RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14874
(1015 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 359 bits (925), Expect = e-115
Identities = 142/547 (25%), Positives = 219/547 (40%), Gaps = 116/547 (21%)
Query: 76 HKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQ 135
G T LH+A+ G+ + + L+ A ++ ++ +TPLH+AA AG +
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLL-QRGASPNVSNVKVETPLHMAARAGHTE 61
Query: 136 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIA 195
V K LL A ++A Q P+H AA+ + ++ L + + T G+T
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL-ENNANPNLATTAGHT----- 115
Query: 196 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 255
PL +AA GH V L++ AS K
Sbjct: 116 -------------------------------PLHIAAREGHVETVLALLEKEASQACMTK 144
Query: 256 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVP 314
GFT +H+AA+ G +V E + A + + K G+T LHVA + D V+ LL
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDA-HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-- 201
Query: 315 GTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNP 374
G S + +G TPLH+AA V R LL G +A++ G P
Sbjct: 202 ---------GGSP--HSPAWNGYTPLHIAAKQNQVEVARSLL-QYGGSANAES-VQGVTP 248
Query: 375 LHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINAT 434
LHLA GH +V LLLS+ A+ +K+G T LH+ A GH+ + +VL+ G ++AT
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 307
Query: 435 DKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSAD 494
+ G +H A+ YG++ ++ LLQ V+
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK--------------------------T 341
Query: 495 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLA 554
K G + LH AA GH +V +LL GA N G T L +A
Sbjct: 342 KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS-----------------DGTTPLAIA 384
Query: 555 AMNGYADLCRFL--VHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 612
GY + L V D + + + + + +LD+ D
Sbjct: 385 KRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV---------DEILDVSE------D 429
Query: 613 QGQKPIH 619
+G++ I
Sbjct: 430 EGEELIS 436
Score = 355 bits (913), Expect = e-113
Identities = 137/477 (28%), Positives = 219/477 (45%), Gaps = 58/477 (12%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
G TPL +A GH+ +V +L A +V + + + LH+AA G+ +V LL
Sbjct: 8 GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
+KA +N+K++ +T LH AA G+ ++ + L+ ++ A ++ T TPLH+AA G +
Sbjct: 68 QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL-ENNANPNLATTAGHTPLHIAAREGHV 126
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI 194
+ LL+ AS +G P+HVAA+ VA++ L + A K+G
Sbjct: 127 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL-ERDAHPNAAGKNGL----- 180
Query: 195 AAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN 254
TPL +A + ++V++L+ G S
Sbjct: 181 -------------------------------TPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209
Query: 255 KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHV 313
G+T +H+AA+ +V + + ++ GVT LH+AA G A+ V LLS
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVALLLSK- 267
Query: 314 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYN 373
A+ LG++SG+TPLHL A G+ V +L+ GV VDA T GY
Sbjct: 268 ----------QANG--NLGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATT-RMGYT 313
Query: 374 PLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINA 433
PLH+A G++ +V LL AD + + K G + LH AA GH +V +LL GA N
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372
Query: 434 TDKGGARSIHTAARYGHVGIINTLLQKGEKV-DVT-TNNLACGHVTVVGLLLSRAAD 488
G + A R G++ + + L ++ V ++ V +L + D
Sbjct: 373 VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSED 429
Score = 350 bits (901), Expect = e-111
Identities = 138/448 (30%), Positives = 212/448 (47%), Gaps = 51/448 (11%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL +A+ GH +V+ L++ GAS N T +H+AA+ GH +V + + +KA V
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA-KVN 74
Query: 286 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 344
+K K T LH AA G + V+ LL + A+ L + +G TPLH+AA
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLEN-----------NANP--NLATTAGHTPLHIAA 121
Query: 345 YSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKN 404
G+ V LL T + G+ PLH+A G V V LLL R A +A KN
Sbjct: 122 REGHVETVLALL-EKEASQACMT-KKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKN 178
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
G T LH+A H +L +V++LL +G ++ G +H AA+ V + +LLQ G
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 465 DVTTNN------LAC--GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 516
+ + LA GH +V LLLS+ A+ +K+G T LH+ A GH+ + +VL
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVL 297
Query: 517 LGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDI 576
+ G ++AT ++ G T LH+A+ G L +FL+ H A ++
Sbjct: 298 IKHGVMVDATTRM-----------------GYTPLHVASHYGNIKLVKFLL-QHQADVNA 339
Query: 577 LTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR- 635
T +PLH AA+ G + LLL GAS + G P+ +A + + V +
Sbjct: 340 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 399
Query: 636 -AHPSLVTATTKEK----ERAKDLIAAG 658
S V + K + E +++
Sbjct: 400 TDETSFVLVSDKHRMSFPETVDEILDVS 427
Score = 253 bits (650), Expect = 2e-75
Identities = 92/301 (30%), Positives = 132/301 (43%), Gaps = 47/301 (15%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
ESG+TPLH+A++ G+ +V+ LL G + PLH+A GH V LL
Sbjct: 12 ESGLTPLHVASFMGHLPIVKNLL-QRGASPNVSN-VKVETPLHMAARAGHTEVAKYLLQN 69
Query: 394 AADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGI 453
A + + K+ +T LH AA GH MV++LL A N G +H AAR GHV
Sbjct: 70 KAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVET 128
Query: 454 INTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMV 513
+ LL+K K G T LH+AA +G +++
Sbjct: 129 VLALLEKEASQA--------------------------CMTKKGFTPLHVAAKYGKVRVA 162
Query: 514 EVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV 573
E+LL + A NA K G T LH+A + D+ + L+
Sbjct: 163 ELLLERDAHPNAAGKN-----------------GLTPLHVAVHHNNLDIVKLLL-PRGGS 204
Query: 574 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
TPLH+AA+ Q++V + LL G S +A QG P+H+AAQ E+ +
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Query: 634 L 634
L
Sbjct: 265 L 265
Score = 225 bits (575), Expect = 7e-65
Identities = 79/303 (26%), Positives = 145/303 (47%), Gaps = 19/303 (6%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
T G+TPL +A G + + +L A + + G + LH+A H L + L
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L +S + G T LH+AA ++ R L+ + + +++ TPLHLAA+ G
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL-QYGGSANAESVQGVTPLHLAAQEGH 257
Query: 134 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAH 193
++ LLL A+ + + G P+H+ AQ VA + ++ V ATT+ G T H
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLH 316
Query: 194 IAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 252
+A+ G++ +++ L++ ++A+ + +PL AA+ GH ++V +L+K GAS +
Sbjct: 317 VASHYGNIKLVKFLLQ---HQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372
Query: 253 ENKTGFTAVHLAAQNGHNQVLE--EMRSSKALNVYSK-KLGVTALHVAAYFGQADTVREL 309
+ G T + +A + G+ V + ++ + + V K ++ TV E+
Sbjct: 373 VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEI 423
Query: 310 LSH 312
L
Sbjct: 424 LDV 426
Score = 111 bits (279), Expect = 7e-26
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
++ T +G+TPL +A + G+++LV +L + A V+ + G S LH AA+ G+ + L
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFL--VHDHAAVIDILTLRKQTPLHLAAEA 131
L + A N S G T L +A GY + L V D + + + + +
Sbjct: 364 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV--- 420
Query: 132 GQLQVCKLLLDLGASIDATDDQGQKPIH 159
+LD+ D+G++ I
Sbjct: 421 ------DEILDVSE------DEGEELIS 436
Score = 102 bits (257), Expect = 5e-23
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 536 HKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQ 595
G T LH+A+ G+ + + L+ A ++ ++ +TPLH+AA AG +
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLL-QRGASPNVSNVKVETPLHMAARAGHTE 61
Query: 596 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL- 654
V K LL A ++A Q P+H AA+ + ++ L + + T L
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL-ENNANPNLATTAGHTP--LH 118
Query: 655 IAAGKHCEGMATELLALAAGAD 676
IAA + L L A
Sbjct: 119 IAAREGHVETV-LAL-LEKEAS 138
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 272 bits (698), Expect = 4e-83
Identities = 58/403 (14%), Positives = 119/403 (29%), Gaps = 68/403 (16%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
+ +AA G + VR L++ G S T +N+ G TA+HLA + G + + S
Sbjct: 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE-VHS 80
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 345
G +H+A + D V L+ E G P L
Sbjct: 81 LWH-GQKPIHLAVMANKTDLVVALVEG-------------------AKERGQMPESLLNE 120
Query: 346 SGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGG--HVTVVGLLLSRAADLLQSADK 403
V + + G LH G ++ ++ +L+ A + DK
Sbjct: 121 CDEREVNEIGSHV--------KHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDK 171
Query: 404 NGKTCLHIAATHGHLQMVEVLL-----GQGAEINATDKGGARSIHTAARYGHVGIINTLL 458
+T L A + + +++++ ++ +K G +H A + +
Sbjct: 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV 231
Query: 459 QKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLG 518
+ G V+ D L+++ + + + LL
Sbjct: 232 EMGIDVN--------------------------MEDNEHTVPLYLSVRAAMVLLTKELLQ 265
