+ G V + D G
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADV--------------------------NADDTIG 113
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
T LH+AA GHL++VEVLL GA++NA DK G+TA ++ N
Sbjct: 114 STPLHLAADTGHLEIVEVLLKYGADVNAQDK-----------------FGKTAFDISIDN 156
Query: 558 GYADLCRFL 566
G DL L
Sbjct: 157 GNEDLAEIL 165
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 92/175 (52%), Gaps = 17/175 (9%)
Query: 276 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 335
MR S + + LG L AA GQ D VR L+++ GA E
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-AARAGQDDEVRILMAN-----------GADVNAE--DTY 46
Query: 336 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA 395
G TPLHLAA G+ +V +LL + G V+A +G PLHLA GH+ +V +LL A
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKN-GADVNA-LDFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 396 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
D + + D G T LH+AA GHL++VEVLL GA++NA DK G + + G+
Sbjct: 105 D-VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHLAA G+L++ + LL + A +N+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
G T LHLAA G+ ++ L+ + A ++ TPLHLAA+ G L++ ++LL G
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLK-YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYG 136
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
A ++A D G+ ++ N ++A+I
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++A D G P+H+AA+ E+ ++ L+ + + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLK-NGADVNALDFS 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G+T H+AA +G + ++E L+K+ G + +TPL LAA+ GH +V VL+K G
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKY---GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYG 136
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 19/161 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + D G T LH+AA GHL++VEVLL GA++NA D
Sbjct: 24 AGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD----- 77
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
G T LHLAA G+ ++ L+ + A ++ TPLHLAA+ G
Sbjct: 78 ------------FSGSTPLHLAAKRGHLEIVEVLLK-YGADVNADDTIGSTPLHLAADTG 124
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
L++ ++LL GA ++A D G+ ++ N ++A+I
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Query: 73 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 132
L+ + A +N++ G T LHLAA G+ ++ L+ + A ++ L TPLHLAA+ G
Sbjct: 33 LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLK-NGADVNALDFSGSTPLHLAAKRG 91
Query: 133 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 192
L++ ++LL GA ++A D G P+H+AA E+ ++ L+ + + V A K G T
Sbjct: 92 HLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK-YGADVNAQDKFGKTAF 150
Query: 193 HIAAMQGSVGVIE 205
I+ G+ + E
Sbjct: 151 DISIDNGNEDLAE 163
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 19/139 (13%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NA D D T LHLAA
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAEDTYGD-----------------TPLHLAAR 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
G+ ++ L+ + A ++ L TPLHLAA+ G L++ ++LL GA ++A D G
Sbjct: 57 VGHLEIVEVLLK-NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGST 115
Query: 617 PIHVAAQNNFPEVAQIFLR 635
P+H+AA E+ ++ L+
Sbjct: 116 PLHLAADTGHLEIVEVLLK 134
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G TPL +A RGH+E+V +L A V+ D G + LHLAA+ G+L++ + LL + A +
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFL 106
N++ + G+TA ++ NG DL L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 5/153 (3%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + V A G+T H+AA G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLK-- 68
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
+G + +TPL LAA+ GH +V VL+K GA ++ G T +HLAA GH +
Sbjct: 69 -NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLE 127
Query: 272 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 304
++E + A K G TA ++ G D
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 65
+N +IG TPL +A + GH+E+V +L A V+ D+ G++A ++ ++G
Sbjct: 106 VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 153/339 (45%), Gaps = 40/339 (11%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSA--LHLAAEHGYLKVCDALLTHKAFINS 82
LL A G+ E + +L V+ +GR + LHLAA + +++ LL H A +++
Sbjct: 28 LLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Query: 83 KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 142
K + G LH A G+ ++ L+ H A ++ + L + TPLH AA +++VC LLL
Sbjct: 87 KDKGGLVPLHNACSYGHYEVTELLL-KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145
Query: 143 LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVG 202
GA + G+ + +A E + H L A D +A ++ ++
Sbjct: 146 HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREAD------LAKVKKTLA 199
Query: 203 VIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN---VVRVLVKAGASCTDENKTGFT 259
+ E++ F + + T L A H V +L++ GA+ ++NK T
Sbjct: 200 L--EIINF--------KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMT 249
Query: 260 AVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKS 319
+H+AA+ HN V+E + A LG TALH AA G T R LLS+ S
Sbjct: 250 PLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY-----GS 304
Query: 320 DPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS 358
DP + S G T AA GNE V ++L S
Sbjct: 305 DP--------SIISLQGFT----AAQMGNEAVQQILSES 331
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 143/368 (38%), Gaps = 93/368 (25%)
Query: 319 SDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLA 378
+DP A GE + + AA SGNE + LL PL++
Sbjct: 11 ADPSAKAVLTGEYKKDELLE----AARSGNEEKLMALLT----------------PLNVN 50
Query: 379 CFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGG 438
C ++D T LH+AA + +++V++LL GA+++A DKGG
Sbjct: 51 C-------------------HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG 91
Query: 439 ARSIHTAARYGHVGIINTLLQKGEKVDVTT--------NNLACGHVTVVGLLLSRAADLL 490
+H A YGH + LL+ G V+ + V V LLLS AD
Sbjct: 92 LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-P 150
Query: 491 QSADKNGKTCLHIAAT-----------HGH-------------------LQMVEVLLGQG 520
+ +GK+ + +A T GH L+++ Q
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210
Query: 521 AEI----------NATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDH 570
E +V + LL A +N K++ T LH+AA + D+ L H H
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL-HKH 269
Query: 571 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 630
A ++ L QT LH AA AG LQ C+LLL G+ QG AAQ V
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG----FTAAQMGNEAVQ 325
Query: 631 QIFLRAHP 638
QI + P
Sbjct: 326 QILSESTP 333
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 111/262 (42%), Gaps = 26/262 (9%)
Query: 224 EATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALN 283
++TPL LAA +V++L++ GA ++K G +H A GH +V E + A
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117
Query: 284 VYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTP---- 339
T LH AA + + LLSH PT + G+ + TP
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSH------GADPTLVNCHGKSAVDMAPTPELRE 171
Query: 340 ----------LHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVT---V 386
L AA + V+ L A ++ + ++ LH A H V
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVKKTL--ALEIINFKQPQSHETALHCAVASLHPKRKQV 229
Query: 387 VGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAA 446
LLL + A++ +K+ T LH+AA H ++EVL GA++NA D G ++H AA
Sbjct: 230 AELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288
Query: 447 RYGHVGIINTLLQKGEKVDVTT 468
GH+ LL G + +
Sbjct: 289 LAGHLQTCRLLLSYGSDPSIIS 310
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 24/213 (11%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G PL AC+ GH E+ +L + A V+ D + LH AA ++VC LL+H A
Sbjct: 91 GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV----------------IDILTLRK--- 121
+ G++A+ +A + + H+ + ++I+ ++
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210
Query: 122 -QTPLHLAAEA---GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 177
+T LH A + + QV +LLL GA+++ + P+HVAA+ +V ++ L H
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEV-LHKH 269
Query: 178 PSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 210
+ + A G T H AA+ G + L+ +
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 128/300 (42%), Gaps = 41/300 (13%)
Query: 120 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 179
+K L A + ++ LL L + A+D + P+H+AA N + Q+ L+ H +
Sbjct: 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGA 82
Query: 180 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 239
V A K G H A G V E L+K ++A + + + TPL AA V
Sbjct: 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMD-LWQFTPLHEAASKNRVEV 139
Query: 240 VRVLVKAGASCTDENKTGFTAVHLAAQ-----------NGHNQV-------LEEMRSSKA 281
+L+ GA T N G +AV +A GH+ + L +++ + A
Sbjct: 140 CSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA 199
Query: 282 LNVYSKKLGV---TALH--VAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESG 336
L + + K TALH VA+ + V ELL V ++
Sbjct: 200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK------------NKDF 247
Query: 337 MTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAAD 396
MTPLH+AA + +V+ +L+ G +++A G LH A GH+ LLLS +D
Sbjct: 248 MTPLHVAAERAHNDVME-VLHKHGAKMNA-LDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 492 SADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTAL 551
++D T LH+AA + +++V++LL GA+++A DK G L
Sbjct: 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG-----------------GLVPL 95
Query: 552 HLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 611
H A G+ ++ L+ H A ++ + L + TPLH AA +++VC LLL GA +
Sbjct: 96 HNACSYGHYEVTELLL-KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154
Query: 612 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIA 656
G+ + +A E + H L A + + K +A
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA 199
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N++ TPL +A R H +++ + + A+++ D G++ALH AA G+L+ C L
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299
Query: 74 LTH 76
L++
Sbjct: 300 LSY 302
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 98/185 (52%), Gaps = 30/185 (16%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L AA +G ++ VR+L+ + G V+A G PLHL GH+ ++ +LL
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILM-ANGADVNANDW-FGITPLHLVVNNGHLEIIEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AAD+ ++DK+G T LH+AA GHL++VEVLL GA++NA D G +H AA GH+
Sbjct: 68 KYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHL 126
Query: 452 GIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 511
I+ LL+ G V+ + DK GKT I+ +G+
Sbjct: 127 EIVEVLLKYGADVN--------------------------AQDKFGKTAFDISIDNGNED 160
Query: 512 MVEVL 516
+ E+L
Sbjct: 161 LAEIL 165
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHL +G+L++ + LL + A +N+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
+ G T LHLAA G+ ++ L+ + A ++ + + TPLHLAAE G L++ ++LL G
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLK-YGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 19/163 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + D G T LH+ +GHL+++EVLL A++NA+DK
Sbjct: 24 AGQDDEVRILMANGADV-NANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKS--- 79
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
G T LHLAA G+ ++ L+ + A ++ + + TPLHLAAE G
Sbjct: 80 --------------GWTPLHLAAYRGHLEIVEVLLK-YGADVNAMDYQGYTPLHLAAEDG 124
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
L++ ++LL GA ++A D G+ ++ N ++A+I +
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++A D G P+H+ N E+ ++ L+ + + V A+ K
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLK-YAADVNASDKS 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G T H+AA +G + ++E L+K+ G TPL LAAE GH +V VL+K G
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKY---GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N GWTPL +A RGH+E+V +L A V+ D +G + LHLAAE G+L++ + L
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L + A +N++ + G+TA ++ NG DL L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 43/178 (24%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L AA G V +L+ GA++NA D G +H
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNANDWFGITPLH--------------------- 52
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+ NN GH+ ++ +LL AAD+ ++DK+G T LH+AA GHL++VEVLL GA++N
Sbjct: 53 -LVVNN---GHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 525 ATD----------------KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
A D ++ + LL + A +N++ + G+TA ++ NG DL L
Sbjct: 108 AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 73 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 132
L+ + A +N+ G T LHL NG+ ++ L+ +AA ++ TPLHLAA G
Sbjct: 33 LMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLK-YAADVNASDKSGWTPLHLAAYRG 91
Query: 133 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 192
L++ ++LL GA ++A D QG P+H+AA++ E+ ++ L+ + + V A K G T
Sbjct: 92 HLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK-YGADVNAQDKFGKTAF 150
Query: 193 HIAAMQGSVGVIEELMKFD 211
I+ G+ + E L K +
Sbjct: 151 DISIDNGNEDLAEILQKLN 169
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 20/158 (12%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NA D G T LHL
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAND-----------------WFGITPLHLVVN 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
NG+ ++ L+ +AA ++ TPLHLAA G L++ ++LL GA ++A D QG
Sbjct: 57 NGHLEIIEVLLK-YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYT 115
Query: 617 PIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
P+H+AA++ E+ ++ L+ + + V A K + A D+
Sbjct: 116 PLHLAAEDGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA + G T +HL NGH +++E + A S K G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
T LH+AAY G + V LL + D G TPLHLAA G+
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDY-------------QGYTPLHLAAEDGHLE 127
Query: 351 VVRLLLNSAGVQVDAQTQ 368
+V +LL G V+AQ +
Sbjct: 128 IVEVLL-KYGADVNAQDK 144
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 92/175 (52%), Gaps = 17/175 (9%)
Query: 276 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 335
MR S + + LG L AA GQ D VR L+++ D +
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-AARAGQDDEVRILIANGADVNAVD-------------NT 46
Query: 336 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA 395
G+TPLHLAA SG+ +V +LL G VDA G+ PLHLA GH+ +V +LL A
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKH-GADVDA-ADVYGFTPLHLAAMTGHLEIVEVLLKYGA 104
Query: 396 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
D+ + D G T LH+AA GHL++VEVLL GA++NA DK G + + G+
Sbjct: 105 DV-NAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 89/187 (47%), Gaps = 44/187 (23%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + D G T LH+AA GHL++VEVLL GA+++A D
Sbjct: 21 AARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AA GH+ I+ LL+ G V + D G
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADV--------------------------NAFDMTG 113
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
T LH+AA GHL++VEVLL GA++NA DK G+TA ++ N
Sbjct: 114 STPLHLAADEGHLEIVEVLLKYGADVNAQDK-----------------FGKTAFDISIDN 156
Query: 558 GYADLCR 564
G DL +
Sbjct: 157 GNEDLAK 163
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L AA +G ++ VR+L+ + G V+A G PLHLA GH+ +V +LL
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILI-ANGADVNA-VDNTGLTPLHLAAVSGHLEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AD+ +AD G T LH+AA GHL++VEVLL GA++NA D G+ +H AA GH+
Sbjct: 68 KHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHL 126
Query: 452 GIINTLLQKGEKVD 465
I+ LL+ G V+
Sbjct: 127 EIVEVLLKYGADVN 140
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 1/147 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHLAA G+L++ + LL H A +++
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
G T LHLAAM G+ ++ L+ + A ++ + TPLHLAA+ G L++ ++LL G
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLK-YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQ 171
A ++A D G+ ++ N ++A+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 86/151 (56%), Gaps = 4/151 (2%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++A D+ G P+H+AA + E+ ++ L+ H + V A
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLK-HGADVDAADVY 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G T H+AAM G + ++E L+K+ G +T +TPL LAA+ GH +V VL+K G
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKY---GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 278
A ++K G TA ++ NG+ + + R+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAKSCRN 167
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 19/159 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + D G T LH+AA GHL++VEVLL GA+++A D
Sbjct: 24 AGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD----- 77
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
G T LHLAAM G+ ++ L+ + A ++ + TPLHLAA+ G
Sbjct: 78 ------------VYGFTPLHLAAMTGHLEIVEVLLK-YGADVNAFDMTGSTPLHLAADEG 124
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQ 631
L++ ++LL GA ++A D G+ ++ N ++A+
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 73 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 132
L+ + A +N+ G T LHLAA++G+ ++ L+ H A +D + TPLHLAA G
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLK-HGADVDAADVYGFTPLHLAAMTG 91
Query: 133 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 192
L++ ++LL GA ++A D G P+H+AA E+ ++ L+ + + V A K G T
Sbjct: 92 HLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK-YGADVNAQDKFGKTAF 150
Query: 193 HIAAMQGSVGVIEELMKFDRS 213
I+ G+ E+L K R+
Sbjct: 151 DISIDNGN----EDLAKSCRN 167
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 20/158 (12%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NA D G T LHLAA+
Sbjct: 15 GKKLLE-AARAGQDDEVRILIANGADVNAVD-----------------NTGLTPLHLAAV 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
+G+ ++ L+ H A +D + TPLHLAA G L++ ++LL GA ++A D G
Sbjct: 57 SGHLEIVEVLLK-HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGST 115
Query: 617 PIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
P+H+AA E+ ++ L+ + + V A K + A D+
Sbjct: 116 PLHLAADEGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 54/84 (64%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G+TPL +A GH+E+V +L A V+ FD G + LHLAA+ G+L++ + LL + A +
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Query: 81 NSKSRVGRTALHLAAMNGYADLCR 104
N++ + G+TA ++ NG DL +
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAK 163
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 5/156 (3%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + V A G T H+AA+ G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH- 69
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
G V TPL LAA GH +V VL+K GA + TG T +HLAA GH +
Sbjct: 70 --GADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLE 127
Query: 272 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVR 307
++E + A K G TA ++ G D +
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
Query: 370 NGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 429
NG PLHLA GH+ VV LLL AD+ + DKNG+T LH+AA +GHL++V++LL GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 430 EINATDKGGARSIHTAARYGHVGIINTLLQKG 461
++NA DK G +H AAR GH+ ++ LL+ G
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 68/95 (71%), Gaps = 3/95 (3%)
Query: 335 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRA 394
+G TPLHLAA +G+ VV+LLL AG V+A+ + NG PLHLA GH+ VV LLL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 395 ADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 429
AD+ + DKNG+T LH+AA +GHL++V++LL GA
Sbjct: 59 ADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 26/118 (22%)
Query: 404 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEK 463
NG+T LH+AA +GHL++V++LL GA++NA DK G +H AAR GH+ ++ LL+ G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 464 VDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
V+ + DKNG+T LH+AA +GHL++V++LL GA
Sbjct: 61 VN--------------------------AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 18/110 (16%)
Query: 496 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAA 555
NG+T LH+AA +GHL++V++LL GA++NA DK GRT LHLAA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-----------------NGRTPLHLAA 43
Query: 556 MNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 605
NG+ ++ + L+ + A ++ +TPLHLAA G L+V KLLL+ GA
Sbjct: 44 RNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 87 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 146
GRT LHLAA NG+ ++ + L+ + A ++ +TPLHLAA G L+V KLLL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 147 IDATDDQGQKPIHVAAQNNFPEVAQIFLRA 176
++A D G+ P+H+AA+N EV ++ L A
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 547 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
GRT LHLAA NG+ ++ + L+ + A ++ +TPLHLAA G L+V KLLL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 607 IDATDDQGQKPIHVAAQNNFPEVAQIFLRA 636
++A D G+ P+H+AA+N EV ++ L A
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 54 GRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV 113
GR+ LHLAA +G+L+V LL A +N+K + GRT LHLAA NG+ ++ + L+ + A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGAD 60
Query: 114 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 145
++ +TPLHLAA G L+V KLLL+ GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G TPL +A GH+E+V +L A V+ D+ GR+ LHLAA +G+L+V LL A +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLV 107
N+K + GRT LHLAA NG+ ++ + L+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
+TPLHLAA G L+V KLLL+ GA ++A D G+ P+H+AA+N EV ++ L A V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMK 209
A K+G T H+AA G + V++ L++
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 18/94 (19%)
Query: 474 GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDAL 533
GH+ VV LLL AD+ + DKNG+T LH+AA +GHL++V++LL GA++NA DK
Sbjct: 13 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----- 66
Query: 534 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV 567
GRT LHLAA NG+ ++ + L+
Sbjct: 67 ------------NGRTPLHLAARNGHLEVVKLLL 88
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAA GH VV++L++AGA ++K G T +HLAA+NGH +V++ + + A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 286 SKKLGVTALHVAAYFGQADTVRELLS 311
K G T LH+AA G + V+ LL
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 582 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 641
+TPLHLAA G L+V KLLL+ GA ++A D G+ P+H+AA+N EV ++ L A V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 642 TATTKEKERAKDLIAAGKHCE 662
A K L A H E
Sbjct: 62 NAKDKNGRTPLHLAARNGHLE 82
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 187 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 246
+G T H+AA G + V++ L+ + ++A+++ TPL LAA GH VV++L++A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL--EAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA 57
Query: 247 GASCTDENKTGFTAVHLAAQNGHNQVLE 274
GA ++K G T +HLAA+NGH +V++
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVK 85
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 153 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDR 212
G+ P+H+AA+N EV ++ L A V A K+G T H+AA G + V++ L++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 213 SGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 248
++A+++ TPL LAA GH VV++L++AGA
Sbjct: 60 D--VNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 9 EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLK 68
E +N + G TPL +A GH+E+V +L A V+ D+ GR+ LHLAA +G+L+
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 69 VCDALLTHKAF 79
V LL A+
Sbjct: 83 VVKLLLEAGAY 93
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 13/104 (12%)
Query: 256 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 315
G T +HLAA+NGH +V++ + + A K G T LH+AA G + V+ LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---- 56
Query: 316 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 359
GA + ++G TPLHLAA +G+ VV+LLL +
Sbjct: 57 -------AGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAG 91
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 91/189 (48%), Gaps = 44/189 (23%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + D G T LH+AA GHL++VEVLL GA++NA D
Sbjct: 21 AARAGQDDEVRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
GA +H AA GH+ I+ LL+ G V+ + D G
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGADVN--------------------------AKDYEG 113
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
T LH+AA GHL++VEVLL GA++NA DK G+TA ++ N
Sbjct: 114 FTPLHLAAYDGHLEIVEVLLKYGADVNAQDK-----------------FGKTAFDISIDN 156
Query: 558 GYADLCRFL 566
G DL L
Sbjct: 157 GNEDLAEIL 165
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHLAA+ G+L++ + LL + A +N+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
G T LHLAA NG+ ++ L+ H A ++ TPLHLAA G L++ ++LL G
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLK-HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 19/163 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + D G T LH+AA GHL++VEVLL GA++NA D
Sbjct: 24 AGQDDEVRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD----- 77
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
G T LHLAA NG+ ++ L+ H A ++ TPLHLAA G
Sbjct: 78 ------------NYGATPLHLAADNGHLEIVEVLLK-HGADVNAKDYEGFTPLHLAAYDG 124
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
L++ ++LL GA ++A D G+ ++ N ++A+I +
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 82/147 (55%), Gaps = 4/147 (2%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++ATD G P+H+AA+ E+ ++ L+ + + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK-YGADVNAWDNY 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G T H+AA G + ++E L+K ++A++ TPL LAA GH +V VL+K G
Sbjct: 80 GATPLHLAADNGHLEIVEVLLK--HGADVNAKD-YEGFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 91/162 (56%), Gaps = 6/162 (3%)
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
S +G+ L AA G D R L+ + A ++ TPLHLAA+ G L++ ++LL
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMAN-GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 203
GA ++A D+ G P+H+AA N E+ ++ L+ H + V A +G T H+AA G + +
Sbjct: 70 GADVNAWDNYGATPLHLAADNGHLEIVEVLLK-HGADVNAKDYEGFTPLHLAAYDGHLEI 128
Query: 204 IEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 245
+E L+K+ ++A+++ + T ++ + G+ ++ +L K
Sbjct: 129 VEVLLKYGAD--VNAQDKFGK-TAFDISIDNGNEDLAEILQK 167
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + V AT G+T H+AA G + ++E L+K+
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG 70
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
++A + ATPL LAA+ GH +V VL+K GA ++ GFT +HLAA +GH +
Sbjct: 71 AD--VNAWDNYG-ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLE 127
Query: 272 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 304
++E + A K G TA ++ G D
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 16/136 (11%)
Query: 289 LGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN 348
LG T LH+AA G + V LL + D G TPLHLAA +G+
Sbjct: 46 LGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD-------------NYGATPLHLAADNGH 92
Query: 349 ENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTC 408
+V +LL G V+A+ E G+ PLHLA + GH+ +V +LL AD + + DK GKT
Sbjct: 93 LEIVEVLLKH-GADVNAKDYE-GFTPLHLAAYDGHLEIVEVLLKYGAD-VNAQDKFGKTA 149
Query: 409 LHIAATHGHLQMVEVL 424
I+ +G+ + E+L
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 544 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 603
S +G+ L AA G D R L+ + A ++ TPLHLAA+ G L++ ++LL
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMAN-GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 604 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIAAGKHCEG 663
GA ++A D+ G P+H+AA N E+ ++ L+ H + V A E L A H E
Sbjct: 70 GADVNAWDNYGATPLHLAADNGHLEIVEVLLK-HGADVNAKDYEGFTPLHLAAYDGHLEI 128
Query: 664 MATEXXXXXXGADSAGRILTATDRRNIEFLDVLIENEQKEV 704
+ GAD + A D+ D+ I+N +++
Sbjct: 129 VEV---LLKYGAD-----VNAQDKFGKTAFDISIDNGNEDL 161
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 98/185 (52%), Gaps = 30/185 (16%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L AA +G ++ VR+L+ + G V+A + G PLHLA + GH +V +LL
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILM-ANGADVNAHDDQ-GSTPLHLAAWIGHPEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AD+ + D +G T LH+AA +GHL++VEVLL GA++NA D G +H AA GH+
Sbjct: 68 KHGADV-NARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHL 126
Query: 452 GIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 511
I+ LL+ G V+ + DK GKT I+ +G+
Sbjct: 127 EIVEVLLKHGADVN--------------------------AQDKFGKTAFDISIDNGNED 160
Query: 512 MVEVL 516
+ E+L
Sbjct: 161 LAEIL 165
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++A DDQG P+H+AA PE+ ++ L+ H + V A D
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLK-HGADVNARDTD 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G T H+AA G + ++E L+K+ ++A++ TPL LAA+ GH +V VL+K G
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKY--GADVNAQDAYG-LTPLHLAADRGHLEIVEVLLKHG 136
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 89/189 (47%), Gaps = 44/189 (23%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + D G T LH+AA GH ++VEVLL GA++NA D
Sbjct: 21 AARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AA GH+ I+ LL+ G V+ + D G
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGADVN--------------------------AQDAYG 113
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
T LH+AA GHL++VEVLL GA++NA DK G+TA ++ N
Sbjct: 114 LTPLHLAADRGHLEIVEVLLKHGADVNAQDK-----------------FGKTAFDISIDN 156
Query: 558 GYADLCRFL 566
G DL L
Sbjct: 157 GNEDLAEIL 165
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D +G + LHLAA G+ ++ + LL H A +N++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
G T LHLAA NG+ ++ L+ + A ++ TPLHLAA+ G L++ ++LL G
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLK-YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG 136
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 19/163 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + D G T LH+AA GH ++VEVLL GA++NA D
Sbjct: 24 AGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD--- 79
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
G T LHLAA NG+ ++ L+ + A ++ TPLHLAA+ G
Sbjct: 80 --------------GWTPLHLAADNGHLEIVEVLLK-YGADVNAQDAYGLTPLHLAADRG 124
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
L++ ++LL GA ++A D G+ ++ N ++A+I +
Sbjct: 125 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N + + GWTPL +A + GH+E+V +L A V+ D G + LHLAA+ G+L++ + L
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L H A +N++ + G+TA ++ NG DL L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 2/151 (1%)
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 120
AA G L+ + A +N+ G T LHLAA G+ ++ L+ H A ++
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLK-HGADVNARDTD 79
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
TPLHLAA+ G L++ ++LL GA ++A D G P+H+AA E+ ++ L+ H +
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK-HGAD 138
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
V A K G T I+ G+ + E L K +
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 20/158 (12%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NA D G T LHLAA
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAHDDQ-----------------GSTPLHLAAW 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
G+ ++ L+ H A ++ TPLHLAA+ G L++ ++LL GA ++A D G
Sbjct: 57 IGHPEIVEVLLK-HGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLT 115
Query: 617 PIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
P+H+AA E+ ++ L+ H + V A K + A D+
Sbjct: 116 PLHLAADRGHLEIVEVLLK-HGADVNAQDKFGKTAFDI 152
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 19/161 (11%)
Query: 264 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 323
A Q+ ++L M + +N + + G T LH+AA+ G + V LL H D
Sbjct: 24 AGQDDEVRIL--MANGADVNAHDDQ-GSTPLHLAAWIGHPEIVEVLLKHGADVNARDT-- 78
Query: 324 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGH 383
G TPLHLAA +G+ +V +LL G V+AQ G PLHLA GH
Sbjct: 79 -----------DGWTPLHLAADNGHLEIVEVLL-KYGADVNAQDAY-GLTPLHLAADRGH 125
Query: 384 VTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
+ +V +LL AD + + DK GKT I+ +G+ + E+L
Sbjct: 126 LEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N G TPL +A GH E+V +L + A V+ D +G + LHLAA++G+L++ + L
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L + A +N++ G T LHLAA G+ ++ L+ H A ++ +T ++ + G
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGN 158
Query: 134 LQVCKLL 140
+ ++L
Sbjct: 159 EDLAEIL 165
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 91.7 bits (226), Expect = 2e-18, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 97/179 (54%), Gaps = 29/179 (16%)
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
AA +GN++ V+ LL + G +A + +G PLH A GH +V LLLS+ AD + D
Sbjct: 11 AAENGNKDRVKDLLEN-GADPNA-SDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKD 67
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGE 462
+G+T LH AA +GH ++V++LL +GA+ NA D G +H AA GH I+
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVK------- 120
Query: 463 KVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
LLLS+ AD ++D +G+T L +A HG+ ++V++L QG
Sbjct: 121 ------------------LLLSKGAD-PNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 90.5 bits (223), Expect = 4e-18, Method: Composition-based stats.
Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 16/165 (9%)
Query: 297 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 356
AA G D V++LL + +DP S G TPLH AA +G++ +V+LLL
Sbjct: 11 AAENGNKDRVKDLLEN-----GADPNASDS--------DGRTPLHYAAENGHKEIVKLLL 57
Query: 357 NSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHG 416
S G +A+ +G PLH A GH +V LLLS+ AD + D +G+T LH AA +G
Sbjct: 58 -SKGADPNAK-DSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENG 114
Query: 417 HLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
H ++V++LL +GA+ N +D G + A +G+ I+ L ++G
Sbjct: 115 HKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 87.8 bits (216), Expect = 3e-17, Method: Composition-based stats.
Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
L+ A G+ + V +L N A + D +GR+ LH AAE+G+ ++ LL+ A N+K
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
GRT LH AA NG+ ++ + L+ A + +TPLH AAE G ++ KLLL G
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 126
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
A + +D G+ P+ +A ++ E+ ++
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 80.5 bits (197), Expect = 4e-15, Method: Composition-based stats.
Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 16/166 (9%)
Query: 264 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 323
AA+NG+ ++++ + A S G T LH AA G + V+ LLS +DP
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSK-----GADPNA 65
Query: 324 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGH 383
S G TPLH AA +G++ +V+LLL S G +A+ +G PLH A GH
Sbjct: 66 KDS--------DGRTPLHYAAENGHKEIVKLLL-SKGADPNAK-DSDGRTPLHYAAENGH 115
Query: 384 VTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 429
+V LLLS+ AD ++D +G+T L +A HG+ ++V++L QG
Sbjct: 116 KEIVKLLLSKGAD-PNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 80.5 bits (197), Expect = 4e-15, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 24/155 (15%)
Query: 485 RAADLLQ------SADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKA 538
R DLL+ ++D +G+T LH AA +GH ++V++LL +GA+ NA D
Sbjct: 19 RVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD--------- 69
Query: 539 FINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCK 598
GRT LH AA NG+ ++ + L+ A + +TPLH AAE G ++ K
Sbjct: 70 --------GRTPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGRTPLHYAAENGHKEIVK 120
Query: 599 LLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
LLL GA + +D G+ P+ +A ++ E+ ++
Sbjct: 121 LLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N S G TPL A GH E+V +L+ A + D +GR+ LH AAE+G+ ++ LL
Sbjct: 31 NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 90
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
+ A N+K GRT LH AA NG+ ++ + L+ A + +TPL LA E G
Sbjct: 91 SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL-SKGADPNTSDSDGRTPLDLAREHGNE 149
Query: 135 QVCKLLLDLGASID 148
++ KLL G ++
Sbjct: 150 EIVKLLEKQGGWLE 163
Score = 77.0 bits (188), Expect = 5e-14, Method: Composition-based stats.
Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 26/163 (15%)
Query: 412 AATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNN- 470
AA +G+ V+ LL GA+ NA+D G +H AA GH I+ LL KG + ++
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 471 -------LACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEI 523
GH +V LLLS+ AD + D +G+T LH AA +GH ++V++LL +GA+
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 129
Query: 524 NATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
N +D GRT L LA +G ++ + L
Sbjct: 130 NTSDS-----------------DGRTPLDLAREHGNEEIVKLL 155
Score = 76.3 bits (186), Expect = 8e-14, Method: Composition-based stats.