Query: 519 QGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILT 578
+ + + V + AA ++ + L + +
Sbjct: 266 KTDVFLIQA----CPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ-EKLDEVVRSL 320
Query: 579 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 621
+ V ++ L A + + V+
Sbjct: 321 NTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 261 bits (670), Expect = 4e-79
Identities = 69/423 (16%), Positives = 131/423 (30%), Gaps = 82/423 (19%)
Query: 41 LNNHARVDV--FDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNG 98
+ + +++ D E +H+AA G L+ ++R G TALHLA G
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
Query: 99 YADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 158
D ++L Q P+HLA A + + L++ ++GQ P
Sbjct: 65 CVDTAKYLA-SVGE--VHSLWHGQKPIHLAVMANKTDLVVALVEGAK------ERGQMPE 115
Query: 159 HVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA 218
+ + + EV +I G T H G
Sbjct: 116 SLLNECDEREVNEI-------GSHVKHCKGQTALHWCVGLGP------------------ 150
Query: 219 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV----LE 274
+ ++++LV+ GAS T ++K T + A + + + ++
Sbjct: 151 ----------------EYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMD 194
Query: 275 EMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGS 333
+ S +L + K G + LH A D + G +
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-----------GIDV--NMED 241
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN-----------GYNPLHLACFGG 382
PL+L+ + + + LL V + + + + A
Sbjct: 242 NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPS 301
Query: 383 HVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSI 442
V+ LL + + + + G + + L A + + ARS
Sbjct: 302 KQEVLQLLQEKLDE-VVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSS 360
Query: 443 HTA 445
+
Sbjct: 361 AVS 363
Score = 257 bits (659), Expect = 2e-77
Identities = 59/453 (13%), Positives = 121/453 (26%), Gaps = 130/453 (28%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
+H+AA GQ + L++ G S + G +H+A + + A+ +
Sbjct: 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS-VGEVH 79
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
+ G P+ LA ++V
Sbjct: 80 SL--WHGQK------------------------------------PIHLAVMANKTDLVV 101
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 300
LV+ + G L + +V E + + K G TALH
Sbjct: 102 ALVEGAK------ERGQMPESLLNECDEREVNE-------IGSHVKHCKGQTALHWCVGL 148
Query: 301 GQA--DTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN- 357
G + ++ L+ GAS ++ TPL A N + L+++
Sbjct: 149 GPEYLEMIKILVQL-----------GASP--TAKDKADETPLMRAMEFRNREALDLMMDT 195
Query: 358 ---SAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAAT 414
+ +++D + G + LH A V + D+ D L+++
Sbjct: 196 VPSKSSLRLDYAN-KQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVR 253
Query: 415 HGHLQMVEVLLGQGAE-------------INATDKGGARSIHTAARYGHVGIINTLLQKG 461
+ + + LL + + + AA ++ L +K
Sbjct: 254 AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313
Query: 462 EKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
++V + G + + L A
Sbjct: 314 DEVVRS--------------------------LNTGAGGAVKRKKKAAPAVKRMKLAPSA 347
Query: 522 EINATDKVCDALLTHKAFINSKSRVGRTALHLA 554
+ + + ++
Sbjct: 348 PVRTRSR-----------------SRARSSAVS 363
Score = 220 bits (563), Expect = 4e-64
Identities = 58/390 (14%), Positives = 111/390 (28%), Gaps = 86/390 (22%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
+ M +H+AA G + VR L+ GV Q G LHLAC G V L S
Sbjct: 18 DENMEKIHVAARKGQTDEVRRLI-ETGVSPTIQN-RFGCTALHLACKFGCVDTAKYLASV 75
Query: 394 AADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGI 453
+ +G+ +H+A +V L+ E +
Sbjct: 76 GEVH---SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQM------PESLLNECDEREV 126
Query: 454 INTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHG--HLQ 511
++ G+T LH G +L+
Sbjct: 127 N--------EIGSHVK------------------------HCKGQTALHWCVGLGPEYLE 154
Query: 512 MVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV---- 567
M+++L+ GA A DK T L A + ++
Sbjct: 155 MIKILVQLGASPTAKDKA-----------------DETPLMRAMEFRNREALDLMMDTVP 197
Query: 568 HDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFP 627
+ +D + + LH A V +++G ++ D++ P++++ +
Sbjct: 198 SKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMV 257
Query: 628 EVAQIFLRAHPSLVTATTKEKERAKDL-----------IAAGKHCEGMATELLALAAGA- 675
+ + L+ + L AA + + +LL
Sbjct: 258 LLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL-QLL-QEKLDE 315
Query: 676 ----DSAGR--ILTATDRRNIEFLDVLIEN 699
+ G + + + +
Sbjct: 316 VVRSLNTGAGGAVKRKKKAAPAVKRMKLAP 345
Score = 183 bits (468), Expect = 3e-51
Identities = 43/300 (14%), Positives = 91/300 (30%), Gaps = 43/300 (14%)
Query: 8 TEISKAL-NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG- 65
T++ AL G P + E+ V +G++ALH G
Sbjct: 97 TDLVVALVEGAKERGQMPESLLNECDEREVNE------IGSHVKHCKGQTALHWCVGLGP 150
Query: 66 -YLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV----HDHAAVIDILTLR 120
YL++ L+ A +K + T L A + ++ + +D +
Sbjct: 151 EYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL--RAHP 178
+ LH A V +++G ++ D++ P++++ + + + L
Sbjct: 211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270
Query: 179 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN 238
+ +G T +RV + AA+
Sbjct: 271 LIQACPYHNGTTVLP--------------------------DRVVWLDFVPAAADPSKQE 304
Query: 239 VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVA 297
V+++L + TG + V + A + S+ + V+
Sbjct: 305 VLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRS-RARSSAVS 363
Score = 177 bits (452), Expect = 3e-49
Identities = 51/246 (20%), Positives = 84/246 (34%), Gaps = 40/246 (16%)
Query: 400 SADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQ 459
+D +H+AA G V L+ G ++ G ++H A ++G V L
Sbjct: 15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74
Query: 460 KGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQ 519
GE +G+ +H+A +V L+
Sbjct: 75 VGEVHS----------------------------LWHGQKPIHLAVMANKTDLVVALVEG 106
Query: 520 GAEINATD----KVCDALLTHKAFINSKSRVGRTALHLAAMNG--YADLCRFLVHDHAAV 573
E CD ++ + K G+TALH G Y ++ + LV A
Sbjct: 107 AKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILV-QLGAS 165
Query: 574 IDILTLRKQTPLHLAAEAGQLQVCKLLLDL-----GASIDATDDQGQKPIHVAAQNNFPE 628
+TPL A E + L++D +D + QG +H A N+ +
Sbjct: 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED 225
Query: 629 VAQIFL 634
VA F+
Sbjct: 226 VAMRFV 231
Score = 90.7 bits (226), Expect = 1e-19
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 536 HKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQ 595
K +H+AA G D R L+ + I T LHLA + G +
Sbjct: 9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACKFGCVD 67
Query: 596 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
K L +G GQKPIH+A N ++ +
Sbjct: 68 TAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALV 104
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 256 bits (656), Expect = 3e-77
Identities = 93/376 (24%), Positives = 139/376 (36%), Gaps = 58/376 (15%)
Query: 255 KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELL-SHV 313
+ G +A+ LA + V + + L AA G + + LL
Sbjct: 2 EFGKSALDLADPSAKA-------------VLTGEYKKDELLEAARSGNEEKLMALLTPL- 47
Query: 314 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYN 373
+ TPLHLAA +V+LLL G V A+ + G
Sbjct: 48 ----------NVNC--HASDGRKSTPLHLAAGYNRVRIVQLLL-QHGADVHAKD-KGGLV 93
Query: 374 PLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINA 433
PLH AC GH V LLL A + + D T LH AA+ +++ +LL GA+
Sbjct: 94 PLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL 152
Query: 434 TDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLAC-GHVTVVGLLLSRAADLLQS 492
+ G ++ A + + + A + V L+
Sbjct: 153 VNCHGKSAVDMAPTPELRERLTYEFKGH-----SLLQAAREADLAKVKKTLALEIINF-K 206
Query: 493 ADKNGKTCLHIAATHGH---LQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRT 549
++ +T LH A H Q+ E+LL +GA +N +K T
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD-----------------FMT 249
Query: 550 ALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 609
LH+AA + D+ L H A ++ L QT LH AA AG LQ C+LLL G+
Sbjct: 250 PLHVAAERAHNDVMEVLH-KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI 308
Query: 610 TDDQGQKPIHVAAQNN 625
QG + +
Sbjct: 309 ISLQGFTAAQMGNEAV 324
Score = 255 bits (654), Expect = 6e-77
Identities = 92/412 (22%), Positives = 154/412 (37%), Gaps = 79/412 (19%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
+ L LA A + + + AA++G+ + L + + +N +
Sbjct: 6 SALDLADPSAKAVL-------------TGEYKKDELLEAARSGNEEKLMALLTPLNVNCH 52
Query: 286 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 344
+ T LH+AA + + V+ LL H GA + G+ PLH A
Sbjct: 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQH-----------GADV--HAKDKGGLVPLHNAC 99
Query: 345 YSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKN 404
G+ V LLL G V+A + PLH A V V LLLS AD + +
Sbjct: 100 SYGHYEVTELLL-KHGACVNAMD-LWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCH 156
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
GK+ + +A T + + + + AAR + + L
Sbjct: 157 GKSAVDMAPTPELRERLTYEFKGHS------------LLQAAREADLAKVKKTLALEIIN 204
Query: 465 DVTTNN------LAC-----GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMV 513
+ A V LLL + A++ +K+ T LH+AA H ++
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVM 263
Query: 514 EVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV 573
EVL GA++NA D + G+TALH AA+ G+ CR L+ + +
Sbjct: 264 EVLHKHGAKMNALDSL-----------------GQTALHRAALAGHLQTCRLLL-SYGSD 305
Query: 574 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN 625
I++L+ T + E + +L + +D + A++
Sbjct: 306 PSIISLQGFTAAQMGNE-----AVQQILSESTPMRTSDVDY--RLLEASKAG 350
Score = 247 bits (634), Expect = 3e-74
Identities = 87/430 (20%), Positives = 145/430 (33%), Gaps = 84/430 (19%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG-YLKVCDALLTHKAF 79
G + L + + A+ + + + L AA G K+ L
Sbjct: 4 GKSALDL-------------ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN 50
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 139
++ T LHLAA + + L+ H A + PLH A G +V +L
Sbjct: 51 CHASDGRKSTPLHLAAGYNRVRIVQLLL-QHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109
Query: 140 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 199
LL GA ++A D P+H AA N EV + L +H + T G + +A
Sbjct: 110 LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLL-SHGADPTLVNCHGKSAVDMAPTPE 168
Query: 200 SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFT 259
+ K + LQ A E V+ + + ++ T
Sbjct: 169 LRERLTYEFKGH--------------SLLQAARE-ADLAKVKKTLALEIINFKQPQSHET 213
Query: 260 AVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKS 319
A+H A + H + + LL
Sbjct: 214 ALHCAVASLHPKRKQ------------------------------VAELLLRK------- 236
Query: 320 DPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLAC 379
GA+ ++ MTPLH+AA + +V+ +L G +++A G LH A
Sbjct: 237 ----GANV--NEKNKDFMTPLHVAAERAHNDVMEVLH-KHGAKMNALD-SLGQTALHRAA 288
Query: 380 FGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGA 439
GH+ LLLS +D G T + + V+ +L + + +D
Sbjct: 289 LAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVDYR 342
Query: 440 RSIHTAARYG 449
+ A++ G
Sbjct: 343 --LLEASKAG 350
Score = 242 bits (620), Expect = 3e-72
Identities = 98/477 (20%), Positives = 154/477 (32%), Gaps = 135/477 (28%)
Query: 87 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL-QVCKLLLDLGA 145
G++AL LA D +A + K+ L AA +G ++ LL L
Sbjct: 4 GKSALDLA--------------DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV 49
Query: 146 SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 205
+ A+D + P+H+AA N + Q+ L H + V A K G
Sbjct: 50 NCHASDGRKSTPLHLAAGYNRVRIVQLLL-QHGADVHAKDKGGLV--------------- 93
Query: 206 ELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 265
PL A GH V +L+K GA + FT +H AA
Sbjct: 94 ---------------------PLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAA 132
Query: 266 QNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTG 324
+V + S A + G +A+ +A + +
Sbjct: 133 SKNRVEVCSLLLSHGA-DPTLVNCHGKSAVDMAPTPELRERLTYEFK------------- 178
Query: 325 ASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGH- 383
G + L AA + V+ L + Q ++ LH A H
Sbjct: 179 -----------GHSLLQ-AAREADLAKVKKTLALEII-NFKQP-QSHETALHCAVASLHP 224
Query: 384 --VTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARS 441
V LLL + A++ +K+ T LH+AA H ++EVL GA++NA D G +
Sbjct: 225 KRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTA 283
Query: 442 IHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCL 501
+H AA GH+ LL G + G T
Sbjct: 284 LHRAALAGHLQTCRLLLSYGSDPSII--------------------------SLQGFTAA 317
Query: 502 HIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNG 558
+ + V+ +L + + +D L A+ G
Sbjct: 318 QMGN-----EAVQQILSESTPMRTSDV-------------------DYRLLEASKAG 350
Score = 241 bits (618), Expect = 7e-72
Identities = 105/459 (22%), Positives = 154/459 (33%), Gaps = 116/459 (25%)
Query: 54 GRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNG-YADLCRFLVHDHAA 112
G+SAL L A + L AA +G L L
Sbjct: 4 GKSALDL-------------ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLT-PLNV 49
Query: 113 VIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQI 172
RK TPLHLAA ++++ +LLL GA + A D G P+H A EV ++
Sbjct: 50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109
Query: 173 FLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAA 232
L H + V A TPL AA
Sbjct: 110 LL-KHGACVNAMDLWQF------------------------------------TPLHEAA 132
Query: 233 EGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVT 292
V +L+ GA T N G +AV +A + L G +
Sbjct: 133 SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK-----------GHS 181
Query: 293 ALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN-- 350
L AA V++ L+ K +S T LH A S +
Sbjct: 182 LLQ-AAREADLAKVKKTLALEIINFKQP-------------QSHETALHCAVASLHPKRK 227
Query: 351 -VVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
V LLL G V+ + ++ PLH+A H V+ +L A + + D G+T L
Sbjct: 228 QVAELLL-RKGANVNEKN-KDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTAL 284
Query: 410 HIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTN 469
H AA GHLQ +LL G++ + G TAA+ G+ + +L + +
Sbjct: 285 HRAALAGHLQTCRLLLSYGSDPSIISLQG----FTAAQMGNE-AVQQILSESTPMR---- 335
Query: 470 NLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHG 508
++D + + L A+ G
Sbjct: 336 ----------------------TSDVDYR--LLEASKAG 350
Score = 237 bits (606), Expect = 3e-70
Identities = 81/308 (26%), Positives = 121/308 (39%), Gaps = 36/308 (11%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
E L AA SGNE + LL V A PLHLA V +V LLL
Sbjct: 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASD-GRKSTPLHLAAGYNRVRIVQLLLQH 80
Query: 394 AADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGI 453
AD+ + DK G LH A ++GH ++ E+LL GA +NA D +H AA V +
Sbjct: 81 GADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEV 139
Query: 454 INTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMV 513
+ LL G AD + +GK+ + +A T + +
Sbjct: 140 CSLLLSHG-------------------------ADP-TLVNCHGKSAVDMAPTPELRERL 173
Query: 514 EVLLGQGAEINAT----DKVCDALLTHKAFINSKSRVGRTALHLAAMNGYA---DLCRFL 566
+ + A L + + + TALH A + + + L
Sbjct: 174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL 233
Query: 567 VHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNF 626
+ A ++ TPLH+AAE V ++L GA ++A D GQ +H AA
Sbjct: 234 L-RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH 292
Query: 627 PEVAQIFL 634
+ ++ L
Sbjct: 293 LQTCRLLL 300
Score = 200 bits (510), Expect = 5e-57
Identities = 80/405 (19%), Positives = 135/405 (33%), Gaps = 109/405 (26%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ TPL +A + +V +L + A V D+ G LH A +G+ +V + LL
Sbjct: 52 HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLL 111
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
H A +N+ T LH AA +
Sbjct: 112 KHGACVNAMDLWQFTPLHEAASKNR----------------------------------V 137
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI 194
+VC LLL GA + G+ + +A E G++
Sbjct: 138 EVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF------------KGHS-LLQ 184
Query: 195 AAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN---VVRVLVKAGASCT 251
AA + + +++ + + + + + T L A H V +L++ GA+
Sbjct: 185 AAREADLAKVKKTL--ALEIINFKQPQ-SHETALHCAVASLHPKRKQVAELLLRKGANVN 241
Query: 252 DENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLS 311
++NK T +H+AA+ HN D + L
Sbjct: 242 EKNKDFMTPLHVAAERAHN---------------------------------DVMEVLHK 268
Query: 312 HVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENG 371
H GA G T LH AA +G+ RLLL S G + G
Sbjct: 269 H-----------GAKM--NALDSLGQTALHRAALAGHLQTCRLLL-SYGSDPSIISL-QG 313
Query: 372 YNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHG 416
+ + V +LS + ++++D + + L A+ G
Sbjct: 314 FTAAQMG-----NEAVQQILSESTP-MRTSDVDYR--LLEASKAG 350
Score = 179 bits (457), Expect = 5e-50
Identities = 73/338 (21%), Positives = 118/338 (34%), Gaps = 75/338 (22%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ + G PL AC+ GH E+ +L + A V+ D + LH AA ++VC LL
Sbjct: 85 HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLL 144
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
+H A + G++A+ +A + + + + L A E L
Sbjct: 145 SHGADPTLVNCHGKSAVDMAPTPELRERLTYE------------FKGHSLLQAARE-ADL 191
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQN---NFPEVAQIFLRAHPSLVTATTKDGNTC 191
K L L + +H A + +VA++ LR + V KD
Sbjct: 192 AKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFM-- 248
Query: 192 AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCT 251
TPL +AAE H +V+ VL K GA
Sbjct: 249 ----------------------------------TPLHVAAERAHNDVMEVLHKHGAKMN 274
Query: 252 DENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELL 310
+ G TA+H AA GH Q + S + + G TA + + V+++L
Sbjct: 275 ALDSLGQTALHRAALAGHLQTCRLLLSYGS-DPSIISLQGFTAAQMG-----NEAVQQIL 328
Query: 311 SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN 348
S + + L A+ +G+
Sbjct: 329 SE-----------ST----PMRTSDVDYRLLEASKAGD 351
Score = 157 bits (399), Expect = 3e-42
Identities = 56/256 (21%), Positives = 96/256 (37%), Gaps = 56/256 (21%)
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGE 462
+ GK+ L L A+ T + + AAR G+
Sbjct: 2 EFGKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGN------------ 36
Query: 463 KVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAE 522
++ LL + ++D T LH+AA + +++V++LL GA+
Sbjct: 37 ------------EEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 523 INATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ 582
++A DK G LH A G+ ++ L+ H A ++ + L +
Sbjct: 84 VHAKDKG-----------------GLVPLHNACSYGHYEVTELLL-KHGACVNAMDLWQF 125
Query: 583 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 642
TPLH AA +++VC LLL GA + G+ + +A E + H L
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA 185
Query: 643 ATTKEKERAKDLIAAG 658