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL AAE GH +V++L+ GA ++ G T +H AA+NGH ++++ + S A
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA 98
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 345
G T LH AA G + V+ LLS +DP T S G TPL LA
Sbjct: 99 KDSDGRTPLHYAAENGHKEIVKLLLSK-----GADPNTSDS--------DGRTPLDLARE 145
Query: 346 SGNENVVRLLLNSAG 360
GNE +V+LL G
Sbjct: 146 HGNEEIVKLLEKQGG 160
Score = 72.8 bits (177), Expect = 9e-13, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 79/157 (50%), Gaps = 9/157 (5%)
Query: 94 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 153
AA NG D + L+ ++ A + +TPLH AAE G ++ KLLL GA +A D
Sbjct: 11 AAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD 69
Query: 154 GQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
G+ P+H AA+N E+ ++ L A P+ A DG T H AA G +++ L+
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPN---AKDSDGRTPLHYAAENGHKEIVKLLLS-- 124
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 248
G + TPL LA E G+ +V++L K G
Sbjct: 125 -KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 517 LGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDI 576
L + AE D+V D LL + A N+ GRT LH AA NG+ ++ + L+ A +
Sbjct: 8 LIEAAENGNKDRVKD-LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLL-SKGADPNA 65
Query: 577 LTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
+TPLH AAE G ++ KLLL GA +A D G+ P+H AA+N E+ ++ L
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 123
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 41/184 (22%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATT 185
AAE G K LL+ GA +A+D G+ P+H AA+N E+ ++ L A P+ A
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN---AKD 67
Query: 186 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 245
DG T PL AAE GH +V++L+
Sbjct: 68 SDGRT------------------------------------PLHYAAENGHKEIVKLLLS 91
Query: 246 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADT 305
GA ++ G T +H AA+NGH ++++ + S A S G T L +A G +
Sbjct: 92 KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEI 151
Query: 306 VREL 309
V+ L
Sbjct: 152 VKLL 155
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 88/170 (51%), Gaps = 27/170 (15%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L AA G V +L+ GA++NATD G +H AA YGH+ I+ LL+ G V
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV 73
Query: 465 DV------TTNNLAC--GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 516
+ T +LA GH+ +V +LL AD+ + D G T LH+AA GHL++VEVL
Sbjct: 74 NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 517 LGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
L GA++NA DK G+TA ++ NG DL L
Sbjct: 133 LKHGADVNAQDK-----------------FGKTAFDISIDNGNEDLAEIL 165
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 30/185 (16%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L AA +G ++ VR+L+ + G V+A T +G PLHLA GH+ +V +LL
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILM-ANGADVNA-TDASGLTPLHLAATYGHLEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AD + + D G T LH+AA GHL++VEVLL GA++NA D G +H AA GH+
Sbjct: 68 KHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHL 126
Query: 452 GIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 511
I+ LL+ G V+ + DK GKT I+ +G+
Sbjct: 127 EIVEVLLKHGADVN--------------------------AQDKFGKTAFDISIDNGNED 160
Query: 512 MVEVL 516
+ E+L
Sbjct: 161 LAEIL 165
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 1/151 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHLAA +G+L++ + LL H A +N+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
+G T LHLAA+ G+ ++ L+ H A ++ + TPLHLAA G L++ ++LL G
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 19/163 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + D +G T LH+AAT+GHL++VEVLL GA++NA D
Sbjct: 24 AGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID----- 77
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
+G T LHLAA+ G+ ++ L+ H A ++ + TPLHLAA G
Sbjct: 78 ------------IMGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMG 124
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
L++ ++LL GA ++A D G+ ++ N ++A+I +
Sbjct: 125 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++ATD G P+H+AA E+ ++ L+ H + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIM 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G+T H+AA+ G + ++E L+K ++A + + TPL LAA GH +V VL+K G
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLK--HGADVNAVDTWGD-TPLHLAAIMGHLEIVEVLLKHG 136
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 73 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 132
L+ + A +N+ G T LHLAA G+ ++ L+ H A ++ + + TPLHLAA G
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIMGSTPLHLAALIG 91
Query: 133 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 192
L++ ++LL GA ++A D G P+H+AA E+ ++ L+ H + V A K G T
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAF 150
Query: 193 HIAAMQGSVGVIEELMKFD 211
I+ G+ + E L K +
Sbjct: 151 DISIDNGNEDLAEILQKLN 169
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 20/158 (12%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NATD G T LHLAA
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNATDAS-----------------GLTPLHLAAT 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
G+ ++ L+ H A ++ + + TPLHLAA G L++ ++LL GA ++A D G
Sbjct: 57 YGHLEIVEVLLK-HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDT 115
Query: 617 PIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
P+H+AA E+ ++ L+ H + V A K + A D+
Sbjct: 116 PLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDI 152
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 16/161 (9%)
Query: 264 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 323
AA+ G + + + ++ A + G+T LH+AA +G + V LL H D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI-- 78
Query: 324 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGH 383
G TPLHLAA G+ +V +LL G V+A G PLHLA GH
Sbjct: 79 -----------MGSTPLHLAALIGHLEIVEVLLKH-GADVNA-VDTWGDTPLHLAAIMGH 125
Query: 384 VTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
+ +V +LL AD + + DK GKT I+ +G+ + E+L
Sbjct: 126 LEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + V AT G T H+AA G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH- 69
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
G + +TPL LAA GH +V VL+K GA + G T +HLAA GH +
Sbjct: 70 --GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLE 127
Query: 272 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 304
++E + A K G TA ++ G D
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA + +G T +HLAA GH +++E + A +G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
T LH+AA G + V LL H D G TPLHLAA G+
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDT-------------WGDTPLHLAAIMGHLE 127
Query: 351 VVRLLLNSAGVQVDAQTQ 368
+V +LL G V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 30/185 (16%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L AA +G ++ VR+L+ + G V+A T +G PLHLA GH+ +V +LL
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILM-ANGADVNA-TDASGLTPLHLAATYGHLEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AD + + D G T LH+AA GHL++VEVLL GA++NA D G +H AA GH+
Sbjct: 68 KHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHL 126
Query: 452 GIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 511
I+ LL+ G V+ + DK GKT I+ +G+
Sbjct: 127 EIVEVLLKHGADVN--------------------------AQDKFGKTAFDISIDNGNED 160
Query: 512 MVEVL 516
+ E+L
Sbjct: 161 LAEIL 165
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHLAA +G+L++ + LL H A +N+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
G T LHLAA+ G+ ++ L+ H A ++ + TPLHLAA G L++ ++LL G
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 19/163 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + D +G T LH+AAT+GHL++VEVLL GA++NA D
Sbjct: 24 AGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID----- 77
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
G T LHLAA+ G+ ++ L+ H A ++ + TPLHLAA G
Sbjct: 78 ------------IXGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMG 124
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
L++ ++LL GA ++A D G+ ++ N ++A+I +
Sbjct: 125 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++ATD G P+H+AA E+ ++ L+ H + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIX 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G+T H+AA+ G + ++E L+K ++A + + TPL LAA GH +V VL+K G
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLK--HGADVNAVDTWGD-TPLHLAAIMGHLEIVEVLLKHG 136
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 73 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 132
L+ + A +N+ G T LHLAA G+ ++ L+ H A ++ + + TPLHLAA G
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIXGSTPLHLAALIG 91
Query: 133 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 192
L++ ++LL GA ++A D G P+H+AA E+ ++ L+ H + V A K G T
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAF 150
Query: 193 HIAAMQGSVGVIEELMKFD 211
I+ G+ + E L K +
Sbjct: 151 DISIDNGNEDLAEILQKLN 169
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 20/158 (12%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NATD G T LHLAA
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNATDAS-----------------GLTPLHLAAT 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
G+ ++ L+ H A ++ + + TPLHLAA G L++ ++LL GA ++A D G
Sbjct: 57 YGHLEIVEVLLK-HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDT 115
Query: 617 PIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
P+H+AA E+ ++ L+ H + V A K + A D+
Sbjct: 116 PLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDI 152
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 16/161 (9%)
Query: 264 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 323
AA+ G + + + ++ A + G+T LH+AA +G + V LL H D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI-- 78
Query: 324 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGH 383
G TPLHLAA G+ +V +LL G V+A G PLHLA GH
Sbjct: 79 -----------XGSTPLHLAALIGHLEIVEVLLKH-GADVNA-VDTWGDTPLHLAAIMGH 125
Query: 384 VTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
+ +V +LL AD + + DK GKT I+ +G+ + E+L
Sbjct: 126 LEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + V AT G T H+AA G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH- 69
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
G + +TPL LAA GH +V VL+K GA + G T +HLAA GH +
Sbjct: 70 --GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLE 127
Query: 272 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 304
++E + A K G TA ++ G D
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 3/123 (2%)
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
AA +G ++ VR+L+ + G V+A T +NG PLHLA G + +V +LL AD + ++D
Sbjct: 13 AAAAGQDDEVRILM-ANGADVNA-TDDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASD 69
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGE 462
G T LH+AA GHL++VEVLL GA++NA D+ G +H AA G + I+ LL+ G
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 463 KVD 465
V+
Sbjct: 130 DVN 132
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 90/189 (47%), Gaps = 44/189 (23%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + D NG T LH+AA +G L++VEVLL GA++NA+D
Sbjct: 13 AAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA 71
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AA GH+ I+ LL+ G V+ + D+ G
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGADVN--------------------------AYDRAG 105
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
T LH+AA G L++VEVLL GA++NA D +G TA ++
Sbjct: 106 WTPLHLAALSGQLEIVEVLLKHGADVNAQDA-----------------LGLTAFDISINQ 148
Query: 558 GYADLCRFL 566
G DL L
Sbjct: 149 GQEDLAEIL 157
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 19/162 (11%)
Query: 472 ACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCD 531
A G V +L++ AD+ + D NG T LH+AA +G L++VEVLL GA++NA+D
Sbjct: 15 AAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDS--- 70
Query: 532 ALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEA 591
G T LHLAA +G+ ++ L+ H A ++ TPLHLAA +
Sbjct: 71 --------------AGITPLHLAAYDGHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALS 115
Query: 592 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
GQL++ ++LL GA ++A D G ++ ++A+I
Sbjct: 116 GQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHLAA +G L++ + LL + A +N+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
G T LHLAA +G+ ++ L+ H A ++ TPLHLAA +GQL++ ++LL G
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
A ++A D G ++ ++A+I
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 18/157 (11%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++ATDD G P+H+AA N E+ ++ L+ + + V A+
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK-NGADVNASDSA 71
Query: 188 GNTCAHIAAMQGSVGVIEELMK-------FDRSGVISARNRVTEATPLQLAAEGGHANVV 240
G T H+AA G + ++E L+K +DR+G TPL LAA G +V
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW----------TPLHLAALSGQLEIV 121
Query: 241 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR 277
VL+K GA ++ G TA ++ G + E ++
Sbjct: 122 EVLLKHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N G TPL +A G +E+V +L N A V+ D G + LHLAA G+L++ + L
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVL 91
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L H A +N+ R G T LHLAA++G ++ L+ H A ++ T ++ GQ
Sbjct: 92 LKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK-HGADVNAQDALGLTAFDISINQGQ 150
Query: 134 LQVCKLL 140
+ ++L
Sbjct: 151 EDLAEIL 157
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + AA EV L A+ + V AT +G T H+AA G + ++E L+K
Sbjct: 5 DLGKKLLEAAAAGQDDEVR--ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK-- 60
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
+G + TPL LAA GH +V VL+K GA ++ G+T +HLAA +G +
Sbjct: 61 -NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLE 119
Query: 272 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 304
++E + A LG+TA ++ GQ D
Sbjct: 120 IVEVLLKHGADVNAQDALGLTAFDISINQGQED 152
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 66/136 (48%), Gaps = 14/136 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA + G T +HLAA NG +++E + + A S G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
+T LH+AAY G + V LL H D +G TPLHLAA SG
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYD-------------RAGWTPLHLAALSGQLE 119
Query: 351 VVRLLLNSAGVQVDAQ 366
+V +LL G V+AQ
Sbjct: 120 IVEVLLKH-GADVNAQ 134
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 94 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 153
AA G D R L+ + A ++ TPLHLAA GQL++ ++LL GA ++A+D
Sbjct: 13 AAAAGQDDEVRILMA-NGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA 71
Query: 154 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK 209
G P+H+AA + E+ ++ L+ H + V A + G T H+AA+ G + ++E L+K
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 19/139 (13%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NATD G T LHLAA
Sbjct: 7 GKKLLEAAAA-GQDDEVRILMANGADVNATDDN-----------------GLTPLHLAAA 48
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
NG ++ L+ + A ++ TPLHLAA G L++ ++LL GA ++A D G
Sbjct: 49 NGQLEIVEVLLK-NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWT 107
Query: 617 PIHVAAQNNFPEVAQIFLR 635
P+H+AA + E+ ++ L+
Sbjct: 108 PLHLAALSGQLEIVEVLLK 126
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query: 50 FDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHD 109
F Q+ L AA G L+ + A +N+ G T LHLAA NG ++ L+
Sbjct: 2 FGQDLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK- 60
Query: 110 HAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEV 169
+ A ++ TPLHLAA G L++ ++LL GA ++A D G P+H+AA + E+
Sbjct: 61 NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEI 120
Query: 170 AQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 205
++ L+ H + V A G T I+ QG + E
Sbjct: 121 VEVLLK-HGADVNAQDALGLTAFDISINQGQEDLAE 155
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 137/292 (46%), Gaps = 36/292 (12%)
Query: 348 NENV--VRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNG 405
NE+V V+ LL G V+ Q +E G+ PLH A +V LLL AD + KNG
Sbjct: 35 NEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK-KNG 92
Query: 406 KTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVD 465
T +AA G ++++++ L +GA++N D G + AA YG V + L ++G V+
Sbjct: 93 ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 152
Query: 466 VTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQ-GAEIN 524
L + + + K G T L AA GH++++++LL + GA++N
Sbjct: 153 ----------------LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 196
Query: 525 ATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTP 584
A D + L H + S V + L+ DH A +++ R +TP
Sbjct: 197 ACDNMGRNALIHALLSSDDSDV--------------EAITHLLLDHGADVNVRGERGKTP 242
Query: 585 LHLAAEAGQLQVCKLLLDLG-ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
L LA E L + + LL+ I+ TD G+ + +A + ++A++ +
Sbjct: 243 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 294
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 131/315 (41%), Gaps = 28/315 (8%)
Query: 161 AAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARN 220
A QN ++ Q L ++ + G T H A ++E L++ V+ +N
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 91
Query: 221 RVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM---- 276
ATP LAA G ++++ + GA + + GFTA AA G + L+ +
Sbjct: 92 G---ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 148
Query: 277 ------RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGE 330
R +K +K G TAL AA G + ++ LL + V + G + L
Sbjct: 149 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL-- 206
Query: 331 LGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLL 390
+ L + S E + LLL+ G V+ + E G PL LA H+ +V L
Sbjct: 207 ------IHALLSSDDSDVEAITHLLLDH-GADVNVRG-ERGKTPLILAVEKKHLGLVQRL 258
Query: 391 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
L + + D +GKT L +A ++ E+L +GA + D + TA R
Sbjct: 259 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD-----LVMTARRNYD 313
Query: 451 VGIINTLLQKGEKVD 465
++ LL G K D
Sbjct: 314 HSLVKVLLSHGAKED 328
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 113/248 (45%), Gaps = 19/248 (7%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
GWTPL A ++V +L + A + + G + LAA G +K+ L+ A +
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV-------IDILTLRK--QTPLHLAAEA 131
N G TA AA+ G +FL A V D LRK T L AAE
Sbjct: 119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178
Query: 132 GQLQVCKLLLD-LGASIDATDDQGQKP-IHVAAQNNFPEVAQI--FLRAHPSLVTATTKD 187
G ++V K+LLD +GA ++A D+ G+ IH ++ +V I L H + V +
Sbjct: 179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER 238
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKA 246
G T +A + +G+++ L++ + I + ++ T L LA E + +L K
Sbjct: 239 GKTPLILAVEKKHLGLVQRLLEQEH---IEINDTDSDGKTALLLAVELKLKKIAELLCKR 295
Query: 247 GAS--CTD 252
GAS C D
Sbjct: 296 GASTDCGD 303
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 128/292 (43%), Gaps = 38/292 (13%)
Query: 264 AAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPP 322
A QN +++++ A +N ++ G T LH A + D V LL H +DP
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-----GADPV 86
Query: 323 TGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGG 382
L ++G TP LAA +G+ +++L L S G V+ + G+ A G
Sbjct: 87 --------LRKKNGATPFILAAIAGSVKLLKLFL-SKGADVN-ECDFYGFTAFMEAAVYG 136
Query: 383 HVTVVGLLLSRAADL---------LQSADKNGKTCLHIAATHGHLQMVEVLLGQ-GAEIN 432
V + L R A++ + K G T L AA GH++++++LL + GA++N
Sbjct: 137 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 196
Query: 433 ATDKGGARS-IH---TAARYGHVGIINTLLQKGEKVDVTTNN--------LACGHVTVVG 480
A D G + IH ++ I + LL G V+V + H+ +V
Sbjct: 197 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 256
Query: 481 LLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
LL + + D +GKT L +A ++ E+L +GA + D V A
Sbjct: 257 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLVMTA 308
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 108/257 (42%), Gaps = 18/257 (7%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGR-SALHLAAEHGYLKVCDALLTHKAFINSK 83
L+ A ++LV +L A V+ ++EG + LH A + + + LL H A +
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
+ G T LAA+ G L + + A ++ T AA G+++ K L
Sbjct: 89 KKNGATPFILAAIAGSVKLLKLFL-SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 147
Query: 144 GASID----ATDDQ------GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC-- 191
GA+++ +DQ G + AA+ EV +I L + V A G
Sbjct: 148 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 207
Query: 192 -AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV-RVLVKAGAS 249
A +++ V I L+ D ++ R + TPL LA E H +V R+L +
Sbjct: 208 HALLSSDDSDVEAITHLL-LDHGADVNVRGERGK-TPLILAVEKKHLGLVQRLLEQEHIE 265
Query: 250 CTDENKTGFTAVHLAAQ 266
D + G TA+ LA +
Sbjct: 266 INDTDSDGKTALLLAVE 282
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 138/296 (46%), Gaps = 36/296 (12%)
Query: 348 NENV--VRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNG 405
NE+V V+ LL G V+ Q +E G+ PLH A +V LLL AD + KNG
Sbjct: 15 NEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK-KNG 72
Query: 406 KTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVD 465
T +AA G ++++++ L +GA++N D G + AA YG V + L ++G V+
Sbjct: 73 ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132
Query: 466 VTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQ-GAEIN 524
L + + + K G T L AA GH++++++LL + GA++N
Sbjct: 133 ----------------LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 525 ATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTP 584
A D + L H + S V + L+ DH A +++ R +TP
Sbjct: 177 ACDNMGRNALIHALLSSDDSDV--------------EAITHLLLDHGADVNVRGERGKTP 222
Query: 585 LHLAAEAGQLQVCKLLLDLG-ASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 639
L LA E L + + LL+ I+ TD G+ + +A + ++A++ + S
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 113/248 (45%), Gaps = 19/248 (7%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
GWTPL A ++V +L + A + + G + LAA G +K+ L+ A +
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV-------IDILTLRK--QTPLHLAAEA 131
N G TA AA+ G +FL A V D LRK T L AAE
Sbjct: 99 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158
Query: 132 GQLQVCKLLLD-LGASIDATDDQGQKP-IHVAAQNNFPEVAQI--FLRAHPSLVTATTKD 187
G ++V K+LLD +GA ++A D+ G+ IH ++ +V I L H + V +
Sbjct: 159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER 218
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKA 246
G T +A + +G+++ L++ + I + ++ T L LA E + +L K
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEH---IEINDTDSDGKTALLLAVELKLKKIAELLCKR 275
Query: 247 GAS--CTD 252
GAS C D
Sbjct: 276 GASTDCGD 283
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 127/289 (43%), Gaps = 38/289 (13%)
Query: 264 AAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPP 322
A QN +++++ A +N ++ G T LH A + D V LL H +DP
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-----GADPV 66
Query: 323 TGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGG 382
L ++G TP LAA +G+ +++L L S G V+ + G+ A G
Sbjct: 67 --------LRKKNGATPFLLAAIAGSVKLLKLFL-SKGADVN-ECDFYGFTAFMEAAVYG 116
Query: 383 HVTVVGLLLSRAADL---------LQSADKNGKTCLHIAATHGHLQMVEVLLGQ-GAEIN 432
V + L R A++ + K G T L AA GH++++++LL + GA++N
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 433 ATDKGGARS-IH---TAARYGHVGIINTLLQKGEKVDVTTNN--------LACGHVTVVG 480
A D G + IH ++ I + LL G V+V + H+ +V
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236
Query: 481 LLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKV 529
LL + + D +GKT L +A ++ E+L +GA + D V
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV 285
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 120/285 (42%), Gaps = 23/285 (8%)
Query: 161 AAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARN 220
A QN ++ Q L ++ + G T H A ++E L++ V+ +N
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 221 RVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM---- 276
ATP LAA G ++++ + GA + + GFTA AA G + L+ +
Sbjct: 72 G---ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 277 ------RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGE 330
R +K +K G TAL AA G + ++ LL + V + G + L
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL-- 186
Query: 331 LGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLL 390
+ L + S E + LLL+ G V+ + E G PL LA H+ +V L
Sbjct: 187 ------IHALLSSDDSDVEAITHLLLDH-GADVNVRG-ERGKTPLILAVEKKHLGLVQRL 238
Query: 391 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATD 435
L + + D +GKT L +A ++ E+L +GA + D
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 108/257 (42%), Gaps = 18/257 (7%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGR-SALHLAAEHGYLKVCDALLTHKAFINSK 83
L+ A ++LV +L A V+ ++EG + LH A + + + LL H A +
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
+ G T LAA+ G L + + A V + T AA G+++ K L
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKR 127
Query: 144 GASID----ATDDQ------GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC-- 191
GA+++ +DQ G + AA+ EV +I L + V A G
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187
Query: 192 -AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV-RVLVKAGAS 249
A +++ V I L+ D ++ R + TPL LA E H +V R+L +
Sbjct: 188 HALLSSDDSDVEAITHLL-LDHGADVNVRGERGK-TPLILAVEKKHLGLVQRLLEQEHIE 245
Query: 250 CTDENKTGFTAVHLAAQ 266
D + G TA+ LA +
Sbjct: 246 INDTDSDGKTALLLAVE 262
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 31/175 (17%)
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQEN-GYNPLHLACFGGHVTVVGLLLSRAADLLQSA 401
AA +G ++ VR+L+ + DA ++ G PLH+A GH+ +V +LL AD+ +
Sbjct: 9 AARAGQDDEVRILMANG---ADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV-NAV 64
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
D NG T LH+AA+ GHL++VEVLL GA++NA D G ++ AA +GH+ I+ LL+ G
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHG 124
Query: 462 EKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 516
V+ + DK GKT I+ G+ + E+L
Sbjct: 125 ADVN--------------------------AQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 43/178 (24%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L AA G V +L+ GA+ NA D G +H AA
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGADANAYDHYGRTPLHMAA------------------ 43
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
A GH+ +V +LL AD+ + D NG T LH+AA+ GHL++VEVLL GA++N
Sbjct: 44 -------AVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 525 ATD----------------KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
A D ++ + LL H A +N++ + G+TA ++ G DL L
Sbjct: 96 AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 82/147 (55%), Gaps = 4/147 (2%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA +A D G+ P+H+AA E+ ++ LR + + V A +
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGADVNAVDTN 67
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G T H+AA G + ++E L+K+ ++A++ T TPL LAA GH +V VL+K G
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGAD--VNAKD-ATGITPLYLAAYWGHLEIVEVLLKHG 124
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ G+ + E
Sbjct: 125 ADVNAQDKFGKTAFDISIDIGNEDLAE 151
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A + +D GR+ LH+AA G+L++ + LL + A +N+
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
G T LHLAA G+ ++ L+ + A ++ TPL+LAA G L++ ++LL G
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLK-YGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHG 124
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
A ++A D G+ ++ ++A+I
Sbjct: 125 ADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 19/161 (11%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD + D G+T LH+AA GHL++VEVLL GA++NA D
Sbjct: 12 AGQDDEVRILMANGADA-NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN--- 67
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
G T LHLAA G+ ++ L+ + A ++ TPL+LAA G
Sbjct: 68 --------------GTTPLHLAASLGHLEIVEVLLK-YGADVNAKDATGITPLYLAAYWG 112
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
L++ ++LL GA ++A D G+ ++ ++A+I
Sbjct: 113 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N G TPL +A GH+E+V +L N A V+ D G + LHLAA G+L++ + LL
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLL 88
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
+ A +N+K G T L+LAA G+ ++ L+ H A ++ +T ++ + G
Sbjct: 89 KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDIGNE 147
Query: 135 QVCKLL 140
+ ++L
Sbjct: 148 DLAEIL 153
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 73 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 132
L+ + A N+ GRT LH+AA G+ ++ L+ + A V + T TPLHLAA G
Sbjct: 21 LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDT-NGTTPLHLAASLG 79
Query: 133 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 192
L++ ++LL GA ++A D G P+++AA E+ ++ L+ H + V A K G T
Sbjct: 80 HLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK-HGADVNAQDKFGKTAF 138
Query: 193 HIAAMQGSVGVIEEL 207
I+ G+ + E L
Sbjct: 139 DISIDIGNEDLAEIL 153
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 20/158 (12%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA+ NA D GRT LH+AA
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGADANAYD-----------------HYGRTPLHMAAA 44
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
G+ ++ L+ + A V + T TPLHLAA G L++ ++LL GA ++A D G
Sbjct: 45 VGHLEIVEVLLRNGADVNAVDT-NGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGIT 103
Query: 617 PIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
P+++AA E+ ++ L+ H + V A K + A D+
Sbjct: 104 PLYLAAYWGHLEIVEVLLK-HGADVNAQDKFGKTAFDI 140
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N + G TPL +A + GH+E+V +L A V+ D G + L+LAA G+L++ + L
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L H A +N++ + G+TA ++ G DL L
Sbjct: 121 LKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + A G T H+AA G + ++E L+
Sbjct: 1 DLGKKLLEAARAGQDDEVR--ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLL--- 55
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
R+G TPL LAA GH +V VL+K GA ++ TG T ++LAA GH +
Sbjct: 56 RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLE 115
Query: 272 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 304
++E + A K G TA ++ G D
Sbjct: 116 IVEVLLKHGADVNAQDKFGKTAFDISIDIGNED 148
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM-RSSKALNVYSKKL 289
AA G + VR+L+ GA + G T +H+AA GH +++E + R+ +N
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN- 67
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
G T LH+AA G + V LL + D +G+TPL+LAAY G+
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGADVNAKDA-------------TGITPLYLAAYWGHL 114
Query: 350 NVVRLLLNSAGVQVDAQTQ 368
+V +LL G V+AQ +
Sbjct: 115 EIVEVLLKH-GADVNAQDK 132
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 70/122 (57%), Gaps = 4/122 (3%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
+TPLH+AA G L++ ++LL GA ++A D G P+H+AA E+ ++ L+ + + V
Sbjct: 36 RTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK-YGADV 94
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
A G T ++AA G + ++E L+K ++A+++ + T ++ + G+ ++
Sbjct: 95 NAKDATGITPLYLAAYWGHLEIVEVLLK--HGADVNAQDKFGK-TAFDISIDIGNEDLAE 151
Query: 242 VL 243
+L
Sbjct: 152 IL 153
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 24/228 (10%)
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
K++PLH AAEAG + +C +L+ GA+ID + + P+ AA+NN E + ++A +L
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA-GAL 69
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 240
V +G+TC H+AA +G V++ L+ + V + TP+ A E H ++V
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD--GGWTPMIWATEYKHVDLV 127
Query: 241 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK----ALNVYSKKLGVTALHV 296
++L+ G+ + +H AA +G + E + ++K A+N++ G + LH+
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH----GDSPLHI 183
Query: 297 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 344
AA + D V LS L ++ G TPL A+
Sbjct: 184 AARENRYDCVVLFLSRDSDVT-------------LKNKEGETPLQCAS 218
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 12/242 (4%)
Query: 44 HARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLC 103
H + Q RS LH AAE G++ +C L+ A I++ S RT L AA N + +
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 104 RFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA-SIDATDDQGQKPIHVAA 162
++L+ A++D T LHLAA+ G +V + LL G ++ DD G P+ A
Sbjct: 61 KYLI-KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 163 QNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM--KFDRSGVISARN 220
+ ++ ++ L + S + + N C H AA G V + E L+ K D V
Sbjct: 120 EYKHVDLVKLLL-SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV----- 173
Query: 221 RVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK 280
+ +PL +AA + V + + + T +NK G T + A+ N +QV ++ SK
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN--SQVWSALQMSK 231
Query: 281 AL 282
AL
Sbjct: 232 AL 233
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 118/259 (45%), Gaps = 48/259 (18%)
Query: 369 ENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 428
+N +PLH A GHV + +L+ A+ + + ++ +T L AA + HL+ V+ L+ G
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 429 AEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAAD 488
A ++ D G+ +H AA+ GH ++ LL G+ +DV
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ-MDVNCQ------------------- 107
Query: 489 LLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGR 548
D G T + A + H+ +V++LL +G++IN D N ++
Sbjct: 108 -----DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD-------------NEEN---- 145
Query: 549 TALHLAAMNGYADLCRFLVHDHAAVIDI--LTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
LH AA +G D+ L+ AA D+ + + +PLH+AA + L L +
Sbjct: 146 ICLHWAAFSGCVDIAEILL---AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD 202
Query: 607 IDATDDQGQKPIHVAAQNN 625
+ + +G+ P+ A+ N+
Sbjct: 203 VTLKNKEGETPLQCASLNS 221
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 107/210 (50%), Gaps = 4/210 (1%)
Query: 23 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINS 82
+PL A GH+++ + ++ A +D ++ R+ L AAE+ +L+ L+ A ++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 83 KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 142
K G T LHLAA G+ ++ ++L+ + ++ TP+ A E + + KLLL
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 143 LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVG 202
G+ I+ D++ +H AA + ++A+I L A L A G++ HIAA +
Sbjct: 133 KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYD 191
Query: 203 VIEELMKFDRSGVISARNRVTEATPLQLAA 232
+ ++ R ++ +N+ E TPLQ A+
Sbjct: 192 CV--VLFLSRDSDVTLKNKEGE-TPLQCAS 218
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 27/216 (12%)
Query: 442 IHTAARYGHVGIINTLLQKGEKVDVTTNNLAC--------GHVTVVGLLLSRAADLLQSA 493
+H AA GHV I + L+Q G +D + + H+ V L+ +A L+
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-KAGALVDPK 73
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
D G TCLH+AA GH ++V+ LL G + +N + G T +
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNG----------------QMDVNCQDDGGWTPMIW 117
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 613
A + DL + L+ + I+I + LH AA +G + + ++LL + A +
Sbjct: 118 ATEYKHVDLVKLLL-SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH 176
Query: 614 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKE 649
G P+H+AA+ N + +FL + S VT KE E
Sbjct: 177 GDSPLHIAARENRYDCVVLFL-SRDSDVTLKNKEGE 211
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 21/224 (9%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGA---SCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 282
+PL AAE GH ++ +LV+AGA +C+++ +T AA+N H + ++ + + AL
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLME---AAENNHLEAVKYLIKAGAL 69
Query: 283 NVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 342
G T LH+AA G + V+ LLS+ V + G TP+
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ------------DDGGWTPMIW 117
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
A + ++V+LLL S G ++ + E LH A F G V + +LL+ D L + +
Sbjct: 118 ATEYKHVDLVKLLL-SKGSDINIRDNEENI-CLHWAAFSGCVDIAEILLAAKCD-LHAVN 174
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAA 446
+G + LHIAA V + L + +++ +K G + A+
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 104/239 (43%), Gaps = 32/239 (13%)
Query: 292 TALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENV 351
+ LH AA G D L+ GA+ + SE TPL AA + +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQ-----------AGANI--DTCSEDQRTPLMEAAENNHLEA 59
Query: 352 VRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHI 411
V+ L+ AG VD + E G LHLA GH VV LLS + D G T +
Sbjct: 60 VKYLI-KAGALVDPKDAE-GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW 117
Query: 412 AATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNL 471
A + H+ +V++LL +G++IN D +H AA G V I LL K D+ N+
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL--AAKCDLHAVNI 175
Query: 472 ACG---HVT-------VVGLLLSRAADLLQSADKNGKTCLHIAATHGH----LQMVEVL 516
H+ V L LSR +D+ +K G+T L A+ + LQM + L
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLK-NKEGETPLQCASLNSQVWSALQMSKAL 233
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 548 RTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 607
R+ LH AA G+ D+C LV A ID + ++TPL AAE L+ K L+ GA +
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 608 DATDDQGQKPIHVAAQNNFPEVAQIFL 634
D D +G +H+AA+ EV Q L
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLL 97
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNN-HARVDVFDQEGRSALHLAAEHGYLKVCDA 72
++ + + G T L +A +GH E+V +L+N V+ D G + + A E+ ++ +
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 73 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDI--LTLRKQTPLHLAAE 130
LL+ + IN + LH AA +G D+ L+ AA D+ + + +PLH+AA
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL---AAKCDLHAVNIHGDSPLHIAAR 186
Query: 131 AGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN 165
+ L L + + + +G+ P+ A+ N+
Sbjct: 187 ENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS 221
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N Q GWTP++ A H++LV +L+ + +++ D E LH AA G + + + L
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
Query: 74 LTHKAFINSKSRVGRTALHLAAM-NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 132
L K +++ + G + LH+AA N Y + FL D + + + +TPL A+
Sbjct: 164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD--SDVTLKNKEGETPLQCASLNS 221
Query: 133 Q----LQVCKLLLD 142
Q LQ+ K L D
Sbjct: 222 QVWSALQMSKALQD 235
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 581 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 636
K++PLH AAEAG + +C +L+ GA+ID + + P+ AA+NN E + ++A
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 79.7 bits (195), Expect = 8e-15, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N + S TPL++AC G ++ ++ N +++ D EG +AL A ++ L + + LL
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
+ + +N+K G+T L + + GY+++ FL+ +H A ++ L +TPL +A++ G+
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL-EHGANVNDRNLEGETPLIVASKYGRS 147
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
++ K LL+LGA I A D G A EV +IF
Sbjct: 148 EIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 18/146 (12%)
Query: 488 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVG 547
D L+ D G T L A + L + E LL +G+ +N +K G
Sbjct: 59 DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-----------------TKDFSG 101
Query: 548 RTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 607
+T L + + GY+++ FL+ +H A ++ L +TPL +A++ G+ ++ K LL+LGA I
Sbjct: 102 KTPLMWSIIFGYSEMSYFLL-EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI 160
Query: 608 DATDDQGQKPIHVAAQNNFPEVAQIF 633
A D G A EV +IF
Sbjct: 161 SARDLTGLTAEASARIFGRQEVIKIF 186
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
D +T L +A G ++ L+ ++ D G+ ++ A + +GI LL KG
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91
Query: 462 EKVDVTTN--------NLACGHVTVVGLLLSRAADLLQSADKN--GKTCLHIAATHGHLQ 511
V+ ++ G+ + LL A++ D+N G+T L +A+ +G +
Sbjct: 92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV---NDRNLEGETPLIVASKYGRSE 148
Query: 512 MVEVLLGQGAEINATD 527
+V+ LL GA+I+A D
Sbjct: 149 IVKKLLELGADISARD 164
Score = 37.4 bits (85), Expect = 0.044, Method: Composition-based stats.
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 29/203 (14%)
Query: 266 QNGHNQVLEEMRSSKALNV-------YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVK 318
+NG +++E+++ K++N Y T L VA G + + +L+ +
Sbjct: 6 KNG--EIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLED 63
Query: 319 SDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLA 378
D G T L A + + LL S G V+ + +G PL +
Sbjct: 64 KDI-------------EGSTALIWAVKNNRLGIAEKLL-SKGSNVNTK-DFSGKTPLMWS 108
Query: 379 CFGGHVTVVGLLLSRAADLLQSADKN--GKTCLHIAATHGHLQMVEVLLGQGAEINATDK 436
G+ + LL A++ D+N G+T L +A+ +G ++V+ LL GA+I+A D
Sbjct: 109 IIFGYSEMSYFLLEHGANV---NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165
Query: 437 GGARSIHTAARYGHVGIINTLLQ 459
G + +A +G +I +
Sbjct: 166 TGLTAEASARIFGRQEVIKIFTE 188
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 38/194 (19%)
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
N + RT L +A M G + LV + + D + T L A + +L + + L
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLED-KDIEGSTALIWAVKNNRLGIAEKL 87
Query: 141 LDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS 200
L G++++ D G+ P+ + + E++ FL H + V +G T
Sbjct: 88 LSKGSNVNTKDFSGKTPLMWSIIFGYSEMS-YFLLEHGANVNDRNLEGET---------- 136
Query: 201 VGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTA 260
PL +A++ G + +V+ L++ GA + + TG TA
Sbjct: 137 --------------------------PLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170
Query: 261 VHLAAQNGHNQVLE 274
A G +V++
Sbjct: 171 EASARIFGRQEVIK 184
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 187 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 246
+G+T A +G+ E+L+ + ++ ++ + TPL + G++ + L++
Sbjct: 67 EGSTALIWAVKNNRLGIAEKLLS--KGSNVNTKD-FSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 247 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKL-GVTALHVAAYFGQADT 305
GA+ D N G T + +A++ G +++++++ A ++ ++ L G+TA A FG+ +
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA-DISARDLTGLTAEASARIFGRQEV 182
Query: 306 VR 307
++
Sbjct: 183 IK 184
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 48/93 (51%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N + G TPL+ + G+ E+ +L + A V+ + EG + L +A+++G ++ L
Sbjct: 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L A I+++ G TA A + G ++ +
Sbjct: 154 LELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 512 MVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHA 571
MV +LG NA DK L+ + + K G TAL A N + L+
Sbjct: 40 MVACMLGME---NAIDK----LVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL-SKG 91
Query: 572 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQ 631
+ ++ +TPL + G ++ LL+ GA+++ + +G+ P+ VA++ E+ +
Sbjct: 92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVK 151
Query: 632 IFL 634
L
Sbjct: 152 KLL 154
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 68/102 (66%), Gaps = 3/102 (2%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G TPLH AA +G+ V+ LL S G V+A++++ G PLHLA GH +V LLL
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLL 62
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINA 433
++ AD+ + K+G T H+A +GH ++V++L +GA++NA
Sbjct: 63 AKGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 368 QENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQ 427
++G PLH A GH V LLS+ AD+ + K+G T LH+AA +GH ++V++LL +
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 428 GAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTT 468
GA++NA K G H A + GH I+ L KG V+ +
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 26/123 (21%)
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGE 462
K+G T LH AA +GH + V+ LL +GA++NA K G +H AA+ GH I+ LL KG
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 463 KVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAE 522
V+ + K+G T H+A +GH ++V++L +GA+
Sbjct: 67 DVNARS--------------------------KDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Query: 523 INA 525
+NA
Sbjct: 101 VNA 103
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 18/115 (15%)
Query: 495 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLA 554
K+G T LH AA +GH + V+ LL +GA++NA +S+ G T LHLA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-----------------RSKDGNTPLHLA 49
Query: 555 AMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 609
A NG+A++ + L+ A ++ + TP HLA + G ++ KLL GA ++A
Sbjct: 50 AKNGHAEIVKLLLAK-GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 52 QEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHA 111
++G + LH AA++G+ + LL+ A +N++S+ G T LHLAA NG+A++ + L+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-G 65
Query: 112 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 149
A ++ + TP HLA + G ++ KLL GA ++A
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 15/114 (13%)
Query: 284 VYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA 343
++ K G T LH AA G A+ V++LLS GA S+ G TPLHLA
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLS-----------KGADVNAR--SKDGNTPLHLA 49
Query: 344 AYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADL 397
A +G+ +V+LLL + G V+A++++ G P HLA GH +V LL ++ AD+
Sbjct: 50 AKNGHAEIVKLLL-AKGADVNARSKD-GNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 185 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLV 244
+KDGNT H AA G +++L+ + ++AR++ TPL LAA+ GHA +V++L+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLL--SKGADVNARSKDGN-TPLHLAAKNGHAEIVKLLL 62
Query: 245 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVT 292
GA +K G T HLA +NGH++++ ++ +K +V ++ G +
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIV-KLLDAKGADVNARSWGSS 109
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
S+ G T LH AA NG+A+ + L+ A ++ + TPLHLAA+ G ++ KLLL
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
GA ++A G P H+A +N E+ ++
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 544 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 603
S+ G T LH AA NG+A+ + L+ A ++ + TPLHLAA+ G ++ KLLL
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 604 GASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
GA ++A G P H+A +N E+ ++
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G TPL A GH E V +L+ A V+ ++G + LHLAA++G+ ++ LL A +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFL 106
N++S+ G T HLA NG+ ++ + L
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
TPLH AA+ G + K LL GA ++A G P+H+AA+N E+ ++ L A + V
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AKGADV 68
Query: 182 TATTKDGNTCAHIAAMQG 199
A +KDGNT H+A G
Sbjct: 69 NARSKDGNTPEHLAKKNG 86
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 18/93 (19%)
Query: 474 GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDAL 533
GH V LLS+ AD+ + K+G T LH+AA +GH ++V++LL +GA++NA
Sbjct: 20 GHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-------- 70
Query: 534 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
+S+ G T HLA NG+ ++ + L
Sbjct: 71 ---------RSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 16/114 (14%)
Query: 255 KTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLSHV 313
K G T +H AA+NGH + ++++ S A +N SK G T LH+AA G A+ V+ LL+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLA-- 63
Query: 314 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 367
GA S+ G TP HLA +G+ +V+ LL++ G V+A++
Sbjct: 64 ---------KGADVNAR--SKDGNTPEHLAKKNGHHEIVK-LLDAKGADVNARS 105
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNV 284
TPL AA+ GHA V+ L+ GA +K G T +HLAA+NGH ++++ + + A +N
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 285 YSKKLGVTALHVAAYFGQADTVR 307
SK G T H+A G + V+
Sbjct: 71 RSKD-GNTPEHLAKKNGHHEIVK 92
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 153 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDR 212
G P+H AA+N E + L + + V A +KDGNT H+AA G +++ L+ +
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA--K 64
Query: 213 SGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCT 251
++AR++ TP LA + GH +V++L GA
Sbjct: 65 GADVNARSKDGN-TPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 582 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 641
TPLH AA+ G + K LL GA ++A G P+H+AA+N E+ ++ L A + V
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AKGADV 68
Query: 642 TATTKEKERAKDLIAAGKHCE 662
A +K+ + L H E
Sbjct: 69 NARSKDGNTPEHLAKKNGHHE 89
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N ++ G TPL +A GH E+V +L A V+ ++G + HLA ++G+ ++ L
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Query: 74 LTHKAFINSKS 84
A +N++S
Sbjct: 95 DAKGADVNARS 105
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 44/220 (20%)
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
D++ +T LH A + GH ++VE LL G +N D G +H AA G I+ LL KG
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 462 EKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
+V+ + ++NG T LH AA+ ++ +LL GA
Sbjct: 97 AQVN--------------------------AVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 522 EINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRK 581
+A D TA+H AA G + L++ + A +I
Sbjct: 131 NPDAKD-----------------HYEATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEG 172
Query: 582 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 621
TPLHLA + +++ KLL+ GASI + + + P+ VA
Sbjct: 173 NTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 1/148 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N + GW+PL IA + G E+V +L A+V+ +Q G + LH AA ++ L
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L A ++K TA+H AA G + L++ + A +I TPLHLA + +
Sbjct: 126 LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEER 184
Query: 134 LQVCKLLLDLGASIDATDDQGQKPIHVA 161
++ KLL+ GASI + + + P+ VA
Sbjct: 185 VEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 109/229 (47%), Gaps = 10/229 (4%)
Query: 21 GWTPLLIACNRGHM----ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTH 76
G L+ CN + EL ++L + + DQ+ R+ALH A G+ ++ + LL
Sbjct: 3 GCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62
Query: 77 KAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQV 136
+N K G + LH+AA G ++ + L+ A ++ + TPLH AA + ++
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEI 121
Query: 137 CKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAA 196
+LL+ GA+ DA D +H AA ++ I L S T +GNT H+A
Sbjct: 122 AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT-EGNTPLHLAC 180
Query: 197 MQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 245
+ V E + + I N+ E TPLQ+ A+GG +++ +V+
Sbjct: 181 DEERVE--EAKLLVSQGASIYIENK-EEKTPLQV-AKGGLGLILKRMVE 225
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 9/194 (4%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ +T++ W AC+ GH E+V +L V+ D G S LH+AA G ++ ALL
Sbjct: 39 DSRTALHW-----ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
A +N+ ++ G T LH AA ++ L+ + A D + T +H AA G L
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYEATAMHRAAAKGNL 152
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI 194
++ +LL AS + D +G P+H+A E A++ + S+ K+ T +
Sbjct: 153 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI-ENKEEKTPLQV 211
Query: 195 AAMQGSVGVIEELM 208
A +G +G+I + M
Sbjct: 212 A--KGGLGLILKRM 223
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 96/230 (41%), Gaps = 44/230 (19%)
Query: 419 QMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTV 478
++ E +L + TD+ ++H A GH I+ LLQ G V+
Sbjct: 21 ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN------------- 67
Query: 479 VGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKA 538
D G + LHIAA+ G ++V+ LLG+GA++NA +
Sbjct: 68 -------------DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN----------- 103
Query: 539 FINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCK 598
+ G T LH AA ++ L+ + A D + T +H AA G L++
Sbjct: 104 ------QNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYEATAMHRAAAKGNLKMIH 156
Query: 599 LLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEK 648
+LL AS + D +G P+H+A E A++ + S+ +EK
Sbjct: 157 ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEK 206
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 527 DKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLH 586
+++ +++L K+ + RTALH A G+ ++ FL+ V D +PLH
Sbjct: 20 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLH 78
Query: 587 LAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
+AA AG+ ++ K LL GA ++A + G P+H AA N E+A + L
Sbjct: 79 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 196 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 255
A G + ++E + D+S ++ R T L A GH +V L++ G D++
Sbjct: 14 AYSGKLEELKESILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 256 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 315
G++ +H+AA G +++++ + A + G T LH AA + + LL G
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE---G 128
Query: 316 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPL 375
D T +H AA GN ++ +LL + Q E G PL
Sbjct: 129 GANPDAK----------DHYEATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTE-GNTPL 176
Query: 376 HLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIA 412
HLAC V LL+S+ A + +K KT L +A
Sbjct: 177 HLACDEERVEEAKLLVSQGASIYIE-NKEEKTPLQVA 212
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 44/220 (20%)
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
D++ +T LH A + GH ++VE LL G +N D G +H AA G I+ LL KG
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 462 EKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
+V+ + ++NG T LH AA+ ++ +LL GA
Sbjct: 98 AQVN--------------------------AVNQNGCTPLHYAASKNRHEIAVMLLEGGA 131
Query: 522 EINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRK 581
+A D TA+H AA G + L++ + A +I
Sbjct: 132 NPDAKD-----------------HYEATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEG 173
Query: 582 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 621
TPLHLA + +++ KLL+ GASI + + + P+ VA
Sbjct: 174 NTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 1/148 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N + GW+PL IA + G E+V +L A+V+ +Q G + LH AA ++ L
Sbjct: 67 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 126
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L A ++K TA+H AA G + L++ + A +I TPLHLA + +
Sbjct: 127 LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEER 185
Query: 134 LQVCKLLLDLGASIDATDDQGQKPIHVA 161
++ KLL+ GASI + + + P+ VA
Sbjct: 186 VEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 10/232 (4%)
Query: 19 SIGWTPLLIACNRGHM----ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
S G L+ CN + EL ++L + + DQ+ R+ALH A G+ ++ + LL
Sbjct: 2 SEGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 61
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
+N K G + LH+AA G ++ + L+ A ++ + TPLH AA +
Sbjct: 62 QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRH 120
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI 194
++ +LL+ GA+ DA D +H AA ++ I L S T +GNT H+
Sbjct: 121 EIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT-EGNTPLHL 179
Query: 195 AAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 246
A + V E + + I N+ E TPLQ+ A+GG +++ +V+
Sbjct: 180 ACDEERVE--EAKLLVSQGASIYIENK-EEKTPLQV-AKGGLGLILKRMVEG 227
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 9/194 (4%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ +T++ W AC+ GH E+V +L V+ D G S LH+AA G ++ ALL
Sbjct: 40 DSRTALHW-----ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
A +N+ ++ G T LH AA ++ L+ + A D + T +H AA G L
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYEATAMHRAAAKGNL 153
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI 194
++ +LL AS + D +G P+H+A E A++ + S+ K+ T +
Sbjct: 154 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI-ENKEEKTPLQV 212
Query: 195 AAMQGSVGVIEELM 208
A +G +G+I + M
Sbjct: 213 A--KGGLGLILKRM 224
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 96/230 (41%), Gaps = 44/230 (19%)
Query: 419 QMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTV 478
++ E +L + TD+ ++H A GH I+ LLQ G V+
Sbjct: 22 ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN------------- 68
Query: 479 VGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKA 538
D G + LHIAA+ G ++V+ LLG+GA++NA +
Sbjct: 69 -------------DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN----------- 104
Query: 539 FINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCK 598
+ G T LH AA ++ L+ + A D + T +H AA G L++
Sbjct: 105 ------QNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYEATAMHRAAAKGNLKMIH 157
Query: 599 LLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEK 648
+LL AS + D +G P+H+A E A++ + S+ +EK
Sbjct: 158 ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEK 207
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 527 DKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLH 586
+++ +++L K+ + RTALH A G+ ++ FL+ V D +PLH
Sbjct: 21 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLH 79
Query: 587 LAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 636
+AA AG+ ++ K LL GA ++A + G P+H AA N E+A + L
Sbjct: 80 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 129
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 18/217 (8%)
Query: 196 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 255
A G + ++E + D+S ++ R T L A GH +V L++ G D++
Sbjct: 15 AYSGKLEELKESILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 72
Query: 256 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 315
G++ +H+AA G +++++ + A + G T LH AA + + LL
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG--- 129
Query: 316 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPL 375
++P + T +H AA GN ++ +LL + Q E G PL
Sbjct: 130 --GANPDAKDHYEA--------TAMHRAAAKGNLKMIHILLYYK-ASTNIQDTE-GNTPL 177
Query: 376 HLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIA 412
HLAC V LL+S+ A + +K KT L +A
Sbjct: 178 HLACDEERVEEAKLLVSQGASIYIE-NKEEKTPLQVA 213
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 128/282 (45%), Gaps = 40/282 (14%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
AC G V LL R AD+ A+ +G T LH A ++ MV+ L+ GA IN D
Sbjct: 47 ACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AA G++ I L+ +G HV V + G
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQG------------AHVGAV--------------NSEG 139
Query: 498 KTCLHIAATHGHLQMVEVLLG-QGAEINATDKVCDALLTHKA--FINS-------KSRVG 547
T L IA ++++ + QG +I A K + ++ A ++NS ++ G
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199
Query: 548 RTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 607
TALH+AA GY ++ + L+ V +I TPLH AA G+ + C++L++ +
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 608 DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKE 649
+A + GQ VA ++ + + L+ +L+ + +EK+
Sbjct: 259 EAVNKVGQTAFDVADEDILGYLEE--LQKKQNLLHSEKREKK 298
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 115/280 (41%), Gaps = 39/280 (13%)
Query: 320 DPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLAC 379
+PP ++ + G L + E V+RLL A + +G LH AC
Sbjct: 25 EPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINY---ANVDGLTALHQAC 81
Query: 380 FGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGA 439
+V +V L+ A++ Q D G LH AA+ G+L + E L+ QGA + A + G
Sbjct: 82 IDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD 140
Query: 440 RSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSAD----- 494
+ A ++ + + + VD+ ++L A L S
Sbjct: 141 TPLDIAEEEAMEELLQNEVNR-QGVDIEA-----ARKEEERIMLRDARQWLNSGHINDVR 194
Query: 495 --KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALH 552
K+G T LH+AA G+ +++++ L+ + +N K G T LH
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKL-----------------LIQARYDVNIKDYDGWTPLH 237
Query: 553 LAAMNGYADLCRFLVHDHAAVIDILTLRK--QTPLHLAAE 590
AA G + CR LV + + D+ + K QT +A E
Sbjct: 238 AAAHWGKEEACRILVEN---LCDMEAVNKVGQTAFDVADE 274
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 32/224 (14%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N G T L AC ++++V ++ N A ++ D EG LH AA GYL + + L
Sbjct: 66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ----------- 122
++ A + + + G T L +A +L + V+ +DI RK+
Sbjct: 126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG--VDIEAARKEEERIMLRDARQ 183
Query: 123 -----------------TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN 165
T LH+AA G +V KLL+ ++ D G P+H AA
Sbjct: 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG 243
Query: 166 FPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK 209
E +I + + A K G T +A + +G +EEL K
Sbjct: 244 KEEACRILVENLCDM-EAVNKVGQTAFDVAD-EDILGYLEELQK 285
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 118/272 (43%), Gaps = 29/272 (10%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
L AC+ G E V +L A ++ + +G +ALH A + + L+ + A IN
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL- 143
G LH AA GY D+ +L+ A + + TPL +A E ++ + ++
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLIS-QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 203
G I+A + ++ + + Q H + V K G T H+AA +G V
Sbjct: 163 GVDIEAARKEEERIM-------LRDARQWLNSGHINDVR-HAKSGGTALHVAAAKGYTEV 214
Query: 204 IEELMKFDRSGVISARNRVTEA-----TPLQLAAEGGHANVVRVLVKAGASCTDENKTGF 258
++ L I AR V TPL AA G R+LV+ NK G
Sbjct: 215 LKLL--------IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266
Query: 259 TAVHLAAQN--GHNQVLEEMRSSKALNVYSKK 288
TA +A ++ G+ LEE++ + L ++S+K
Sbjct: 267 TAFDVADEDILGY---LEELQKKQNL-LHSEK 294
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 64/254 (25%)
Query: 109 DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPE 168
+ A I+ + T LH A + + K L++ GA+I+ D++G P+H AA + +
Sbjct: 61 ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD 120
Query: 169 VAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATP 227
+A+ +L + + V A +G+T IA + +++ + +R GV I A + E
Sbjct: 121 IAE-YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN--EVNRQGVDIEAARKEEERIM 177
Query: 228 LQLAAE---GGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 284
L+ A + GH N VR
Sbjct: 178 LRDARQWLNSGHINDVR------------------------------------------- 194
Query: 285 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 344
K G TALHVAA G + ++ L+ A + + G TPLH AA
Sbjct: 195 -HAKSGGTALHVAAAKGYTEVLKLLIQ-------------ARYDVNIKDYDGWTPLHAAA 240
Query: 345 YSGNENVVRLLLNS 358
+ G E R+L+ +
Sbjct: 241 HWGKEEACRILVEN 254
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 75/191 (39%), Gaps = 41/191 (21%)
Query: 285 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 344
Y+ G+TALH A D V+ L+ + + D G PLH AA
Sbjct: 68 YANVDGLTALHQACIDDNVDMVKFLVENGANINQPD-------------NEGWIPLHAAA 114
Query: 345 YSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFG-------GHVTVVG--------- 388
G ++ L+ S G V A E G PL +A V G
Sbjct: 115 SCGYLDIAEYLI-SQGAHVGAVNSE-GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE 172
Query: 389 ---LLLSRAADLLQSAD-------KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGG 438
++L A L S K+G T LH+AA G+ +++++L+ ++N D G
Sbjct: 173 EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232
Query: 439 ARSIHTAARYG 449
+H AA +G
Sbjct: 233 WTPLHAAAHWG 243
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 569 DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPE 628
+ A I+ + T LH A + + K L++ GA+I+ D++G P+H AA + +
Sbjct: 61 ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD 120
Query: 629 VAQIFLRAHPSLVTATTKEKERAKDL 654
+A+ +L + + V A E + D+
Sbjct: 121 IAE-YLISQGAHVGAVNSEGDTPLDI 145
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 75/143 (52%), Gaps = 4/143 (2%)
Query: 325 ASFLG-ELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGH 383
AS LG + S+ G +PLH+AA G +++ LLL G A+ + PLHLAC GH
Sbjct: 74 ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKH-GANAGARNADQAV-PLHLACQQGH 131
Query: 384 VTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIH 443
VV LL A D +G T L A + GH ++V +LL GA INA++ G ++H
Sbjct: 132 FQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALH 190
Query: 444 TAARYGHVGIINTLLQKGEKVDV 466
A HV ++ LL G V V
Sbjct: 191 EAVIEKHVFVVELLLLHGASVQV 213
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 139
+N S+ G + LH+AA++G ADL L+ H A + PLHLA + G QV K
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLL-KHGANAGARNADQAVPLHLACQQGHFQVVKC 137
Query: 140 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 199
LLD A + D G P+ A E+ + L+ H + + A+ GNT H A ++
Sbjct: 138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEK 196
Query: 200 SVGVIEELMKFDRS-GVISARNR 221
V V+E L+ S V++ R R
Sbjct: 197 HVFVVELLLLHGASVQVLNKRQR 219
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 32/170 (18%)
Query: 360 GVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADL-LQSADKNGKTCLHIAATHGHL 418
GV V T ++G +PLH+A G ++ LLL A+ ++AD+ LH+A GH
Sbjct: 78 GVNV---TSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQ--AVPLHLACQQGHF 132
Query: 419 QMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTV 478
Q+V+ LL A+ N D G + A GH ++ LLQ G ++ + N
Sbjct: 133 QVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNN--------- 183
Query: 479 VGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDK 528
G T LH A H+ +VE+LL GA + +K
Sbjct: 184 -----------------KGNTALHEAVIEKHVFVVELLLLHGASVQVLNK 216
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 7/176 (3%)
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 203
G ++ T G P+HVAA + ++ + L+ H + A D H+A QG V
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQV 134
Query: 204 IEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHL 263
++ L+ S + ++ TPL A GGH +V +L++ GAS N G TA+H
Sbjct: 135 VKCLLD---SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHE 191
Query: 264 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKS 319
A H V+E + A K TA+ A Q + ELL VP V S
Sbjct: 192 AVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAE---QNSKIMELLQVVPSCVAS 244
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 24 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSK 83
PL +AC +GH ++V +L+++A+ + D G + L A G+ ++ LL H A IN+
Sbjct: 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINAS 181
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ-LQVCKLLLD 142
+ G TALH A + + + L+ H A + +L R++T + A + + +++ +++
Sbjct: 182 NNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPS 240
Query: 143 LGASIDATDDQGQK 156
AS+D + +K
Sbjct: 241 CVASLDDVAETDRK 254
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 1/152 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N + G +PL +A G +L+ +L + A + + LHLA + G+ +V L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L A N K G T L A G+ +L L+ H A I+ + T LH A
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEKH 197
Query: 134 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNN 165
+ V +LLL GAS+ + + + + A QN+
Sbjct: 198 VFVVELLLLHGASVQVLNKRQRTAVDCAEQNS 229
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 540 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 599
+N S+ G + LH+AA++G ADL L+ H A + PLHLA + G QV K
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLL-KHGANAGARNADQAVPLHLACQQGHFQVVKC 137
Query: 600 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTK 646
LLD A + D G P+ A E+ + L+ S+ + K
Sbjct: 138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK 184
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 495 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLA 554
++G + LH+AA HG ++ +LL GA A N+ V LHLA
Sbjct: 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGAR--------------NADQAV---PLHLA 126
Query: 555 AMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQG 614
G+ + + L+ D A + L TPL A G ++ LLL GASI+A++++G
Sbjct: 127 CQQGHFQVVKCLL-DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG 185
Query: 615 QKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKD 653
+H A V ++ L H + V K + A D
Sbjct: 186 NTALHEAVIEKHVFVVELLL-LHGASVQVLNKRQRTAVD 223
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 75/183 (40%), Gaps = 14/183 (7%)
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
T + D C + + L K SG+ ++PL +AA G A+++
Sbjct: 44 TVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIP 103
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFG 301
+L+K GA+ N +HLA Q GH QV++ + S A G T L A G
Sbjct: 104 LLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG 163
Query: 302 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR-LLLNSAG 360
+ V LL H GAS + G T LH A + VV LLL+ A
Sbjct: 164 HHELVALLLQH-----------GASI--NASNNKGNTALHEAVIEKHVFVVELLLLHGAS 210
Query: 361 VQV 363
VQV
Sbjct: 211 VQV 213
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 72/162 (44%), Gaps = 44/162 (27%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L AA G V +L+ GA++NA D+ G +H AA Y H+ I+ LL+ G V
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+ D +G T LH+AA GHL++VEVLL GA++N
Sbjct: 74 --------------------------NAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVN 107
Query: 525 ATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
A DK G+TA ++ NG DL L
Sbjct: 108 AQDK-----------------FGKTAFDISIDNGNEDLAEIL 132
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 27/139 (19%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + D+ G T LH+AA + HL++VEVLL GA++NA D
Sbjct: 21 AARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G+ +H AA +GH+ I+ LL+ G V + DK G
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADV--------------------------NAQDKFG 113
Query: 498 KTCLHIAATHGHLQMVEVL 516
KT I+ +G+ + E+L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N G TPL +A + H+E+V +L + A V+ D +G + LHLAA G+L++ + L
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVL 99
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L H A +N++ + G+TA ++ NG DL L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 37/147 (25%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++A D +G P+H+AA + E+ ++ L+ H + V A D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-HGADVNAHDND 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G +TPL LAA GH +V VL+K G
Sbjct: 80 G------------------------------------STPLHLAALFGHLEIVEVLLKHG 103
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ NG+ + E
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAE 130
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 64/128 (50%), Gaps = 16/128 (12%)
Query: 297 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 356
AA GQ D VR L+++ +D G TPLHLAA + +V +LL
Sbjct: 21 AARAGQDDEVRILMANGADVNAND-------------RKGNTPLHLAADYDHLEIVEVLL 67
Query: 357 NSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHG 416
G V+A + G PLHLA GH+ +V +LL AD + + DK GKT I+ +G
Sbjct: 68 KH-GADVNAHDND-GSTPLHLAALFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNG 124
Query: 417 HLQMVEVL 424
+ + E+L
Sbjct: 125 NEDLAEIL 132
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
S +G+ L AA G D R L+ + A ++ + TPLHLAA+ L++ ++LL
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMA-NGADVNANDRKGNTPLHLAADYDHLEIVEVLLKH 69
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 203
GA ++A D+ G P+H+AA E+ ++ L+ H + V A K G T I+ G+ +
Sbjct: 70 GADVNAHDNDGSTPLHLAALFGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 204 IEELMKFD 211
E L K +
Sbjct: 129 AEILQKLN 136
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D++G + LHLAA++ +L++ + LL H A +N+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
G T LHLAA+ G+ ++ L+ H A ++ +T ++ + G + ++L
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NA D R G T LHLAA
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAND-----------------RKGNTPLHLAAD 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
+ ++ L+ H A ++ TPLHLAA G L++ ++LL GA ++A D G+
Sbjct: 57 YDHLEIVEVLLK-HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKT 115
Query: 617 PIHVAAQNNFPEVAQIFLR 635
++ N ++A+I +
Sbjct: 116 AFDISIDNGNEDLAEILQK 134
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 544 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 603
S +G+ L AA G D R L+ + A ++ + TPLHLAA+ L++ ++LL
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMA-NGADVNANDRKGNTPLHLAADYDHLEIVEVLLKH 69
Query: 604 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
GA ++A D+ G P+H+AA E+ ++ L+ H + V A K + A D+
Sbjct: 70 GADVNAHDNDGSTPLHLAALFGHLEIVEVLLK-HGADVNAQDKFGKTAFDI 119
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM-RSSKALNVYSKKL 289
AA G + VR+L+ GA ++ G T +HLAA H +++E + + +N +
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND- 79
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
G T LH+AA FG + V LL H D + G T ++ +GNE
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQD-------------KFGKTAFDISIDNGNE 126
Query: 350 NVVRLL 355
++ +L
Sbjct: 127 DLAEIL 132
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 216 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEE 275
++A +R TPL LAA+ H +V VL+K GA + G T +HLAA GH +++E
Sbjct: 40 VNANDRKGN-TPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEV 98
Query: 276 MRSSKALNVYSKKLGVTALHVAAYFGQAD 304
+ A K G TA ++ G D
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIDNGNED 127
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 97/225 (43%), Gaps = 44/225 (19%)
Query: 397 LLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINT 456
L D++ +T LH A + GH ++VE LL G +N D G +H AA G I+
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKA 91
Query: 457 LLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 516
LL KG HV V ++NG T LH AA+ ++ +L
Sbjct: 92 LLVKG------------AHVNAV--------------NQNGCTPLHYAASKNRHEIAVML 125
Query: 517 LGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDI 576
L GA +A D DA TA+H AA G + L+ + A +I
Sbjct: 126 LEGGANPDAKDHY-DA----------------TAMHRAAAKGNLKMVHILLF-YKASTNI 167
Query: 577 LTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 621
TPLHLA + +++ K L+ GASI + + + P+ VA
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N + GW+PL IA + G E+V +L A V+ +Q G + LH AA ++ L
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L A ++K TA+H AA G + L+ + A +I TPLHLA + +
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEER 184
Query: 134 LQVCKLLLDLGASIDATDDQGQKPIHVA 161
++ K L+ GASI + + + P+ VA
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ +T++ W AC+ GH E+V +L V+ D G S LH+AA G ++ ALL
Sbjct: 39 DSRTALHW-----ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
A +N+ ++ G T LH AA ++ L+ + A D T +H AA G L
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI 194
++ +LL AS + D +G P+H+A E A+ FL + + K+ T +
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAK-FLVTQGASIYIENKEEKTPLQV 211
Query: 195 AAMQGSVGVI 204
A +G +G+I
Sbjct: 212 A--KGGLGLI 219
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 9/202 (4%)
Query: 35 ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLA 94
EL +L + + DQ+ R+ALH A G+ ++ + LL +N K G + LH+A
Sbjct: 21 ELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 80
Query: 95 AMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQG 154
A G ++ + L+ A ++ + TPLH AA + ++ +LL+ GA+ DA D
Sbjct: 81 ASAGRDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
Query: 155 QKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF--DR 212
+H AA ++ I L S T +GNT H+A + V E KF +
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDT-EGNTPLHLACDEERV----EEAKFLVTQ 194
Query: 213 SGVISARNRVTEATPLQLAAEG 234
I N+ E TPLQ+A G
Sbjct: 195 GASIYIENK-EEKTPLQVAKGG 215
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 489 LLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN----------------ATDKVCDA 532
L D++ +T LH A + GH ++VE LL G +N D++ A
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKA 91
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
LL A +N+ ++ G T LH AA ++ L+ + A D T +H AA G
Sbjct: 92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYDATAMHRAAAKG 150
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEK 648
L++ +LL AS + D +G P+H+A E A+ + S+ +EK
Sbjct: 151 NLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEK 206
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 115/272 (42%), Gaps = 55/272 (20%)
Query: 196 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 255
A G + ++E + D+S ++ R T L A GH +V L++ G D++
Sbjct: 14 AYSGKLDELKERILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 256 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 315
G++ +H+AA G ++++ K L V HV A
Sbjct: 72 AGWSPLHIAASAGRDEIV-------------KALLVKGAHVNAV---------------- 102
Query: 316 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPL 375
+++G TPLH AA S N + + ++L G DA+ + +
Sbjct: 103 -----------------NQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYDA-TAM 143
Query: 376 HLACFGGHVTVVGLLL-SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINAT 434
H A G++ +V +LL +A+ +Q D G T LH+A ++ + L+ QGA I
Sbjct: 144 HRAAAKGNLKMVHILLFYKASTNIQ--DTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201
Query: 435 DKGGARSIHTAARYGHVGIINTLLQKGEKVDV 466
+K + A G +G+I L +GE+ +
Sbjct: 202 NKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 527 DKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLH 586
D++ + +L K+ + RTALH A G+ ++ FL+ V D +PLH
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLH 78
Query: 587 LAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
+AA AG+ ++ K LL GA ++A + G P+H AA N E+A + L
Sbjct: 79 IAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 9 EISKAL-------NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLA 61
EI KAL N G TPL A ++ E+ +L A D D +A+H A
Sbjct: 87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA 146
Query: 62 AEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRK 121
A G LK+ LL +KA N + G T LHLA + +FLV A I I +
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQGASIYIENKEE 205
Query: 122 QTPLHLA 128
+TPL +A
Sbjct: 206 KTPLQVA 212
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 5/129 (3%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L A +G ++ VR+L+ + G V+A + G PLHLA GH+ +V +LL
Sbjct: 11 GSDLGKKLLE-ATRAGQDDEVRILM-ANGADVNAM-DDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AD + ++D G+T LH+AAT GHL++VEVLL GA++NA DK G + + G+
Sbjct: 68 KHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 452 GIINTLLQK 460
+ +LQK
Sbjct: 127 DLAE-ILQK 134
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 44/162 (27%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L A G V +L+ GA++NA D G +H AA+ GH+ I+ LL+ G V
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+ ++D G+T LH+AAT GHL++VEVLL GA++N
Sbjct: 74 N--------------------------ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 525 ATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
A DK G+TA ++ NG DL L
Sbjct: 108 AQDK-----------------FGKTAFDISIDNGNEDLAEIL 132
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N G TPL +A RGH+E+V +L + A V+ D GR+ LHLAA G+L++ + L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L + A +N++ + G+TA ++ NG DL L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 27/139 (19%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + D G T LH+AA GHL++VEVLL GA++NA+D
Sbjct: 21 ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSW 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AA GH+ I+ LL+ G V+ + DK G
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVN--------------------------AQDKFG 113
Query: 498 KTCLHIAATHGHLQMVEVL 516
KT I+ +G+ + E+L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 34/151 (22%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHLAA+ G+L++ + LL H A +N+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
GRT LHLAA G L++ ++LL+ G
Sbjct: 78 SWGRTPLHLAAT----------------------------------VGHLEIVEVLLEYG 103
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 19/139 (13%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L A G V +L+ GA++NA D G T LHLAA
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDA-----------------GVTPLHLAAK 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
G+ ++ L+ H A ++ +TPLHLAA G L++ ++LL+ GA ++A D G+
Sbjct: 57 RGHLEIVEVLLK-HGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115
Query: 617 PIHVAAQNNFPEVAQIFLR 635
++ N ++A+I +
Sbjct: 116 AFDISIDNGNEDLAEILQK 134
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
S +G+ L A G D R L+ + A ++ + TPLHLAA+ G L++ ++LL
Sbjct: 12 SDLGKKLLE-ATRAGQDDEVRILMA-NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 203
GA ++A+D G+ P+H+AA E+ ++ L + + V A K G T I+ G+ +
Sbjct: 70 GADVNASDSWGRTPLHLAATVGHLEIVEVLLE-YGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 204 IEELMKFD 211
E L K +
Sbjct: 129 AEILQKLN 136
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 37/147 (25%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
A AGQ ++L+ GA ++A DD G P+H+AA+ E+ ++ L+ H + V A+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDSW 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G T PL LAA GH +V VL++ G
Sbjct: 80 GRT------------------------------------PLHLAATVGHLEIVEVLLEYG 103
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ NG+ + E
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAE 130
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAA+ GH +V VL+K GA + G T +HLAA GH +++E + A
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 286 SKKLGVTALHVAAYFGQAD 304
K G TA ++ G D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
A G + VR+L+ GA + G T +HLAA+ GH +++E + A S G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
T LH+AA G + V LL + D + G T ++ +GNE+
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQD-------------KFGKTAFDISIDNGNED 127
Query: 351 VVRLL 355
+ +L
Sbjct: 128 LAEIL 132
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 588 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 644
A AGQ ++L+ GA ++A DD G P+H+AA+ E+ ++ L+ H + V A+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNAS 76
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 6/164 (3%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSA--LHLAAEHGYLKVCDALLTHKAFINS 82
LL A G +E V + + V+ D EGR + LH AA + + V + LL H A +++
Sbjct: 16 LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 83 KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 142
K + G LH A G+ ++ LV H AV+++ L K TPLH AA G+ ++CKLLL
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 133
Query: 143 LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTK 186
GA + G P+ + + Q LR +L+ A K
Sbjct: 134 HGADPTKKNRDGNTPLDLVKDGDTD--IQDLLRGDAALLDAAKK 175
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 69/148 (46%), Gaps = 20/148 (13%)
Query: 499 TCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNG 558
T LH AA + + +VE LL GA+++A DK G LH A G
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKG-----------------GLVPLHNACSYG 90
Query: 559 YADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 618
+ ++ LV H AV+++ L K TPLH AA G+ ++CKLLL GA + G P+
Sbjct: 91 HYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Query: 619 HVAAQNNFPEVAQIFLRAHPSLVTATTK 646
+ + Q LR +L+ A K
Sbjct: 150 DLVKDGDTD--IQDLLRGDAALLDAAKK 175
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 407 TCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDV 466
T LH AA + + +VE LL GA+++A DKGG +H A YGH + L++ G V+V
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 467 TT--------NNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLG 518
A G + LLL AD + +++G T L + G + ++L G
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKD-GDTDIQDLLRG 165
Query: 519 QGAEINATDK 528
A ++A K
Sbjct: 166 DAALLDAAKK 175
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G PL AC+ GH E+ ++ + A V+V D + LH AA G ++C LL H A
Sbjct: 79 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 138
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVID 115
K+R G T L L +G D+ L D AA++D
Sbjct: 139 TKKNRDGNTPLDL-VKDGDTDIQDLLRGD-AALLD 171
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 23 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINS 82
TPL A + +V +L + A V D+ G LH A +G+ +V + L+ H A +N
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 83 KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 142
T LH AA G ++C+ L+ H A TPL L + G + LL
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG 165
Query: 143 LGASIDA 149
A +DA
Sbjct: 166 DAALLDA 172
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 580 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
R+ TPLH AA ++ V + LL GA + A D G P+H A EVA++ ++
Sbjct: 45 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 100
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 21/190 (11%)
Query: 216 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV-LE 274
IS N + L+ A G V ++ +C D T +H AA G+N+V +
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA--GYNRVSVV 62
Query: 275 EMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGS 333
E +V++K K G+ LH A +G + L+ H G V + + +L
Sbjct: 63 EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVN--------VADLWK 112
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
TPLH AA G + +LLL + +G PL L G T + LL
Sbjct: 113 ---FTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLDLVKDGD--TDIQDLLRG 165
Query: 394 AADLLQSADK 403
A LL +A K
Sbjct: 166 DAALLDAAKK 175
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 4/119 (3%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L AA +G ++ VR+L+ + G V+A+ + G PLHLA H+ +V +LL
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILM-ANGADVNAEDKV-GLTPLHLAAMNDHLEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
AD + + D G+T LH+ A +GHL++VEVLL GA++NA DK G + + G+
Sbjct: 68 KNGAD-VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N + +G TPL +A H+E+V +L N A V+ D G + LHL A +G+L++ + L
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVL 99
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L H A +N++ + G+TA ++ NG DL L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 72/162 (44%), Gaps = 44/162 (27%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L AA G V +L+ GA++NA DK G +H AA H+ I+ LL+ G V
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADV 73
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+ + D G+T LH+ A +GHL++VEVLL GA++N
Sbjct: 74 N--------------------------AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 525 ATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
A DK G+TA ++ NG DL L
Sbjct: 108 AQDK-----------------FGKTAFDISIDNGNEDLAEIL 132
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 27/139 (19%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + DK G T LH+AA + HL++VEVLL GA++NA D
Sbjct: 21 AARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H A YGH+ I+ LL+ G V+ + DK G
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVN--------------------------AQDKFG 113
Query: 498 KTCLHIAATHGHLQMVEVL 516
KT I+ +G+ + E+L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 19/139 (13%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NA DKV G T LHLAAM
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAEDKV-----------------GLTPLHLAAM 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
N + ++ L+ + A V I + +TPLHL A G L++ ++LL GA ++A D G+
Sbjct: 57 NDHLEIVEVLLKNGADVNAIDAI-GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKT 115
Query: 617 PIHVAAQNNFPEVAQIFLR 635
++ N ++A+I +
Sbjct: 116 AFDISIDNGNEDLAEILQK 134
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 120
AA G L+ + A +N++ +VG T LHLAAMN + ++ L+ + A V I +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI- 79
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
+TPLHL A G L++ ++LL GA ++A D G+ ++ N ++A+I +
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA E+K G T +HLAA N H +++E + + A +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
T LH+ A +G + V LL H +D F G T ++ +GNE+
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKH-----GADVNAQDKF--------GKTAFDISIDNGNED 127
Query: 351 VVRLL 355
+ +L
Sbjct: 128 LAEIL 132
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + V A K G T H+AAM + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-- 68
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
++A + + E TPL L A GH +V VL+K GA ++K G TA ++ NG+
Sbjct: 69 NGADVNAIDAIGE-TPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 272 VLE 274
+ E
Sbjct: 128 LAE 130
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++A D G P+H+AA N+ E+ ++ L+ + + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGADVNAIDAI 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 245
G T H+ AM G + ++E L+K ++A+++ + T ++ + G+ ++ +L K
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLK--HGADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D+ G + LHLAA + +L++ + LL + A +N+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
+G T LHL AM G+ ++ L+ H A ++ +T ++ + G + ++L
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAV--IDILTLRKQTPLHLAAEAGQLQVCKLLL 141
S +G+ L AA G D R L+ + A V D + L TPLHLAA L++ ++LL
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNAEDKVGL---TPLHLAAMNDHLEIVEVLL 67
Query: 142 DLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSV 201
GA ++A D G+ P+H+ A E+ ++ L+ H + V A K G T I+ G+
Sbjct: 68 KNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNE 126
Query: 202 GVIEELMKFD 211
+ E L K +
Sbjct: 127 DLAEILQKLN 136
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 544 SRVGRTALHLAAMNGYADLCRFLVHDHAAV--IDILTLRKQTPLHLAAEAGQLQVCKLLL 601
S +G+ L AA G D R L+ + A V D + L TPLHLAA L++ ++LL
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNAEDKVGL---TPLHLAAMNDHLEIVEVLL 67
Query: 602 DLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
GA ++A D G+ P+H+ A E+ ++ L+ H + V A K + A D+
Sbjct: 68 KNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK-HGADVNAQDKFGKTAFDI 119
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 216 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEE 275
++A ++V TPL LAA H +V VL+K GA + G T +HL A GH +++E
Sbjct: 40 VNAEDKVG-LTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEV 98