A + + K +A
Sbjct: 186 AREADLAKVKKTLALE 201
Score = 125 bits (317), Expect = 2e-31
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 13 ALNKQTSIGWTPLLIACNRGHM---ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 69
KQ T L A H ++ +L A V+ +++ + LH+AAE + V
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDV 262
Query: 70 CDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAA 129
+ L H A +N+ +G+TALH AA+ G+ CR L+ + + I++L+ T +
Sbjct: 263 MEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL-SYGSDPSIISLQGFTAAQMGN 321
Query: 130 EAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN 165
E + +L + +D + A++
Sbjct: 322 E-----AVQQILSESTPMRTSDVDY--RLLEASKAG 350
Score = 93.7 bits (234), Expect = 1e-20
Identities = 44/146 (30%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNG-YADLCRFLVHDHAAVIDILTLRKQTPLHLAAEA 591
L A + L AA +G L L RK TPLHLAA
Sbjct: 10 LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLT-PLNVNCHASDGRKSTPLHLAAGY 68
Query: 592 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERA 651
++++ +LLL GA + A D G P+H A EV ++ L H + V A +
Sbjct: 69 NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLL-KHGACVNAMDLWQFTP 127
Query: 652 KDL-IAAGKHCEGMATELLALAAGAD 676
L AA K+ + LL L+ GAD
Sbjct: 128 --LHEAASKNRVEVC-SLL-LSHGAD 149
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 244 bits (624), Expect = 2e-72
Identities = 70/392 (17%), Positives = 130/392 (33%), Gaps = 68/392 (17%)
Query: 253 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSH 312
+ ++ A+ +G+ + + G ++
Sbjct: 33 SITSSQHSLLEASYDGYIKRQRNELQHY---------SLYPNPQGYGNGNDFLGDFNHTN 83
Query: 313 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGY 372
+ + + LH A G+ + + V + +
Sbjct: 84 LQIPTEPE-------------PESPIKLHTEAA-GSYAITEPIT-RESVNIIDP--RHNR 126
Query: 373 NPLHLACFGGHVTVVGLLLSRAADLLQSA-------DKNGKTCLHIAATHGHLQMVEVLL 425
LH L+ A +A D + T L +A ++V L+
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM 186
Query: 426 GQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSR 485
GA+ +K ++H AA G++ +L +
Sbjct: 187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTK----------------------L 224
Query: 486 AADLLQSADKNGKTCLHIAATHGHLQMVEV---LLGQGAEINATDKVCDALLTHKAFINS 542
D+ + D+NG T L I A + V L+ +GA+++ A +S
Sbjct: 225 KGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA---------ARKDS 274
Query: 543 KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 602
+ GRTALH AA + ++LV + + D +TP+ LAA+ G+++V L+
Sbjct: 275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 334
Query: 603 LGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
GAS++A D +A NN + IF
Sbjct: 335 QGASVEAVDATDHTARQLAQANNHHNIVDIFD 366
Score = 237 bits (607), Expect = 4e-70
Identities = 65/401 (16%), Positives = 122/401 (30%), Gaps = 84/401 (20%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
L A+ G+ R NG++ + + ++ +
Sbjct: 39 HSLLEASYDGYIKRQRNE---------LQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE 89
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 345
+ LH A G + + + T LH A
Sbjct: 90 PEPESPIKLHTEAA-GSYAITEPITRE-----------SVN---IIDPRHNRTVLHWIAS 134
Query: 346 SGNENVVRLLLN-------SAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLL 398
+ + L+ +AG V+A + PL LA +V L+ AD
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMD-CDENTPLMLAVLARRRRLVAYLMKAGADP- 192
Query: 399 QSADKNGKTCLHIAATHGHLQMVEVLLGQ---GAEINATDKGGARSIHTAARYGHVGIIN 455
+K+ ++ LH AA + M+ +L +I D+ G ++ A
Sbjct: 193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG----- 247
Query: 456 TLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADL-------LQSADKNGKTCLHIAATHG 508
V LL+ + A + S G+T LH AA
Sbjct: 248 -----------------RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS 290
Query: 509 HLQMVEVLLGQ-GAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV 567
++ +V+ L+G+ G+ + D+ G+T + LAA G ++ +L+
Sbjct: 291 NMPIVKYLVGEKGSNKDKQDED-----------------GKTPIMLAAQEGRIEVVMYLI 333
Query: 568 HDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 608
A ++ + T LA + + +
Sbjct: 334 -QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 228 bits (583), Expect = 6e-67
Identities = 66/438 (15%), Positives = 126/438 (28%), Gaps = 97/438 (22%)
Query: 5 MSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEH 64
M E ++ ++ + LL A G+++ + +
Sbjct: 21 MENEEKNRKNHQSITSSQHSLLEASYDGYIKRQ---------RNELQHYSLYPNPQGYGN 71
Query: 65 GYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTP 124
G + D T+ LH A G + + + +ID +T
Sbjct: 72 GNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIID--PRHNRTV 128
Query: 125 LHLAAEAGQLQVCKLLL--------DLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 176
LH A + + L+ GA ++A D P+ +A + +
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM-K 187
Query: 177 HPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGH 236
+ T K + L AA
Sbjct: 188 AGADPTIYNKSER------------------------------------SALHQAAANRD 211
Query: 237 ANVVRVLV---KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTA 293
++ ++ K + ++ G TA+ + A N +
Sbjct: 212 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA------------------- 252
Query: 294 LHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 353
+ + L+ + + + G T LH AA N +V+
Sbjct: 253 -----------SAKLLVEK-----GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVK 296
Query: 354 LLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAA 413
L+ G D Q E+G P+ LA G + VV L+ + A +++ D T +A
Sbjct: 297 YLVGEKGSNKDKQD-EDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQ 354
Query: 414 THGHLQMVEVLLGQGAEI 431
+ H +V++ E
Sbjct: 355 ANNHHNIVDIFDRCRPER 372
Score = 224 bits (572), Expect = 3e-65
Identities = 82/451 (18%), Positives = 145/451 (32%), Gaps = 101/451 (22%)
Query: 22 WTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFIN 81
W P + + + + + + +L A+ GY+K N
Sbjct: 17 WMPPMENEEKNRKN--HQSITS----------SQHSLLEASYDGYIKR---------QRN 55
Query: 82 SKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 141
NG L F + + LH A G + + +
Sbjct: 56 ELQHYSLYPNPQGYGNGNDFLGDFNHT-NLQIPTEPEPESPIKLHTEAA-GSYAITEPIT 113
Query: 142 DLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSV 201
+I + +H A N+ E ++ + H A +
Sbjct: 114 RESVNIIDPRH-NRTVLHWIASNSSAEKSEDLI-----------------VHEAKECIAA 155
Query: 202 GV-IEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTA 260
G + + + TPL LA +V L+KAGA T NK+ +A
Sbjct: 156 GADVNAMDCDEN-------------TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA 202
Query: 261 VHLAAQNGHNQVLEEMRSSKAL--NVYSK-KLGVTALHVAAYFGQAD---TVRELLSHVP 314
+H AA N ++ M +S L ++ + G+TAL + A+ D + + L+
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK-- 260
Query: 315 GTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNP 374
+ + + G T LH AA N +V+ L+ G D Q
Sbjct: 261 ---GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ-------- 309
Query: 375 LHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINAT 434
D++GKT + +AA G +++V L+ QGA + A
Sbjct: 310 ---------------------------DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 342
Query: 435 DKGGARSIHTAARYGHVGIINTLLQKGEKVD 465
D + A H I++ + + +
Sbjct: 343 DATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 223 bits (570), Expect = 4e-65
Identities = 61/403 (15%), Positives = 127/403 (31%), Gaps = 76/403 (18%)
Query: 142 DLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSV 201
+ + Q + A+ + + + + L G+
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNEL----------QHYSLYPNPQGYGNGND 74
Query: 202 GVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAV 261
+ + + + + L A G + + + + + + T +
Sbjct: 75 FLGDFNHTNL--QIPTEPEPESP-IKLHTEAAG-SYAITEPITRESVNI-IDPRHNRTVL 129
Query: 262 HLAAQNGHNQVLEEMRSSKALNVYSK--------KLGVTALHVAAYFGQADTVRELLSHV 313
H A N + E++ +A + T L +A + V L+
Sbjct: 130 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA- 188
Query: 314 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN--SAGVQVDAQTQENG 371
GA + ++S + LH AA + + ++ +LN ++ NG
Sbjct: 189 ----------GADP--TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD-RNG 235
Query: 372 YNPLHLACFGGH---VTVVGLLLSRAADL-------LQSADKNGKTCLHIAATHGHLQMV 421
L + V LL+ + A + S G+T LH AA ++ +V
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295
Query: 422 EVLLGQ-GAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVG 480
+ L+G+ G+ + D+ G I AA+ G + ++ L+Q+G V+
Sbjct: 296 KYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV------------- 342
Query: 481 LLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEI 523
D T +A + H +V++ E
Sbjct: 343 -------------DATDHTARQLAQANNHHNIVDIFDRCRPER 372
Score = 190 bits (486), Expect = 1e-53
Identities = 54/317 (17%), Positives = 96/317 (30%), Gaps = 62/317 (19%)
Query: 331 LGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLL 390
S L A+Y G R L P G+ +
Sbjct: 32 QSITSSQHSLLEASYDGYIKRQRNELQ-----------HYSLYPNPQGYGNGNDFLGDFN 80
Query: 391 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
+ + LH A G + E + + I + +H A
Sbjct: 81 HTNLQI-PTEPEPESPIKLHTEA-AGSYAITEPITRESVNIID-PRHNRTVLHWIASNSS 137
Query: 451 VGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHL 510
L+ K ++ AD + + D + T L +A
Sbjct: 138 AEKSEDLIVHEAK-----------------ECIAAGAD-VNAMDCDENTPLMLAVLARRR 179
Query: 511 QMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDH 570
++V L+ GA+ +K R+ALH AA N + ++++
Sbjct: 180 RLVAYLMKAGADPTIYNK-----------------SERSALHQAAANRDFGMMVYMLNST 222