Query: 276 MRSSKALNVYSKKLGVTALHVAAYFGQAD 304
+ A K G TA ++ G D
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIDNGNED 127
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 97/225 (43%), Gaps = 44/225 (19%)
Query: 397 LLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINT 456
L D++ +T LH A + GH ++VE LL G +N D G +H AA G I+
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91
Query: 457 LLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 516
LL KG HV V ++NG T LH AA+ ++ +L
Sbjct: 92 LLVKG------------AHVNAV--------------NQNGCTPLHYAASKNRHEIAVML 125
Query: 517 LGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDI 576
L GA +A D DA TA+H AA G + L+ + A +I
Sbjct: 126 LEGGANPDAKDHY-DA----------------TAMHRAAAKGNLKMVHILLF-YKASTNI 167
Query: 577 LTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 621
TPLHLA + +++ K L+ GASI + + + P+ VA
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N + GW+PL IA + G E+V +L A V+ +Q G + LH AA ++ L
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L A ++K TA+H AA G + L+ + A +I TPLHLA + +
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEER 184
Query: 134 LQVCKLLLDLGASIDATDDQGQKPIHVA 161
++ K L+ GASI + + + P+ VA
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ +T++ W AC+ GH E+V +L V+ D G S LH+AA G ++ ALL
Sbjct: 39 DSRTALHW-----ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
A +N+ ++ G T LH AA ++ L+ + A D T +H AA G L
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI 194
++ +LL AS + D +G P+H+A E A+ FL + + K+ T +
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAK-FLVTQGASIYIENKEEKTPLQV 211
Query: 195 AAMQGSVGVI 204
A +G +G+I
Sbjct: 212 A--KGGLGLI 219
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 9/202 (4%)
Query: 35 ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLA 94
EL +L + + DQ+ R+ALH A G+ ++ + LL +N K G + LH+A
Sbjct: 21 ELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 80
Query: 95 AMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQG 154
A G ++ + L+ A ++ + TPLH AA + ++ +LL+ GA+ DA D
Sbjct: 81 ASAGXDEIVKALLV-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
Query: 155 QKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF--DR 212
+H AA ++ I L S T +GNT H+A + V E KF +
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDT-EGNTPLHLACDEERV----EEAKFLVTQ 194
Query: 213 SGVISARNRVTEATPLQLAAEG 234
I N+ E TPLQ+A G
Sbjct: 195 GASIYIENK-EEKTPLQVAKGG 215
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 489 LLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN----------------ATDKVCDA 532
L D++ +T LH A + GH ++VE LL G +N D++ A
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
LL A +N+ ++ G T LH AA ++ L+ + A D T +H AA G
Sbjct: 92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYDATAMHRAAAKG 150
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEK 648
L++ +LL AS + D +G P+H+A E A+ + S+ +EK
Sbjct: 151 NLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEK 206
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 115/272 (42%), Gaps = 55/272 (20%)
Query: 196 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 255
A G + ++E + D+S ++ R T L A GH +V L++ G D++
Sbjct: 14 AYSGKLDELKERILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 256 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 315
G++ +H+AA G ++++ K L V HV A
Sbjct: 72 AGWSPLHIAASAGXDEIV-------------KALLVKGAHVNAV---------------- 102
Query: 316 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPL 375
+++G TPLH AA S N + + ++L G DA+ + +
Sbjct: 103 -----------------NQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYDA-TAM 143
Query: 376 HLACFGGHVTVVGLLL-SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINAT 434
H A G++ +V +LL +A+ +Q D G T LH+A ++ + L+ QGA I
Sbjct: 144 HRAAAKGNLKMVHILLFYKASTNIQ--DTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201
Query: 435 DKGGARSIHTAARYGHVGIINTLLQKGEKVDV 466
+K + A G +G+I L +GE+ +
Sbjct: 202 NKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 527 DKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLH 586
D++ + +L K+ + RTALH A G+ ++ FL+ V D +PLH
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLH 78
Query: 587 LAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
+AA AG ++ K LL GA ++A + G P+H AA N E+A + L
Sbjct: 79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 9 EISKAL-------NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLA 61
EI KAL N G TPL A ++ E+ +L A D D +A+H A
Sbjct: 87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA 146
Query: 62 AEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRK 121
A G LK+ LL +KA N + G T LHLA + +FLV A I I +
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQGASIYIENKEE 205
Query: 122 QTPLHLA 128
+TPL +A
Sbjct: 206 KTPLQVA 212
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 5/129 (3%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L A +G ++ VR+L+ + G V+A + G PLHLA GH+ +V +LL
Sbjct: 11 GSDLGKKLLE-ATRAGQDDEVRILM-ANGADVNAM-DDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AD + ++D G+T LH+AAT GHL++VEVLL GA++NA DK G + + G+
Sbjct: 68 KHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 452 GIINTLLQK 460
+ +LQK
Sbjct: 127 DLAE-ILQK 134
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 44/162 (27%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L A G V +L+ GA++NA D G +H AA+ GH+ I+ LL+ G V
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+ ++D G+T LH+AAT GHL++VEVLL GA++N
Sbjct: 74 N--------------------------ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 525 ATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
A DK G+TA ++ NG DL L
Sbjct: 108 AQDK-----------------FGKTAFDISIDNGNEDLAEIL 132
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N G TPL +A RGH+E+V +L + A V+ D GR+ LHLAA G+L++ + L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVL 99
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L + A +N++ + G+TA ++ NG DL L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 27/139 (19%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + D G T LH+AA GHL++VEVLL GA++NA+D
Sbjct: 21 ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AA GH+ I+ LL+ G V+ + DK G
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVN--------------------------AQDKFG 113
Query: 498 KTCLHIAATHGHLQMVEVL 516
KT I+ +G+ + E+L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 19/139 (13%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L A G V +L+ GA++NA D G T LHLAA
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDA-----------------GVTPLHLAAK 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
G+ ++ L+ H A ++ + +TPLHLAA G L++ ++LL+ GA ++A D G+
Sbjct: 57 RGHLEIVEVLLK-HGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115
Query: 617 PIHVAAQNNFPEVAQIFLR 635
++ N ++A+I +
Sbjct: 116 AFDISIDNGNEDLAEILQK 134
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 34/151 (22%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHLAA+ G+L++ + LL H A +N+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
GRT LHLAA G L++ ++LL+ G
Sbjct: 78 IWGRTPLHLAAT----------------------------------VGHLEIVEVLLEYG 103
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
S +G+ L A G D R L+ + A ++ + TPLHLAA+ G L++ ++LL
Sbjct: 12 SDLGKKLLE-ATRAGQDDEVRILMA-NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 203
GA ++A+D G+ P+H+AA E+ ++ L + + V A K G T I+ G+ +
Sbjct: 70 GADVNASDIWGRTPLHLAATVGHLEIVEVLLE-YGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 204 IEELMKFD 211
E L K +
Sbjct: 129 AEILQKLN 136
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
A AGQ ++L+ GA ++A DD G P+H+AA+ E+ ++ L+ H + V A+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDIW 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 245
G T H+AA G + ++E L+++ ++A+++ + T ++ + G+ ++ +L K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEY--GADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + EV L A+ + V A G T H+AA +G + ++E L+K
Sbjct: 13 DLGKKLLEATRAGQDDEVR--ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH- 69
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
G + + TPL LAA GH +V VL++ GA ++K G TA ++ NG+
Sbjct: 70 --GADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 272 VLE 274
+ E
Sbjct: 128 LAE 130
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAA+ GH +V VL+K GA + G T +HLAA GH +++E + A
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 286 SKKLGVTALHVAAYFGQAD 304
K G TA ++ G D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
A G + VR+L+ GA + G T +HLAA+ GH +++E + A S G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
T LH+AA G + V LL + D + G T ++ +GNE+
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQD-------------KFGKTAFDISIDNGNED 127
Query: 351 VVRLL 355
+ +L
Sbjct: 128 LAEIL 132
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 588 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 644
A AGQ ++L+ GA ++A DD G P+H+AA+ E+ ++ L+ H + V A+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNAS 76
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 10/138 (7%)
Query: 338 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE-NGYNPLHLACFGGHVTVVGLLLSRAA- 395
TPLHLA + + LL G D + ++ G PLHLAC G + VG+L
Sbjct: 47 TPLHLAVITNQPEIAEALL---GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 103
Query: 396 ----DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARS-IHTAARYGH 450
+L++ + NG TCLH+A+ HG+L +VE+L+ GA++NA + R+ +H A +
Sbjct: 104 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 163
Query: 451 VGIINTLLQKGEKVDVTT 468
+++ LL+ G V+ T
Sbjct: 164 PDLVSLLLKCGADVNRVT 181
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 10/185 (5%)
Query: 87 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR---KQTPLHLAAEAGQLQVCKLLLDL 143
G + LHLA ++ L ++ + L + +QTPLHLA Q ++ + LL
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP-----SLVTATTKDGNTCAHIAAMQ 198
G + D +G P+H+A + + ++ S++ AT +G+TC H+A++
Sbjct: 68 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127
Query: 199 GSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGF 258
G +G++E L+ ++A+ T L LA + + ++V +L+K GA G+
Sbjct: 128 GYLGIVELLVSL--GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 185
Query: 259 TAVHL 263
+ L
Sbjct: 186 SPYQL 190
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 37/182 (20%)
Query: 406 KTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVD 465
+T LH+A ++ E LLG G + D G +H A G + + L Q
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS----- 100
Query: 466 VTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINA 525
TT +L +L++ + NG TCLH+A+ HG+L +VE+L+ GA++NA
Sbjct: 101 CTTPHLH---------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 145
Query: 526 TDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPL 585
+ C+ GRTALHLA DL L+ A ++ +T + +P
Sbjct: 146 QEP-CN---------------GRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPY 188
Query: 586 HL 587
L
Sbjct: 189 QL 190
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 17/166 (10%)
Query: 271 QVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGE 330
+V+ +++ A + L T LH+A Q + LL GA E
Sbjct: 26 EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL-------------GAGCDPE 72
Query: 331 LGSESGMTPLHLAAYSGNENVVRLLLNSAGV----QVDAQTQENGYNPLHLACFGGHVTV 386
L G TPLHLA G V +L S + T NG+ LHLA G++ +
Sbjct: 73 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132
Query: 387 VGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 432
V LL+S AD+ NG+T LH+A + +V +LL GA++N
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 8/154 (5%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYL------ 67
LN Q ++ TPL +A E+ +L ++ D G + LHLA E G L
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 68 -KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLH 126
+ C H + + + + G T LHLA+++GY + LV A V +T LH
Sbjct: 98 TQSCTTPHLH-SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 156
Query: 127 LAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHV 160
LA + + LLL GA ++ QG P +
Sbjct: 157 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 185 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGV--ISARNRVTEATPLQLAAEGGHANVVRV 242
T+DG++ H+A + + E+++ + + ++ +N + + TPL LA +
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEA 63
Query: 243 LVKAGASCTDENKTGFTAVHLAAQNG---HNQVLEEMRSSKALNVYSKKL---GVTALHV 296
L+ AG + G T +HLA + G VL + ++ L+ K G T LH+
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123
Query: 297 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 356
A+ G V ELL + V + P +G T LHLA N ++V LLL
Sbjct: 124 ASIHGYLGIV-ELLVSLGADVNAQEPC-----------NGRTALHLAVDLQNPDLVSLLL 171
Query: 357 NSAGVQVDAQTQENGYNPLHL 377
G V+ T + GY+P L
Sbjct: 172 -KCGADVNRVTYQ-GYSPYQL 190
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
D G T LH+A G L V VL + C H + + + + G T LHL
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVL----------TQSCTTPHLH-SILKATNYNGHTCLHL 123
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 613
A+++GY + LV A V +T LHLA + + LLL GA ++ Q
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183
Query: 614 GQKPIHV 620
G P +
Sbjct: 184 GYSPYQL 190
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 25/146 (17%)
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
+T LH+A ++ E LLG G CD L + G T LHLA
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAG---------CDPEL--------RDFRGNTPLHLACEQ 88
Query: 558 GYADLCRFLV------HDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 611
G L H H+ ++ T LHLA+ G L + +LL+ LGA ++A +
Sbjct: 89 GCLASVGVLTQSCTTPHLHS-ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 147
Query: 612 D-QGQKPIHVAAQNNFPEVAQIFLRA 636
G+ +H+A P++ + L+
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKC 173
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 547 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR---KQTPLHLAAEAGQLQVCKLLLDL 603
G + LHLA ++ L ++ + L + +QTPLHLA Q ++ + LL
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67
Query: 604 GASIDATDDQGQKPIHVAAQ 623
G + D +G P+H+A +
Sbjct: 68 GCDPELRDFRGNTPLHLACE 87
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 10/138 (7%)
Query: 338 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE-NGYNPLHLACFGGHVTVVGLLLSRAA- 395
TPLHLA + + LL G D + ++ G PLHLAC G + VG+L
Sbjct: 44 TPLHLAVITNQPEIAEALL---GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 100
Query: 396 ----DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARS-IHTAARYGH 450
+L++ + NG TCLH+A+ HG+L +VE+L+ GA++NA + R+ +H A +
Sbjct: 101 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 160
Query: 451 VGIINTLLQKGEKVDVTT 468
+++ LL+ G V+ T
Sbjct: 161 PDLVSLLLKCGADVNRVT 178
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 10/185 (5%)
Query: 87 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR---KQTPLHLAAEAGQLQVCKLLLDL 143
G + LHLA ++ L ++ + L + +QTPLHLA Q ++ + LL
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 64
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP-----SLVTATTKDGNTCAHIAAMQ 198
G + D +G P+H+A + + ++ S++ AT +G+TC H+A++
Sbjct: 65 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 124
Query: 199 GSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGF 258
G +G++E L+ ++A+ T L LA + + ++V +L+K GA G+
Sbjct: 125 GYLGIVELLVSLGAD--VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 182
Query: 259 TAVHL 263
+ L
Sbjct: 183 SPYQL 187
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 37/182 (20%)
Query: 406 KTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVD 465
+T LH+A ++ E LLG G + D G +H A G + + L Q
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS----- 97
Query: 466 VTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINA 525
TT +L +L++ + NG TCLH+A+ HG+L +VE+L+ GA++NA
Sbjct: 98 CTTPHLH---------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 142
Query: 526 TDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPL 585
+ C+ GRTALHLA DL L+ A ++ +T + +P
Sbjct: 143 QEP-CN---------------GRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPY 185
Query: 586 HL 587
L
Sbjct: 186 QL 187
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 271 QVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGE 330
+V+ +++ A + L T LH+A Q + LL GA E
Sbjct: 23 EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL-------------GAGCDPE 69
Query: 331 LGSESGMTPLHLAAYSGNENVVRLLLNSAGV----QVDAQTQENGYNPLHLACFGGHVTV 386
L G TPLHLA G V +L S + T NG+ LHLA G++ +
Sbjct: 70 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 129
Query: 387 VGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGG 438
V LL+S AD+ NG+T LH+A + +V +LL GA++N G
Sbjct: 130 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 181
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYL------ 67
LN Q ++ TPL +A E+ +L ++ D G + LHLA E G L
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 68 -KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLH 126
+ C H + + + + G T LHLA+++GY + LV A V +T LH
Sbjct: 95 TQSCTTPHLH-SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 153
Query: 127 LAAEAGQLQVCKLLLDLGASIDATDDQGQKP 157
LA + + LLL GA ++ QG P
Sbjct: 154 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 185 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGV--ISARNRVTEATPLQLAAEGGHANVVRV 242
T+DG++ H+A + + E+++ + + ++ +N + + TPL LA +
Sbjct: 2 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEA 60
Query: 243 LVKAGASCTDENKTGFTAVHLAAQNG---HNQVLEEMRSSKALNVYSKKL---GVTALHV 296
L+ AG + G T +HLA + G VL + ++ L+ K G T LH+
Sbjct: 61 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 120
Query: 297 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 356
A+ G V ELL + V + P +G T LHLA N ++V LLL
Sbjct: 121 ASIHGYLGIV-ELLVSLGADVNAQEPC-----------NGRTALHLAVDLQNPDLVSLLL 168
Query: 357 NSAGVQVDAQTQENGYNPLHL 377
G V+ T + GY+P L
Sbjct: 169 -KCGADVNRVTYQ-GYSPYQL 187
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
D G T LH+A G L V VL + C H + + + + G T LHL
Sbjct: 72 DFRGNTPLHLACEQGCLASVGVL----------TQSCTTPHLH-SILKATNYNGHTCLHL 120
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 613
A+++GY + LV A V +T LHLA + + LLL GA ++ Q
Sbjct: 121 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 180
Query: 614 GQKP 617
G P
Sbjct: 181 GYSP 184
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 25/146 (17%)
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
+T LH+A ++ E LLG G CD L + G T LHLA
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAG---------CDPEL--------RDFRGNTPLHLACEQ 85
Query: 558 GYADLCRFLV------HDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 611
G L H H+ ++ T LHLA+ G L + +LL+ LGA ++A +
Sbjct: 86 GCLASVGVLTQSCTTPHLHS-ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 144
Query: 612 D-QGQKPIHVAAQNNFPEVAQIFLRA 636
G+ +H+A P++ + L+
Sbjct: 145 PCNGRTALHLAVDLQNPDLVSLLLKC 170
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 547 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR---KQTPLHLAAEAGQLQVCKLLLDL 603
G + LHLA ++ L ++ + L + +QTPLHLA Q ++ + LL
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 64
Query: 604 GASIDATDDQGQKPIHVAAQ 623
G + D +G P+H+A +
Sbjct: 65 GCDPELRDFRGNTPLHLACE 84
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 538 AFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVC 597
AF+N ++ + +T LHLA + ++ L+ ++ R TPLHLA E G L
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDFRGNTPLHLACEQGCLASV 91
Query: 598 KLLLD------LGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
+L L + + AT+ G +H+A+ + + + ++ +
Sbjct: 92 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 134
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N + G TPL +A GH+E+V +L N A V+ D G + LHLAA G+L++ + L
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L H A +N++ + G+TA ++ NG DL L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 17/149 (11%)
Query: 276 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 335
MR S + + LG L AA GQ D VR L+++ D E
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-AARAGQDDEVRILMANGADVNAKD-------------EY 46
Query: 336 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA 395
G+TPL+LA G+ +V +LL + G V+A G+ PLHLA F GH+ + +LL A
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKN-GADVNA-VDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
Query: 396 DLLQSADKNGKTCLHIAATHGHLQMVEVL 424
D + + DK GKT I+ +G+ + E+L
Sbjct: 105 D-VNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 17/110 (15%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATD----- 527
G V +L++ AD+ + D+ G T L++A HGHL++VEVLL GA++NA D
Sbjct: 24 AGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFT 82
Query: 528 -----------KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
++ + LL H A +N++ + G+TA ++ NG DL L
Sbjct: 83 PLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 27/139 (19%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + D+ G T L++A HGHL++VEVLL GA++NA D
Sbjct: 21 AARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AA GH+ I LL+ G V+ + DK G
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGADVN--------------------------AQDKFG 113
Query: 498 KTCLHIAATHGHLQMVEVL 516
KT I+ +G+ + E+L
Sbjct: 114 KTAFDISIGNGNEDLAEIL 132
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NA D+ G T L+LA
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAKDEY-----------------GLTPLYLATA 56
Query: 557 NGYADLCRFLVHDHAAV--IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQG 614
+G+ ++ L+ + A V +D + TPLHLAA G L++ ++LL GA ++A D G
Sbjct: 57 HGHLEIVEVLLKNGADVNAVDAIGF---TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Query: 615 QKPIHVAAQNNFPEVAQIFLR 635
+ ++ N ++A+I +
Sbjct: 114 KTAFDISIGNGNEDLAEILQK 134
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 34/151 (22%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D+ G + L+LA HG+L++ + LL + A +N+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
+G T LHLAA G L++ ++LL G
Sbjct: 78 AIGFTPLHLAAF----------------------------------IGHLEIAEVLLKHG 103
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
S +G+ L AA G D R L+ + A V + TPL+LA G L++ ++LL
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN 69
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 203
GA ++A D G P+H+AA E+A++ L+ H + V A K G T I+ G+ +
Sbjct: 70 GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDL 128
Query: 204 IEELMKFD 211
E L K +
Sbjct: 129 AEILQKLN 136
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA +++ G T ++LA +GH +++E + + A +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
T LH+AA+ G + LL H D + G T ++ +GNE+
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQD-------------KFGKTAFDISIGNGNED 127
Query: 351 VVRLL 355
+ +L
Sbjct: 128 LAEIL 132
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 544 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 603
S +G+ L AA G D R L+ + A V + TPL+LA G L++ ++LL
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN 69
Query: 604 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIAAGKHCEG 663
GA ++A D G P+H+AA E+A++ L+ H + V A K + A D I+ G E
Sbjct: 70 GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFD-ISIGNGNED 127
Query: 664 MA 665
+A
Sbjct: 128 LA 129
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LA GH +V VL+K GA + GFT +HLAA GH ++ E + A
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA 108
Query: 286 SKKLGVTALHVAAYFGQAD 304
K G TA ++ G D
Sbjct: 109 QDKFGKTAFDISIGNGNED 127
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 37/147 (25%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA ++A D+ G P+++A + E+ ++ L+
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK------------ 68
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
A + A+ ++G TPL LAA GH + VL+K G
Sbjct: 69 --NGADVNAVD-AIGF----------------------TPLHLAAFIGHLEIAEVLLKHG 103
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K G TA ++ NG+ + E
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLAE 130
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 5/129 (3%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L A +G ++ VR+L+ + G V+A + G PLHLA GH+ +V +LL
Sbjct: 11 GSDLGKKLLE-ATRAGQDDEVRILM-ANGADVNAM-DDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AD + + D G+T LH+AAT GHL++VEVLL GA++NA DK G + + G+
Sbjct: 68 KHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 452 GIINTLLQK 460
+ +LQK
Sbjct: 127 DLAE-ILQK 134
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 44/162 (27%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L A G V +L+ GA++NA D G +H AA+ GH+ I+ LL+ G V
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+ + D G+T LH+AAT GHL++VEVLL GA++N
Sbjct: 74 N--------------------------ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 525 ATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
A DK G+TA ++ NG DL L
Sbjct: 108 AQDK-----------------FGKTAFDISIDNGNEDLAEIL 132
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N G TPL +A RGH+E+V +L + A V+ D GR+ LHLAA G+L++ + L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L + A +N++ + G+TA ++ NG DL L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 27/139 (19%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + D G T LH+AA GHL++VEVLL GA++NA D
Sbjct: 21 ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AA GH+ I+ LL+ G V+ + DK G
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVN--------------------------AQDKFG 113
Query: 498 KTCLHIAATHGHLQMVEVL 516
KT I+ +G+ + E+L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 34/151 (22%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D G + LHLAA+ G+L++ + LL H A +N++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
GRT LHLAA G L++ ++LL+ G
Sbjct: 78 IWGRTPLHLAAT----------------------------------VGHLEIVEVLLEYG 103
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 19/139 (13%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L A G V +L+ GA++NA D G T LHLAA
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDA-----------------GVTPLHLAAK 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
G+ ++ L+ H A ++ + +TPLHLAA G L++ ++LL+ GA ++A D G+
Sbjct: 57 RGHLEIVEVLLK-HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKT 115
Query: 617 PIHVAAQNNFPEVAQIFLR 635
++ N ++A+I +
Sbjct: 116 AFDISIDNGNEDLAEILQK 134
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 3/128 (2%)
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
S +G+ L A G D R L+ + A ++ + TPLHLAA+ G L++ ++LL
Sbjct: 12 SDLGKKLLE-ATRAGQDDEVRILMA-NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 203
GA ++A D G+ P+H+AA E+ ++ L + + V A K G T I+ G+ +
Sbjct: 70 GADVNARDIWGRTPLHLAATVGHLEIVEVLLE-YGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 204 IEELMKFD 211
E L K +
Sbjct: 129 AEILQKLN 136
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
A AGQ ++L+ GA ++A DD G P+H+AA+ E+ ++ L+ H + V A
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNARDIW 79
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 245
G T H+AA G + ++E L+++ ++A+++ + T ++ + G+ ++ +L K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEY--GADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + EV L A+ + V A G T H+AA +G + ++E L+K
Sbjct: 13 DLGKKLLEATRAGQDDEVR--ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-- 68
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
++AR+ + TPL LAA GH +V VL++ GA ++K G TA ++ NG+
Sbjct: 69 HGADVNARD-IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 272 VLE 274
+ E
Sbjct: 128 LAE 130
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAA+ GH +V VL+K GA + G T +HLAA GH +++E + A
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 286 SKKLGVTALHVAAYFGQAD 304
K G TA ++ G D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
GVT LH+AA G + V LL H D G TPLHLAA G+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDI-------------WGRTPLHLAATVGHL 93
Query: 350 NVVRLLLNSAGVQVDAQTQ 368
+V +LL G V+AQ +
Sbjct: 94 EIVEVLL-EYGADVNAQDK 111
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 44/162 (27%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L AA G V +L+ GA++NA D+ G +H AA+ GH+ I+ LL+ G V
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV 73
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+ + D G T LH+AA GHL++VEVLL GA++N
Sbjct: 74 N--------------------------AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVN 107
Query: 525 ATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
A DK G+TA ++ NG DL L
Sbjct: 108 AQDK-----------------FGKTAFDISIDNGNEDLAEIL 132
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 19/150 (12%)
Query: 276 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 335
MR S + + LG L AA GQ D VR L+++ D E
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-AARAGQDDEVRILMANGADVNALD-------------ED 46
Query: 336 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN-GYNPLHLACFGGHVTVVGLLLSRA 394
G+TPLHLAA G+ +V +LL D ++N G PLHLA GH+ +V +LL
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYG---ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHG 103
Query: 395 ADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
AD + + DK GKT I+ +G+ + E+L
Sbjct: 104 AD-VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N G TPL +A GH+E+V +L A V+ D G + LHLAA G+L++ + L
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVL 99
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L H A +N++ + G+TA ++ NG DL L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 27/139 (19%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + D++G T LH+AA GHL++VEVLL GA++NA D
Sbjct: 21 AARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AA GH+ I+ LL+ G V+ + DK G
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGADVN--------------------------AQDKFG 113
Query: 498 KTCLHIAATHGHLQMVEVL 516
KT I+ +G+ + E+L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
S +G+ L AA G D R L+ + A ++ L TPLHLAA+ G L++ ++LL
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMA-NGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY 69
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 203
GA ++A D+ G P+H+AA E+ ++ L+ H + V A K G T I+ G+ +
Sbjct: 70 GADVNAEDNFGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 204 IEELMKFD 211
E L K +
Sbjct: 129 AEILQKLN 136
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D++G + LHLAA+ G+L++ + LL + A +N++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
G T LHLAA+ G+ ++ L+ H A ++ +T ++ + G + ++L
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + V A +DG T H+AA G + ++E L+K+
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY- 69
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
++A + TPL LAA GH +V VL+K GA ++K G TA ++ NG+
Sbjct: 70 -GADVNAEDNFG-ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 272 VLE 274
+ E
Sbjct: 128 LAE 130
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 544 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 603
S +G+ L AA G D R L+ + A ++ L TPLHLAA+ G L++ ++LL
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMA-NGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY 69
Query: 604 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
GA ++A D+ G P+H+AA E+ ++ L+ H + V A K + A D+
Sbjct: 70 GADVNAEDNFGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDI 119
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 19/139 (13%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L+ GA++NA D+ G T LHLAA
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNALDED-----------------GLTPLHLAAQ 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
G+ ++ L+ + A ++ TPLHLAA G L++ ++LL GA ++A D G+
Sbjct: 57 LGHLEIVEVLLK-YGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKT 115
Query: 617 PIHVAAQNNFPEVAQIFLR 635
++ N ++A+I +
Sbjct: 116 AFDISIDNGNEDLAEILQK 134
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAA+ GH +V VL+K GA E+ G T +HLAA GH +++E + A
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNA 108
Query: 286 SKKLGVTALHVAAYFGQAD 304
K G TA ++ G D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA ++ G T +HLAAQ GH +++E + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
+T LH+AA G + V LL H D + G T ++ +GNE+
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQD-------------KFGKTAFDISIDNGNED 127
Query: 351 VVRLL 355
+ +L
Sbjct: 128 LAEIL 132
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSA--LHLAAEHGYLKVCDALLTHKAFINS 82
LL A G +E V + + V+ D EGR + LH AA + + V + LL H A +++
Sbjct: 14 LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 83 KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 142
K + G LH A G+ ++ LV H AV+++ L K TPLH AA G+ ++CKLLL
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 131
Query: 143 LGASIDATDDQGQKPI 158
GA + G P+
Sbjct: 132 HGADPTKKNRDGNTPL 147
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 499 TCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNG 558
T LH AA + + +VE LL GA+++A DK G LH A G
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKG-----------------GLVPLHNACSYG 88
Query: 559 YADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 618
+ ++ LV H AV+++ L K TPLH AA G+ ++CKLLL GA + G P+
Sbjct: 89 HYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 38/163 (23%)
Query: 120 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 179
R+ TPLH AA ++ V + LL GA + A D G P+H A EVA++ ++
Sbjct: 43 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK---- 98
Query: 180 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 239
G+V + +L KF TPL AA G +
Sbjct: 99 ------------------HGAVVNVADLWKF---------------TPLHEAAAKGKYEI 125
Query: 240 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 282
++L++ GA T +N+ G T + L ++G + + +R AL
Sbjct: 126 CKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAAL 167
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 407 TCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDV 466
T LH AA + + +VE LL GA+++A DKGG +H A YGH + L++ G V+V
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 467 TT--------NNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLG 518
A G + LLL AD + +++G T L + G + ++L G
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKD-GDTDIQDLLRG 163
Query: 519 QGA 521
A
Sbjct: 164 DAA 166
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G PL AC+ GH E+ ++ + A V+V D + LH AA G ++C LL H A
Sbjct: 77 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 136
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHA 111
K+R G T L L +G D+ L D A
Sbjct: 137 TKKNRDGNTPLDL-VKDGDTDIQDLLRGDAA 166
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 18/112 (16%)
Query: 476 VTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATD-------- 527
V+VV LL AD+ + DK G LH A ++GH ++ E+L+ GA +N D
Sbjct: 57 VSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 115
Query: 528 --------KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHA 571
++C LL H A K+R G T L L +G D+ L D A
Sbjct: 116 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAA 166
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 338 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADL 397
TPLH AA +VV LL G V A+ + G PLH AC GH V LL+ A +
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQH-GADVHAKDK-GGLVPLHNACSYGHYEVAELLVKHGA-V 102
Query: 398 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGG 438
+ AD T LH AA G ++ ++LL GA+ ++ G
Sbjct: 103 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG 143
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 23 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINS 82
TPL A + +V +L + A V D+ G LH A +G+ +V + L+ H A +N
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 83 KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEA 131
T LH AA G ++C+ L+ H A TPL L +
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKDG 153
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 580 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
R+ TPLH AA ++ V + LL GA + A D G P+H A EVA++ ++
Sbjct: 43 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 98
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 540 INSKSRVGR--TALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVC 597
+N + GR T LH AA + +L+ H A + PLH A G +V
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 598 KLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIAA 657
+LL+ GA ++ D P+H AA E+ ++ L+ H + T ++ DL+
Sbjct: 94 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD 152
Query: 658 G 658
G
Sbjct: 153 G 153
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 20/184 (10%)
Query: 214 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV- 272
G + + N + L+ A G V ++ +C D T +H AA G+N+V
Sbjct: 1 GAMGSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA--GYNRVS 58
Query: 273 LEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGEL 331
+ E +V++K K G+ LH A +G + L+ H G V + + +L
Sbjct: 59 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVN--------VADL 108
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
TPLH AA G + +LLL + +G PL L G + LL
Sbjct: 109 WK---FTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLDLV-KDGDTDIQDLLR 162
Query: 392 SRAA 395
AA
Sbjct: 163 GDAA 166
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSA--LHLAAEHGYLKVCDALLTHKAFINS 82
LL A G +E V + + V+ D EGR + LH AA + + V + LL H A +++
Sbjct: 12 LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 83 KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 142
K + G LH A G+ ++ LV H AV+++ L K TPLH AA G+ ++CKLLL
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129
Query: 143 LGASIDATDDQGQKPI 158
GA + G P+
Sbjct: 130 HGADPTKKNRDGNTPL 145
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 499 TCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNG 558
T LH AA + + +VE LL GA+++A DK G LH A G
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKG-----------------GLVPLHNACSYG 86
Query: 559 YADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 618
+ ++ LV H AV+++ L K TPLH AA G+ ++CKLLL GA + G P+
Sbjct: 87 HYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 38/163 (23%)
Query: 120 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 179
R+ TPLH AA ++ V + LL GA + A D G P+H A EVA++ ++
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK---- 96
Query: 180 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 239
G+V + +L KF TPL AA G +
Sbjct: 97 ------------------HGAVVNVADLWKF---------------TPLHEAAAKGKYEI 123
Query: 240 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 282
++L++ GA T +N+ G T + L ++G + + +R AL
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAAL 165
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 407 TCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDV 466
T LH AA + + +VE LL GA+++A DKGG +H A YGH + L++ G V+V
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 467 TT--------NNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLG 518
A G + LLL AD + +++G T L + G + ++L G
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKD-GDTDIQDLLRG 161
Query: 519 QGA 521
A
Sbjct: 162 DAA 164
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G PL AC+ GH E+ ++ + A V+V D + LH AA G ++C LL H A
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 134
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHA 111
K+R G T L L +G D+ L D A
Sbjct: 135 TKKNRDGNTPLDL-VKDGDTDIQDLLRGDAA 164
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 338 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADL 397
TPLH AA +VV LL G V A+ + G PLH AC GH V LL+ A +
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQH-GADVHAKDK-GGLVPLHNACSYGHYEVAELLVKHGA-V 100
Query: 398 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGG 438
+ AD T LH AA G ++ ++LL GA+ ++ G
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG 141
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 18/112 (16%)
Query: 476 VTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATD-------- 527
V+VV LL AD+ + DK G LH A ++GH ++ E+L+ GA +N D
Sbjct: 55 VSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 113
Query: 528 --------KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHA 571
++C LL H A K+R G T L L +G D+ L D A
Sbjct: 114 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAA 164
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 23 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINS 82
TPL A + +V +L + A V D+ G LH A +G+ +V + L+ H A +N
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 83 KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEA 131
T LH AA G ++C+ L+ H A TPL L +
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKDG 151
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 580 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
R+ TPLH AA ++ V + LL GA + A D G P+H A EVA++ ++
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 540 INSKSRVGR--TALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVC 597
+N + GR T LH AA + +L+ H A + PLH A G +V
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 598 KLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIAA 657
+LL+ GA ++ D P+H AA E+ ++ L+ H + T ++ DL+
Sbjct: 92 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD 150
Query: 658 G 658
G
Sbjct: 151 G 151
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 21/168 (12%)
Query: 231 AAEGGHANVVRVLVKAGA-SCTDENKTGFTAVHLAAQNGHNQV-LEEMRSSKALNVYSK- 287
AA+ G V+ L + +C D T +H AA G+N+V + E +V++K
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA--GYNRVSVVEYLLQHGADVHAKD 72
Query: 288 KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 347
K G+ LH A +G + L+ H G V + + +L TPLH AA G
Sbjct: 73 KGGLVPLHNACSYGHYEVAELLVKH--GAVVN--------VADLWK---FTPLHEAAAKG 119
Query: 348 NENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA 395
+ +LLL + +G PL L G + LL AA
Sbjct: 120 KYEICKLLLQHGADPT--KKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS M + GN VRL L++ ++ Q ++G++PLH AC G VV +L+
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLN-QGDDHGFSPLHWACREGRSAVVEMLI 59
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
R A + ++ T LH+AA+HGH +V+ LL A+INA ++ G +H A +G
Sbjct: 60 MRGA-RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118
Query: 452 GIINTLLQKGEKVDV 466
+ L+ G V +
Sbjct: 119 QVAEDLVANGALVSI 133
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 26/150 (17%)
Query: 379 CFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGG 438
C G+ V L L + L D +G + LH A G +VE+L+ +GA IN ++G
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 439 ARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGK 498
+H AA +GH I+ LLQ K D+ N ++G
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQY--KADINAVN------------------------EHGN 106
Query: 499 TCLHIAATHGHLQMVEVLLGQGAEINATDK 528
LH A G Q+ E L+ GA ++ +K
Sbjct: 107 VPLHYACFWGQDQVAEDLVANGALVSICNK 136
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
LN+ G++PL AC G +V ++ AR++V ++ + LHLAA HG+ + L
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLA 128
L +KA IN+ + G LH A G + LV + A++ I + P+ A
Sbjct: 92 LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKA 145
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 474 GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDAL 533
G+ V L L + L D +G + LH A G +VE+L+ +GA IN ++ D
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-- 73
Query: 534 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 593
T LHLAA +G+ D+ + L+ + A I+ + PLH A GQ
Sbjct: 74 ---------------TPLHLAASHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQ 117
Query: 594 LQVCKLLLDLGASIDATDDQGQKPIHVA 621
QV + L+ GA + + G+ P+ A
Sbjct: 118 DQVAEDLVANGALVSICNKYGEMPVDKA 145
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Query: 25 LLIACNRGHMELVNTMLNN-HARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSK 83
+ C G+ V L+N ++ D G S LH A G V + L+ A IN
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
+R T LHLAA +G+ D+ + L+ + A I+ + PLH A GQ QV + L+
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127
Query: 144 GASIDATDDQGQKPIHVA 161
GA + + G+ P+ A
Sbjct: 128 GALVSICNKYGEMPVDKA 145
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 139
+N G + LH A G + + L+ A I+++ TPLHLAA G + +
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 140 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDG 188
LL A I+A ++ G P+H A +VA+ + A+ +LV+ K G
Sbjct: 91 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYG 138
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 540 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 599
+N G + LH A G + + L+ A I+++ TPLHLAA G + +
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 600 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIAA 657
LL A I+A ++ G P+H A +VA+ + A+ +LV+ K E D A
Sbjct: 91 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGEMPVDKAKA 147
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
+PL A G + VV +L+ GA N+ T +HLAA +GH +++++ KA
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSH 312
+ G LH A ++GQ +L+++
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVAN 127
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 193 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 252
H A +G V+E L+ R I+ NR + TPL LAA GH ++V+ L++ A
Sbjct: 44 HWACREGRSAVVEMLIM--RGARINVMNR-GDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 253 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELL 310
N+ G +H A G +QV E++ ++ AL K G + A +RELL
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA-----PLRELL 153
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 26/110 (23%)
Query: 430 EINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADL 489
++N D G +H A R G ++ L+ +G +++V ++R D
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV----------------MNRGDD- 73
Query: 490 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAF 539
T LH+AA+HGH +V+ LL A+INA ++ + L + F
Sbjct: 74 ---------TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF 114
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 70/162 (43%), Gaps = 44/162 (27%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L AA G V +L GA++NA D G +H AA GH+ I+ LL+ G V
Sbjct: 15 GKKLLE-AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV 73
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+ T N G+T LH+AA HL++VEVLL GA++N
Sbjct: 74 NATGNT--------------------------GRTPLHLAAWADHLEIVEVLLKHGADVN 107
Query: 525 ATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
A DK G+TA ++ NG DL L
Sbjct: 108 AQDK-----------------FGKTAFDISIDNGNEDLAEIL 132
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS+ G L AA +G ++ VR+L + G V+A G+ PLHLA GH+ +V +LL
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRIL-TANGADVNANDYW-GHTPLHLAAMLGHLEIVEVLL 67
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
AD + + G+T LH+AA HL++VEVLL GA++NA DK G + + G+
Sbjct: 68 KNGAD-VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 452 GIINTLLQK 460
+ +LQK
Sbjct: 127 DLA-EILQK 134
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N G TPL +A GH+E+V +L N A V+ GR+ LHLAA +L++ + L
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVL 99
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L H A +N++ + G+TA ++ NG DL L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 3/127 (2%)
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
S +G+ L AA G D R L + A ++ TPLHLAA G L++ ++LL
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILTAN-GADVNANDYWGHTPLHLAAMLGHLEIVEVLLKN 69
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 203
GA ++AT + G+ P+H+AA + E+ ++ L+ H + V A K G T I+ G+ +
Sbjct: 70 GADVNATGNTGRTPLHLAAWADHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 204 IEELMKF 210
E L K
Sbjct: 129 AEILQKL 135
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 27/139 (19%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L + AD+ + D G T LH+AA GHL++VEVLL GA++NAT
Sbjct: 21 AARAGQDDEVRILTANGADV-NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT 79
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AA H+ I+ LL+ G V+ + DK G
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLKHGADVN--------------------------AQDKFG 113
Query: 498 KTCLHIAATHGHLQMVEVL 516
KT I+ +G+ + E+L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 19/139 (13%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
GK L AA G V +L GA++NA D G T LHLAAM
Sbjct: 15 GKKLLE-AARAGQDDEVRILTANGADVNAND-----------------YWGHTPLHLAAM 56
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
G+ ++ L+ + A ++ +TPLHLAA A L++ ++LL GA ++A D G+
Sbjct: 57 LGHLEIVEVLLKN-GADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKT 115
Query: 617 PIHVAAQNNFPEVAQIFLR 635
++ N ++A+I +
Sbjct: 116 AFDISIDNGNEDLAEILQK 134
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 544 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 603
S +G+ L AA G D R L + A ++ TPLHLAA G L++ ++LL
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILTAN-GADVNANDYWGHTPLHLAAMLGHLEIVEVLLKN 69
Query: 604 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
GA ++AT + G+ P+H+AA + E+ ++ L+ H + V A K + A D+
Sbjct: 70 GADVNATGNTGRTPLHLAAWADHLEIVEVLLK-HGADVNAQDKFGKTAFDI 119
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 34/151 (22%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V + N A V+ D G + LHLAA G+L++ + LL + A +N+
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
GRT LHLAA +AD L++ ++LL G
Sbjct: 78 NTGRTPLHLAA---WAD-------------------------------HLEIVEVLLKHG 103
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
A ++A D G+ ++ N ++A+I +
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 152 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D G+K + A EV L A+ + V A G+T H+AAM G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK-- 68
Query: 212 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
+G T TPL LAA H +V VL+K GA ++K G TA ++ NG+
Sbjct: 69 -NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 272 VLE 274
+ E
Sbjct: 128 LAE 130
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAA GH +V VL+K GA TG T +HLAA H +++E + A
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNA 108
Query: 286 SKKLGVTALHVAAYFGQAD 304
K G TA ++ G D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L GA + G T +HLAA GH +++E + + A + G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
T LH+AA+ + V LL H D + G T ++ +GNE+
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQD-------------KFGKTAFDISIDNGNED 127
Query: 351 VVRLL 355
+ +L
Sbjct: 128 LAEIL 132
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
Query: 337 MTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAAD 396
M + GN VRL L++ ++ Q ++G++PLH AC G VV +L+ R A
Sbjct: 1 MDDIFTQCREGNAVAVRLWLDNTENDLN-QGDDHGFSPLHWACREGRSAVVEMLIMRGA- 58
Query: 397 LLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINT 456
+ ++ T LH+AA+HGH +V+ LL A+INA ++ G +H A +G +
Sbjct: 59 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAED 118
Query: 457 LLQKGEKVDVTT 468
L+ G V +
Sbjct: 119 LVANGALVSICN 130
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 26/150 (17%)
Query: 379 CFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGG 438
C G+ V L L + L D +G + LH A G +VE+L+ +GA IN ++G
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 67
Query: 439 ARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGK 498
+H AA +GH I+ LLQ K D+ N ++G
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQY--KADINAVN------------------------EHGN 101
Query: 499 TCLHIAATHGHLQMVEVLLGQGAEINATDK 528
LH A G Q+ E L+ GA ++ +K
Sbjct: 102 VPLHYACFWGQDQVAEDLVANGALVSICNK 131
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
LN+ G++PL AC G +V ++ AR++V ++ + LHLAA HG+ + L
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 86
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLA 128
L +KA IN+ + G LH A G + LV + A++ I + P+ A
Sbjct: 87 LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKA 140
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 474 GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDAL 533
G+ V L L + L D +G + LH A G +VE+L+ +GA IN ++ D
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-- 68
Query: 534 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 593
T LHLAA +G+ D+ + L+ + A I+ + PLH A GQ
Sbjct: 69 ---------------TPLHLAASHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQ 112
Query: 594 LQVCKLLLDLGASIDATDDQGQKPIHVA 621
QV + L+ GA + + G+ P+ A
Sbjct: 113 DQVAEDLVANGALVSICNKYGEMPVDKA 140
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Query: 25 LLIACNRGHMELVNTMLNN-HARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSK 83
+ C G+ V L+N ++ D G S LH A G V + L+ A IN
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
+R T LHLAA +G+ D+ + L+ + A I+ + PLH A GQ QV + L+
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 122
Query: 144 GASIDATDDQGQKPIHVA 161
GA + + G+ P+ A
Sbjct: 123 GALVSICNKYGEMPVDKA 140
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 139
+N G + LH A G + + L+ A I+++ TPLHLAA G + +
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 140 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDG 188
LL A I+A ++ G P+H A +VA+ + A+ +LV+ K G
Sbjct: 86 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYG 133
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 540 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 599
+N G + LH A G + + L+ A I+++ TPLHLAA G + +
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 600 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKD 653
LL A I+A ++ G P+H A +VA+ + A+ +LV+ K E D
Sbjct: 86 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGEMPVD 138
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
+PL A G + VV +L+ GA N+ T +HLAA +GH +++++ KA
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSH 312
+ G LH A ++GQ +L+++
Sbjct: 96 VNEHGNVPLHYACFWGQDQVAEDLVAN 122
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 193 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 252
H A +G V+E L+ R I+ NR + TPL LAA GH ++V+ L++ A
Sbjct: 39 HWACREGRSAVVEMLIM--RGARINVMNR-GDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 253 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
N+ G +H A G +QV E++ ++ AL K G
Sbjct: 96 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 26/110 (23%)
Query: 430 EINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADL 489
++N D G +H A R G ++ L+ +G +++V ++R D
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV----------------MNRGDD- 68
Query: 490 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAF 539
T LH+AA+HGH +V+ LL A+INA ++ + L + F
Sbjct: 69 ---------TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF 109
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 18/110 (16%)
Query: 257 GFTAVHLAAQNGHNQVLEE--MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVP 314
GF+ +H A + G + V+E MR ++ +NV ++ T LH+AA G D V++LL +
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGAR-INVMNRG-DDTPLHLAASHGHRDIVQKLLQY-- 89
Query: 315 GTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR-LLLNSAGVQV 363
K+D +E G PLH A + G + V L+ N A V +
Sbjct: 90 ---KADINAV--------NEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 7/227 (3%)
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 120
A ++G + C L+ + + T LH AA+N DL ++ + A V +
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
TPLH A G L + L+ GA D +G IH+AAQ + +L A
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA-YLIAKGQD 134
Query: 181 VTATTKDGNTCAHIAAMQG-SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 239
V ++G T AA + SV L+ F+ S ++ ++ + T L A G+ V
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS--VNLGDKYHKNTALHWAVLAGNTTV 192
Query: 240 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV---LEEMRSSKALN 283
+ +L++AGA+ +N G +A+ LA Q + + L+E R +K +
Sbjct: 193 ISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 10/181 (5%)
Query: 356 LNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATH 415
L AG V +EN LH A + +V +S+ A + Q T LH A
Sbjct: 28 LVEAGYDVRQPDKEN-VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ 86
Query: 416 GHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNN----- 470
GHL MV L+ GA+ + D G IH AA++GH I+ L+ KG+ VD+ N
Sbjct: 87 GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
Query: 471 ----LACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINAT 526
V LLL+ + + T LH A G+ ++ +LL GA ++A
Sbjct: 147 MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ 206
Query: 527 D 527
+
Sbjct: 207 N 207
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 28/222 (12%)
Query: 412 AATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNL 471
A +G + L+ G ++ DK +H AA + ++ + KG VD +L
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 472 AC---------GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAE 522
GH+++V L+ AD D G +C+H+AA GH +V L+ +G +
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 523 INATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYA-DLCRFLVHDHAAVIDILTLRK 581
++ D+ G T L AA ++ D R L+ + +V K
Sbjct: 135 VDMMDQN-----------------GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 177
Query: 582 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQ 623
T LH A AG V LLL+ GA++DA + +G+ + +A Q
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
Query: 23 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINS 82
TPL A +GH+ +V ++ A + D EG S +HLAA+ G+ + L+ ++
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Query: 83 KSRVGRTALHLAAMNGYA-DLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 141
+ G T L AA ++ D R L+ + +V K T LH A AG V LLL
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197
Query: 142 DLGASIDATDDQGQKPIHVAAQ 163
+ GA++DA + +G+ + +A Q
Sbjct: 198 EAGANVDAQNIKGESALDLAKQ 219
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 19/226 (8%)
Query: 202 GVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDE--NKTGFT 259
G+ E + +G + T L AA ++V+ + GA D+ T
Sbjct: 20 GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA-IVDQLGGDLNST 78
Query: 260 AVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKS 319
+H A + GH ++ ++ A G + +H+AA FG V L++
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV--- 135
Query: 320 DPPTGASFLGELGSESGMTPLHLAAYSGNE-NVVRLLLNSAGVQVDAQTQENGYNPLHLA 378
++ ++GMTPL AAY + + RLLL + V V+ + + LH A
Sbjct: 136 ----------DMMDQNGMTPLMWAAYRTHSVDPTRLLL-TFNVSVNLGDKYHKNTALHWA 184
Query: 379 CFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
G+ TV+ LLL A+ + + + G++ L +A ++ M+ L
Sbjct: 185 VLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVWMINHL 229
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 8/132 (6%)
Query: 343 AAYSGNENVVRLLL-NSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSA 401
AA +G ++ VR+L+ N A D G +PLHLA GH + +LL RA +
Sbjct: 9 AARAGQDDEVRILMANGAPFTTDWL----GTSPLHLAAQYGHFSTTEVLL-RAGVSRDAR 63
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
K +T LH+AA+ GH +VEVLL GA++NA D ++H A + H ++ L++ G
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123
Query: 462 EKVDVTTNNLAC 473
DV T + C
Sbjct: 124 --ADVHTQSKFC 133
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A D G S LHLAA++G+ + LL ++++
Sbjct: 6 LLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 144
+V RT LH+AA G+A++ L+ H A ++ + K T LH A E +V +LL+ G
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLL-KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123
Query: 145 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
A + + ++ N ++A+I
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 44/178 (24%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L AA G V +L+ GA TD G +H AA+YGH LL+ G
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
D T K +T LH+AA+ GH +VEVLL GA++N
Sbjct: 61 DART--------------------------KVDRTPLHMAASEGHANIVEVLLKHGADVN 94
Query: 525 ATD----------------KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
A D +V + L+ + A ++++S+ +TA ++ NG DL L
Sbjct: 95 AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA TD G P+H+AAQ ++ LRA S A TK
Sbjct: 9 AARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKV 66
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
T H+AA +G ++E L+K ++A++ + + T L A E H VV +L+K G
Sbjct: 67 DRTPLHMAASEGHANIVEVLLK--HGADVNAKDML-KMTALHWATEHNHQEVVELLIKYG 123
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
A ++K TA ++ NG+ + E
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAE 150
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 18/137 (13%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
G + LH+AA +GH EVLL G +A +++V RT LH+AA
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDA-----------------RTKVDRTPLHMAAS 76
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
G+A++ L+ H A ++ + K T LH A E +V +LL+ GA + +
Sbjct: 77 EGHANIVEVLL-KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKT 135
Query: 617 PIHVAAQNNFPEVAQIF 633
++ N ++A+I
Sbjct: 136 AFDISIDNGNEDLAEIL 152
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ +T + TPL +A + GH +V +L + A V+ D +ALH A EH + +V + L+
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
+ A ++++S+ +TA ++ NG DL L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 20 IGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAF 79
+G +PL +A GH +L D + R+ LH+AA G+ + + LL H A
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFLV 107
+N+K + TALH A + + ++ L+
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLI 120
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
+PL LAA+ GH + VL++AG S K T +H+AA GH ++E + A
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 345
L +TALH A + V L+ + +D T + F T ++
Sbjct: 96 KDMLKMTALHWATEHNHQEVVELLIKY-----GADVHTQSKFC--------KTAFDISID 142
Query: 346 SGNENVVRLL 355
+GNE++ +L
Sbjct: 143 NGNEDLAEIL 152
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 546 VGRTALHLAAMNGYADLCRFLVHDHAAVI-DILTLRKQTPLHLAAEAGQLQVCKLLLDLG 604
+G + LHLAA G+ L+ A V D T +TPLH+AA G + ++LL G
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Query: 605 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
A ++A D +H A ++N EV ++ ++
Sbjct: 91 ADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA T + G + +HLAAQ GH E + + K+
Sbjct: 9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 291 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 350
T LH+AA G A+ V LL H D MT LH A ++
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLK-------------MTALHWATEHNHQE 114
Query: 351 VVRLLLNSAGVQVDAQTQ 368
VV LL+ G V Q++
Sbjct: 115 VVELLIKY-GADVHTQSK 131
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 588 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 636
AA AGQ ++L+ GA TD G P+H+AAQ ++ LRA
Sbjct: 9 AARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRA 56
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 14/201 (6%)
Query: 335 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRA 394
S +P+H AA G++ +R L+ S G V+ T ++ +PLH AC GGH++ V +LL
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLI-SQGWAVNIITADH-VSPLHEACLGGHLSCVKILLKHG 59
Query: 395 ADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGII 454
A + + T L A G V +LL GA + + A IH AAR GHV +
Sbjct: 60 AQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECV 117
Query: 455 NTLLQKGEKVDVTTNN------LAC--GHVTVVGLLLSRAADLLQSADKNGKTCLHIAAT 506
N+L+ G +D ++ LAC V LL AD+ Q K + LH A
Sbjct: 118 NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG--KGQDSPLHAVAR 175
Query: 507 HGHLQMVEVLLGQGAEINATD 527
++ +L+ GA+ A +
Sbjct: 176 TASEELACLLMDFGADTQAKN 196
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 106/244 (43%), Gaps = 35/244 (14%)
Query: 409 LHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTT 468
+H AA HGH + L+ QG +N +H A GH+ + LL+ G +V+ T
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 469 --------NNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 520
N G V LLL A + +D + +H AA GH++ V L+ G
Sbjct: 67 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVECVNSLIAYG 124
Query: 521 AEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 580
I+ HK S +G T L+LA N + L+ A D+ +
Sbjct: 125 GNID-----------HKI-----SHLG-TPLYLACENQQRACVKKLLESGA---DVNQGK 164
Query: 581 KQ-TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH-- 637
Q +PLH A ++ LL+D GA A + +G++P+ + + +AQ+FL
Sbjct: 165 GQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGP 222
Query: 638 PSLV 641
PSL+
Sbjct: 223 PSLM 226
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 9/171 (5%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N T+ TPL AC G + VN +L + A V + + S +H AA G+++ ++L
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSL 120
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ-TPLHLAAEAG 132
+ + I+ K T L+LA N + L+ A D+ + Q +PLH A
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA---DVNQGKGQDSPLHAVARTA 177
Query: 133 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH--PSLV 181
++ LL+D GA A + +G++P+ + + +AQ+FL PSL+
Sbjct: 178 SEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLM 226
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 13 ALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDA 72
A+N T+ +PL AC GH+ V +L + A+V+ + + L A G +
Sbjct: 28 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 87
Query: 73 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 132
LL H A + +S + + +H AA G+ + L+ + ID TPL+LA E
Sbjct: 88 LLQHGASVQPESDLA-SPIHEAARRGHVECVNSLI-AYGGNIDHKISHLGTPLYLACENQ 145
Query: 133 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 174
Q K LL+ GA ++ Q P+H A+ E+A + +
Sbjct: 146 QRACVKKLLESGADVNQGKGQ-DSPLHAVARTASEELACLLM 186
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Query: 22 WTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFIN 81
W+P+ A GH + +++ V++ + S LH A G+L LL H A +N
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 82 SKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 141
+ T L A ++G D L+ A+V L +P+H AA G ++ L+
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVECVNSLI 121
Query: 142 DLGASIDATDDQGQKPIHVAAQNN 165
G +ID P+++A +N
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQ 145
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 9/185 (4%)
Query: 89 TALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 148
+ +H AA++G+ R L+ AV +I+T +PLH A G L K+LL GA ++
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 149 ATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM 208
P+ A + + + L+ S+ + D + H AA +G V + L+
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES--DLASPIHEAARRGHVECVNSLI 121
Query: 209 KFDRSGVISARNRVTE-ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN 267
+ G I ++++ TPL LA E V+ L+++GA ++ K + +H A+
Sbjct: 122 AY--GGNID--HKISHLGTPLYLACENQQRACVKKLLESGAD-VNQGKGQDSPLHAVART 176
Query: 268 GHNQV 272
++
Sbjct: 177 ASEEL 181
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 94/228 (41%), Gaps = 32/228 (14%)
Query: 222 VTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 281
+++ +P+ AA GH +R L+ G + + +H A GH + K
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGH------LSCVKI 54
Query: 282 LNVYSKKL-GVTA-----LHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 335
L + ++ GVTA L A G D V LL H GAS + ES
Sbjct: 55 LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH-----------GAS----VQPES 99
Query: 336 GM-TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRA 394
+ +P+H AA G+ V L+ G +D + G PL+LAC V LL
Sbjct: 100 DLASPIHEAARRGHVECVNSLIAYGG-NIDHKISHLG-TPLYLACENQQRACVKKLLESG 157
Query: 395 ADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSI 442
AD+ Q K + LH A ++ +L+ GA+ A + G R +
Sbjct: 158 ADVNQG--KGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPV 203
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 6/176 (3%)
Query: 123 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 182
+P+H AA G + L+ G +++ P+H A +I L+ H + V
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVN 63
Query: 183 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 242
T D +T A + GS + L++ S + A+P+ AA GH V
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHG----ASVQPESDLASPIHEAARRGHVECVNS 119
Query: 243 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAA 298
L+ G + + T ++LA +N ++++ S A +V K + LH A
Sbjct: 120 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA-DVNQGKGQDSPLHAVA 174
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 28/216 (12%)
Query: 374 PLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN- 432
PLH AC V LL LL D++G+ LH + + ++ LL + +N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 433 --ATDKGGARSIHTAARYGHVGIINTLLQKGEKVD---VTTNNLACGHVTV------VGL 481
D G H A G++ ++ +L + K D +T + C H+ V V
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 482 LLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFIN 541
L ++ DK + LH AA+ G L+++E+L G G K+ +N
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG----------------KSAVN 168
Query: 542 SKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDIL 577
+ + G T L A G+ D LV + A D++
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 28/198 (14%)
Query: 333 SESGMTPLHLA-AYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
+ G PLH + ++ +E LL V +D ++G+ P H+AC G++ VV L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 392 SRAADL-LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
R L G TCLH+A ++ + L+ GA + DK +H AA G
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 451 VGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHL 510
+ +I L CG L ++A + DK G T L A GH
Sbjct: 153 LKLIELL---------------CG--------LGKSA--VNWQDKQGWTPLFHALAEGHG 187
Query: 511 QMVEVLLGQ-GAEINATD 527
+L+ + GAE + D
Sbjct: 188 DAAVLLVEKYGAEYDLVD 205
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 6/158 (3%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDV--FDQEGRSALHLAAEHGYLKVCDALLTHKA 78
GWTP IAC+ G++E+V ++ + + D+ +G + LHLA + +V L+ + A
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 79 FINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCK 138
+ K + + LH AA G L L + ++ + TPL A G
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 139 LLLD-LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
LL++ GA D D++G K VA +V + FL
Sbjct: 192 LLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 226
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 478 VVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHK 537
V LL S+ + LLQ D++G+ LH + + ++ LL + +N D D+
Sbjct: 18 VQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS----- 71
Query: 538 AFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAEAGQLQ 595
G T H+A G ++ + L +D D+ + Q T LHLA +
Sbjct: 72 ---------GWTPFHIACSVGNLEVVKSL-YDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 596 VCKLLLDLGASIDATDDQGQKPIHVAA 622
V + L++ GAS+ D Q P+H AA
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAA 148
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 11/147 (7%)
Query: 24 PLLIACNRGHMELVNTMLNNHARVDVF---DQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
PL AC V +L H++ + DQ+GR LH + ++ LL+ +
Sbjct: 5 PLHQACMENEFFKVQELL--HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 81 N---SKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAEAGQLQ 135
N G T H+A G ++ + L +D D+ + Q T LHLA +
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSL-YDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 136 VCKLLLDLGASIDATDDQGQKPIHVAA 162
V + L++ GAS+ D Q P+H AA
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAA 148
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 13 ALNKQTSIGWTPLLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLA 61
A+N Q GWTPL A GH + ++ + A D+ D +G A +A
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 28/216 (12%)
Query: 374 PLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN- 432
PLH AC V LL LL D++G+ LH + + ++ LL + +N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 433 --ATDKGGARSIHTAARYGHVGIINTLLQKGEKVD---VTTNNLACGHVTV------VGL 481
D G H A G++ ++ +L + K D +T + C H+ V V
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 482 LLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFIN 541
L ++ DK + LH AA+ G L+++E+L G G K+ +N
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG----------------KSAVN 168
Query: 542 SKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDIL 577
+ + G T L A G+ D LV + A D++
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 28/198 (14%)
Query: 333 SESGMTPLHLA-AYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
+ G PLH + ++ +E LL V +D ++G+ P H+AC G++ VV L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 392 SRAADL-LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
R L G TCLH+A ++ + L+ GA + DK +H AA G
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 451 VGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHL 510
+ +I L CG L ++A + DK G T L A GH
Sbjct: 153 LKLIELL---------------CG--------LGKSA--VNWQDKQGWTPLFHALAEGHG 187
Query: 511 QMVEVLLGQ-GAEINATD 527
+L+ + GAE + D
Sbjct: 188 DAAVLLVEKYGAEYDLVD 205
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 6/158 (3%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDV--FDQEGRSALHLAAEHGYLKVCDALLTHKA 78
GWTP IAC+ G++E+V ++ + + D+ +G + LHLA + +V L+ + A
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 79 FINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCK 138
+ K + + LH AA G L L + ++ + TPL A G
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 139 LLLD-LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
LL++ GA D D++G K VA +V + FL
Sbjct: 192 LLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 226
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 478 VVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHK 537
V LL S+ + LLQ D++G+ LH + + ++ LL + +N D D+
Sbjct: 18 VQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS----- 71
Query: 538 AFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAEAGQLQ 595
G T H+A G ++ + L +D D+ + Q T LHLA +
Sbjct: 72 ---------GWTPFHIACSVGNLEVVKSL-YDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 596 VCKLLLDLGASIDATDDQGQKPIHVAA 622
V + L++ GAS+ D Q P+H AA
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAA 148
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 11/147 (7%)
Query: 24 PLLIACNRGHMELVNTMLNNHARVDVF---DQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
PL AC V +L H++ + DQ+GR LH + ++ LL+ +
Sbjct: 5 PLHQACMENEFFKVQELL--HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 81 N---SKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAEAGQLQ 135
N G T H+A G ++ + L +D D+ + Q T LHLA +
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSL-YDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 136 VCKLLLDLGASIDATDDQGQKPIHVAA 162
V + L++ GAS+ D Q P+H AA
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAA 148
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 13 ALNKQTSIGWTPLLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLA 61
A+N Q GWTPL A GH + ++ + A D+ D +G A +A
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 28/216 (12%)
Query: 374 PLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN- 432
PLH AC V LL LL D++G+ LH + + ++ LL + +N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 433 --ATDKGGARSIHTAARYGHVGIINTLLQKGEKVD---VTTNNLACGHVTV------VGL 481
D G H A G++ ++ +L + K D +T + C H+ V V
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 482 LLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFIN 541
L ++ DK + LH AA+ G L+++E+L G G K+ +N
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG----------------KSAVN 168
Query: 542 SKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDIL 577
+ + G T L A G+ D LV + A D++
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 28/198 (14%)
Query: 333 SESGMTPLHLA-AYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
+ G PLH + ++ +E LL V +D ++G+ P H+AC G++ VV L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 392 SRAADL-LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
R L G TCLH+A ++ + L+ GA + DK +H AA G
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 451 VGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHL 510
+ +I L CG L ++A + DK G T L A GH
Sbjct: 153 LKLIELL---------------CG--------LGKSA--VNWQDKQGWTPLFHALAEGHG 187
Query: 511 QMVEVLLGQ-GAEINATD 527
+L+ + GAE + D
Sbjct: 188 DAAVLLVEKYGAEYDLVD 205
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 6/158 (3%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDV--FDQEGRSALHLAAEHGYLKVCDALLTHKA 78
GWTP IAC+ G++E+V ++ + + D+ +G + LHLA + +V L+ + A
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 79 FINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCK 138
+ K + + LH AA G L L + ++ + TPL A G
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 139 LLLD-LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
LL++ GA D D++G K VA +V + FL
Sbjct: 192 LLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 226
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 478 VVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHK 537
V LL S+ + LLQ D++G+ LH + + ++ LL + +N D D+
Sbjct: 18 VQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS----- 71
Query: 538 AFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAEAGQLQ 595
G T H+A G ++ + L +D D+ + Q T LHLA +
Sbjct: 72 ---------GWTPFHIACSVGNLEVVKSL-YDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 596 VCKLLLDLGASIDATDDQGQKPIHVAA 622
V + L++ GAS+ D Q P+H AA
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAA 148
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 11/147 (7%)
Query: 24 PLLIACNRGHMELVNTMLNNHARVDVF---DQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
PL AC V +L H++ + DQ+GR LH + ++ LL+ +
Sbjct: 5 PLHQACMENEFFKVQELL--HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 81 N---SKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAEAGQLQ 135
N G T H+A G ++ + L +D D+ + Q T LHLA +
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSL-YDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 136 VCKLLLDLGASIDATDDQGQKPIHVAA 162
V + L++ GAS+ D Q P+H AA
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAA 148
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 13 ALNKQTSIGWTPLLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLA 61
A+N Q GWTPL A GH + ++ + A D+ D +G A +A
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%)
Query: 409 LHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTT 468
+H AA HGH + L+ QG +N +H A GH+ + LL+ G +V+ T
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 469 --------NNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 520
N G V LLL A + +D + +H AA GH++ V L+ G
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVECVNSLIAYG 180
Query: 521 AEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 580
I+ HK S +G T L+LA N + L+ A D+ +
Sbjct: 181 GNID-----------HKI-----SHLG-TPLYLACENQQRACVKKLLESGA---DVNQGK 220
Query: 581 KQ-TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
Q +PLH ++ LL+D GA A + +G++P+ + + +AQ+FL
Sbjct: 221 GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLE 274
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 14/201 (6%)
Query: 335 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRA 394
S +P+H AA G++ +R L+ S G V+ T ++ +PLH AC GGH++ V +LL
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLI-SQGWAVNIITADH-VSPLHEACLGGHLSCVKILLKHG 115
Query: 395 ADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGII 454
A + + T L A G V +LL GA + + A IH AAR GHV +
Sbjct: 116 AQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECV 173
Query: 455 NTLLQKGEKVDVTTNN------LACGHV--TVVGLLLSRAADLLQSADKNGKTCLHIAAT 506
N+L+ G +D ++ LAC + V LL AD+ Q K + LH
Sbjct: 174 NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG--KGQDSPLHAVVR 231
Query: 507 HGHLQMVEVLLGQGAEINATD 527
++ +L+ GA+ A +
Sbjct: 232 TASEELACLLMDFGADTQAKN 252
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N T+ TPL AC G + VN +L + A V + + S +H AA G+++ ++L
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSL 176
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ-TPLHLAAEAG 132
+ + I+ K T L+LA N + L+ A D+ + Q +PLH
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA---DVNQGKGQDSPLHAVVRTA 233
Query: 133 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
++ LL+D GA A + +G++P+ + + +AQ+FL
Sbjct: 234 SEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLE 274
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 3/162 (1%)
Query: 13 ALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDA 72
A+N T+ +PL AC GH+ V +L + A+V+ + + L A G +
Sbjct: 84 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 143
Query: 73 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 132
LL H A + +S + + +H AA G+ + L+ + ID TPL+LA E
Sbjct: 144 LLQHGASVQPESDLA-SPIHEAARRGHVECVNSLI-AYGGNIDHKISHLGTPLYLACENQ 201
Query: 133 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 174
Q K LL+ GA ++ Q P+H + E+A + +
Sbjct: 202 QRACVKKLLESGADVNQGKGQ-DSPLHAVVRTASEELACLLM 242
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 2/143 (1%)
Query: 22 WTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFIN 81
W+P+ A GH + +++ V++ + S LH A G+L LL H A +N
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 82 SKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 141
+ T L A ++G D L+ A+V L +P+H AA G ++ L+
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVECVNSLI 177
Query: 142 DLGASIDATDDQGQKPIHVAAQN 164
G +ID P+++A +N
Sbjct: 178 AYGGNIDHKISHLGTPLYLACEN 200
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 89 TALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 148
+ +H AA++G+ R L+ AV +I+T +PLH A G L K+LL GA ++
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 149 ATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM 208
P+ A + + + L+ S+ + D + H AA +G V + L+
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES--DLASPIHEAARRGHVECVNSLI 177
Query: 209 KFDRSGVISARNRVTE-ATPLQLAAEGGHANVVRVLVKAGA 248
+ G I ++++ TPL LA E V+ L+++GA
Sbjct: 178 AY--GGNID--HKISHLGTPLYLACENQQRACVKKLLESGA 214
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 104/264 (39%), Gaps = 36/264 (13%)
Query: 192 AHIAAMQGSVGVIE---ELMKFDRSGVISARNR-----VTEATPLQLAAEGGHANVVRVL 243
+H+A+M G G ++ D G+ N V++ +P+ AA GH +R L
Sbjct: 19 SHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNL 78
Query: 244 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTA-----LHVAA 298
+ G + + +H A GH ++ + L ++ GVTA L A
Sbjct: 79 ISQGWAVNIITADHVSPLHEACLGGHLSCVKIL-----LKHGAQVNGVTADWHTPLFNAC 133
Query: 299 YFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS 358
G D V LL H GAS E +P+H AA G+ V L+
Sbjct: 134 VSGSWDCVNLLLQH-----------GASVQPE---SDLASPIHEAARRGHVECVNSLIAY 179
Query: 359 AGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHL 418
G +D + G PL+LAC V LL AD+ Q K + LH
Sbjct: 180 GG-NIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQG--KGQDSPLHAVVRTASE 235
Query: 419 QMVEVLLGQGAEINATDKGGARSI 442
++ +L+ GA+ A + G R +
Sbjct: 236 ELACLLMDFGADTQAKNAEGKRPV 259
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 6/173 (3%)
Query: 123 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 182
+P+H AA G + L+ G +++ P+H A +I L+ H + V
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVN 119
Query: 183 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 242
T D +T A + GS + L++ S + A+P+ AA GH V
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHG----ASVQPESDLASPIHEAARRGHVECVNS 175
Query: 243 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALH 295
L+ G + + T ++LA +N ++++ S A +V K + LH
Sbjct: 176 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA-DVNQGKGQDSPLH 227
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 129/314 (41%), Gaps = 35/314 (11%)
Query: 347 GNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGK 406
GN N N +Q+ + + LH G + + + + +++ ++ +
Sbjct: 70 GNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYA-ITEPITRESVNIIDP--RHNR 126
Query: 407 TCLHIAATHGHLQMVEVLL--------GQGAEINATDKGG---------ARSIHTAARYG 449
T LH A++ + E L+ GA++NA D AR A
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLX 186
Query: 450 HVGIINTLLQKGEK--VDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAA-T 506
G T+ K E+ + N G V L ++ ++ D+NG T L I A
Sbjct: 187 KAGADPTIYNKSERSALHQAAANRDFG-XXVYXLNSTKLKGDIEELDRNGXTALXIVAHN 245
Query: 507 HGHLQMV--EVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCR 564
G Q+ ++L+ +GA+++ A +S+ GRTALH AA + +
Sbjct: 246 EGRDQVASAKLLVEKGAKVD---------YDGAARKDSEKYKGRTALHYAAQVSNXPIVK 296
Query: 565 FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 624
+LV + + D +TP+ LAA+ G+++V L+ GAS++A D +A N
Sbjct: 297 YLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQAN 356
Query: 625 NFPEVAQIFLRAHP 638
N + IF R P
Sbjct: 357 NHHNIVDIFDRCRP 370
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 47 VDVFDQEGRSALHLAAEH-GYLKVCDA-LLTHK---------AFINSKSRVGRTALHLAA 95
++ D+ G +AL + A + G +V A LL K A +S+ GRTALH AA
Sbjct: 228 IEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA 287
Query: 96 MNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 155
+ ++LV + + D +TP+ LAA+ G+++V L+ GAS++A D
Sbjct: 288 QVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDH 347
Query: 156 KPIHVAAQNNFPEVAQIFLRAHP 178
+A NN + IF R P
Sbjct: 348 TARQLAQANNHHNIVDIFDRCRP 370
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G T H AA + +++ L+ G + TP+ LAA+ G VV L++ G
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVG--EKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQG 336
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLE 274
AS + T TA LA N H+ +++
Sbjct: 337 ASVEAVDATDHTARQLAQANNHHNIVD 363
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 67/195 (34%), Gaps = 72/195 (36%)
Query: 224 EATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN---------------- 267
E TPL LA +V L KAGA T NK+ +A+H AA N
Sbjct: 166 ENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLK 225
Query: 268 -----------------GHNQVLEEMRSSK--------------ALNVYSKKLGVTALHV 296
HN+ +++ S+K A K G TALH
Sbjct: 226 GDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285
Query: 297 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGS------ESGMTPLHLAAYSGNEN 350
AA S+ P +GE GS E G TP+ LAA G
Sbjct: 286 AAQV------------------SNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIE 327
Query: 351 VVRLLLNSAGVQVDA 365
VV L+ G V+A
Sbjct: 328 VVXYLIQQ-GASVEA 341
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCD 71
+KQ G TP+ +A G +E+V ++ A V+ D +A LA + + + D
Sbjct: 307 DKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVD 363
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 129/256 (50%), Gaps = 29/256 (11%)
Query: 180 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSG--VISARNRVTEATPLQLAAEGGHA 237
+ T +DG+T HIA +QG++ + L+ + G + N + + TPL LA
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLP 59
Query: 238 NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA---LNVYSKKL-GVTA 293
+VVR+LV AGAS ++ G TA HLA ++ L + S A L++ ++ G+TA
Sbjct: 60 SVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 294 LHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 353
LHVA +TV+ LL GA + + +SG +PL A + + ++V+
Sbjct: 120 LHVAVNTECQETVQLLLER-----------GAD-IDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 354 LLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKN--GKTCLHI 411
LLL G V+AQ +G + LH A G + +V L+ AD S+ KN T L +
Sbjct: 168 LLLQH-GANVNAQMY-SGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMV 222
Query: 412 AATHGHLQMVEVLLGQ 427
A + +++++L G+
Sbjct: 223 ARSR---RVIDILRGK 235
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 21 GWTPLLIACNRGHM----ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTH 76
G TPL IA +G++ LVN +D+++ ++ LHLA V L+T
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 77 KAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ---TPLHLAAEAGQ 133
A + R G+TA HLA + R L+ A L R T LH+A
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 134 LQVCKLLLDLGASIDATD-DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 192
+ +LLL+ GA IDA D G+ P+ A +NN + Q+ L+ H + V A G++
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSAL 187
Query: 193 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLA 231
H A+ +G + ++ L+ RSG S+ TPL +A
Sbjct: 188 HSASGRGLLPLVRTLV---RSGADSSLKNCHNDTPLMVA 223
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 103/245 (42%), Gaps = 51/245 (20%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLLN---SAGVQVDAQTQENGYNPLHLACFGGHVTVVGLL 390
E G TPLH+A GN V L+N G ++D PLHLA +VV LL
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR-QTPLHLAVITTLPSVVRLL 65
Query: 391 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA----EINATDKGGARSIHTAA 446
++ A + + D++G+T H+A H + LL A ++ A + G ++H A
Sbjct: 66 VTAGASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA- 123
Query: 447 RYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAAT 506
+NT Q+ V LLL R AD+ K+G++ L A
Sbjct: 124 -------VNTECQE-----------------TVQLLLERGADIDAVDIKSGRSPLIHAVE 159
Query: 507 HGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
+ L MV++LL H A +N++ G +ALH A+ G L R L
Sbjct: 160 NNSLSMVQLLL-----------------QHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202
Query: 567 VHDHA 571
V A
Sbjct: 203 VRSGA 207
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 21/218 (9%)
Query: 251 TDENKTGFTAVHLAAQNG-----HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADT 305
T ++ G T +H+A G H V + + L++Y+ L T LH+A
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPSV 61
Query: 306 VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV-QVD 364
VR L++ GAS + G T HLA + +R LL+SA +D
Sbjct: 62 VRLLVT-----------AGASPMAL--DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108
Query: 365 AQTQE-NGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEV 423
+ + +G LH+A V LLL R AD+ K+G++ L A + L MV++
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 424 LLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
LL GA +NA G+ ++H+A+ G + ++ TL++ G
Sbjct: 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG 206
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 8/188 (4%)