Query: 571 A--AVIDILTLRKQTPLHLAAEAG---QLQVCKLLLDLGASI--------DATDDQGQKP 617
I+ L T L + A Q+ KLL++ GA + D+ +G+
Sbjct: 223 KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282
Query: 618 IHVAAQNNFPEVAQIFL 634
+H AAQ + + + +
Sbjct: 283 LHYAAQVSNMPIVKYLV 299
Score = 135 bits (341), Expect = 2e-34
Identities = 40/286 (13%), Positives = 77/286 (26%), Gaps = 65/286 (22%)
Query: 401 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQK 460
+ + + L A+ G+++ N G+ + +
Sbjct: 33 SITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDFLGDFNHTN 83
Query: 461 GEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 520
+ + LH A G + E + +
Sbjct: 84 LQIPT--------------------------EPEPESPIKLHTEA-AGSYAITEPITRES 116
Query: 521 AEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHA-------AV 573
I RT LH A N A+ L+ A A
Sbjct: 117 VNIIDPRH------------------NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158
Query: 574 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
++ + + TPL LA A + ++ L+ GA + + +H AA N +
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 218
Query: 634 LRAHPSLVTATTKEKERAKDLIAA---GKHCEGMATELLALAAGAD 676
L + ++ L+ + + +LL + GA
Sbjct: 219 LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL-VEKGAK 263
Score = 63.4 bits (155), Expect = 1e-10
Identities = 10/113 (8%), Positives = 28/113 (24%), Gaps = 19/113 (16%)
Query: 522 EINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRK 581
+ +K + + +L A+ +GY R + ++
Sbjct: 20 PMENEEK--------NRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYS---------- 61
Query: 582 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
P G + + + +H A ++ + +
Sbjct: 62 LYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPIT 113
Score = 36.1 bits (84), Expect = 0.047
Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 22/133 (16%)
Query: 582 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 641
Q L A+ G + + P N + F + +
Sbjct: 38 QHSLLEASYDG---------YIKRQRNELQHYSLYPNPQGYGNGNDFLGD-FNHTNLQIP 87
Query: 642 TATTKEKERAKDL-IAAGKHCEGMATELLALAAGADSA----GR--ILTATDRRNIEFLD 694
T E L A TE + + R + + E +
Sbjct: 88 TEPEPESPIK--LHTEAAGSYA--ITEPI-TRESVNIIDPRHNRTVLHWIASNSSAEKSE 142
Query: 695 VLIENEQKEVIAH 707
LI +E KE IA
Sbjct: 143 DLIVHEAKECIAA 155
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 237 bits (608), Expect = 9e-72
Identities = 59/316 (18%), Positives = 108/316 (34%), Gaps = 64/316 (20%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
+ +H AA G ++R L+S G + + + ++PLH A G+
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQ-----------GWAV--NIITADHVSPLHEACLGGHL 49
Query: 350 NVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
+ V++LL G QV+ T + + PL AC G V LLL A + + + + +
Sbjct: 50 SCVKILL-KHGAQVNGVT-ADWHTPLFNACVSGSWDCVNLLLQHGASV--QPESDLASPI 105
Query: 410 HIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTN 469
H AA GH++ V L+ G I+ ++ A + LL+ G V+
Sbjct: 106 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---- 161
Query: 470 NLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKV 529
K + LH A ++ +L+ GA+ A +
Sbjct: 162 -----------------------QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNA- 197
Query: 530 CDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAA 589
G+ + L L + + + ++ L +
Sbjct: 198 ----------------EGKRPVELVPPES--PLAQLFL-EREGPPSLMQLCRLRIRKCFG 238
Query: 590 EAGQLQVCKLLLDLGA 605
++ KL+L
Sbjct: 239 IQQHHKITKLVLPEDL 254
Score = 220 bits (564), Expect = 1e-65
Identities = 61/302 (20%), Positives = 101/302 (33%), Gaps = 48/302 (15%)
Query: 222 VTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 281
+++ +P+ AA GH +R L+ G + + +H A GH ++ + A
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 282 LNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 340
V T L A G D V LL H GAS E +P+
Sbjct: 61 -QVNGVTADWHTPLFNACVSGSWDCVNLLLQH-----------GASVQPE---SDLASPI 105
Query: 341 HLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQS 400
H AA G+ V L+ + G +D + + PL+LAC V LL AD+ +
Sbjct: 106 HEAARRGHVECVNSLI-AYGGNIDHKI-SHLGTPLYLACENQQRACVKKLLESGADV--N 161
Query: 401 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQK 460
K + LH A ++ +L+ GA+ A + G R +
Sbjct: 162 QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESP---------- 211
Query: 461 GEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 520
+ L L R H ++ +++L +
Sbjct: 212 -----------------LAQLFLEREGP-PSLMQLCRLRIRKCFGIQQHHKITKLVLPED 253
Query: 521 AE 522
+
Sbjct: 254 LK 255
Score = 200 bits (512), Expect = 2e-58
Identities = 63/274 (22%), Positives = 109/274 (39%), Gaps = 34/274 (12%)
Query: 404 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEK 463
+ + +H AA HGH + L+ QG +N +H A GH+ + LL+ G +
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 464 VDVTTNN------LAC--GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEV 515
V+ T + AC G V LLL A + + + + +H AA GH++ V
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV--QPESDLASPIHEAARRGHVECVNS 119
Query: 516 LLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVID 575
L+ G I+ T L+LA N + L+ + A ++
Sbjct: 120 LIAYGGNIDHKIS-----------------HLGTPLYLACENQQRACVKKLL-ESGADVN 161
Query: 576 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 635
+ +PLH A ++ LL+D GA A + +G++P+ + + +AQ+FL
Sbjct: 162 Q-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFL- 217
Query: 636 AHPSLVTATTKEKERAKDLIAAGKHCEGMATELL 669
+ + R G T+L+
Sbjct: 218 EREGPPSLMQLCRLRI--RKCFGIQQHHKITKLV 249
Score = 197 bits (503), Expect = 3e-57
Identities = 50/254 (19%), Positives = 95/254 (37%), Gaps = 9/254 (3%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
W+P+ A GH + +++ V++ + S LH A G+L LL H A +
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
N + T L A ++G D L+ H A + +P+H AA G ++ L
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLL-QHGASVQP-ESDLASPIHEAARRGHVECVNSL 120
Query: 141 LDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS 200
+ G +ID P+++A +N + L + + K ++ H A S
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV--NQGKGQDSPLHAVARTAS 178
Query: 201 VGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTA 260
+ LM F A+N P++L + ++ ++ +
Sbjct: 179 EELACLLMDFGAD--TQAKNA-EGKRPVELVPPESP--LAQLFLEREGPPSLMQLCRLRI 233
Query: 261 VHLAAQNGHNQVLE 274
H+++ +
Sbjct: 234 RKCFGIQQHHKITK 247
Score = 114 bits (288), Expect = 2e-28
Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 4/132 (3%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
++ + S TPL +AC V +L + A V+ + S LH A ++ L
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLL 185
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
+ A +K+ G+ + L L + + + ++ L +
Sbjct: 186 MDFGADTQAKNAEGKRPVELVPPES--PLAQLFL-EREGPPSLMQLCRLRIRKCFGIQQH 242
Query: 134 LQVCKLLLDLGA 145
++ KL+L
Sbjct: 243 HKITKLVLPEDL 254
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 234 bits (600), Expect = 2e-70
Identities = 62/301 (20%), Positives = 93/301 (30%), Gaps = 35/301 (11%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAG---VQVDAQTQENGYNPLHLACFGGHVTVVGLL 390
E G T LHLA +E + LL +D Q + G LHLA G + V L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLL-GFSAGHEYLDLQN-DLGQTALHLAAILGEASTVEKL 64
Query: 391 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGH 450
+ A + A++ G T LH+A VLL +
Sbjct: 65 YAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT-YLTQSQDCTPD 122
Query: 451 VGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHL 510
+ L ++ + +G T LH+A H
Sbjct: 123 TSHAPAAVDSQPN----------PENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDA 171
Query: 511 QMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDH 570
+MV +L GA++N + GRT LHLA A + L+
Sbjct: 172 EMVRLLRDAGADLNKPEP----------------TCGRTPLHLAVEAQAASVLELLL-KA 214
Query: 571 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 630
A +TPL A + +LL GA P + ++ +
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274
Query: 631 Q 631
Sbjct: 275 D 275
Score = 218 bits (557), Expect = 2e-64
Identities = 65/304 (21%), Positives = 107/304 (35%), Gaps = 34/304 (11%)
Query: 220 NRVTE--ATPLQLAAEGGHANVVRVLVKAGASCTD---ENKTGFTAVHLAAQNGHNQVLE 274
VTE T L LA H + L+ A +N G TA+HLAA G +E
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 275 EMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGS 333
++ ++ A V + G TALH+A LL P + T + +
Sbjct: 63 KLYAAGA-GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
++ P + + EN +Q++A+ +G+ PLH+A +V LL
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN-YDGHTPLHVAVIHKDAEMVRLLRDA 180
Query: 394 AADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGI 453
ADL + G+T LH+A ++E+LL GA+ A GG + +A + +
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240
Query: 454 INTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMV 513
L G A + + + +
Sbjct: 241 ARLLRAHG-------------------------AP-EPEDGGDKLSPCSSSGSDSDSDNR 274
Query: 514 EVLL 517
+
Sbjct: 275 DEGD 278
Score = 209 bits (534), Expect = 3e-61
Identities = 66/327 (20%), Positives = 97/327 (29%), Gaps = 70/327 (21%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLG-ELGSESGMTPLHLAAYSGN 348
G TALH+A + LL A +L ++ G T LHLAA G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGF-----------SAGHEYLDLQNDLGQTALHLAAILGE 57
Query: 349 ENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAAD---------LLQ 399
+ V L +AG V G+ LHLAC T +LL L Q