Query: 87 GRTALHLAAMNGYADLCRFLVH---DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
G T LH+A + G LV+ +DI +QTPLHLA V +LL+
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFL-RAHPSLVT--ATTKDGNTCAHIAAMQGS 200
GAS A D GQ H+A ++ P + L A P + A DG T H+A
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 201 VGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTA 260
++ L+ +R I A + + +PL A E ++V++L++ GA+ + +G +A
Sbjct: 129 QETVQLLL--ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 186
Query: 261 VHLAAQNG 268
+H A+ G
Sbjct: 187 LHSASGRG 194
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 547 GRTALHLAAMNGYADLCRFLVH---DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 603
G T LH+A + G LV+ +DI +QTPLHLA V +LL+
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 604 GASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
GAS A D GQ H+A ++ P + L
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALL 99
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 104/238 (43%), Gaps = 43/238 (18%)
Query: 386 VVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTA 445
V+ LL++ A+L + DK G+T LH+AA + LL GA+ N+ D G +H A
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 91
Query: 446 ARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAA 505
+G+ LL+ +RA +L + +G T L +AA
Sbjct: 92 VAADAMGVFQILLR------------------------NRATNL-NARMHDGTTPLILAA 126
Query: 506 THGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRF 565
MVE L+ A+INA D NS G+TALH AA +
Sbjct: 127 RLAIEGMVEDLITADADINAAD-------------NS----GKTALHWAAAVNNTEAVNI 169
Query: 566 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQ 623
L+ HA D + +TPL LAA G + K LLD A+ + TD + P VA++
Sbjct: 170 LLMHHANR-DAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASE 226
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 106/241 (43%), Gaps = 22/241 (9%)
Query: 20 IGWTPLLIACNRG---------------HMELVNTMLNNHARVD-VFDQEGRSALHLAAE 63
+G TPL+IA RG ++++ +L A ++ D+ G ++LHLAA
Sbjct: 1 MGLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAAR 60
Query: 64 HGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQT 123
LL A NS+ GRT LH A + + L+ + A ++ T
Sbjct: 61 FARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTT 120
Query: 124 PLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTA 183
PL LAA + + L+ A I+A D+ G+ +H AA N E I L H +
Sbjct: 121 PLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ 180
Query: 184 TTKDGNTCAHIAAMQGSVGVIEELM-KFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 242
KD T +AA +GS + L+ F + +R+ P +A+E H ++VR+
Sbjct: 181 DDKD-ETPLFLAAREGSYEASKALLDNFANREITDHMDRL----PRDVASERLHHDIVRL 235
Query: 243 L 243
L
Sbjct: 236 L 236
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 7/174 (4%)
Query: 289 LGVTALHVAAYFGQA-DTVRELLSHVPGTVK--SDPPTGASFLGELGSESGMTPLHLAAY 345
+G+T L +AA G DT ++ ++ T + SD + L ++G T LHLAA
Sbjct: 1 MGLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAAR 60
Query: 346 SGNENVVRLLLNSAGVQVDAQTQEN-GYNPLHLACFGGHVTVVGLLLSRAADLLQSADKN 404
+ + LL++ DA +Q+N G PLH A + V +LL A L + +
Sbjct: 61 FARADAAKRLLDAG---ADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHD 117
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLL 458
G T L +AA MVE L+ A+INA D G ++H AA + +N LL
Sbjct: 118 GTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL 171
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 21/191 (10%)
Query: 458 LQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 517
L GE ++ ++ A V+ LL++ A+L + DK G+T LH+AA + LL
Sbjct: 16 LDTGEDIENNEDSTA----QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLL 71
Query: 518 GQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDIL 577
GA+ N S+ GRT LH A + + L+ + A ++
Sbjct: 72 DAGADAN-----------------SQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNAR 114
Query: 578 TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 637
TPL LAA + + L+ A I+A D+ G+ +H AA N E I L H
Sbjct: 115 MHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHH 174
Query: 638 PSLVTATTKEK 648
+ K++
Sbjct: 175 ANRDAQDDKDE 185
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
LN + G TPL++A +V ++ A ++ D G++ALH AA + + L
Sbjct: 111 LNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNIL 170
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L H A +++ T L LAA G + + L+ D+ A +I + P +A+E
Sbjct: 171 LMHHANRDAQDDKDETPLFLAAREGSYEASKALL-DNFANREITDHMDRLPRDVASERLH 229
Query: 134 LQVCKLL 140
+ +LL
Sbjct: 230 HDIVRLL 236
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 16/155 (10%)
Query: 243 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFG 301
L+ AGA ++ TG T +H A V + + ++A N+ ++ G T L +AA
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 302 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV 361
V +L++ +D A+ SG T LH AA N V +LL
Sbjct: 130 IEGMVEDLIT-------ADADINAA------DNSGKTALHWAAAVNNTEAVNILLMHHAN 176
Query: 362 QVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAAD 396
+ DAQ ++ PL LA G LL A+
Sbjct: 177 R-DAQDDKD-ETPLFLAAREGSYEASKALLDNFAN 209
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 114/277 (41%), Gaps = 56/277 (20%)
Query: 370 NGYNPLHLA-CFGGHV------------TVVGLLLSRAADLLQSADKNGKTCLHIAATHG 416
+G+ PL +A C GG + V+ + + A L D+ G+T LH+AA +
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68
Query: 417 HLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHV 476
+ LL A+ N D G +H A G+ L++
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR----------------- 111
Query: 477 TVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTH 536
+RA DL + +G T L +AA M+E L+ A++NA D +
Sbjct: 112 -------NRATDL-DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL------- 156
Query: 537 KAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQV 596
G++ALH AA D L+ + A D+ R++TPL LAA G +
Sbjct: 157 ----------GKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYET 205
Query: 597 CKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
K+LLD A+ D TD + P +A + ++ ++
Sbjct: 206 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 20/245 (8%)
Query: 14 LNKQTSIGWTPLLIA-CNRGHMELVNTMLNNHARV-------------DVFDQEGRSALH 59
+N + G+TPL+IA C+ G +E N+ A + D+ G +ALH
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 60 LAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTL 119
LAA + LL A N + +GRT LH A + + L+ + A +D
Sbjct: 63 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122
Query: 120 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 179
TPL LAA + + L++ A ++A DD G+ +H AA N + A + L+ +
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182
Query: 180 LVTATTKDGNTCAHIAAMQGSVGVIEELMK-FDRSGVISARNRVTEATPLQLAAEGGHAN 238
++ T +AA +GS + L+ F + +R+ P +A E H +
Sbjct: 183 KDMQNNRE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL----PRDIAQERMHHD 237
Query: 239 VVRVL 243
+VR+L
Sbjct: 238 IVRLL 242
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 2/166 (1%)
Query: 9 EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHA-RVDVFDQEGRSALHLAAEHGYL 67
E S N Q ++G TPL A + + ++ N A +D +G + L LAA
Sbjct: 78 EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 137
Query: 68 KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHL 127
+ + L+ A +N+ +G++ALH AA D L+ + A D+ R++TPL L
Sbjct: 138 GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFL 196
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
AA G + K+LLD A+ D TD + P +A + ++ ++
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 333 SESGMTPLHLAA-YSGNENVVRLLLNSAGVQVDAQTQEN-GYNPLHLACFGGHVTVVGLL 390
+G T LHLAA YS ++ RLL SA DA Q+N G PLH A V +L
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASA----DANIQDNMGRTPLHAAVSADAQGVFQIL 109
Query: 391 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
+ A L + +G T L +AA M+E L+ A++NA D G ++H AA +
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 451 VGIINTLLQKGEKVDVTTN 469
V LL+ G D+ N
Sbjct: 170 VDAAVVLLKNGANKDMQNN 188
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 61/236 (25%)
Query: 239 VVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA 297
V+ + GAS ++ ++TG TA+HLAA+
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAAR------------------------------- 66
Query: 298 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 357
+ ++D + LL AS + G TPLH A + + V ++L+
Sbjct: 67 --YSRSDAAKRLLE-------------ASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 358 SAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQS-ADKN-----GKTCLHI 411
+ +DA+ + G PL LA + V G+L DL+ S AD N GK+ LH
Sbjct: 112 NRATDLDARMHD-GTTPLILAA---RLAVEGML----EDLINSHADVNAVDDLGKSALHW 163
Query: 412 AATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVT 467
AA ++ VLL GA + + + AAR G LL D+T
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 219
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 114/277 (41%), Gaps = 56/277 (20%)
Query: 370 NGYNPLHLA-CFGGHV------------TVVGLLLSRAADLLQSADKNGKTCLHIAATHG 416
+G+ PL +A C GG + V+ + + A L D+ G+T LH+AA +
Sbjct: 10 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 69
Query: 417 HLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHV 476
+ LL A+ N D G +H A G+ L++
Sbjct: 70 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR----------------- 112
Query: 477 TVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTH 536
+RA DL + +G T L +AA M+E L+ A++NA D +
Sbjct: 113 -------NRATDL-DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL------- 157
Query: 537 KAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQV 596
G++ALH AA D L+ + A D+ R++TPL LAA G +
Sbjct: 158 ----------GKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYET 206
Query: 597 CKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
K+LLD A+ D TD + P +A + ++ ++
Sbjct: 207 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 243
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 20/245 (8%)
Query: 14 LNKQTSIGWTPLLIA-CNRGHMELVNTMLNNHARV-------------DVFDQEGRSALH 59
+N + G+TPL+IA C+ G +E N+ A + D+ G +ALH
Sbjct: 4 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 63
Query: 60 LAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTL 119
LAA + LL A N + +GRT LH A + + L+ + A +D
Sbjct: 64 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 123
Query: 120 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 179
TPL LAA + + L++ A ++A DD G+ +H AA N + A + L+ +
Sbjct: 124 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 183
Query: 180 LVTATTKDGNTCAHIAAMQGSVGVIEELMK-FDRSGVISARNRVTEATPLQLAAEGGHAN 238
++ T +AA +GS + L+ F + +R+ P +A E H +
Sbjct: 184 KDMQNNRE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL----PRDIAQERMHHD 238
Query: 239 VVRVL 243
+VR+L
Sbjct: 239 IVRLL 243
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 333 SESGMTPLHLAA-YSGNENVVRLLLNSAGVQVDAQTQEN-GYNPLHLACFGGHVTVVGLL 390
+G T LHLAA YS ++ RLL SA DA Q+N G PLH A V +L
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASA----DANIQDNMGRTPLHAAVSADAQGVFQIL 110
Query: 391 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
+ A L + +G T L +AA M+E L+ A++NA D G ++H AA +
Sbjct: 111 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 170
Query: 451 VGIINTLLQKGEKVDVTTN 469
V LL+ G D+ N
Sbjct: 171 VDAAVVLLKNGANKDMQNN 189
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 61/236 (25%)
Query: 239 VVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA 297
V+ + GAS ++ ++TG TA+HLAA+
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAAR------------------------------- 67
Query: 298 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 357
+ ++D + LL AS + G TPLH A + + V ++L+
Sbjct: 68 --YSRSDAAKRLLE-------------ASADANIQDNMGRTPLHAAVSADAQGVFQILIR 112
Query: 358 SAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQS-ADKN-----GKTCLHI 411
+ +DA+ + G PL LA + V G+L DL+ S AD N GK+ LH
Sbjct: 113 NRATDLDARMHD-GTTPLILAA---RLAVEGML----EDLINSHADVNAVDDLGKSALHW 164
Query: 412 AATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVT 467
AA ++ VLL GA + + + AAR G LL D+T
Sbjct: 165 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 220
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 113/277 (40%), Gaps = 56/277 (20%)
Query: 370 NGYNPLHLA-CFGGHV------------TVVGLLLSRAADLLQSADKNGKTCLHIAATHG 416
+G+ PL +A C GG + V+ + + A L D+ G T LH+AA +
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYS 68
Query: 417 HLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHV 476
+ LL A+ N D G +H A G+ L++
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR----------------- 111
Query: 477 TVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTH 536
+RA DL + +G T L +AA M+E L+ A++NA D +
Sbjct: 112 -------NRATDL-DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL------- 156
Query: 537 KAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQV 596
G++ALH AA D L+ + A D+ R++TPL LAA G +
Sbjct: 157 ----------GKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYET 205
Query: 597 CKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
K+LLD A+ D TD + P +A + ++ ++
Sbjct: 206 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 20/245 (8%)
Query: 14 LNKQTSIGWTPLLIA-CNRGHMELVNTMLNNHARV-------------DVFDQEGRSALH 59
+N + G+TPL+IA C+ G +E N+ A + D+ G +ALH
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALH 62
Query: 60 LAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTL 119
LAA + LL A N + +GRT LH A + + L+ + A +D
Sbjct: 63 LAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122
Query: 120 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 179
TPL LAA + + L++ A ++A DD G+ +H AA N + A + L+ +
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182
Query: 180 LVTATTKDGNTCAHIAAMQGSVGVIEELMK-FDRSGVISARNRVTEATPLQLAAEGGHAN 238
++ T +AA +GS + L+ F + +R+ P +A E H +
Sbjct: 183 KDMQNNRE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL----PRDIAQERMHHD 237
Query: 239 VVRVL 243
+VR+L
Sbjct: 238 IVRLL 242
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 2/166 (1%)
Query: 9 EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHA-RVDVFDQEGRSALHLAAEHGYL 67
E S N Q ++G TPL A + + ++ N A +D +G + L LAA
Sbjct: 78 EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 137
Query: 68 KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHL 127
+ + L+ A +N+ +G++ALH AA D L+ + A D+ R++TPL L
Sbjct: 138 GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFL 196
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
AA G + K+LLD A+ D TD + P +A + ++ ++
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 333 SESGMTPLHLAA-YSGNENVVRLLLNSAGVQVDAQTQEN-GYNPLHLACFGGHVTVVGLL 390
+G T LHLAA YS ++ RLL SA DA Q+N G PLH A V +L
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASA----DANIQDNMGRTPLHAAVSADAQGVFQIL 109
Query: 391 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
+ A L + +G T L +AA M+E L+ A++NA D G ++H AA +
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 451 VGIINTLLQKGEKVDVTTN 469
V LL+ G D+ N
Sbjct: 170 VDAAVVLLKNGANKDMQNN 188
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 92/236 (38%), Gaps = 61/236 (25%)
Query: 239 VVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA 297
V+ + GAS ++ ++TG TA+HLAA YS+
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAA------------------AYSR---------- 69
Query: 298 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 357
+D + LL AS + G TPLH A + + V ++L+
Sbjct: 70 -----SDAAKRLLE-------------ASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 358 SAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQS-ADKN-----GKTCLHI 411
+ +DA+ + G PL LA + V G+L DL+ S AD N GK+ LH
Sbjct: 112 NRATDLDARMHD-GTTPLILAA---RLAVEGML----EDLINSHADVNAVDDLGKSALHW 163
Query: 412 AATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVT 467
AA ++ VLL GA + + + AAR G LL D+T
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 219
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G T L IA +G + V +L N + +V D G + LH A HG+LKV + LL HKA +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAA--VIDILTLR 120
N+ + LH AA NG+ D+ + L+ A+ ++I LR
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLR 111
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 363 VDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVE 422
+D T G LH+A G + V LL +D D G T LH A HGHL++VE
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVE 60
Query: 423 VLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
+LL A +N T +H AA+ GHV I+ LL G
Sbjct: 61 LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 18/122 (14%)
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
G+T LHIA+ G + VE LL G++ N D G T LH A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKD-----------------HAGWTPLHEACN 52
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
+G+ + L+ H A+++ + +PLH AA+ G + + KLLL GAS +A + G +
Sbjct: 53 HGHLKVVELLLQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLR 111
Query: 617 PI 618
P+
Sbjct: 112 PV 113
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Query: 47 VDVF-DQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRF 105
+D F + G + LH+A+ G + + LL + + N K G T LH A +G+ +
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 106 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 158
L+ H A+++ + +PLH AA+ G + + KLLL GAS +A + G +P+
Sbjct: 62 LLQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 26/123 (21%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
G+T LHIA+ G + VE LL G++ N D G +H A +GH+ ++ LLQ V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+ T + LH AA +GH+ +V++LL GA N
Sbjct: 70 NTTG--------------------------YQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Query: 525 ATD 527
A +
Sbjct: 104 AVN 106
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N + GWTPL ACN GH+++V +L + A V+ + S LH AA++G++ + LL
Sbjct: 37 NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Query: 75 THKAFINSKSRVG 87
++ A N+ + G
Sbjct: 97 SYGASRNAVNIFG 109
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 27/121 (22%)
Query: 281 ALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 340
++ ++ G T LH+A+ G +V LL + SDP + +G TPL
Sbjct: 1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQN-----GSDP--------NVKDHAGWTPL 47
Query: 341 HLAAYSGNENVVRLLL------NSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRA 394
H A G+ VV LLL N+ G Q D+ PLH A GHV +V LLLS
Sbjct: 48 HEACNHGHLKVVELLLQHKALVNTTGYQNDS--------PLHDAAKNGHVDIVKLLLSYG 99
Query: 395 A 395
A
Sbjct: 100 A 100
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 20/109 (18%)
Query: 474 GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDAL 533
G + V LL +D D G T LH A HGHL++VE+ L
Sbjct: 21 GDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVEL-----------------L 62
Query: 534 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAA--VIDILTLR 580
L HKA +N+ + LH AA NG+ D+ + L+ A+ ++I LR
Sbjct: 63 LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLR 111
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 87 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 146
G T LH+A++ G +L+ + + ++ TPLH A G L+V +LLL A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 147 IDATDDQGQKPIHVAAQNNFPEVAQIFL 174
++ T Q P+H AA+N ++ ++ L
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 547 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
G T LH+A++ G +L+ + + ++ TPLH A G L+V +LLL A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 607 IDATDDQGQKPIHVAAQNNFPEVAQIFL 634
++ T Q P+H AA+N ++ ++ L
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 120 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 179
R +T LH+A+ G + + LL G+ + D G P+H A + +V ++ L+ H +
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKA 67
Query: 180 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 213
LV T ++ H AA G V +++ L+ + S
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
T L +A+ G V L++ G+ ++ G+T +H A +GH +V+E + KAL
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSH 312
+ + LH AA G D V+ LLS+
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 580 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 639
R +T LH+A+ G + + LL G+ + D G P+H A + +V ++ L+ H +
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKA 67
Query: 640 LVTATTKEKERAKDLIAAGKHCE 662
LV T + + A H +
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVD 90
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 104/253 (41%), Gaps = 43/253 (16%)
Query: 381 GGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGAR 440
G V+ + + A L D+ G+T LH+AA + + LL A+ N D G
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 441 SIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTC 500
+H A G+ L++ +RA DL + +G T
Sbjct: 61 PLHAAVSADAQGVFQILIR------------------------NRATDL-DARMHDGTTP 95
Query: 501 LHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYA 560
L +AA M+E L+ A++NA D + G++ALH AA
Sbjct: 96 LILAARLAVEGMLEDLINSHADVNAVDDL-----------------GKSALHWAAAVNNV 138
Query: 561 DLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHV 620
D L+ + A D+ R++TPL LAA G + K+LLD A+ D TD + P +
Sbjct: 139 DAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197
Query: 621 AAQNNFPEVAQIF 633
A + ++ ++
Sbjct: 198 AQERMHHDIVRLL 210
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 2/166 (1%)
Query: 9 EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHA-RVDVFDQEGRSALHLAAEHGYL 67
E S N Q ++G TPL A + + ++ N A +D +G + L LAA
Sbjct: 46 EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 105
Query: 68 KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHL 127
+ + L+ A +N+ +G++ALH AA D L+ + A D+ R++TPL L
Sbjct: 106 GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFL 164
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
AA G + K+LLD A+ D TD + P +A + ++ ++
Sbjct: 165 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 6/194 (3%)
Query: 51 DQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDH 110
D+ G +ALHLAA + LL A N + +GRT LH A + + L+ +
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 111 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 170
A +D TPL LAA + + L++ A ++A DD G+ +H AA N + A
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 141
Query: 171 QIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK-FDRSGVISARNRVTEATPLQ 229
+ L+ + ++ T +AA +GS + L+ F + +R+ P
Sbjct: 142 VVLLKNGANKDMQNNRE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL----PRD 196
Query: 230 LAAEGGHANVVRVL 243
+A E H ++VR+L
Sbjct: 197 IAQERMHHDIVRLL 210
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 87/206 (42%), Gaps = 33/206 (16%)
Query: 324 GASFLGELGSESGMTPLHLAA-YSGNENVVRLLLNSAGVQVDAQTQEN-GYNPLHLACFG 381
GAS + +G T LHLAA YS ++ RLL SA DA Q+N G PLH A
Sbjct: 14 GASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASA----DANIQDNMGRTPLHAAVSA 68
Query: 382 GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARS 441
V +L+ A L + +G T L +AA M+E L+ A++NA D G +
Sbjct: 69 DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128
Query: 442 IHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCL 501
+H AA +V LL+ G D+ N +T L
Sbjct: 129 LHWAAAVNNVDAAVVLLKNGANKDMQNN--------------------------REETPL 162
Query: 502 HIAATHGHLQMVEVLLGQGAEINATD 527
+AA G + +VLL A + TD
Sbjct: 163 FLAAREGSYETAKVLLDHFANRDITD 188
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 8/187 (4%)
Query: 69 VCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLA 128
+ D + + N R G TALHLAA +D + L+ + +A +I +TPLH A
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAA 65
Query: 129 AEAGQLQVCKLLL-DLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
A V ++L+ + +DA G P+ +AA+ + + + +H V A
Sbjct: 66 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDL 124
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK-- 245
G + H AA +V L+K +G E TPL LAA G +VL+
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLK---NGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181
Query: 246 AGASCTD 252
A TD
Sbjct: 182 ANRDITD 188
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 61/236 (25%)
Query: 239 VVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA 297
V+ + GAS ++ ++TG TA+HLAA+
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAAR------------------------------- 34
Query: 298 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 357
+ ++D + LL AS + G TPLH A + + V ++L+
Sbjct: 35 --YSRSDAAKRLLE-------------ASADANIQDNMGRTPLHAAVSADAQGVFQILIR 79
Query: 358 SAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQS-ADKN-----GKTCLHI 411
+ +DA+ + G PL LA + V G+L DL+ S AD N GK+ LH
Sbjct: 80 NRATDLDARMHD-GTTPLILAA---RLAVEGML----EDLINSHADVNAVDDLGKSALHW 131
Query: 412 AATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVT 467
AA ++ VLL GA + + + AAR G LL D+T
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 187
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 17/192 (8%)
Query: 167 PEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEAT 226
P V F+ SL T + G T H+AA + L++ I T
Sbjct: 4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN---MGRT 60
Query: 227 PLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
PL A V ++L++ A+ D G T + LAA+ +LE++ +S A
Sbjct: 61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 345
LG +ALH AA D LL GA+ ++ + TPL LAA
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLK-----------NGAN--KDMQNNREETPLFLAAR 167
Query: 346 SGNENVVRLLLN 357
G+ ++LL+
Sbjct: 168 EGSYETAKVLLD 179
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 30/197 (15%)
Query: 327 FLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTV 386
++ + +G T LH + N VV+ LL+S +VD Q + GY+P+ L T
Sbjct: 102 YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRA-GYSPIMLTALATLKTQ 160
Query: 387 ----VGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSI 442
L L R ++ A + G+T L +A +HG + +V+ LL A++N D G+ ++
Sbjct: 161 DDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL 220
Query: 443 HTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLH 502
A +GH I GLLL+ + + D++G T L
Sbjct: 221 MCACEHGHKEI-------------------------AGLLLAVPSCDISLTDRDGSTALM 255
Query: 503 IAATHGHLQMVEVLLGQ 519
+A G ++ +L +
Sbjct: 256 VALDAGQSEIASMLYSR 272
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 37/200 (18%)
Query: 401 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQK 460
AD NG T LH + +H + +V+ LL G + DK R G+ I+ T L
Sbjct: 107 ADSNGNTALHYSVSHANFPVVQQLLDSG--VCKVDKQN--------RAGYSPIMLTALAT 156
Query: 461 GEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 520
+ D + V L L R ++ A + G+T L +A +HG + +V+ LL
Sbjct: 157 LKTQD---------DIETV-LQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACE 206
Query: 521 AEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 580
A++N D G TAL A +G+ ++ L+ + I +
Sbjct: 207 ADVNVQDDD-----------------GSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD 249
Query: 581 KQTPLHLAAEAGQLQVCKLL 600
T L +A +AGQ ++ +L
Sbjct: 250 GSTALMVALDAGQSEIASML 269
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 15/159 (9%)
Query: 47 VDVFDQEGRSALHLAAEHGYLKVCDALLTHKAF-INSKSRVGRTALHLAAMNGYADLCRF 105
V++ D G +ALH + H V LL ++ ++R G + + L A+
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLK----- 158
Query: 106 LVHDHAAVIDILTLRK---------QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 156
D V+ + L QT L LA G++ V K LL A ++ DD G
Sbjct: 159 TQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGST 218
Query: 157 PIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIA 195
+ A ++ E+A + L ++ T +DG+T +A
Sbjct: 219 ALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA 257
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 12/148 (8%)
Query: 1 MLEQMSGTEISKALNKQTSIGWTPLLIAC-----NRGHMELVNTML---NNHARVDVFDQ 52
+++Q+ + + K ++KQ G++P+++ + +E V + N +A+ Q
Sbjct: 126 VVQQLLDSGVCK-VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKAS---Q 181
Query: 53 EGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAA 112
G++AL LA HG + V ALL +A +N + G TAL A +G+ ++ L+ +
Sbjct: 182 AGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSC 241
Query: 113 VIDILTLRKQTPLHLAAEAGQLQVCKLL 140
I + T L +A +AGQ ++ +L
Sbjct: 242 DISLTDRDGSTALMVALDAGQSEIASML 269
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 30/168 (17%)
Query: 493 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALH 552
AD NG T LH + +H + +V+ LL G VC ++ ++R G + +
Sbjct: 107 ADSNGNTALHYSVSHANFPVVQQLLDSG--------VCK--------VDKQNRAGYSPIM 150
Query: 553 LAAMNGYADLCRFLVHDHAAVIDILTLRK---------QTPLHLAAEAGQLQVCKLLLDL 603
L A+ D V+ + L QT L LA G++ V K LL
Sbjct: 151 LTALATLK-----TQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC 205
Query: 604 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERA 651
A ++ DD G + A ++ E+A + L ++ T ++ A
Sbjct: 206 EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTA 253
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 23 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAF-IN 81
PL A RG++ + L+N V+ D+ G +AL+ A G+ + + L T +N
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 82 SKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 141
++++G TALH AA GYAD+ + L+ A D+ + K+ A A C LL
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLA-KGARTDLRNIEKKLAFDXATNA----ACASLL 189
Query: 142 DLGASIDA 149
DA
Sbjct: 190 KKKQGTDA 197
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 333 SESGMTPLHLAAYSGNENVVRLLL-NSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
+ES PLH AA GN + +R L N GV + G L+ AC GGH +V L
Sbjct: 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVN---GLDKAGSTALYWACHGGHKDIVEXLF 126
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 432
++ L +K G T LH AA G+ +V++LL +GA +
Sbjct: 127 TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 18/149 (12%)
Query: 365 AQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
A+ E+ NPLH A G+++ + L + DK G T L+ A GH +VE L
Sbjct: 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXL 125
Query: 425 LGQ-GAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTT----------NNLAC 473
Q E+N +K G ++H AA G+ I+ LL KG + D+ N AC
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAAC 185
Query: 474 GHV------TVVGLLLSRAADLLQSADKN 496
+ T LS A D L D +
Sbjct: 186 ASLLKKKQGTDAVRTLSNAEDYLDDEDSD 214
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 212 RSGVISARNRVTEA-----TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 266
R+G+I + N V E PL AA+ G+ + +R + +K G TA++ A
Sbjct: 57 RTGLIPS-NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACH 115
Query: 267 NGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLS 311
GH ++E + + + + + KLG TALH AA+ G AD V+ LL+
Sbjct: 116 GGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 21/116 (18%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
DK G T L+ A GH +VE L Q +N ++++G TALH
Sbjct: 103 DKAGSTALYWACHGGHKDIVEXLFTQ----------------PNIELNQQNKLGDTALHA 146
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 609
AA GYAD+ + L+ A D+ + K+ A A C LL DA
Sbjct: 147 AAWKGYADIVQLLLA-KGARTDLRNIEKKLAFDXATNA----ACASLLKKKQGTDA 197
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 37/141 (26%)
Query: 409 LHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTT 468
LH AA G+L + L +N DK G+ +++ A GH I+ L T
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLF--------TQ 128
Query: 469 NNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN---- 524
N+ L +K G T LH AA G+ +V++LL +GA +
Sbjct: 129 PNIE-----------------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI 171
Query: 525 --------ATDKVCDALLTHK 537
AT+ C +LL K
Sbjct: 172 EKKLAFDXATNAACASLLKKK 192
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 6/139 (4%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
PLH AA+ G L + LD ++ D G ++ A ++ + +
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELM-KFDRSGVIS-----ARNRVTEATPLQLAAEGG 235
K G+T H AA +G +++ L+ K R+ + + A + T A L +
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKKKQ 193
Query: 236 HANVVRVLVKAGASCTDEN 254
+ VR L A DE+
Sbjct: 194 GTDAVRTLSNAEDYLDDED 212
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 13 ALNKQTSIGWTPLLIACNRGHMELVNTMLNN-HARVDVFDQEGRSALHLAAEHGYLKVCD 71
+N G T L AC+ GH ++V + + ++ ++ G +ALH AA GY +
Sbjct: 98 GVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQ 157
Query: 72 ALLTHKA 78
LL A
Sbjct: 158 LLLAKGA 164
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 331 LGSESGMTPLHLAAYSGNENVVRLLL-NSAGVQVDAQTQENGYNPLHLACFGGHVTVVGL 389
+GS+ G L AA +G ++ VR+L+ N A V A +NG PLHLA GH+ VV L
Sbjct: 2 MGSDLGKKLLE-AARAGQDDEVRILMANGADV---AAKDKNGSTPLHLAARNGHLEVVKL 57
Query: 390 LLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
LL AD + + DK GKT I+ +G+ + E+L
Sbjct: 58 LLEAGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 18/94 (19%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + DKNG T LH+AA +GHL++V++LL GA++NA DK
Sbjct: 16 AGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK---- 70
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
G+TA ++ NG DL L
Sbjct: 71 -------------FGKTAFDISIDNGNEDLAEIL 91
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V D+ G + LHLAA +G+L+V LL A +N++
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 85 RVGRTALHLAAMNGYADLCRFL 106
+ G+TA ++ NG DL L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + DKNG T LH+AA +GHL++V++LL GA++NA DK
Sbjct: 13 AARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKF 71
Query: 438 GARSIHTAARYGH 450
G + + G+
Sbjct: 72 GKTAFDISIDNGN 84
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAEAGQLQVCKLLL 141
S +G+ L AA G D R L+ + A D+ K TPLHLAA G L+V KLLL
Sbjct: 4 SDLGKKLLE-AARAGQDDEVRILMANGA---DVAAKDKNGSTPLHLAARNGHLEVVKLLL 59
Query: 142 DLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
+ GA ++A D G+ ++ N ++A+I
Sbjct: 60 EAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 544 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAEAGQLQVCKLLL 601
S +G+ L AA G D R L+ + A D+ K TPLHLAA G L+V KLLL
Sbjct: 4 SDLGKKLLE-AARAGQDDEVRILMANGA---DVAAKDKNGSTPLHLAARNGHLEVVKLLL 59
Query: 602 DLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
+ GA ++A D G+ ++ N ++A+I
Sbjct: 60 EAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L AA G V +L+ GA++ A DK G+ +H AAR GH+ ++ LL+ G V
Sbjct: 7 GKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 516
+ DK GKT I+ +G+ + E+L
Sbjct: 66 NAQ--------------------------DKFGKTAFDISIDNGNEDLAEIL 91
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA ++K G T +HLAA+NGH +V++ + + A K G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 291 VTALHVAAYFGQAD 304
TA ++ G D
Sbjct: 73 KTAFDISIDNGNED 86
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 216 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 274
++A+++ +TPL LAA GH VV++L++AGA ++K G TA ++ NG+ + E
Sbjct: 32 VAAKDK-NGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAE 89
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA + A D G P+H+AA+N EV ++ L A V A K
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKF 71
Query: 188 GNTCAHIAAMQGSVGVIE 205
G T I+ G+ + E
Sbjct: 72 GKTAFDISIDNGNEDLAE 89
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 588 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 636
AA AGQ ++L+ GA + A D G P+H+AA+N EV ++ L A
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
G TPL +A GH+E+V +L A V+ D+ G++A ++ ++G + + L
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 18/94 (19%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + DK+G T LH+AA GHL++VEVLL GA++NA DK
Sbjct: 12 AGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK---- 66
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
G+TA ++ NG DL L
Sbjct: 67 -------------FGKTAFDISIDNGNEDLAEIL 87
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
AA +G ++ VR+L+ + G V+A+ ++ GY PLHLA GH+ +V +LL AD + + D
Sbjct: 9 AARAGQDDEVRILM-ANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGAD-VNAQD 65
Query: 403 KNGKTCLHIAATHGHLQMVEVL 424
K GKT I+ +G+ + E+L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V+ D++G + LHLAA G+L++ + LL A +N++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 85 RVGRTALHLAAMNGYADLCRFL 106
+ G+TA ++ NG DL L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + DK+G T LH+AA GHL++VEVLL GA++NA DK
Sbjct: 9 AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 67
Query: 438 GARSIHTAARYGHVGIINTLLQK 460
G + + G+ + +LQK
Sbjct: 68 GKTAFDISIDNGNEDLA-EILQK 89
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L AA G V +L+ GA++NA DK G +H AAR GH+ I+ LL+ G V
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 516
+ DK GKT I+ +G+ + E+L
Sbjct: 62 --------------------------NAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA ++K G+T +HLAA+ GH +++E + + A K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 291 VTALHVAAYFGQAD 304
TA ++ G D
Sbjct: 69 KTAFDISIDNGNED 82
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 94 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 153
AA G D R L+ + A ++ TPLHLAA G L++ ++LL GA ++A D
Sbjct: 9 AARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 67
Query: 154 GQKPIHVAAQNNFPEVAQIFLRA 176
G+ ++ N ++A+I +A
Sbjct: 68 GKTAFDISIDNGNEDLAEILQKA 90
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 613
AA G D R L+ + A ++ TPLHLAA G L++ ++LL GA ++A D
Sbjct: 9 AARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 67
Query: 614 GQKPIHVAAQNNFPEVAQIFLRA 636
G+ ++ N ++A+I +A
Sbjct: 68 GKTAFDISIDNGNEDLAEILQKA 90
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 274
TPL LAA GH +V VL+KAGA ++K G TA ++ NG+ + E
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAE 85
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 65
+N + G+TPL +A GH+E+V +L A V+ D+ G++A ++ ++G
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNG 79
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 297 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 356
AA GQ D VR L+++ D + G TPLHLAA G+ +V +LL
Sbjct: 9 AARAGQDDEVRILMANGADVNAKD-------------KDGYTPLHLAAREGHLEIVEVLL 55
Query: 357 NSAGVQVDAQTQ 368
AG V+AQ +
Sbjct: 56 -KAGADVNAQDK 66
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 331 LGSESGMTPLHLAAYSGNENVVRLLL-NSAGVQVDAQTQENGYNPLHLACFGGHVTVVGL 389
+GS+ G L AA +G ++ VR+L+ N A V A +NG PLHLA GH+ VV L
Sbjct: 20 MGSDLGKKLLE-AARAGQDDEVRILMANGADV---AAKDKNGSTPLHLAARNGHLEVVKL 75
Query: 390 LLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
LL AD + + DK GKT I+ +G+ + E+L
Sbjct: 76 LLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 18/94 (19%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ AD+ + DKNG T LH+AA +GHL++V++LL GA++ A DK
Sbjct: 34 AGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK---- 88
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
G+TA ++ NG DL L
Sbjct: 89 -------------FGKTAFDISIDNGNEDLAEIL 109
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G + V ++ N A V D+ G + LHLAA +G+L+V LL A + ++
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 85 RVGRTALHLAAMNGYADLCRFL 106
+ G+TA ++ NG DL L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V +L++ AD+ + DKNG T LH+AA +GHL++V++LL GA++ A DK
Sbjct: 31 AARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89
Query: 438 GARSIHTAARYGH 450
G + + G+
Sbjct: 90 GKTAFDISIDNGN 102
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 84 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAEAGQLQVCKLLL 141
S +G+ L AA G D R L+ + A D+ K TPLHLAA G L+V KLLL
Sbjct: 22 SDLGKKLLE-AARAGQDDEVRILMANGA---DVAAKDKNGSTPLHLAARNGHLEVVKLLL 77
Query: 142 DLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
+ GA + A D G+ ++ N ++A+I
Sbjct: 78 EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 544 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ--TPLHLAAEAGQLQVCKLLL 601
S +G+ L AA G D R L+ + A D+ K TPLHLAA G L+V KLLL
Sbjct: 22 SDLGKKLLE-AARAGQDDEVRILMANGA---DVAAKDKNGSTPLHLAARNGHLEVVKLLL 77
Query: 602 DLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
+ GA + A D G+ ++ N ++A+I
Sbjct: 78 EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK L AA G V +L+ GA++ A DK G+ +H AAR GH+ ++ LL+ G V
Sbjct: 25 GKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 516
+ DK GKT I+ +G+ + E+L
Sbjct: 84 --------------------------XAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 290
AA G + VR+L+ GA ++K G T +HLAA+NGH +V++ + + A K G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 291 VTALHVAAYFGQAD 304
TA ++ G D
Sbjct: 91 KTAFDISIDNGNED 104
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 216 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 274
++A+++ +TPL LAA GH VV++L++AGA ++K G TA ++ NG+ + E
Sbjct: 50 VAAKDK-NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
AA AGQ ++L+ GA + A D G P+H+AA+N EV ++ L A V A K
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKF 89
Query: 188 GNTCAHIAAMQGSVGVIE 205
G T I+ G+ + E
Sbjct: 90 GKTAFDISIDNGNEDLAE 107
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 588 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 636
AA AGQ ++L+ GA + A D G P+H+AA+N EV ++ L A
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
G TPL +A GH+E+V +L A V D+ G++A ++ ++G + + L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 103/249 (41%), Gaps = 43/249 (17%)
Query: 385 TVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHT 444
+V+ + + A L D+ G+T LH+AA + + LL A+ D G +H
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHA 61
Query: 445 AARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIA 504
A G+ LL+ +RA DL + +G T L +A
Sbjct: 62 AVSADAQGVFQILLR------------------------NRATDL-DARMHDGTTPLILA 96
Query: 505 ATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCR 564
A M+E L+ A++NA D + G++ALH AA D
Sbjct: 97 ARLALEGMLEDLINSHADVNAVDDL-----------------GKSALHWAAAVNNVDAAV 139
Query: 565 FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 624
L+ + A D+ +++TPL LAA G + K+LLD A+ D TD + P +A +
Sbjct: 140 VLLKN-GANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 198
Query: 625 NFPEVAQIF 633
++ ++
Sbjct: 199 MHHDIVRLL 207
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 90/215 (41%), Gaps = 32/215 (14%)
Query: 315 GTVKSDPPTGASFLGELGSESGMTPLHLAA-YSGNENVVRLLLNSAGVQVDAQTQEN-GY 372
G+V SD + L +G T LHLAA YS ++ RLL SA DA Q+N G
Sbjct: 1 GSVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA----DAXIQDNMGR 56
Query: 373 NPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 432
PLH A V +LL A L + +G T L +AA M+E L+ A++N
Sbjct: 57 TPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVN 116
Query: 433 ATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQS 492
A D G ++H AA +V LL+ G D+ N
Sbjct: 117 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN----------------------- 153
Query: 493 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATD 527
+T L +AA G + +VLL A + TD
Sbjct: 154 ---KEETPLFLAAREGSYETAKVLLDHFANRDITD 185
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 281 ALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 340
+L+ + + G TALH+AA + ++D + LL AS + G TPL
Sbjct: 13 SLHNQTDRTGETALHLAARYSRSDAAKRLLE-------------ASADAXIQDNMGRTPL 59
Query: 341 HLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQS 400
H A + + V ++LL + +DA+ + G PL LA ++ L++ AD+ +
Sbjct: 60 HAAVSADAQGVFQILLRNRATDLDARMHD-GTTPLILAARLALEGMLEDLINSHADV-NA 117
Query: 401 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQK 460
D GK+ LH AA ++ VLL GA + + + AAR G LL
Sbjct: 118 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDH 177
Query: 461 GEKVDVT 467
D+T
Sbjct: 178 FANRDIT 184
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 17 QTSIGWTPLLIACNRGHMELVNTMLNNHA-RVDVFDQEGRSALHLAAEHGYLKVCDALLT 75
Q ++G TPL A + + +L N A +D +G + L LAA + + L+
Sbjct: 51 QDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLIN 110
Query: 76 HKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQ 135
A +N+ +G++ALH AA D L+ + A D+ +++TPL LAA G +
Sbjct: 111 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNKEETPLFLAAREGSYE 169
Query: 136 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
K+LLD A+ D TD + P +A + ++ ++
Sbjct: 170 TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 6/194 (3%)
Query: 51 DQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDH 110
D+ G +ALHLAA + LL A + +GRT LH A + + L+ +
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 111 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 170
A +D TPL LAA + + L++ A ++A DD G+ +H AA N + A
Sbjct: 79 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 138
Query: 171 QIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK-FDRSGVISARNRVTEATPLQ 229
+ L+ + K+ T +AA +GS + L+ F + +R+ P
Sbjct: 139 VVLLKNGANKDMQNNKE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL----PRD 193
Query: 230 LAAEGGHANVVRVL 243
+A E H ++VR+L
Sbjct: 194 IAQERMHHDIVRLL 207
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
L+ + G TPL++A ++ ++N+HA V+ D G+SALH AA + L
Sbjct: 82 LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 141
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L + A + ++ T L LAA G + + L+ DH A DI + P +A E
Sbjct: 142 LKNGANKDMQNNKEETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIAQERMH 200
Query: 134 LQVCKLL 140
+ +LL
Sbjct: 201 HDIVRLL 207
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 8/187 (4%)
Query: 69 VCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLA 128
+ D + + N R G TALHLAA +D + L+ + +A I +TPLH A
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADAXIQDNMGRTPLHAA 62
Query: 129 AEAGQLQVCKLLL-DLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
A V ++LL + +DA G P+ +AA+ + + + +H V A
Sbjct: 63 VSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHAD-VNAVDDL 121
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK-- 245
G + H AA +V L+K +G E TPL LAA G +VL+
Sbjct: 122 GKSALHWAAAVNNVDAAVVLLK---NGANKDMQNNKEETPLFLAAREGSYETAKVLLDHF 178
Query: 246 AGASCTD 252
A TD
Sbjct: 179 ANRDITD 185
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 19/159 (11%)
Query: 122 QTPLHLAAEAGQLQ-VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
++PL LAA+ +Q + KLL G + G+ +H+AA + E A + + A P L
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 181 V----TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISAR-----------NRVTEA 225
V T+ +G T HIA + +V ++ L+ R +SAR N +
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLA--RGASVSARATGSVFHYRPHNLIYYG 121
Query: 226 T-PLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHL 263
PL AA G +VR+L++ GA ++ G T +H+
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 23/162 (14%)
Query: 263 LAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDP 321
LAA+ Q L ++ + V+ + +G TALH+AA + + L+ P V +P
Sbjct: 9 LAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV-FEP 67
Query: 322 PTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN----------- 370
T + G T LH+A + N N+VR LL + G V A+ +
Sbjct: 68 MTSELY-------EGQTALHIAVINQNVNLVRALL-ARGASVSARATGSVFHYRPHNLIY 119
Query: 371 -GYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHI 411
G +PL A G +V LL+ AD +++ D G T LHI
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHI 160
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 28/216 (12%)
Query: 22 W-TPLLIACNRGHMELVNTMLNNHA-RVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAF 79
W +PLL+A ++ ++ +L V G +ALH+AA + L+ L+
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 80 I-----NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVI-----DILTLRKQT------ 123
+ S+ G+TALH+A +N +L R L+ A+V + R
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 124 -PLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHV-AAQNNFPEVAQIF--LRAH-- 177
PL AA G ++ +LL++ GA I A D G +H+ Q N Q++ L ++
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182
Query: 178 ----PSLVTATTKDGNTCAHIAAMQGSVGVIEELMK 209
SL G T +A ++G++ + + LM+
Sbjct: 183 GDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 20/171 (11%)
Query: 338 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADL 397
+PL LAA + + LL G +V Q G LH+A ++ +L+ A +L
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 398 ----LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGI 453
+ S G+T LHIA + ++ +V LL +GA ++A G
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRP--------- 114
Query: 454 INTLLQKGEKVDVTTNNLAC-GHVTVVGLLLSRAADLLQSADKNGKTCLHI 503
+ L+ GE + AC G +V LL+ AD +++ D G T LHI
Sbjct: 115 -HNLIYYGEH---PLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHI 160
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 80/216 (37%), Gaps = 60/216 (27%)
Query: 406 KTCLHIAATHGHLQMVEVLLG-QGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
++ L +AA +Q + LL +G E++ G ++H AA Y ++ L++ ++
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+ + S G+T LHIA + ++ +V LL +GA ++
Sbjct: 64 ---------------------VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVS 102
Query: 525 ATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTP 584
A R + H N L + P
Sbjct: 103 A-------------------RATGSVFHYRPHN-------------------LIYYGEHP 124
Query: 585 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHV 620
L AA G ++ +LL++ GA I A D G +H+
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 582 QTPLHLAAEAGQLQ-VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 640
++PL LAA+ +Q + KLL G + G+ +H+AA + E A + + A P L
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 641 V 641
V
Sbjct: 64 V 64
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 262 HLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDP 321
LAAQ +Q+ E +R L + G T L A+ FG+ +TVR LL +DP
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-----GADP 62
Query: 322 PTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE-NGYNPLHLACF 380
+ ++ + L LA+ G ++V LLL VD + NG PL A
Sbjct: 63 --------HILAKERESALSLASTGGYTDIVGLLLER---DVDINIYDWNGGTPLLYAVR 111
Query: 381 GGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
G HV V LL+R ADL AD +G T + +A G+ ++ +V+
Sbjct: 112 GNHVKCVEALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVI 154
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 391 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
L + +L+ D+ G T L A+ G ++ V LL GA+ + K ++ A+ G+
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 451 VGIINTLLQKGEKVDVTTNN--------LACGHVTVVGLLLSRAADLLQSADKNGKTCLH 502
I+ LL++ +++ N + HV V LL+R ADL AD +G T +
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYTPMD 140
Query: 503 IAATHGHLQMVEVL 516
+A G+ ++ +V+
Sbjct: 141 LAVALGYRKVQQVI 154
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 366 QTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 425
+ E G+ PL A G + V LL AD A K ++ L +A+T G+ +V +LL
Sbjct: 31 KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA-KERESALSLASTGGYTDIVGLLL 89
Query: 426 GQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTT 468
+ +IN D G + A R HV + LL +G D+TT
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG--ADLTT 130
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 483 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINS 542
L + +L+ D+ G T L A+ G ++ V LL GA+ I +
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD---------------PHILA 66
Query: 543 KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 602
K R +AL LA+ GY D+ L+ + I+I TPL A ++ + LL
Sbjct: 67 KER--ESALSLASTGGYTDIVGLLL-ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 603 LGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
GA + D G P+ +A + +V Q+
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 57/160 (35%), Gaps = 34/160 (21%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+NK G+TPL+ A G +E V +L A + +E SAL LA+ GY + L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L IN I TPL A
Sbjct: 89 LERDVDIN----------------------------------IYDWNGGTPLLYAVRGNH 114
Query: 134 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
++ + LL GA + D G P+ +A + +V Q+
Sbjct: 115 VKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
Query: 125 LHLAAEAGQLQVCKLLLDLGAS-IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLV 181
+H A G+L K L G + ++ D++G P+ A+ E + L A P ++
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
K+ + +A+ G ++ L++ D I N TPL A G H V
Sbjct: 66 A---KERESALSLASTGGYTDIVGLLLERDVDINIYDWNG---GTPLLYAVRGNHVKCVE 119
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQV 272
L+ GA T E +G+T + LA G+ +V
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKV 150
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 17/166 (10%)
Query: 193 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 252
H A QG + ++E ++ + V R TPL A+ G VR L++ GA
Sbjct: 7 HQLAAQGELDQLKEHLRKGDNLVNKPDER--GFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 253 ENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLS 311
K +A+ LA+ G+ ++ + +N+Y G T L A V LL+
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN-GGTPLLYAVRGNHVKCVEALLA 123
Query: 312 HVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 357
GA E ++SG TP+ LA G V +++ N
Sbjct: 124 R-----------GADLTTE--ADSGYTPMDLAVALGYRKVQQVIEN 156
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 262 HLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDP 321
LAAQ +Q+ E +R L + G T L A+ FG+ +TVR LL +DP
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-----GADP 62
Query: 322 PTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE-NGYNPLHLACF 380
+ ++ + L LA+ G ++V LLL VD + NG PL A
Sbjct: 63 --------HILAKERESALSLASTGGYTDIVGLLLER---DVDINIYDWNGGTPLLYAVH 111
Query: 381 GGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
G HV V LL+R ADL AD +G T + +A G+ ++ +V+
Sbjct: 112 GNHVKCVEALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVI 154
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 483 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINS 542
L + +L+ D+ G T L A+ G ++ V LL GA+ I +
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD---------------PHILA 66
Query: 543 KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 602
K R +AL LA+ GY D+ L+ + I+I TPL A ++ + LL
Sbjct: 67 KER--ESALSLASTGGYTDIVGLLL-ERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLA 123
Query: 603 LGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
GA + D G P+ +A + +V Q+
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 391 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
L + +L+ D+ G T L A+ G ++ V LL GA+ + K ++ A+ G+
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 451 VGIINTLLQKGEKVDVTTNN--------LACGHVTVVGLLLSRAADLLQSADKNGKTCLH 502
I+ LL++ +++ N + HV V LL+R ADL AD +G T +
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD-SGYTPMD 140
Query: 503 IAATHGHLQMVEVL 516
+A G+ ++ +V+
Sbjct: 141 LAVALGYRKVQQVI 154
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 366 QTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 425
+ E G+ PL A G + V LL AD A K ++ L +A+T G+ +V +LL
Sbjct: 31 KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA-KERESALSLASTGGYTDIVGLLL 89
Query: 426 GQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTT 468
+ +IN D G + A HV + LL +G D+TT
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG--ADLTT 130
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+NK G+TPL+ A G +E V +L A + +E SAL LA+ GY + L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L IN G T L L A++G C + A + TP+ LA G
Sbjct: 89 LERDVDINIYDWNGGTPL-LYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY 147
Query: 134 LQVCKLL 140
+V +++
Sbjct: 148 RKVQQVI 154
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Query: 51 DQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDH 110
D+ G + L A+ G ++ LL A + ++ +AL LA+ GY D+ L+ +
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL-ER 91
Query: 111 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 170
I+I TPL A ++ + LL GA + D G P+ +A + +V
Sbjct: 92 DVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 171 QIF 173
Q+
Sbjct: 152 QVI 154
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
Query: 125 LHLAAEAGQLQVCKLLLDLGAS-IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLV 181
+H A G+L K L G + ++ D++G P+ A+ E + L A P ++
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
K+ + +A+ G ++ L++ D I N TPL A G H V
Sbjct: 66 A---KERESALSLASTGGYTDIVGLLLERDVDINIYDWNG---GTPLLYAVHGNHVKCVE 119
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQV 272
L+ GA T E +G+T + LA G+ +V
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKV 150
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 17/166 (10%)
Query: 193 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 252
H A QG + ++E ++ + V R TPL A+ G VR L++ GA
Sbjct: 7 HQLAAQGELDQLKEHLRKGDNLVNKPDER--GFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 253 ENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLS 311
K +A+ LA+ G+ ++ + +N+Y G T L A + V LL+
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN-GGTPLLYAVHGNHVKCVEALLA 123
Query: 312 HVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 357
GA E ++SG TP+ LA G V +++ N
Sbjct: 124 R-----------GADLTTE--ADSGYTPMDLAVALGYRKVQQVIEN 156
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 104/265 (39%), Gaps = 42/265 (15%)
Query: 185 TKDGNTCAHIAAMQGSVGVIEELMKFDRS-GVISARNRVTEATPLQLAAEGGHANVVRVL 243
T+DG+T H+A + ++ L+ F + +N + + T L LAA G A+ V L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAAILGEASTVEKL 64
Query: 244 VKAGASCTDENKTGFTAVHLAAQ-NGHNQ--VLEEMRSSKALNVYSKKLGVTALHVAAYF 300
AGA + G TA+HLA + H VL + R S + Y
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD-----------TYL 113
Query: 301 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 360
Q+ SH P V S P EN
Sbjct: 114 TQSQDCTPDTSHAPAAVDSQP-------------------------NPENEEEPRDEDWR 148
Query: 361 VQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQM 420
+Q++A+ +G+ PLH+A +V LL ADL + G+T LH+A +
Sbjct: 149 LQLEAENY-DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 421 VEVLLGQGAEINATDKGGARSIHTA 445
+E+LL GA+ A GG + +A
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSA 232
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 107/292 (36%), Gaps = 74/292 (25%)
Query: 369 ENGYNPLHLACFGGHVTVVGLLLSRAA--DLLQSADKNGKTCLHIAATHGHLQMVEVLLG 426
E+G LHLA H + LL +A + L + G+T LH+AA G VE L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 427 QGAEINATDKGGARSIHTAARYGHVGIINTLLQ--KGEKVDVT----TNNLACGHVTVVG 480
GA + ++GG ++H A R LLQ D + T + C T
Sbjct: 67 AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126
Query: 481 LLL------------SRAAD---LLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINA 525
R D L++ + +G T LH+A H +MV +L GA++N
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186
Query: 526 TDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPL 585
+ C GRT PL
Sbjct: 187 PEPTC----------------GRT----------------------------------PL 196
Query: 586 HLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 637
HLA EA V +LLL GA A G+ P+ A P +A++ LRAH
Sbjct: 197 HLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL-LRAH 247
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 99/248 (39%), Gaps = 28/248 (11%)
Query: 18 TSIGWTPLLIACNRGHMELVNTMLN---NHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
T G T L +A H ++ +L H +D+ + G++ALHLAA G + L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
A + R G TALHLA CR H A V +L R P +
Sbjct: 66 AAGAGVLVAERGGHTALHLA--------CRVRAHTCACV--LLQPRPSHPRDASDTY--- 112
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL-VTATTKDGNTCAH 193
L S D T D P V +Q N PE + L + A DG+T H
Sbjct: 113 --------LTQSQDCTPDTSHAPAAVDSQPN-PENEEEPRDEDWRLQLEAENYDGHTPLH 163
Query: 194 IAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDE 253
+A + ++ L D ++ TPL LA E A+V+ +L+KAGA T
Sbjct: 164 VAVIHKDAEMVRLLR--DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 254 NKTGFTAV 261
G T +
Sbjct: 222 MYGGRTPL 229
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 139
+ +++ G T LH+A ++ A++ R L A + +TPLHLA EA V +L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 140 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 177
LL GA A G+ P+ A P +A++ LRAH
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARL-LRAH 247
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 547 GRTALHLAAMNGYADLCRFLVHDHAA--VIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 604
G TALHLA ++ + FL+ A +D+ QT LHLAA G+ + L G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 605 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 639
A + + G +H+A + A + L+ PS
Sbjct: 69 AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPS 103
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQE-GRSALHLAAEHGYLKVCDA 72
L + G TPL +A E+V + + A ++ + GR+ LHLA E V +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 73 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
LL A ++ GRT L A + L R L
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 104/265 (39%), Gaps = 42/265 (15%)
Query: 185 TKDGNTCAHIAAMQGSVGVIEELMKFDRS-GVISARNRVTEATPLQLAAEGGHANVVRVL 243
T+DG+T H+A + ++ L+ F + +N + + T L LAA G A+ V L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAAILGEASTVEKL 64
Query: 244 VKAGASCTDENKTGFTAVHLAAQ-NGHNQ--VLEEMRSSKALNVYSKKLGVTALHVAAYF 300
AGA + G TA+HLA + H VL + R S + Y
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD-----------TYL 113
Query: 301 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 360
Q+ SH P V S P EN
Sbjct: 114 TQSQDCTPDTSHAPAAVDSQP-------------------------NPENEEEPRDEDWR 148
Query: 361 VQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQM 420
+Q++A+ +G+ PLH+A +V LL ADL + G+T LH+A +
Sbjct: 149 LQLEAENY-DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 421 VEVLLGQGAEINATDKGGARSIHTA 445
+E+LL GA+ A GG + +A
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSA 232
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 107/292 (36%), Gaps = 74/292 (25%)
Query: 369 ENGYNPLHLACFGGHVTVVGLLLSRAA--DLLQSADKNGKTCLHIAATHGHLQMVEVLLG 426
E+G LHLA H + LL +A + L + G+T LH+AA G VE L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 427 QGAEINATDKGGARSIHTAARYGHVGIINTLLQ--KGEKVDVT----TNNLACGHVTVVG 480
GA + ++GG ++H A R LLQ D + T + C T
Sbjct: 67 AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126
Query: 481 LLL------------SRAAD---LLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINA 525
R D L++ + +G T LH+A H +MV +L GA++N
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186
Query: 526 TDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPL 585
+ C GRT PL
Sbjct: 187 PEPTC----------------GRT----------------------------------PL 196
Query: 586 HLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 637
HLA EA V +LLL GA A G+ P+ A P +A++ LRAH
Sbjct: 197 HLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL-LRAH 247
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 99/248 (39%), Gaps = 28/248 (11%)
Query: 18 TSIGWTPLLIACNRGHMELVNTMLN---NHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
T G T L +A H ++ +L H +D+ + G++ALHLAA G + L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
A + R G TALHLA CR H A V +L R P +
Sbjct: 66 AAGAGVLVAERGGHTALHLA--------CRVRAHTCACV--LLQPRPSHPRDASDTY--- 112
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL-VTATTKDGNTCAH 193
L S D T D P V +Q N PE + L + A DG+T H
Sbjct: 113 --------LTQSQDCTPDTSHAPAAVDSQPN-PENEEEPRDEDWRLQLEAENYDGHTPLH 163
Query: 194 IAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDE 253
+A + ++ L D ++ TPL LA E A+V+ +L+KAGA T
Sbjct: 164 VAVIHKDAEMVRLLR--DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 254 NKTGFTAV 261
G T +
Sbjct: 222 MYGGRTPL 229
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 139
+ +++ G T LH+A ++ A++ R L A + +TPLHLA EA V +L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 140 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 177
LL GA A G+ P+ A P +A++ LRAH
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARL-LRAH 247
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 547 GRTALHLAAMNGYADLCRFLVHDHAA--VIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 604
G TALHLA ++ + FL+ A +D+ QT LHLAA G+ + L G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 605 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 639
A + + G +H+A + A + L+ PS
Sbjct: 69 AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPS 103
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQE-GRSALHLAAEHGYLKVCDA 72
L + G TPL +A E+V + + A ++ + GR+ LHLA E V +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 73 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
LL A ++ GRT L A + L R L
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
AA G+ VR LL+ V DA + G L + FG + LL A+ +Q D
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNR-FGKTALQVMMFGSPAVALELLKQGASPNVQ--D 71
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTL 457
+G + +H AA G L ++VL+ GA++NA D G+ IH A R GH +++ L
Sbjct: 72 ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 161 AAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA 218
AA+ + EV ++ R HP A + G T + M GS V EL+K G
Sbjct: 16 AARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVM-MFGSPAVALELLK---QGASPN 68
Query: 219 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 278
+ +P+ AA G + ++VLV+ GA + TG +HLA + GH+ V+ +
Sbjct: 69 VQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128
Query: 279 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 313
L+ + G+T L +A G + + L H+
Sbjct: 129 ESDLH-HRDASGLTPLELARQRGAQNLMDILQGHM 162
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 40 MLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGY 99
+L A +V D G S +H AA G+L L+ H A +N+ G +HLA G+
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 100 ADLCRFLV------HDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
+ + FL H A+ + TPL LA + G + +L
Sbjct: 120 SSVVSFLAPESDLHHRDASGL--------TPLELARQRGAQNLMDIL 158
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 74 LTHKAFINSKS--RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEA 131
L H+ ++ + R G+TAL + A L A ++ +P+H AA
Sbjct: 27 LLHRELVHPDALNRFGKTALQVMMFGSPAVALELL--KQGASPNVQDASGTSPVHDAART 84
Query: 132 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
G L K+L++ GA ++A D G PIH+A + V
Sbjct: 85 GFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 534 LTHKAFINSKS--RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEA 591
L H+ ++ + R G+TAL + A L A ++ +P+H AA
Sbjct: 27 LLHRELVHPDALNRFGKTALQVMMFGSPAVALELL--KQGASPNVQDASGTSPVHDAART 84
Query: 592 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
G L K+L++ GA ++A D G PIH+A + V
Sbjct: 85 GFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 31/113 (27%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
D +G + +H AA G L ++VL+ GA++NA D G +HL
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDS-----------------TGSLPIHL 113
Query: 554 AAMNGYADLCRFLV------HDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 600
A G++ + FL H A+ + TPL LA + G + +L
Sbjct: 114 AIREGHSSVVSFLAPESDLHHRDASGL--------TPLELARQRGAQNLMDIL 158
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
AA G+ VR LL+ V DA + G L + FG + LL A+ +Q D
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNR-FGKTALQVMMFGSPAVALELLKQGASPNVQ--D 73
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTL 457
+G + +H AA G L ++VL+ GA++NA D G+ IH A R GH +++ L
Sbjct: 74 ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 161 AAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA 218
AA+ + EV ++ R HP A + G T + M GS V EL+K G
Sbjct: 18 AARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVM-MFGSPAVALELLK---QGASPN 70
Query: 219 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 278
+ +P+ AA G + ++VLV+ GA + TG +HLA + GH+ V+ +
Sbjct: 71 VQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130
Query: 279 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 313
L+ + G+T L +A G + + L H+
Sbjct: 131 ESDLH-HRDASGLTPLELARQRGAQNLMDILQGHM 164
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 40 MLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGY 99
+L A +V D G S +H AA G+L L+ H A +N+ G +HLA G+
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 100 ADLCRFLV------HDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
+ + FL H A+ + TPL LA + G + +L
Sbjct: 122 SSVVSFLAPESDLHHRDASGL--------TPLELARQRGAQNLMDIL 160
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 74 LTHKAFINSKS--RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEA 131
L H+ ++ + R G+TAL + A L A ++ +P+H AA
Sbjct: 29 LLHRELVHPDALNRFGKTALQVMMFGSPAVALELL--KQGASPNVQDASGTSPVHDAART 86
Query: 132 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
G L K+L++ GA ++A D G PIH+A + V
Sbjct: 87 GFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 534 LTHKAFINSKS--RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEA 591
L H+ ++ + R G+TAL + A L A ++ +P+H AA
Sbjct: 29 LLHRELVHPDALNRFGKTALQVMMFGSPAVALELL--KQGASPNVQDASGTSPVHDAART 86
Query: 592 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
G L K+L++ GA ++A D G PIH+A + V
Sbjct: 87 GFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 31/113 (27%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
D +G + +H AA G L ++VL+ GA++NA D G +HL
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDS-----------------TGSLPIHL 115
Query: 554 AAMNGYADLCRFLV------HDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 600
A G++ + FL H A+ + TPL LA + G + +L
Sbjct: 116 AIREGHSSVVSFLAPESDLHHRDASGL--------TPLELARQRGAQNLMDIL 160
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 21/161 (13%)
Query: 340 LHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQ 399
L+LA ENV+ T E G+ PL A G + VV LL AD Q
Sbjct: 33 LYLATRIEQENVIN------------HTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQ 79
Query: 400 SADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQ 459
K ++ L +A + G+ +V++LL G ++N D G + A HV + LL+
Sbjct: 80 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 139
Query: 460 KGEKVDVTTNN--------LACGHVTVVGLLLSRAADLLQS 492
G + T++ +A G+ +V ++ S LLQ+
Sbjct: 140 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 180
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Query: 31 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTA 90
+G M + T + ++ D+EG + L AA HG + V + LL + A + +A
Sbjct: 29 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA 88
Query: 91 LHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 150
L LA GY D+ + L+ D ++ TPL A ++ K+LL+ GA
Sbjct: 89 LSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 147
Query: 151 DDQGQKPIHVAAQNNFPEVAQIF 173
D G + +A + V Q+
Sbjct: 148 TDSGYNSMDLAVALGYRSVQQVI 170
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLL-NSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLS 392
E G TPL AA G VV LL N A Q+ + +E+ L LAC G+ +V +LL
Sbjct: 50 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA---LSLACSKGYTDIVKMLLD 106
Query: 393 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
D + D NG T L A H++ V++LL GA+ G S+ A G+
Sbjct: 107 CGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 163
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 20/147 (13%)
Query: 488 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVG 547
+++ D+ G T L AA HG + +VE LL GA+ K G
Sbjct: 43 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK------------------G 84
Query: 548 R-TALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
R +AL LA GY D+ + L+ D ++ TPL A ++ K+LL+ GA
Sbjct: 85 RESALSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Query: 607 IDATDDQGQKPIHVAAQNNFPEVAQIF 633
D G + +A + V Q+
Sbjct: 144 PTIETDSGYNSMDLAVALGYRSVQQVI 170
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 125 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVT 182
+H A G++ ++ I+ TD++G P+ AA + V + L+ A P L+
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 183 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 242
K + +A +G +++ L+ GV TPL A G H V++
Sbjct: 83 ---KGRESALSLACSKGYTDIVKMLLD---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 136
Query: 243 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 278
L+++GA T E +G+ ++ LA G+ V + + S
Sbjct: 137 LLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 172
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 396 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIIN 455
+++ D+ G T L AA HG + +VE LL GA+ KG ++ A G+ I+
Sbjct: 43 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK 102
Query: 456 TLLQKGEKVDVTTNNLACG----------HVTVVGLLLSRAADLLQSADKNGKTCLHIAA 505
LL G VDV + G HV V +LL AD D +G + +A
Sbjct: 103 MLLDCG--VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 159
Query: 506 THGHLQMVEVL 516
G+ + +V+
Sbjct: 160 ALGYRSVQQVI 170
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Query: 45 ARVDVFDQEGRS-ALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLC 103
+R +++ Q S ++H A G + + + IN G T L AA +G +
Sbjct: 9 SRENLYFQGANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVV 68
Query: 104 RFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQ 163
FL+ + A +L +++ L LA G + K+LLD G ++ D G P+ A
Sbjct: 69 EFLLQN-GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH 127
Query: 164 NNFPEVAQIFLR--AHPSLVTAT 184
N + ++ L A P++ T +
Sbjct: 128 GNHVKCVKMLLESGADPTIETDS 150
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 409 LHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGE------ 462
+H A G + + + Q IN TD+ G + AA +G + ++ LLQ G
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 463 KVDVTTNNLAC--GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 520
K + +LAC G+ +V +LL D + D NG T L A H++ V++LL G
Sbjct: 83 KGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 141
Query: 521 AE 522
A+
Sbjct: 142 AD 143
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 534 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 593
+ + IN G T L AA +G + FL+ + A +L +++ L LA G
Sbjct: 39 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKGY 97
Query: 594 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTAT 644
+ K+LLD G ++ D G P+ A N + ++ L A P++ T +
Sbjct: 98 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS 150
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%)
Query: 1 MLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHL 60
ML + E +N G+TPL+ A G + +V +L N A + + SAL L
Sbjct: 32 MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL 91
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHA 111
A GY + LL +N G T L A + + L+ A
Sbjct: 92 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 21/161 (13%)
Query: 340 LHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQ 399
L+LA ENV+ T E G+ PL A G + VV LL AD Q
Sbjct: 15 LYLATRIEQENVIN------------HTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQ 61
Query: 400 SADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQ 459
K ++ L +A + G+ +V++LL G ++N D G + A HV + LL+
Sbjct: 62 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 121
Query: 460 KGEKVDVTTNN--------LACGHVTVVGLLLSRAADLLQS 492
G + T++ +A G+ +V ++ S LLQ+
Sbjct: 122 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 162
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Query: 31 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTA 90
+G M + T + ++ D+EG + L AA HG + V + LL + A + +A
Sbjct: 11 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA 70
Query: 91 LHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 150
L LA GY D+ + L+ D ++ TPL A ++ K+LL+ GA
Sbjct: 71 LSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 129
Query: 151 DDQGQKPIHVAAQNNFPEVAQIF 173
D G + +A + V Q+
Sbjct: 130 TDSGYNSMDLAVALGYRSVQQVI 152
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 333 SESGMTPLHLAAYSGNENVVRLLL-NSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
E G TPL AA G VV LL N A Q+ + +E+ L LAC G+ +V +LL
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA---LSLACSKGYTDIVKMLL 87
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
D + D NG T L A H++ V++LL GA+ G S+ A G+
Sbjct: 88 DCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 145
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 20/147 (13%)
Query: 488 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVG 547
+++ D+ G T L AA HG + +VE LL GA+ K G
Sbjct: 25 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK------------------G 66
Query: 548 R-TALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
R +AL LA GY D+ + L+ D ++ TPL A ++ K+LL+ GA
Sbjct: 67 RESALSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
Query: 607 IDATDDQGQKPIHVAAQNNFPEVAQIF 633
D G + +A + V Q+
Sbjct: 126 PTIETDSGYNSMDLAVALGYRSVQQVI 152
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 147 IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVI 204
I+ TD++G P+ AA + V + L+ A P L+ K + +A +G ++
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG---KGRESALSLACSKGYTDIV 83
Query: 205 EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 264
+ L+ GV TPL A G H V++L+++GA T E +G+ ++ LA
Sbjct: 84 KMLLD---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
Query: 265 AQNGHNQVLEEMRS 278
G+ V + + S
Sbjct: 141 VALGYRSVQQVIES 154
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 396 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIIN 455
+++ D+ G T L AA HG + +VE LL GA+ KG ++ A G+ I+
Sbjct: 25 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK 84
Query: 456 TLLQKGEKVDVTTNNLACG----------HVTVVGLLLSRAADLLQSADKNGKTCLHIAA 505
LL G VDV + G HV V +LL AD D +G + +A
Sbjct: 85 MLLDCG--VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 141
Query: 506 THGHLQMVEVL 516
G+ + +V+
Sbjct: 142 ALGYRSVQQVI 152
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 409 LHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGE------ 462
+H A G + + + Q IN TD+ G + AA +G + ++ LLQ G
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 463 KVDVTTNNLAC--GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 520
K + +LAC G+ +V +LL D + D NG T L A H++ V++LL G
Sbjct: 65 KGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 123
Query: 521 AE 522
A+
Sbjct: 124 AD 125
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Query: 57 ALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDI 116
++H A G + + + IN G T L AA +G + FL+ + A +
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQL 62
Query: 117 LTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR- 175
L +++ L LA G + K+LLD G ++ D G P+ A N + ++ L
Sbjct: 63 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 122
Query: 176 -AHPSLVTAT 184
A P++ T +
Sbjct: 123 GADPTIETDS 132
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 534 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 593
+ + IN G T L AA +G + FL+ + A +L +++ L LA G
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKGY 79
Query: 594 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTAT 644
+ K+LLD G ++ D G P+ A N + ++ L A P++ T +
Sbjct: 80 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS 132
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%)
Query: 1 MLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHL 60
ML + E +N G+TPL+ A G + +V +L N A + + SAL L
Sbjct: 14 MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL 73
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHA 111
A GY + LL +N G T L A + + L+ A
Sbjct: 74 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 21/161 (13%)
Query: 340 LHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQ 399
L+LA ENV+ T E G+ PL A G + VV LL AD Q
Sbjct: 17 LYLATRIEQENVIN------------HTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQ 63
Query: 400 SADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQ 459
K ++ L +A + G+ +V++LL G ++N D G + A HV + LL+
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 460 KGEKVDVTTNN--------LACGHVTVVGLLLSRAADLLQS 492
G + T++ +A G+ +V ++ S LLQ+
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 164
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Query: 31 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTA 90
+G M + T + ++ D+EG + L AA HG + V + LL + A + +A
Sbjct: 13 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA 72
Query: 91 LHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 150
L LA GY D+ + L+ D ++ TPL A ++ K+LL+ GA
Sbjct: 73 LSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131
Query: 151 DDQGQKPIHVAAQNNFPEVAQIF 173
D G + +A + V Q+
Sbjct: 132 TDSGYNSMDLAVALGYRSVQQVI 154
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 333 SESGMTPLHLAAYSGNENVVRLLL-NSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
E G TPL AA G VV LL N A Q+ + +E+ L LAC G+ +V +LL
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA---LSLACSKGYTDIVKMLL 89
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
D + D NG T L A H++ V++LL GA+ G S+ A G+
Sbjct: 90 DCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 147
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 20/147 (13%)
Query: 488 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVG 547
+++ D+ G T L AA HG + +VE LL GA+ K G
Sbjct: 27 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK------------------G 68
Query: 548 R-TALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
R +AL LA GY D+ + L+ D ++ TPL A ++ K+LL+ GA
Sbjct: 69 RESALSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Query: 607 IDATDDQGQKPIHVAAQNNFPEVAQIF 633
D G + +A + V Q+
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVI 154
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 147 IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVI 204
I+ TD++G P+ AA + V + L+ A P L+ K + +A +G ++
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG---KGRESALSLACSKGYTDIV 85
Query: 205 EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 264
+ L+ GV TPL A G H V++L+++GA T E +G+ ++ LA
Sbjct: 86 KMLLD---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Query: 265 AQNGHNQVLEEMRS 278
G+ V + + S
Sbjct: 143 VALGYRSVQQVIES 156
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 396 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIIN 455
+++ D+ G T L AA HG + +VE LL GA+ KG ++ A G+ I+
Sbjct: 27 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK 86
Query: 456 TLLQKGEKVDVTTNNLACG----------HVTVVGLLLSRAADLLQSADKNGKTCLHIAA 505
LL G VDV + G HV V +LL AD D +G + +A
Sbjct: 87 MLLDCG--VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 143
Query: 506 THGHLQMVEVL 516
G+ + +V+
Sbjct: 144 ALGYRSVQQVI 154
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 409 LHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGE------ 462
+H A G + + + Q IN TD+ G + AA +G + ++ LLQ G
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 463 KVDVTTNNLAC--GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 520
K + +LAC G+ +V +LL D + D NG T L A H++ V++LL G
Sbjct: 67 KGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125
Query: 521 AE 522
A+
Sbjct: 126 AD 127
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Query: 57 ALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDI 116
++H A G + + + IN G T L AA +G + FL+ + A +
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQL 64
Query: 117 LTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR- 175
L +++ L LA G + K+LLD G ++ D G P+ A N + ++ L
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
Query: 176 -AHPSLVTAT 184
A P++ T +
Sbjct: 125 GADPTIETDS 134
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 534 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 593
+ + IN G T L AA +G + FL+ + A +L +++ L LA G
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKGY 81
Query: 594 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTAT 644
+ K+LLD G ++ D G P+ A N + ++ L A P++ T +
Sbjct: 82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS 134
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%)
Query: 1 MLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHL 60
ML + E +N G+TPL+ A G + +V +L N A + + SAL L
Sbjct: 16 MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL 75
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHA 111
A GY + LL +N G T L A + + L+ A
Sbjct: 76 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
AA G+ VR LL+ V DA + G L + FG + LL A+ +Q D
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNR-FGKTALQVMMFGSTAIALELLKQGASPNVQ--D 71
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTL 457
+G + +H AA G L ++VL+ GA++N D GA IH A + GH +++ L
Sbjct: 72 TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 126
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 161 AAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA 218
AA+ + EV ++ R HP A + G T + M GS + EL+K G
Sbjct: 16 AARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVM-MFGSTAIALELLK---QGASPN 68
Query: 219 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 278
+ +P+ AA G + ++VLV+ GA + TG +HLA Q GH V+ + +
Sbjct: 69 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 128
Query: 279 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 313
L+ + G+T L +A G D V L H+
Sbjct: 129 ESDLHRRDAR-GLTPLELALQRGAQDLVDILQGHM 162
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 40 MLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGY 99
+L A +V D G S +H AA G+L L+ H A +N G +HLA G+
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 100 ADLCRFLVHDHAAVIDI--LTLRKQTPLHLAAEAGQLQVCKLL 140
+ FL AA D+ R TPL LA + G + +L
Sbjct: 120 TAVVSFL----AAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 15/131 (11%)
Query: 522 EINATDKVCDAL----------LTHKAFI--NSKSRVGRTALHLAAMNGYADLCRFLVHD 569
E+ A D++ A L H+ + ++ +R G+TAL + A L
Sbjct: 5 EVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELL--K 62
Query: 570 HAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEV 629
A ++ +P+H AA G L K+L++ GA ++ D G PIH+A Q V
Sbjct: 63 QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 122
Query: 630 AQIFLRAHPSL 640
FL A L
Sbjct: 123 VS-FLAAESDL 132
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 61 AAEHGYLKVCDALLTHKAFI--NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILT 118
AA G ++ LL H+ + ++ +R G+TAL + A L A ++
Sbjct: 15 AAARGDVQEVRRLL-HRELVHPDALNRFGKTALQVMMFGSTAIALELL--KQGASPNVQD 71
Query: 119 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 178
+P+H AA G L K+L++ GA ++ D G PIH+A Q V FL A
Sbjct: 72 TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAES 130
Query: 179 SL 180
L
Sbjct: 131 DL 132
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 66/189 (34%), Gaps = 45/189 (23%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V V LL R + ++ GKT L + G + LL QGA N D
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTS 73
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AAR G + + L++ G V+V D G
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVP--------------------------DGTG 107
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
+H+A GH +V + L ++ ++ + G T L LA
Sbjct: 108 ALPIHLAVQEGHTAVV------------------SFLAAESDLHRRDARGLTPLELALQR 149
Query: 558 GYADLCRFL 566
G DL L
Sbjct: 150 GAQDLVDIL 158
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 22/166 (13%)
Query: 490 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA----------------L 533
+ D G T L+IA + +++ + L+ +GA+IN + + D+ +
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 534 LTHKA-FINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAA--- 589
L H +N +R G AL AA G+ D + L+ D ID T L A
Sbjct: 92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151
Query: 590 EAGQL--QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
E QL + KLL++ GA D+ G+ + A Q + E+++I
Sbjct: 152 EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 82/174 (47%), Gaps = 11/174 (6%)
Query: 106 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP-IHVAAQN 164
++ D +D + TPL++A +++ K L+D GA I+ + P ++ AQ
Sbjct: 24 ILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83
Query: 165 NFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARN---- 220
+A + A P L GN AA +G + ++ L++ R + +
Sbjct: 84 RTEILAYMLKHATPDLNKHNRYGGNALIP-AAEKGHIDNVKLLLEDGREDIDFQNDFGYT 142
Query: 221 RVTEATPLQLAAEGG--HANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV 272
+ EA L+ EG + ++V++L++ GA + ++ +G TA+ A Q G+ ++
Sbjct: 143 ALIEAVGLR---EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI 193
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 22/191 (11%)
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADL-LQSA 401
AA + V+ +L QVD + G PL++A + + L+ R AD+ LQ++
Sbjct: 12 AANQRDTKKVKEILQDTTYQVD-EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS 70
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGA-EINATDKGGARSIHTAARYGHVGIINTLLQK 460
+ A G +++ +L ++N ++ G ++ AA GH+ + LL+
Sbjct: 71 ISDSPYLY--AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128
Query: 461 G-EKVDVTTNNLACGHVTVVG-------------LLLSRAADLLQS-ADKNGKTCLHIAA 505
G E +D + + VG LL+ AD QS D +G+T + A
Sbjct: 129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD--QSIKDNSGRTAMDYAN 186
Query: 506 THGHLQMVEVL 516
G+ ++ ++L
Sbjct: 187 QKGYTEISKIL 197
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 22/188 (11%)
Query: 125 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 184
L A + +V ++L D +D D +G P+++A NN E+A+ + +
Sbjct: 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN 69
Query: 185 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLV 244
+ + + A QG ++ ++K ++ NR L AAE GH + V++L+
Sbjct: 70 SISDSPYLY-AGAQGRTEILAYMLKHATPD-LNKHNRYG-GNALIPAAEKGHIDNVKLLL 126
Query: 245 KAGASCTD-ENKTGFTA-----------------VHLAAQNGHNQVLEEMRSSKALNVYS 286
+ G D +N G+TA V L +NG +Q +++ A++ Y+
Sbjct: 127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD-YA 185
Query: 287 KKLGVTAL 294
+ G T +
Sbjct: 186 NQKGYTEI 193
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 74/189 (39%), Gaps = 40/189 (21%)
Query: 25 LLIACNRGHMELVNTMLNNHA-RVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI--- 80
LL A N+ + V +L + +VD D EG + L++A + +++ AL+ A I
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 81 -------------------------------NSKSRVGRTALHLAAMNGYADLCRFLVHD 109
N +R G AL AA G+ D + L+ D
Sbjct: 69 NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128
Query: 110 HAAVIDILTLRKQTPLHLAA---EAGQL--QVCKLLLDLGASIDATDDQGQKPIHVAAQN 164
ID T L A E QL + KLL++ GA D+ G+ + A Q
Sbjct: 129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK 188
Query: 165 NFPEVAQIF 173
+ E+++I
Sbjct: 189 GYTEISKIL 197
Score = 36.6 bits (83), Expect = 0.071, Method: Composition-based stats.