Sbjct: 58 ASTVEKLY-AAGAGVLVAE-RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115
Query: 400 SADKNGKTC----LHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIIN 455
S D T + + + ++ A + G +H A + ++
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175
Query: 456 TLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEV 515
L G ++ G+T LH+A ++E+
Sbjct: 176 LLRDAGADLNKPEPT-------------------------CGRTPLHLAVEAQAASVLEL 210
Query: 516 LLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVID 575
LL GA+ A GRT L A + L R L H A
Sbjct: 211 LLKAGADPTARMY-----------------GGRTPLGSALLRPNPILARLLR-AHGAPEP 252
Query: 576 ILTLRKQTPLHLAAEAGQLQVCKLLLD 602
K +P + +
Sbjct: 253 EDGGDKLSPCSSSGSDSDSDNRDEGDE 279
Score = 207 bits (528), Expect = 2e-60
Identities = 60/295 (20%), Positives = 100/295 (33%), Gaps = 31/295 (10%)
Query: 183 ATTKDGNTCAHIAAMQGSVGVIEELMKFD-RSGVISARNRVTEATPLQLAAEGGHANVVR 241
T+DG+T H+A + ++ L+ F + +N T L LAA G A+ V
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAILGEASTVE 62
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE--------------EMRSSKALNVYSK 287
L AGA + G TA+HLA + + + +++ +
Sbjct: 63 KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
Query: 288 KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 347
A + + + E + G TPLH+A
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDW-----------RLQL--EAENYDGHTPLHVAVIHK 169
Query: 348 NENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKT 407
+ +VRLL AG ++ G PLHLA +V+ LLL AD + G+T
Sbjct: 170 DAEMVRLLR-DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRT 227
Query: 408 CLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGE 462
L A + + +L GA ++ + + +
Sbjct: 228 PLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYDD 282
Score = 198 bits (506), Expect = 2e-57
Identities = 63/270 (23%), Positives = 99/270 (36%), Gaps = 35/270 (12%)
Query: 369 ENGYNPLHLACFGGHVTVVGLLLSRAADLLQ--SADKNGKTCLHIAATHGHLQMVEVLLG 426
E+G LHLA H + LL +A + G+T LH+AA G VE L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 427 QGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRA 486
GA + ++GG ++H A R LLQ ++ L+++
Sbjct: 67 AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT----------YLTQS 116
Query: 487 ADLLQSADKNGKTCLHIAATH-GHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSR 545
D + + + ++ A +
Sbjct: 117 QDC---TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD---------------- 157
Query: 546 VGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRK-QTPLHLAAEAGQLQVCKLLLDLG 604
G T LH+A ++ A++ R L D A ++ +TPLHLA EA V +LLL G
Sbjct: 158 -GHTPLHVAVIHKDAEMVRLLR-DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Query: 605 ASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
A A G+ P+ A P +A++
Sbjct: 216 ADPTARMYGGRTPLGSALLRPNPILARLLR 245
Score = 185 bits (472), Expect = 9e-53
Identities = 60/279 (21%), Positives = 102/279 (36%), Gaps = 21/279 (7%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLN---NHARVDVFDQEGRSALHLAAEHGYLKVC 70
T G T L +A H ++ +L H +D+ + G++ALHLAA G
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 71 DALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV------------IDILT 118
+ L A + R G TALHLA L+ + D
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 119 LRKQTPLHLAAEA-GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 177
P + ++ + + D ++A + G P+HVA + E+ ++ A
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181
Query: 178 PSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGH 236
L G T H+A + V+E L+K +G +AR TPL A +
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLK---AGADPTARMY-GGRTPLGSALLRPN 237
Query: 237 ANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEE 275
+ R+L GA ++ + + + + +E
Sbjct: 238 PILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDE 276
Score = 148 bits (377), Expect = 4e-40
Identities = 44/212 (20%), Positives = 74/212 (34%), Gaps = 17/212 (8%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRS--------------ALHL 60
G T L +AC +L + A
Sbjct: 72 LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 120
+ + + + + +++ G T LH+A ++ A++ R L D A ++
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR-DAGADLNKPEPT 190
Query: 121 K-QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 179
+TPLHLA EA V +LLL GA A G+ P+ A P +A+ LRAH +
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR-LLRAHGA 249
Query: 180 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
D + + +E ++D
Sbjct: 250 PEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 125 bits (317), Expect = 5e-32
Identities = 48/259 (18%), Positives = 79/259 (30%), Gaps = 56/259 (21%)
Query: 431 INATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLL 490
+ G ++H A + H ++ LL +
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFS--AGHEYLD-------------------- 39
Query: 491 QSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTA 550
+ G+T LH+AA G VE L GA + ++ G TA
Sbjct: 40 -LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER-----------------GGHTA 81
Query: 551 LHLAAMNGYADLCRFLVHDHAAV------------IDILTLRKQTPLHLAAEA-GQLQVC 597
LHLA L+ + D P + ++ + +
Sbjct: 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141
Query: 598 KLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIAA 657
D ++A + G P+HVA + E+ + LR + + R +A
Sbjct: 142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKPEPTCGRTPLHLAV 200
Query: 658 GKHCEGMATELLALAAGAD 676
+ ELL L AGAD
Sbjct: 201 EAQAASVL-ELL-LKAGAD 217
Score = 31.0 bits (71), Expect = 2.0
Identities = 1/29 (3%), Positives = 7/29 (24%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLN 42
+ +P + + + +
Sbjct: 251 EPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 230 bits (588), Expect = 1e-68
Identities = 68/386 (17%), Positives = 116/386 (30%), Gaps = 108/386 (27%)
Query: 230 LAAEGGHANVVRVLVKAGAS--CTDENKT---GFTAVHLAAQNGHNQVLEEMRSSKALNV 284
+ + H + LV G+ D + G G + S L
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLL------SNPLMG 54
Query: 285 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 344
+ + +H AA G ++R L+S G + + + ++PLH A
Sbjct: 55 DAVS-DWSPMHEAAIHGHQLSLRNLISQ-----------GWAV--NIITADHVSPLHEAC 100
Query: 345 YSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKN 404
G+ + V++LL G QV+ T + + PL AC G V LLL A + + +
Sbjct: 101 LGGHLSCVKILL-KHGAQVNGVT-ADWHTPLFNACVSGSWDCVNLLLQHGASV--QPESD 156
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKV 464
+ +H AA GH++ V L+ G I+ ++ A + LL+ G V
Sbjct: 157 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 216
Query: 465 DVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+ K + LH ++ +L+ GA+
Sbjct: 217 N---------------------------QGKGQDSPLHAVVRTASEELACLLMDFGADTQ 249
Query: 525 ATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTP 584
A + G+ + L
Sbjct: 250 AKNAE-----------------GKRPVELVPPES-------------------------- 266
Query: 585 LHLAAEAGQLQVCKLLLDLGASIDAT 610
LA L GAS+
Sbjct: 267 -PLAQL--------FLEREGASLPKP 283
Score = 214 bits (548), Expect = 5e-63
Identities = 67/339 (19%), Positives = 109/339 (32%), Gaps = 64/339 (18%)
Query: 342 LAAYSGNENVVRLLLNSAGVQVDA----QTQENGYNPLHLACFGGHVTVVGLLLSRAADL 397
+ + + + L+ G + + Q +G P F G LLS
Sbjct: 1 MGSSHHHHHHSSGLV-PRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLM- 53
Query: 398 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTL 457
+ + +H AA HGH + L+ QG +N +H A GH+ + L
Sbjct: 54 --GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111
Query: 458 LQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 517
L+ G +V+ + T L A G V +LL
Sbjct: 112 LKHGAQVNG--------------------------VTADWHTPLFNACVSGSWDCVNLLL 145
Query: 518 GQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDIL 577
GA + + +H AA G+ + L+ + ID
Sbjct: 146 QHGASVQPESD------------------LASPIHEAARRGHVECVNSLI-AYGGNIDHK 186
Query: 578 TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 637
TPL+LA E Q K LL+ GA ++ P+H + E+A + +
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLLESGADVNQGKG-QDSPLHAVVRTASEELACLLM-DF 244
Query: 638 PSLVTATTKEKERAKDLIAAGKHCEGMATELLALAAGAD 676
+ A E +R + +A L GA
Sbjct: 245 GADTQAKNAEGKRP--VELVPPESP-LAQLFL-EREGAS 279
Score = 207 bits (529), Expect = 2e-60
Identities = 59/308 (19%), Positives = 112/308 (36%), Gaps = 25/308 (8%)
Query: 127 LAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTK 186
+ + L+ G+ + + D Q + + + I L ++P +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDG-KQGGMDGSKPAGPRDFPGIRLLSNP--LMGDAV 57
Query: 187 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 246
+ H AA+ G + L+ + ++ +PL A GGH + V++L+K
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLI--SQGWAVNIITA-DHVSPLHEACLGGHLSCVKILLKH 114
Query: 247 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV 306
GA T + A +G + + A +V + + +H AA G + V
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA-SVQPESDLASPIHEAARRGHVECV 173
Query: 307 RELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 366
L+++ G + + TPL+LA + V+ LL +G V+
Sbjct: 174 NSLIAY-----------GGNI--DHKISHLGTPLYLACENQQRACVKKLL-ESGADVNQG 219
Query: 367 TQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLG 426
+ +PLH + LL+ AD Q+ + GK + + L L
Sbjct: 220 --KGQDSPLHAVVRTASEELACLLMDFGADT-QAKNAEGKRPVELVPPESPL-AQLFLER 275
Query: 427 QGAEINAT 434
+GA +
Sbjct: 276 EGASLPKP 283
Score = 195 bits (498), Expect = 3e-56
Identities = 56/307 (18%), Positives = 107/307 (34%), Gaps = 26/307 (8%)