Identities = 44/193 (22%), Positives = 74/193 (38%), Gaps = 47/193 (24%)
Query: 398 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTL 457
+ D G T L+IA + +++ + L+ +GA+IN + SI + + Y + G
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN-----SI-SDSPYLYAG----- 80
Query: 458 LQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 517
A G ++ +L A L ++ G L AA GH+ V++LL
Sbjct: 81 --------------AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 518 GQGAE-------------INAT---------DKVCDALLTHKAFINSKSRVGRTALHLAA 555
G E I A + L+ + A + K GRTA+ A
Sbjct: 127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN 186
Query: 556 MNGYADLCRFLVH 568
GY ++ + L
Sbjct: 187 QKGYTEISKILAQ 199
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNN-HARVDVFDQEGRSALHLA-----AEHGYL 67
LNK G L+ A +GH++ V +L + +D + G +AL A Y
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 68 KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVH 108
+ L+ + A + K GRTA+ A GY ++ + L
Sbjct: 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 566 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP-IHVAAQN 624
++ D +D + TPL++A +++ K L+D GA I+ + P ++ AQ
Sbjct: 24 ILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83
Query: 625 NFPEVAQIFLRAHPSL 640
+A + A P L
Sbjct: 84 RTEILAYMLKHATPDL 99
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 585 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
L A + +V ++L D +D D +G P+++A NN E+A+ +
Sbjct: 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
AA G+ VR LL+ V DA G L + FG + LL A+ +Q D
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDA-LNRFGKTALQVMMFGSTAIALELLKQGASPNVQ--D 65
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTL 457
+G + +H AA G L ++VL+ GA++N D GA IH A + GH +++ L
Sbjct: 66 TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 161 AAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA 218
AA+ + EV ++ R HP A + G T + M GS + EL+K G
Sbjct: 10 AARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVM-MFGSTAIALELLK---QGASPN 62
Query: 219 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 278
+ +P+ AA G + ++VLV+ GA + TG +HLA Q GH V+ + +
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 279 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 313
L+ + G+T L +A G D V L H+
Sbjct: 123 ESDLHRRDAR-GLTPLELALQRGAQDLVDILQGHM 156
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 40 MLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGY 99
+L A +V D G S +H AA G+L L+ H A +N G +HLA G+
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 100 ADLCRFLVHDHAAVIDI--LTLRKQTPLHLAAEAGQLQVCKLL 140
+ FL AA D+ R TPL LA + G + +L
Sbjct: 114 TAVVSFL----AAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 61 AAEHGYLKVCDALLTHKAFINSKS--RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILT 118
AA G ++ LL H+ ++ + R G+TAL + A L A ++
Sbjct: 9 AAARGDVQEVRRLL-HRELVHPDALNRFGKTALQVMMFGSTAIALELL--KQGASPNVQD 65
Query: 119 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 178
+P+H AA G L K+L++ GA ++ D G PIH+A Q V FL A
Sbjct: 66 TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAES 124
Query: 179 SL 180
L
Sbjct: 125 DL 126
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 534 LTHKAFINSKS--RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEA 591
L H+ ++ + R G+TAL + A L A ++ +P+H AA
Sbjct: 21 LLHRELVHPDALNRFGKTALQVMMFGSTAIALELL--KQGASPNVQDTSGTSPVHDAART 78
Query: 592 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 640
G L K+L++ GA ++ D G PIH+A Q V FL A L
Sbjct: 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDL 126
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 66/189 (34%), Gaps = 45/189 (23%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
A G V V LL R + ++ GKT L + G + LL QGA N D
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTS 67
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G +H AAR G + + L++ G V+V D G
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVP--------------------------DGTG 101
Query: 498 KTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMN 557
+H+A GH +V + L ++ ++ + G T L LA
Sbjct: 102 ALPIHLAVQEGHTAVV------------------SFLAAESDLHRRDARGLTPLELALQR 143
Query: 558 GYADLCRFL 566
G DL L
Sbjct: 144 GAQDLVDIL 152
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 120
AA G L+ +LL + +N+++ GRTAL + + G ++ R L+ A D+
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLKDRT 69
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
+H AA AGQL + LL+ A ++ D++G P+H+AA+ V + ++ S
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSG 214
V G+T +A + G V+ LM+ + +G
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVV-SLMQANGAG 162
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%)
Query: 32 GHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTAL 91
G+ E+ +L A D+ D+ G + +H AA G L LL +A +N + G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 92 HLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 146
HLAA G+ + FLV A+ + + T LA G+ +V L+ GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 547 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
GRTAL + + G ++ R L+ A D+ +H AA AGQL + LL+ A
Sbjct: 38 GRTALQVMKL-GNPEIARRLLL-RGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD 95
Query: 607 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
++ D++G P+H+AA+ V + ++ S V + + A DL
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQ 459
D+ G +H AA G L ++ LL A++N D G +H AA+ GH+ ++ L++
Sbjct: 67 DRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 132 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 191
G ++ + LL GA+ D D G IH AA+ + Q L V +GN
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEGNLP 106
Query: 192 AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGAS 249
H+AA +G + V+E L+K S V RN + T LA G VV ++ GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNV-GHRNHKGD-TACDLARLYGRNEVVSLMQANGAG 162
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 235 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTAL 294
G+ + R L+ GA+ +++TGF +H AA+ G L+ + +A G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 295 HVAAYFGQADTVRELLSHVPGTV 317
H+AA G V L+ H V
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNV 130
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
D+ G +H AA G L ++ LL A++N D G LHL
Sbjct: 67 DRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNE-----------------GNLPLHL 109
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
AA G+ + FLV A+ + + T LA G+ +V L+ GA
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%)
Query: 32 GHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTAL 91
G+ E+ +L A D+ D+ G + +H AA G+L LL +A +N + G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 92 HLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 146
HLAA G+ + FLV A+ + + T LA G+ +V L+ GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 120
AA G L+ +LL + +N+++ GRTAL + + G ++ R L+ A D+
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLKDRT 69
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
+H AA AG L + LL+ A ++ D++G P+H+AA+ V + ++ S
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSG 214
V G+T +A + G V+ LM+ + +G
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVV-SLMQANGAG 162
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 132 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 191
G ++ + LL GA+ D D G IH AA+ F + Q L V +GN
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLP 106
Query: 192 AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGAS 249
H+AA +G + V+E L+K S V RN + T LA G VV ++ GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNV-GHRNHKGD-TACDLARLYGRNEVVSLMQANGAG 162
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQ 459
D+ G +H AA G L ++ LL A++N D G +H AA+ GH+ ++ L++
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 528 KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHL 587
++ LL A + K R G +H AA G+ D + L+ + A ++I PLHL
Sbjct: 51 EIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHL 109
Query: 588 AAEAGQLQVCKLLLDLGAS 606
AA+ G L+V + L+ AS
Sbjct: 110 AAKEGHLRVVEFLVKHTAS 128
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
D+ G +H AA G L ++ LL A++N D G LHL
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-----------------GNLPLHL 109
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
AA G+ + FLV A+ + + T LA G+ +V L+ GA
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 235 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTAL 294
G+ + R L+ GA+ +++TG +H AA+ G L+ + +A G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 295 HVAAYFGQADTVRELLSHVPGTV 317
H+AA G V L+ H V
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%)
Query: 32 GHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTAL 91
G+ E+ +L A D+ D+ G + +H AA G+L LL ++A +N + G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 92 HLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 146
HLAA G+ + FLV A+ + + T LA G+ +V L+ GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 120
AA G L+ +LL + +N+++ GRTAL + + G ++ R L+ A D+
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLKDRT 69
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
+H AA AG L + LL+ A ++ D++G P+H+AA+ V + ++ S
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSG 214
V G+T +A + G V+ LM+ + +G
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVV-SLMQANGAG 162
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 132 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 191
G ++ + LL GA+ D D G IH AA+ F + Q L V +GN
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQAD-VNIEDNEGNLP 106
Query: 192 AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGAS 249
H+AA +G + V+E L+K S V RN + T LA G VV ++ GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNV-GHRNHKGD-TACDLARLYGRNEVVSLMQANGAG 162
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQ 459
D+ G +H AA G L ++ LL A++N D G +H AA+ GH+ ++ L++
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 528 KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHL 587
++ LL A + K R G +H AA G+ D + L+ + A V +I PLHL
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHL 109
Query: 588 AAEAGQLQVCKLLLDLGAS 606
AA+ G L+V + L+ AS
Sbjct: 110 AAKEGHLRVVEFLVKHTAS 128
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 235 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTAL 294
G+ + R L+ GA+ +++TGF +H AA+ G L+ + ++A G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 295 HVAAYFGQADTVRELLSHVPGTV 317
H+AA G V L+ H V
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNV 130
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
D+ G +H AA G L ++ LL A++N D G LHL
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNE-----------------GNLPLHL 109
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
AA G+ + FLV A+ + + T LA G+ +V L+ GA
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%)
Query: 32 GHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTAL 91
G+ E+ +L A D+ D+ G + +H AA G+L LL +A +N + G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 92 HLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 146
HLAA G+ + FLV A+ + + T LA G+ +V L+ GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 120
AA G L+ +LL + +N+++ GRTAL + + G ++ R L+ A D+
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLKDRT 69
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
+H AA AG L + LL+ A ++ D++G P+H+AA+ V + ++ S
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSG 214
V G+T +A + G V+ LM+ + +G
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVV-SLMQANGAG 162
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 132 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 191
G ++ + LL GA+ D D G IH AA+ F + Q L V +GN
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLP 106
Query: 192 AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGAS 249
H+AA +G + V+E L+K S V RN + T LA G VV ++ GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNV-GHRNHKGD-TACDLARLYGRNEVVSLMQANGAG 162
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQ 459
D+ G +H AA G L ++ LL A++N D G +H AA+ GH+ ++ L++
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 528 KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHL 587
++ LL A + K R G +H AA G+ D + L+ + A ++I PLHL
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHL 109
Query: 588 AAEAGQLQVCKLLLDLGAS 606
AA+ G L+V + L+ AS
Sbjct: 110 AAKEGHLRVVEFLVKHTAS 128
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 235 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTAL 294
G+ + R L+ GA+ +++TGF +H AA+ G L+ + +A G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 295 HVAAYFGQADTVRELLSHVPGTV 317
H+AA G V L+ H V
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNV 130
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
D+ G +H AA G L ++ LL A++N D G LHL
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-----------------GNLPLHL 109
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
AA G+ + FLV A+ + + T LA G+ +V L+ GA
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%)
Query: 32 GHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTAL 91
G+ E+ +L A D+ D+ G + +H AA G+L LL +A +N + G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 92 HLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 146
HLAA G+ + FLV A+ + + T LA G+ +V L+ GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 120
AA G L+ +LL + +N+++ GRTAL + + G ++ R L+ A D+
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLKDRT 69
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
+H AA AG L + LL+ A ++ D++G P+H+AA+ V + ++ S
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSG 214
V G+T +A + G V+ LM+ + +G
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVV-SLMQANGAG 162
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 132 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 191
G ++ + LL GA+ D D G IH AA+ F + Q L V +GN
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLP 106
Query: 192 AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGAS 249
H+AA +G + V+E L+K S V RN + T LA G VV ++ GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNV-GHRNHKGD-TACDLARLYGRNEVVSLMQANGAG 162
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQ 459
D+ G +H AA G L ++ LL A++N D G +H AA+ GH+ ++ L++
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 528 KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHL 587
++ LL A + K R G +H AA G+ D + L+ + A ++I PLHL
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHL 109
Query: 588 AAEAGQLQVCKLLLDLGAS 606
AA+ G L+V + L+ AS
Sbjct: 110 AAKEGHLRVVEFLVKHTAS 128
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 235 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTAL 294
G+ + R L+ GA+ +++TGF +H AA+ G L+ + +A G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 295 HVAAYFGQADTVRELLSHVPGTV 317
H+AA G V L+ H V
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNV 130
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
D+ G +H AA G L ++ LL A++N D G LHL
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-----------------GNLPLHL 109
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
AA G+ + FLV A+ + + T LA G+ +V L+ GA
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 105/281 (37%), Gaps = 62/281 (22%)
Query: 252 DENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLS 311
DEN +H+AA+ G + + + + G TALH+A FG DT + L S
Sbjct: 18 DEN---XEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74
Query: 312 HVPGTVKSDPPTGASFLGELGS-ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 370
+GE+ S G P+HLA + ++V L+ A +E
Sbjct: 75 ----------------VGEVHSLWHGQKPIHLAVXANKTDLVVALVEGA--------KER 110
Query: 371 GYNPLHL--ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHG--HLQMVEVLLG 426
G P L C V +G + G+T LH G +L+ +++L+
Sbjct: 111 GQXPESLLNECDEREVNEIGSHVKHC---------KGQTALHWCVGLGPEYLEXIKILVQ 161
Query: 427 QGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRA 486
GA A DK + A + + E +D+ + + S++
Sbjct: 162 LGASPTAKDKADETPLXRAXEF----------RNREALDLXXDTVP-----------SKS 200
Query: 487 ADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATD 527
+ L A+K G + LH A + + G ++N D
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXED 241
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 51 DQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDH 110
D E +H+AA G L+ ++R G TALHLA G D ++L
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL---- 72
Query: 111 AAVIDILTL-RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEV 169
A+V ++ +L Q P+HLA A + + L ++ ++GQ P + + + EV
Sbjct: 73 ASVGEVHSLWHGQKPIHLAVXANKTDLVVAL------VEGAKERGQXPESLLNECDEREV 126
Query: 170 AQI 172
+I
Sbjct: 127 NEI 129
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 20/248 (8%)
Query: 228 LQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK 287
+ +AA G + VR L++ G S T +N+ G TA+HLA + G + + S V+S
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS--VGEVHSL 81
Query: 288 KLGVTALHVAAYFGQADTVRELLS------HVPGTVKSDPPTGASFLGELGSE----SGM 337
G +H+A + D V L+ P ++ ++ + E+GS G
Sbjct: 82 WHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNE--CDEREVNEIGSHVKHCKGQ 139
Query: 338 TPLHLAAYSGNENVVRL-LLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGL----LLS 392
T LH G E + + +L G A+ + + PL A + + L + S
Sbjct: 140 TALHWCVGLGPEYLEXIKILVQLGASPTAKDKAD-ETPLXRAXEFRNREALDLXXDTVPS 198
Query: 393 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVG 452
+++ L A+K G + LH A + + G ++N D ++ + R V
Sbjct: 199 KSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVL 258
Query: 453 IINTLLQK 460
+ LLQK
Sbjct: 259 LTKELLQK 266
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 92/244 (37%), Gaps = 33/244 (13%)
Query: 398 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTL 457
++S D+N + +H+AA G V L+ G ++ G ++H A ++G V L
Sbjct: 14 IKSDDENXEK-IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72
Query: 458 LQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 517
GE V + H+ V L++ A + G Q E LL
Sbjct: 73 ASVGE-VHSLWHGQKPIHLAVXANKTDLVVALVEGAKERG-------------QXPESLL 118
Query: 518 GQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNG--YADLCRFLVHDHAAVID 575
+ CD ++ + K G+TALH G Y + + LV A+
Sbjct: 119 NE----------CDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPT- 167
Query: 576 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS-----IDATDDQGQKPIHVAAQNNFPEVA 630
+TPL A E + L D S +D + QG +H A N+ +VA
Sbjct: 168 AKDKADETPLXRAXEFRNREALDLXXDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227
Query: 631 QIFL 634
F+
Sbjct: 228 XRFV 231
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
+ G+ LH AA G L+++E LL +GA+INA DK + +A GHV + LL KG
Sbjct: 33 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 91
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 412 AATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNN- 470
A +G L V+ + +G ++N T +GG + +H AA G + I+ LL KG ++ +
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 471 -------LACGHVTVVGLLLSRAAD 488
+ GHV+ V LLLS+ AD
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
E G PLH AA G ++ LL G ++A + + PL A + GHV+ V LLLS+
Sbjct: 33 EGGRKPLHYAADCGQLEILEFLL-LKGADINAPDKHH-ITPLLSAVYEGHVSCVKLLLSK 90
Query: 394 AAD 396
AD
Sbjct: 91 GAD 93
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 366 QTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 425
+T E G PLH A G + ++ LL + AD + + DK+ T L A GH+ V++LL
Sbjct: 30 RTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLL 88
Query: 426 GQGAE 430
+GA+
Sbjct: 89 SKGAD 93
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 495 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDK 528
+ G+ LH AA G L+++E LL +GA+INA DK
Sbjct: 33 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDK 66
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 158
+ PLH AA+ GQL++ + LL GA I+A D P+
Sbjct: 36 RKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 582 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 618
+ PLH AA+ GQL++ + LL GA I+A D P+
Sbjct: 36 RKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 240
V T + G H AA G + ++E L+ + I+A ++ TPL A GH + V
Sbjct: 28 VNRTLEGGRKPLHYAADCGQLEILEFLLL--KGADINAPDK-HHITPLLSAVYEGHVSCV 84
Query: 241 RVLVKAGASCTDENKTGFTAVH 262
++L+ GA T + G TA+
Sbjct: 85 KLLLSKGADKTVKGPDGLTALE 106
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 28 ACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVG 87
A G ++ V + V+ + GR LH AA+ G L++ + LL A IN+ +
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 88 RTALHLAAMNGYADLCRFLV 107
T L A G+ + L+
Sbjct: 69 ITPLLSAVYEGHVSCVKLLL 88
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
+ G+ LH AA G L+++E LL +GA+INA DK + +A GHV + LL KG
Sbjct: 38 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 412 AATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNN- 470
A +G L V+ + +G ++N T +GG + +H AA G + I+ LL KG ++ +
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 471 -------LACGHVTVVGLLLSRAAD 488
+ GHV+ V LLLS+ AD
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
E G PLH AA G ++ LL G ++A + + PL A + GHV+ V LLLS+
Sbjct: 38 EGGRKPLHYAADCGQLEILEFLL-LKGADINAPDKHH-ITPLLSAVYEGHVSCVKLLLSK 95
Query: 394 AAD 396
AD
Sbjct: 96 GAD 98
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 366 QTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 425
+T E G PLH A G + ++ LL + AD + + DK+ T L A GH+ V++LL
Sbjct: 35 RTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLL 93
Query: 426 GQGAE 430
+GA+
Sbjct: 94 SKGAD 98
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 495 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDK 528
+ G+ LH AA G L+++E LL +GA+INA DK
Sbjct: 38 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDK 71
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 158
+ PLH AA+ GQL++ + LL GA I+A D P+
Sbjct: 41 RKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 582 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 618
+ PLH AA+ GQL++ + LL GA I+A D P+
Sbjct: 41 RKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
+ A G ++ V + V+ + GR LH AA+ G L++ + LL A IN+
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 85 RVGRTALHLAAMNGYADLCRFLV 107
+ T L A G+ + L+
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLL 93
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 240
V T + G H AA G + ++E L+ + I+A ++ TPL A GH + V
Sbjct: 33 VNRTLEGGRKPLHYAADCGQLEILEFLLL--KGADINAPDK-HHITPLLSAVYEGHVSCV 89
Query: 241 RVLVKAGASCTDENKTGFTA 260
++L+ GA T + G TA
Sbjct: 90 KLLLSKGADKTVKGPDGLTA 109
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
L+ + G TPL++A ++ ++N+HA V+ D G+SALH AA + L
Sbjct: 8 LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 67
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L + A + ++ T L LAA G + + L+ DH A DI + P +A E
Sbjct: 68 LKNGANKDMQNNKEETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIAQERMH 126
Query: 134 LQVCKLL 140
+ +LL
Sbjct: 127 HDIVRLL 133
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 19/152 (12%)
Query: 482 LLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFIN 541
L +RA DL + +G T L +AA M+E L+ A++NA D
Sbjct: 1 LRNRATDL-DARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDD------------- 46
Query: 542 SKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 601
+G++ALH AA D L+ + A D+ +++TPL LAA G + K+LL
Sbjct: 47 ----LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNKEETPLFLAAREGSYETAKVLL 101
Query: 602 DLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
D A+ D TD + P +A + ++ ++
Sbjct: 102 DHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 353 RLLLNSAGVQVDAQTQENGYNPLHLA-----CFGGHVTVVGLLLSRAADLLQSADKNGKT 407
R L G + A +NPL LA G +V ++ D D+ G T
Sbjct: 14 RTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE-GIT 72
Query: 408 CLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
LH A GH ++V+ L+ G +NA D G +H AA +V + L++ G V
Sbjct: 73 ALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 94 AAMNGYADLCRFLVHDHAAVIDILTLRKQ---TPLHLAAEAGQLQVCKLLLDLGASIDAT 150
+++ G DL + ++++ +D +L T LH A AG ++ K L+ G +++A
Sbjct: 44 SSLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 151 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 192
D G P+H AA N +V + + + ++ T D T A
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA 141
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQ---TPLHLAAEAGQLQVCKLLLDLGASIDAT 610
+++ G DL + ++++ +D +L T LH A AG ++ K L+ G +++A
Sbjct: 44 SSLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 611 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIAAGKHCEGM 664
D G P+H AA N +V + + + ++ T D+ A CE M
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY------SDMQTAADKCEEM 147
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL + G +LV ++ + + EG +ALH A G+ ++ L+ +N+
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQT 123
G T LH AA +C+FLV AAV + QT
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 29/169 (17%)
Query: 277 RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESG 336
R + + V L + L ++ G+ D V+ ++ V D P+ L ++ G
Sbjct: 24 RIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEV------DDPS-------LPNDEG 70
Query: 337 MTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA- 395
+T LH A +G+ +V+ L+ GV V+A +G+ PLH A +V V L+ A
Sbjct: 71 ITALHNAVCAGHTEIVKFLV-QFGVNVNA-ADSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 396 -------DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
D+ +ADK C + G+ Q + L G ++ +KG
Sbjct: 129 VFAMTYSDMQTAADK----CEEM--EEGYTQCSQFLYGVQEKMGIMNKG 171
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
+ G T LH A GH ++V+ L+ G +NA D G T LH
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-----------------DGWTPLHC 109
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQT 583
AA +C+FLV AAV + QT
Sbjct: 110 AASCNNVQVCKFLVESGAAVFAMTYSDMQT 139
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 458 LQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 517
L E + N + GH +V L+ ++ +AD +G T LH AA+ ++Q+ + L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 518 GQGAEINA 525
GA + A
Sbjct: 124 ESGAAVFA 131
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKA-- 78
G T L A GH E+V ++ V+ D +G + LH AA ++VC L+ A
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 79 FINSKSRVGRTALHLAAM-NGYADLCRFL 106
F + S + A M GY +FL
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 281
T L A GH +V+ LV+ G + + G+T +H AA + QV + + S A
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 395 ADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAA 446
A++L + D NG TCL+IAA G++ +V+ LL GA+ +K G R + A
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 487 ADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAE 522
A++L + D NG TCL+IAA G++ +V+ LL GA+
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 353 RLLLNSAGVQVDAQTQENGYNPLHL---ACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
R L G + A +NPL L + G +V ++ D D+ G T L
Sbjct: 16 RTNLRKTGSERIAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE-GITAL 74
Query: 410 HIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
H A GH ++V+ L+ G +NA D G +H AA +V + L++ G V
Sbjct: 75 HNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 94 AAMNGYADLCRFLVHDHAAVIDILTLRKQ---TPLHLAAEAGQLQVCKLLLDLGASIDAT 150
+++ G DL + ++++ +D +L T LH A AG ++ K L+ G +++A
Sbjct: 44 SSLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 151 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 192
D G P+H AA N +V + + + ++ T D T A
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA 141
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQ---TPLHLAAEAGQLQVCKLLLDLGASIDAT 610
+++ G DL + ++++ +D +L T LH A AG ++ K L+ G +++A
Sbjct: 44 SSLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 611 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIAAGKHCEGM 664
D G P+H AA N +V + + + ++ T D+ A CE M
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY------SDMQTAADKCEEM 147
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL + G +LV ++ + + EG +ALH A G+ ++ L+ +N+
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQT 123
G T LH AA +C+FLV AAV + QT
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 29/145 (20%)
Query: 301 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 360
G+ D V+ ++ V D P+ L ++ G+T LH A +G+ +V+ L+ G
Sbjct: 48 GEFDLVQRIIYEV------DDPS-------LPNDEGITALHNAVCAGHTEIVKFLV-QFG 93
Query: 361 VQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA--------DLLQSADKNGKTCLHIA 412
V V+A +G+ PLH A +V V L+ A D+ +ADK C +
Sbjct: 94 VNVNA-ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK----CEEM- 147
Query: 413 ATHGHLQMVEVLLGQGAEINATDKG 437
G+ Q + L G ++ +KG
Sbjct: 148 -EEGYTQCSQFLYGVQEKMGIMNKG 171
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
+ G T LH A GH ++V+ L+ G +NA D G T LH
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-----------------DGWTPLHC 109
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQT 583
AA +C+FLV AAV + QT
Sbjct: 110 AASCNNVQVCKFLVESGAAVFAMTYSDMQT 139
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 458 LQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 517
L E + N + GH +V L+ ++ +AD +G T LH AA+ ++Q+ + L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 518 GQGAEINA 525
GA + A
Sbjct: 124 ESGAAVFA 131
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKA-- 78
G T L A GH E+V ++ V+ D +G + LH AA ++VC L+ A
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 79 FINSKSRVGRTALHLAAM-NGYADLCRFL 106
F + S + A M GY +FL
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 281
T L A GH +V+ LV+ G + + G+T +H AA + QV + + S A
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 338 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADL 397
TP AA +E + LL VDA ENG L G V LL ADL
Sbjct: 47 TPWWTAARKADEQALSQLLEDR--DVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGADL 103
Query: 398 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTA 445
+ G T LH+AA + ++VE L+ GA+I D+ G ++ A
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 389 LLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATD-KGGARSIHTAAR 447
LL R D + D+NG+T L A G + V +L GA+++ D +GG ++H AA
Sbjct: 64 LLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120
Query: 448 YGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATH 507
Y ++ L++ G ++V + L L+R ++L++ K +
Sbjct: 121 YVRPEVVEALVELGADIEVEDER------GLTALELAR--EILKTTPKGNP--MQFGRRI 170
Query: 508 GHLQMVEVLLGQGAEINATDKVCD 531
G +++ VL GQ E D++ +
Sbjct: 171 GLEKVINVLEGQVFEYAEVDEIVE 194
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 87 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ-TPLHLAAEAGQLQVCKLLLDLGA 145
GRTAL A G +D C L+ + A +D +R T LH+AA + +V + L++LGA
Sbjct: 77 GRTALLFVAGLG-SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 135
Query: 146 SIDATDDQGQKPIHVAAQ 163
I+ D++G + +A +
Sbjct: 136 DIEVEDERGLTALELARE 153
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 547 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ-TPLHLAAEAGQLQVCKLLLDLGA 605
GRTAL A G +D C L+ + A +D +R T LH+AA + +V + L++LGA
Sbjct: 77 GRTALLFVAGLG-SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 135
Query: 606 SIDATDDQGQKPIHVAAQ 623
I+ D++G + +A +
Sbjct: 136 DIEVEDERGLTALELARE 153
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 444 TAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGL-------LLSRA-ADLLQSADK 495
TAAR ++ LL+ + VD N + V GL LL+ A ADL +
Sbjct: 51 TAARKADEQALSQLLEDRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 109
Query: 496 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDK 528
G T LH+AA + ++VE L+ GA+I D+
Sbjct: 110 GGLTALHMAAGYVRPEVVEALVELGADIEVEDE 142
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAVHLAAQNGHNQVLEEMRSSKALNV 284
T L A G VR+L +AGA + + G TA+H+AA +V+E + A
Sbjct: 79 TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138
Query: 285 YSKKLGVTALHVAAYFGQADTVRELLSHVP 314
+ G+TAL +A RE+L P
Sbjct: 139 VEDERGLTALELA---------REILKTTP 159
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEG-RSALHLAAEHGYLKVCDALLTHKAF 79
G T LL G + V + A +D D G +ALH+AA + +V +AL+ A
Sbjct: 77 GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 136
Query: 80 INSKSRVGRTALHLA 94
I + G TAL LA
Sbjct: 137 IEVEDERGLTALELA 151
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 338 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADL 397
TP AA +E + LL VDA ENG L G V LL ADL
Sbjct: 46 TPWWTAARKADEQALSQLLEDR--DVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGADL 102
Query: 398 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTA 445
+ G T LH+AA + ++VE L+ GA+I D+ G ++ A
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 389 LLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATD-KGGARSIHTAAR 447
LL R D + D+NG+T L A G + V +L GA+++ D +GG ++H AA
Sbjct: 63 LLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119
Query: 448 YGHVGIINTLLQKGEKVDV 466
Y ++ L++ G ++V
Sbjct: 120 YVRPEVVEALVELGADIEV 138
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ-TPLHLAAEAGQLQVCK 138
+++ GRTAL A G +D C L+ + A +D +R T LH+AA + +V +
Sbjct: 69 VDAVDENGRTALLFVAGLG-SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 139 LLLDLGASIDATDDQGQKPIHVAAQ 163
L++LGA I+ D++G + +A +
Sbjct: 128 ALVELGADIEVEDERGLTALELARE 152
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 540 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ-TPLHLAAEAGQLQVCK 598
+++ GRTAL A G +D C L+ + A +D +R T LH+AA + +V +
Sbjct: 69 VDAVDENGRTALLFVAGLG-SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 599 LLLDLGASIDATDDQGQKPIHVAAQ 623
L++LGA I+ D++G + +A +
Sbjct: 128 ALVELGADIEVEDERGLTALELARE 152
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 444 TAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGL-------LLSRA-ADLLQSADK 495
TAAR ++ LL+ VD N + V GL LL+ A ADL +
Sbjct: 50 TAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 108
Query: 496 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDK 528
G T LH+AA + ++VE L+ GA+I D+
Sbjct: 109 GGLTALHMAAGYVRPEVVEALVELGADIEVEDE 141
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAVHLAAQNGHNQVLEEMRSSKALNV 284
T L A G VR+L +AGA + + G TA+H+AA +V+E + A
Sbjct: 78 TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 137
Query: 285 YSKKLGVTALHVAAYFGQADTVRELLSHVP 314
+ G+TAL +A RE+L P
Sbjct: 138 VEDERGLTALELA---------REILKTTP 158
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGR-SALHLAAEHGYLKVCDALLTHKAF 79
G T LL G + V + A +D D G +ALH+AA + +V +AL+ A
Sbjct: 76 GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 135
Query: 80 INSKSRVGRTALHLA 94
I + G TAL LA
Sbjct: 136 IEVEDERGLTALELA 150
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 352 VRLLLNSAGVQVDAQTQENGYNPLHL---ACFGGHVTVVGLLLSRAADLLQSADKNGKTC 408
+R +L AG A+ NPL L A G + VV + D Q ++ G T
Sbjct: 1 MRSVLRKAGSPRKARRAR--LNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITA 57
Query: 409 LHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTT 468
LH A + +V+ L+ GA +N+ D G +H AA I L+Q G + TT
Sbjct: 58 LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%)
Query: 25 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKS 84
LL A G +E+V + ++EG +ALH A + D L+T A +NS
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 85 RVGRTALHLAAMNGYADLCRFLVHDHAAVI 114
G T LH AA +C LV AA+
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAIF 114
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 123 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 182
T LH A + L+ GA++++ D G P+H AA N + ++ ++
Sbjct: 56 TALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
Query: 183 ATTKDGNT 190
T DG T
Sbjct: 116 TTLSDGAT 123
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 333 SESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLS 392
+E G+T LH A N ++V L+ +AG V++ +G+ PLH A + L+
Sbjct: 51 NEEGITALHNAICGANYSIVDFLI-TAGANVNS-PDSHGWTPLHCAASCNDTVICMALVQ 108
Query: 393 RAADLLQSADKNGKTCLH 410
A + + +G T
Sbjct: 109 HGAAIFATTLSDGATAFE 126
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 583 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 642
T LH A + L+ GA++++ D G P+H AA N V + L H + +
Sbjct: 56 TALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN-DTVICMALVQHGAAIF 114
Query: 643 ATT 645
ATT
Sbjct: 115 ATT 117
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 454 INTLLQKGEKVDVTTNNLACG-HVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQM 512
+N Q E+ +N CG + ++V L++ A++ S D +G T LH AA+ +
Sbjct: 44 MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVI 102
Query: 513 VEVLLGQGAEINAT 526
L+ GA I AT
Sbjct: 103 CMALVQHGAAIFAT 116
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 125 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVT 182
L AA G+++ + LL+ GA+ +A + G++PI V + VA++ L A P+
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNCAD 74
Query: 183 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA---TPLQLAAEGGHANV 239
T H AA + G ++ L+ R+G AR V +A P+ LA E GH +V
Sbjct: 75 PATL--TRPVHDAARE---GFLDTLVVLHRAG---ARLDVRDAWGRLPVDLAEELGHRDV 126
Query: 240 VRVLVKAGASCTDEN 254
R L A N
Sbjct: 127 ARYLRAAAGGTRGSN 141
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 416 GHLQMVEVLLGQGAEINATDKGG-ARSIHTAARYGHVGIINTLLQKGEKVDV 466
G ++ E+LL GAE N D R +H AAR G + + L + G ++DV
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 125 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL--RAHPSLVT 182
L AA GQ++ + LL+ GA +A + G++PI V + +VA++ L A P+
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA-QVAELLLLHGAEPNCAD 74
Query: 183 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA---TPLQLAAEGGHANV 239
T H AA + G ++ L+ R+G AR V +A P+ LA E GH ++
Sbjct: 75 PATL--TRPVHDAARE---GFLDTLVVLHRAG---ARLDVCDAWGRLPVDLAEEQGHRDI 126
Query: 240 VRVL 243
R L
Sbjct: 127 ARYL 130
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 382 GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGG-AR 440
G V V LL AD + ++ G+ + + G Q+ E+LL GAE N D R
Sbjct: 23 GQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80
Query: 441 SIHTAARYGHVGIINTLLQKGEKVDV 466
+H AAR G + + L + G ++DV
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDV 106
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 472 ACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCD 531
A G V V LL AD + ++ G+ + + G Q+ E+LL GAE N D
Sbjct: 21 ARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADP--- 75
Query: 532 ALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEA 591
A LT +H AA G+ D ++H A +D+ + P+ LA E
Sbjct: 76 ATLTRP-------------VHDAAREGFLDTL-VVLHRAGARLDVCDAWGRLPVDLAEEQ 121
Query: 592 GQLQVCKLL 600
G + + L
Sbjct: 122 GHRDIARYL 130
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 30 NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRT 89
N+ + LV+ ++ N +D +G +ALH AA + LL +A + + + G T
Sbjct: 183 NQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET 242
Query: 90 ALHLA 94
AL +A
Sbjct: 243 ALDIA 247
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 125 LHLA---AEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
LHLA A L + ++ G +DA G +H AA N P+ ++ L+ +LV
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR-ALV 233
Query: 182 TATTKDGNTCAHIAAM-----------QGSVGVIEELMKFDRSGVISARN 220
+ G T IA Q G + D S VIS N
Sbjct: 234 GTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTEN 283
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 58 LHLA---AEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV 113
LHLA A L + D ++ + +++K+ G TALH AA+ D + L+ A V
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 233
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 585 LHLA---AEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 641
LHLA A L + ++ G +DA G +H AA N P+ ++ L+ +LV
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR-ALV 233
Query: 642 TATTKEKERAKDLIAAGKH---CE 662
+ E A D IA KH CE
Sbjct: 234 GTVNEAGETALD-IARKKHHKECE 256
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 30 NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRT 89
N+ + LV+ ++ N +D +G +ALH AA + LL +A + + + G T
Sbjct: 202 NQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET 261
Query: 90 ALHLA 94
AL +A
Sbjct: 262 ALDIA 266
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 58 LHLA---AEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV 113
LHLA A L + D ++ + +++K+ G TALH AA+ D + L+ A V
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 16/220 (7%)
Query: 77 KAFINSKSRV-----GRTALHLA-AMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAE 130
K+F++SK G +A + A A N +C L +A + L L + PLH AA
Sbjct: 16 KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLL---NAGALKNL-LENEFPLHQAAT 71
Query: 131 AGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT 190
++ K+LL G DD+G ++ A + + ++F++ + L T
Sbjct: 72 LEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKT 131
Query: 191 CAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASC 250
+ A V ++ + S + S + + + + + GH + +L+ S
Sbjct: 132 SFYHAVXLNDVSIVSYFL----SEIPSTFDLAILLSCIHITIKNGHVDXXILLLDYXTST 187
Query: 251 TDENKTGFTA-VHLAAQNGHNQVLEEMRSSKALNVYSKKL 289
N F + LA N + L+ + +N+YS L
Sbjct: 188 NTNNSLLFIPDIKLAIDNKDIEXLQALFKYD-INIYSANL 226
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 537 KAFINSKSRV-----GRTALHLA-AMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAE 590
K+F++SK G +A + A A N +C L +A + L L + PLH AA
Sbjct: 16 KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLL---NAGALKNL-LENEFPLHQAAT 71
Query: 591 AGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
++ K+LL G DD+G ++ A + + ++F++
Sbjct: 72 LEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVK 116
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 123 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
TPL A A L C+ LL GA+++ D G+ P+H A +A +FL+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 583 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
TPL A A L C+ LL GA+++ D G+ P+H A +A +FL+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%)
Query: 23 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINS 82
TPL+ A + +L N A V+ D GR LH A G+ + L A + +
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 83 KSRVGRTALHLAAMNGYADLCRFL 106
+ GR L +A AD+ L
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
Query: 314 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN-ENVVRLLLNSAGVQVDAQTQENGY 372
PG+++S P + LG L G + + + + L + A V Q+N
Sbjct: 180 PGSLRSKPEPPSEDLGSL--HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNA- 236
Query: 373 NPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 432
PL A + LL A++ Q AD G+ LH A GH + + L +GA++
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQ-ADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 433 ATDKGGARSIHTAARYGHVGIINTLLQ 459
A D G + A + I+ TLL+
Sbjct: 296 ARDSEGRDPLTIAMETANADIV-TLLR 321
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 52 QEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADL-CRFLVHDH 110
Q+ + L A L C+ LL + A +N GR LH A + G+ L C FL
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL--KR 290
Query: 111 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 155
A + + PL +A E + LL L +A QGQ
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVT-LLRLAKMREAEAAQGQ 334
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 529 VCDALLTHKAFINSKSRVGRTALHLAAMNGYADL-CRFLVHDHAAVIDILTLRKQTPLHL 587
C+ LL + A +N GR LH A + G+ L C FL A + + PL +
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL--KRGADLGARDSEGRDPLTI 307
Query: 588 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKE 647
A E + LL L +A QGQ A + ++ + F SL+ + E
Sbjct: 308 AMETANADIVT-LLRLAKMREAEAAQGQ-----AGDETYLDIFRDF-----SLMASDDPE 356
Query: 648 K--ERAKDL 654
K R+ DL
Sbjct: 357 KLSRRSHDL 365
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 40/213 (18%)
Query: 334 ESGMTPL---HLAAYSGNENVVRLLLNSAGVQVDAQTQ----------ENGYNPLHLACF 380
E+G T L L ++G + + LLL+ A + D+ Q G LH+A
Sbjct: 52 ETGKTCLLKAXLNLHNGQNDTIALLLDVAR-KTDSLKQFVNASYTDSYYKGQTALHIAIE 110
Query: 381 GGHVTVVGLLLSRAADLLQSADKN-------------GKTCLHIAATHGHLQMVEVLLG- 426
+ T+V LL+ AD+ +A+ + G+ L +AA L +V+ LL
Sbjct: 111 RRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170
Query: 427 --QGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLS 484
Q A+I+A D G +H + NT VT+ + ++G L
Sbjct: 171 SWQPADISARDSVGNTVLHALVEVADNTVDNTKF-------VTS---XYNEILILGAKLH 220
Query: 485 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 517
L + ++ G T L +AA+ G + ++ +L
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 32/153 (20%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARV------DVFDQ-EGRSA-------LHLAAEHGY 66
G T L IA R + LV ++ N A V D F + +GR L LAA
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 67 LKVCDALLTHK---AFINSKSRVGRTALH--LAAMNGYADLCRFLVHDHAAVI------- 114
L + LL + A I+++ VG T LH + + D +F+ + ++
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLH 220
Query: 115 ------DILTLRKQTPLHLAAEAGQLQVCKLLL 141
+I + TPL LAA +G++ V +L
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 34/191 (17%)
Query: 301 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL-NSA 359
GQ DT+ LL T AS+ G T LH+A N +V LL+ N A
Sbjct: 68 GQNDTIALLLDVARKTDSLKQFVNASYTDSY--YKGQTALHIAIERRNXTLVTLLVENGA 125
Query: 360 GVQVDA------QTQEN-----GYNPLHLACFGGHVTVVGLLLSRA---ADLLQSADKNG 405
VQ A +T+ G PL LA + +V LL + AD+ + D G
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVG 184
Query: 406 KTCLH---------IAATHGHLQMVEVLLGQGAEINAT-------DKGGARSIHTAARYG 449
T LH + T +L GA+++ T ++ G + AA G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244
Query: 450 HVGIINTLLQK 460
+G++ +LQ+
Sbjct: 245 KIGVLAYILQR 255
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 123 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
TPL A A L C+ LL GA+++ D G+ P+H A +A +FL+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 583 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
TPL A A L C+ LL GA+++ D G+ P+H A +A +FL+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%)
Query: 23 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINS 82
TPL+ A + +L N A V+ D GR LH A G+ + L A + +
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 83 KSRVGRTALHLAAMNGYADLCRFL 106
+ GR L +A AD+ L
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 369 ENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 428
++ PL A + LL A++ Q AD G+ LH A GH + + L +G
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQ-ADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 429 AEINATDKGGARSIHTAARYGHVGIINTLLQ 459
A++ A D G + A + I+ TLL+
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIV-TLLR 321
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 52 QEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADL-CRFLVHDH 110
Q+ + L A L C+ LL + A +N GR LH A + G+ L C FL
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL--KR 290
Query: 111 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 155
A + + PL +A E + LL L +A QGQ
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVT-LLRLAKMREAEAAQGQ 334
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 529 VCDALLTHKAFINSKSRVGRTALHLAAMNGYADL-CRFLVHDHAAVIDILTLRKQTPLHL 587
C+ LL + A +N GR LH A + G+ L C FL A + + PL +
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL--KRGADLGARDSEGRDPLTI 307
Query: 588 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKE 647
A E + LL L +A QGQ A + ++ + F SL+ + E
Sbjct: 308 AMETANADIVT-LLRLAKMREAEAAQGQ-----AGDETYLDIFRDF-----SLMASDDPE 356
Query: 648 K--ERAKDL 654
K R+ DL
Sbjct: 357 KLSRRSHDL 365
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 123 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 175
TPL A A L C+ LL GA+++ D G+ P+H A +A +FL+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 583 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
TPL A A L C+ LL GA+++ D G+ P+H A +A +FL+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%)
Query: 23 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINS 82
TPL+ A + +L N A V+ D GR LH A G+ + L A + +
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 83 KSRVGRTALHLAAMNGYADLCRFL 106
+ GR L +A AD+ L
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 6/147 (4%)
Query: 314 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN-ENVVRLLLNSAGVQVDAQTQENGY 372
PG ++S P + LG L G + + + + L + A V Q+N
Sbjct: 180 PGDLRSKPEPPSEDLGSL--HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNA- 236
Query: 373 NPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 432
PL A + LL A++ Q AD G+ LH A GH + + L +GA++
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQ-ADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 433 ATDKGGARSIHTAARYGHVGIINTLLQ 459
A D G + A + I+ TLL+
Sbjct: 296 ARDSEGRDPLTIAMETANADIV-TLLR 321
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 52 QEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADL-CRFLVHDH 110
Q+ + L A L C+ LL + A +N GR LH A + G+ L C FL
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL--KR 290
Query: 111 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 155
A + + PL +A E + LL L +A QGQ
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVTLLR-LAKMREAEAAQGQ 334
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 529 VCDALLTHKAFINSKSRVGRTALHLAAMNGYADL-CRFLVHDHAAVIDILTLRKQTPLHL 587
C+ LL + A +N GR LH A + G+ L C FL A + + PL +
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL--KRGADLGARDSEGRDPLTI 307
Query: 588 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKE 647
A E + LL L +A QGQ A + ++ + F SL+ + E
Sbjct: 308 AMETANADIVTLLR-LAKMREAEAAQGQ-----AGDETYLDIFRDF-----SLMASDDPE 356
Query: 648 K--ERAKDL 654
K R+ DL
Sbjct: 357 KLSRRSHDL 365
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 416 GHLQMVEVLLGQGAEINATDKGG-ARSIHTAARYGHVGIINTLLQKGEKVDV 466
G ++ E+LL GAE N D R +H AAR G + + L + G ++DV
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106
>pdb|3OIC|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Apo Form)
pdb|3OIC|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Apo Form)
pdb|3OID|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|B Chain B, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|C Chain C, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
Length = 258
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 265 AQNGHNQVLEEMRSSKALNVYS---KKLGVTALHVAAYFGQADTVRELLSHVPGT 316
A+NG+N V+ RS KA + +KLGV L V A GQ ++E+ + T
Sbjct: 25 AENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDET 79
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 74 LTHKAFINSKSRVGRTALHLAAMN---GYADLCRFLVHDHAAVIDILTLRKQTPLHLAAE 130
LT K + + TALHLA + + FLV + + +D T + T LH
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCL 214
Query: 131 AGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 176
+ KLLL ASI+ ++ G+ P+ +A + ++ +A
Sbjct: 215 TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 534 LTHKAFINSKSRVGRTALHLAAMN---GYADLCRFLVHDHAAVIDILTLRKQTPLHLAAE 590
LT K + + TALHLA + + FLV + + +D T + T LH
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCL 214
Query: 591 AGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 636
+ KLLL ASI+ ++ G+ P+ +A + ++ +A
Sbjct: 215 TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 28/154 (18%)
Query: 120 RKQTPLHLAAEAGQLQVCKLLLDLGASIDA-------TDDQ------GQKPIHVAAQNNF 166
R + LH+A E LQ KLL++ GA++ A Q G+ P+ +AA
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQ 153
Query: 167 PEVAQIFLRA--HPSLVTATTKDGNTCAH-IAAMQGSVGVIEELMKFDRSGVISARNRVT 223
+V L P+ + AT GNT H + + + L+ G++ A R+
Sbjct: 154 WDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLC 213
Query: 224 ------------EATPLQLAAEGGHANVVRVLVK 245
+ TPL+LAA+ G + R +++
Sbjct: 214 PTVQLEDIRNLQDLTPLKLAAKEGKIEIFRHILQ 247
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 21/165 (12%)
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS------KALNVYSKK-------LGVTAL 294
A CTDE G +A+H+A + Q ++ + + +A + +K G L
Sbjct: 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPL 140
Query: 295 HVAAYFGQADTVRELLS--HVPGTVKSDPPTGASFLGELGSESGMTP----LHLAAYSGN 348
+AA Q D V LL H P ++++ G + L L + +P L + Y G
Sbjct: 141 SLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL 200
Query: 349 ENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
+ L + VQ++ + G PL LA G + + +L R
Sbjct: 201 LQMGARLCPT--VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
G+T LHIA VE+L+ QGA+++A +G
Sbjct: 91 GQTALHIAIERRCKHYVELLVAQGADVHAQARG 123
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 194 IAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG-----A 248
+AA+ G ++ L S I + +LAAE GH +V+ L + A
Sbjct: 98 VAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIXA 157
Query: 249 SCTDENKTGFTAVHLAAQNGHNQVLEEM 276
EN + A LAA+NGH VL +
Sbjct: 158 XIQAEN---YHAFRLAAENGHLHVLNRL 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,197,289
Number of Sequences: 62578
Number of extensions: 1107322
Number of successful extensions: 5560
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2398
Number of HSP's gapped (non-prelim): 1238
length of query: 1015
length of database: 14,973,337
effective HSP length: 108
effective length of query: 907
effective length of database: 8,214,913
effective search space: 7450926091
effective search space used: 7450926091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)