Query: 60 LAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTL 119
+ + H + L+ + + S + + + G D + + + D +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMD-GKQGGMDGSKPAGPRDFPGIRLLSNPLMGD--AV 57
Query: 120 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 179
+P+H AA G + L+ G +++ P+H A +I L H +
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL-KHGA 116
Query: 180 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHAN 238
V T D +T A + GS + L++ G + + A+P+ AA GH
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQ---HGASVQPESD--LASPIHEAARRGHVE 171
Query: 239 VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAA 298
V L+ G + + T ++LA +N ++++ S A +V K + LH
Sbjct: 172 CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA-DVNQGKGQDSPLHAVV 230
Query: 299 YFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS 358
+ L+ GA + + G P+ L +L L
Sbjct: 231 RTASEELACLLMDF-----------GADT--QAKNAEGKRPVELVPPESPL--AQLFLER 275
Query: 359 AGVQVDA 365
G +
Sbjct: 276 EGASLPK 282
Score = 185 bits (472), Expect = 9e-53
Identities = 55/270 (20%), Positives = 95/270 (35%), Gaps = 27/270 (10%)
Query: 7 GTEISKALNKQTSI-GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 65
G+ ++ KQ + G P G L N ++ + S +H AA HG
Sbjct: 18 GSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-------AVSDWSPMHEAAIHG 70
Query: 66 YLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPL 125
+ L++ +N + + LH A + G+ + L+ H A ++ +T TPL
Sbjct: 71 HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPL 129
Query: 126 HLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATT 185
A +G LLL GAS+ D PIH AA+ E + A+ +
Sbjct: 130 FNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLI-AYGGNIDHKI 187
Query: 186 KDGNTCAHIAAMQGSVGVIEELMKF------DRSGVISARNRVTEATPLQLAAEGGHANV 239
T ++A +++L++ + +PL +
Sbjct: 188 SHLGTPLYLACENQQRACVKKLLESGADVNQGKGQ----------DSPLHAVVRTASEEL 237
Query: 240 VRVLVKAGASCTDENKTGFTAVHLAAQNGH 269
+L+ GA +N G V L
Sbjct: 238 ACLLMDFGADTQAKNAEGKRPVELVPPESP 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 229 bits (586), Expect = 2e-68
Identities = 78/299 (26%), Positives = 122/299 (40%), Gaps = 43/299 (14%)
Query: 336 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA 395
L A + + ++V+ LL G V+ Q +E G+ PLH A +V LLL A
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 396 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIIN 455
D KNG T +AA G ++++++ L +GA++N D G + AA YG V +
Sbjct: 64 DP-VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122
Query: 456 TLLQKGEKVDVTTNNLA------------------CGHVTVVGLLLSRA-ADLLQSADKN 496
L ++G V++ GHV V+ +LL AD+ + D
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNM 181
Query: 497 GKTCLHIAATHGH----LQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALH 552
G+ L A + +LL GA++N + G+T L
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER-----------------GKTPLI 224
Query: 553 LAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 611
LA + L + L+ I+ +T L LA E ++ +LL GAS D D
Sbjct: 225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 208 bits (531), Expect = 9e-61
Identities = 70/321 (21%), Positives = 120/321 (37%), Gaps = 59/321 (18%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 284
L A + ++V+ L++ GA+ + + G+T +H A Q ++E + A +
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-DP 65
Query: 285 YSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA 343
+ K G T +AA G ++ LS GA G T A
Sbjct: 66 VLRKKNGATPFLLAAIAGSVKLLKLFLSK-----------GADV--NECDFYGFTAFMEA 112
Query: 344 AYSGNENVVRLLLNSAGVQVDAQ---------TQENGYNPLHLACFGGHVTVVGLLLSRA 394
A G ++ L G V+ + ++ G L A GHV V+ +LL
Sbjct: 113 AVYGKVKALKFLY-KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171
Query: 395 -ADLLQSADKNGKTCLHIAATHGH----LQMVEVLLGQGAEINATDKGGARSIHTAARYG 449
AD+ + D G+ L A + +LL GA++N + G + A
Sbjct: 172 GADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230
Query: 450 HVGIINTLL-QKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHG 508
H+G++ LL Q+ +++ D +GKT L +A
Sbjct: 231 HLGLVQRLLEQEHIEIN--------------------------DTDSDGKTALLLAVELK 264
Query: 509 HLQMVEVLLGQGAEINATDKV 529
++ E+L +GA + D V
Sbjct: 265 LKKIAELLCKRGASTDCGDLV 285
Score = 207 bits (529), Expect = 2e-60
Identities = 73/312 (23%), Positives = 119/312 (38%), Gaps = 42/312 (13%)
Query: 370 NGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 429
+ L A V +V LL A++ ++ G T LH A +VE+LL GA
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 430 EINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADL 489
+ K GA AA G V ++ L KG V+
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE----------------------- 100
Query: 490 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRT 549
D G T AA +G ++ ++ L +GA +N K K + G T
Sbjct: 101 ---CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK-------TKEDQERLRKGGAT 150
Query: 550 ALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ----LQVCKLLLDLGA 605
AL AA G+ ++ + L+ + A ++ + L A + + LLLD GA
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210
Query: 606 SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL-IAAGKHCEGM 664
++ ++G+ P+ +A + + Q L + T + + A L +A + +
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA--LLLAVELKLKKI 268
Query: 665 ATELLALAAGAD 676
A ELL GA
Sbjct: 269 A-ELL-CKRGAS 278
Score = 198 bits (506), Expect = 3e-57
Identities = 77/387 (19%), Positives = 122/387 (31%), Gaps = 107/387 (27%)
Query: 51 DQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSR-VGRTALHLAAMNGYADLCRFLVHD 109
E L A ++ + + LL A +N + G T LH A D+ L+
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL-R 60
Query: 110 HAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEV 169
H A + TP LAA AG +++ KL L GA ++ D G AA +
Sbjct: 61 HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120
Query: 170 AQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQ 229
+ G + ++ R R AT L
Sbjct: 121 LKFLY-------------------------KRGA--NVNLRRKTKEDQERLRKGGATALM 153
Query: 230 LAAEGGHANVVRVLV-KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKK 288
AAE GH V+++L+ + GA + G A+ A + + +E +
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI------------ 201
Query: 289 LGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN 348
LL H GA + E G TPL LA +
Sbjct: 202 -----------------THLLLDH-----------GADV--NVRGERGKTPLILAVEKKH 231
Query: 349 ENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTC 408
+V+ LL ++++ D +GKT
Sbjct: 232 LGLVQRLLEQEHIEINDT-----------------------------------DSDGKTA 256
Query: 409 LHIAATHGHLQMVEVLLGQGAEINATD 435
L +A ++ E+L +GA + D
Sbjct: 257 LLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 186 bits (474), Expect = 4e-53
Identities = 58/304 (19%), Positives = 102/304 (33%), Gaps = 45/304 (14%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQE-GRSALHLAAEHGYLKVCDALLTHKAF 79
L+ A ++LV +L A V+ ++E G + LH A + + + LL H A
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 139
+ + G T LAA+ G L + + A ++ T AA G+++ K
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLFL-SKGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 140 LLDLGASIDATD----------DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGN 189
L GA+++ G + AA+ EV +I L + V A G
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183
Query: 190 TCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGAS 249
A + +E + +L+ GA
Sbjct: 184 NALIHALLSSDDSDVEA--------------------------------ITHLLLDHGAD 211
Query: 250 CTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRE 308
+ G T + LA + H +++ + + + + G TAL +A
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271
Query: 309 LLSH 312
L
Sbjct: 272 LCKR 275
Score = 159 bits (406), Expect = 7e-44
Identities = 63/244 (25%), Positives = 107/244 (43%), Gaps = 21/244 (8%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
GWTPL A ++V +L + A + + G + LAA G +K+ L+ A +
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDI----------LTLRKQTPLHLAAE 130
N G TA AA+ G +FL A +++ L T L AAE
Sbjct: 99 NECDFYGFTAFMEAAVYGKVKALKFLY-KRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 131 AGQLQVCKLLLD-LGASIDATDDQGQKPIHVAAQNN----FPEVAQIFLRAHPSLVTATT 185
G ++V K+LLD +GA ++A D+ G+ + A ++ + L H + V
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH-LLLDHGADVNVRG 216
Query: 186 KDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLV 244
+ G T +A + +G+++ L+ ++ + I+ + T L LA E + +L
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLL--EQEHIEINDTDS-DGKTALLLAVELKLKKIAELLC 273
Query: 245 KAGA 248
K GA
Sbjct: 274 KRGA 277
Score = 150 bits (381), Expect = 2e-40
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 14/207 (6%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ G TP L+A G ++L+ L+ A V+ D G +A AA +G +K L
Sbjct: 66 VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125
Query: 75 THKAFINSK----------SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTP 124
A +N + + G TAL AA G+ ++ + L+ + A ++ +
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185
Query: 125 LHLAAEAGQ----LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
L A + + LLLD GA ++ ++G+ P+ +A + + Q L
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEEL 207
+ T DG T +A + E L
Sbjct: 246 INDTDSDGKTALLLAVELKLKKIAELL 272
Score = 116 bits (292), Expect = 1e-28
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVCDA- 72
+ G T L+ A +GH+E++ +L+ A V+ D GR+AL A +A
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201
Query: 73 ---LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAA 129
LL H A +N + G+T L LA + L + L+ I+ +T L LA
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261
Query: 130 EAGQLQVCKLLLDLGASIDATD 151
E ++ +LL GAS D D
Sbjct: 262 ELKLKKIAELLCKRGASTDCGD 283
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 229 bits (586), Expect = 4e-68
Identities = 63/328 (19%), Positives = 113/328 (34%), Gaps = 38/328 (11%)
Query: 288 KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 347
+ + G + + ++ + G A SG
Sbjct: 6 AKQKRNEQLKRWIGSETDLEPPVVK-----------RKKT--KVKFDDG-AVFLAACSSG 51
Query: 348 NENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKT 407
+ V LL G ++ +G LH AC +V +V L+ A++ D G
Sbjct: 52 DTEEVLRLL-ERGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWI 108
Query: 408 CLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVT 467
LH AA+ G+L + E L+ QGA + A + G + A ++ + +
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168
Query: 468 TNNLA--CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINA 525
L S + K+G T LH+AA G+ +++++L+ ++N
Sbjct: 169 ARKEEERIMLRDARQWLNSGHIND-VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI 227
Query: 526 TDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPL 585
D G T LH AA G + CR LV ++ ++ + QT
Sbjct: 228 KDYD-----------------GWTPLHAAAHWGKEEACRILV-ENLCDMEAVNKVGQTAF 269
Query: 586 HLAAEAGQLQVCKLLLDLGASIDATDDQ 613
+A E + +L ++
Sbjct: 270 DVADEDILGYLEELQKKQNLLHSEKREK 297
Score = 208 bits (533), Expect = 7e-61
Identities = 58/358 (16%), Positives = 115/358 (32%), Gaps = 61/358 (17%)
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 139
+ + L G V + A +G +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPV-VKRKKTKVKF-DDGAVFLAACSSGDTEEVLR 58
Query: 140 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 199
LL+ GA I+ + G +H A ++ ++ + + + + + +G
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGW---------- 107
Query: 200 SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFT 259
PL AA G+ ++ L+ GA N G T
Sbjct: 108 --------------------------IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT 141
Query: 260 AVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKS 319
+ +A + ++L+ + + ++ A D + L S
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGVD------IEAARKEEERIMLRDARQWLNSG------- 188
Query: 320 DPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLAC 379
+ ++SG T LH+AA G V++LL+ A V+ + +G+ PLH A
Sbjct: 189 ----HIND--VRHAKSGGTALHVAAAKGYTEVLKLLI-QARYDVNIKD-YDGWTPLHAAA 240
Query: 380 FGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
G +L+ D +++ +K G+T +A + E+ Q + +
Sbjct: 241 HWGKEEACRILVENLCD-MEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297
Score = 208 bits (531), Expect = 2e-60
Identities = 64/348 (18%), Positives = 114/348 (32%), Gaps = 62/348 (17%)
Query: 186 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA----TPLQLAAEGGHANVVR 241
+ GS +E + R + A G V
Sbjct: 6 AKQKRNEQLKRWIGSETDLEPP--------VVKRKKTKVKFDDGAVFLAACSSGDTEEVL 57
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 300
L++ GA N G TA+H A + + +++ + + A N+ G LH AA
Sbjct: 58 RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA-NINQPDNEGWIPLHAAASC 116
Query: 301 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 360
G D L+S GA + G TPL +A E +++ +N G
Sbjct: 117 GYLDIAEYLISQ-----------GAHV--GAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 361 VQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQM 420
V ++A L S + K+G T LH+AA G+ ++
Sbjct: 164 VDIEA--------ARKEEERIMLRDARQWLNSGHIND-VRHAKSGGTALHVAAAKGYTEV 214
Query: 421 VEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVG 480
+++L+ ++N D G +H AA +G L++ ++
Sbjct: 215 LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME--------------- 259
Query: 481 LLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDK 528
+ +K G+T +A + E+ Q + +
Sbjct: 260 -----------AVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKRE 296
Score = 193 bits (494), Expect = 2e-55
Identities = 60/308 (19%), Positives = 118/308 (38%), Gaps = 27/308 (8%)
Query: 51 DQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDH 110
D + + L G + + + K A +G + L+ +
Sbjct: 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD-DGAVFLAACSSGDTEEVLRLL-ER 62
Query: 111 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 170
A I+ + T LH A + + K L++ GA+I+ D++G P+H AA + ++A
Sbjct: 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIA 122
Query: 171 QIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQL 230
+ + + + V A +G+T IA + +++ + R V +
Sbjct: 123 EYLI-SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV---------NRQGVDIEAARKE 172
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KL 289
+ + L + K+G TA+H+AA G+ +VL+ + ++ +V K
Sbjct: 173 EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY-DVNIKDYD 231
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
G T LH AA++G+ + R L+ + E ++ G T +A
Sbjct: 232 GWTPLHAAAHWGKEEACRILVEN-----------LCDM--EAVNKVGQTAFDVADEDILG 278
Query: 350 NVVRLLLN 357
+ L
Sbjct: 279 YLEELQKK 286
Score = 191 bits (488), Expect = 9e-55
Identities = 61/293 (20%), Positives = 106/293 (36%), Gaps = 14/293 (4%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
+ G + + + V +G A G + LL A I
Sbjct: 8 QKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERGADI 66
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
N + G TALH A ++ D+ +FLV ++ A I+ PLH AA G L + + L
Sbjct: 67 NYANVDGLTALHQACIDDNVDMVKFLV-ENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125
Query: 141 LDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS 200
+ GA + A + +G P+ +A + E+ Q V D
Sbjct: 126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN-------EVNRQGVDIEAARKEEERIML 178
Query: 201 VGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTA 260
+ L + + T L +AA G+ V+++L++A ++ G+T
Sbjct: 179 RDARQWLN--SGHINDVRHAK-SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTP 235
Query: 261 VHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 312
+H AA G + + + ++ + K+G TA VA
Sbjct: 236 LHAAAHWGKEEACRILVENLC-DMEAVNKVGQTAFDVADEDILGYLEELQKKQ 287
Score = 172 bits (439), Expect = 4e-48
Identities = 70/274 (25%), Positives = 110/274 (40%), Gaps = 24/274 (8%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
L AC+ G E V +L A ++ + +G +ALH A + + L+ + A I
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
N G LH AA GY D+ +L+ A + + TPL +A E ++ +
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLI-SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158
Query: 141 LDL-GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 199
++ G I+A + + Q +L + K G T H+AA +G
Sbjct: 159 VNRQGVDIEAAR-------KEEERIMLRDARQ-WLNSGHINDVRHAKSGGTALHVAAAKG 210
Query: 200 SVGVIEELMKFDRSGVISARNRVTEA-----TPLQLAAEGGHANVVRVLVKAGASCTDEN 254
V++ L I AR V TPL AA G R+LV+ N
Sbjct: 211 YTEVLKLL--------IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262
Query: 255 KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKK 288
K G TA +A ++ LEE++ + L K+
Sbjct: 263 KVGQTAFDVADEDILGY-LEELQKKQNLLHSEKR 295
Score = 139 bits (353), Expect = 1e-36
Identities = 43/237 (18%), Positives = 71/237 (29%), Gaps = 78/237 (32%)
Query: 401 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQK 460
AD K + G +E + + + GA A G + LL++
Sbjct: 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLER 62
Query: 461 GEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 520
G ++ A+ +G T LH A ++ MV+ L+ G
Sbjct: 63 GADIN--------------------------YANVDGLTALHQACIDDNVDMVKFLVENG 96
Query: 521 AEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 580
A IN D G+
Sbjct: 97 ANINQPDN----------------------------EGW--------------------- 107
Query: 581 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 637
PLH AA G L + + L+ GA + A + +G P+ +A + E+ Q +
Sbjct: 108 --IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162
Score = 128 bits (325), Expect = 5e-33
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 7/159 (4%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+ S G TPL IA EL+ +N + +A L
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ------GVDIEAARKEEERIMLRDARQWL 185
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
+ ++ G TALH+AA GY ++ + L+ ++I TPLH AA G+
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI-QARYDVNIKDYDGWTPLHAAAHWGK 244
Query: 134 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQI 172
+ C++L++ ++A + GQ VA ++ + ++
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEEL 283
Score = 107 bits (270), Expect = 9e-26
Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 1/140 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N+Q + + + H + G +ALH+AA GY +V L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
+ + +N K G T LH AA G + CR LV ++ ++ + QT +A E
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV-ENLCDMEAVNKVGQTAFDVADEDIL 277
Query: 134 LQVCKLLLDLGASIDATDDQ 153
+ +L ++
Sbjct: 278 GYLEELQKKQNLLHSEKREK 297
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 225 bits (575), Expect = 8e-67
Identities = 46/300 (15%), Positives = 100/300 (33%), Gaps = 45/300 (15%)
Query: 336 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA 395
GM + + ++ L+S +G++ + A +V +V LL+ A
Sbjct: 1 GMDLSRIN--TWKSKQLKSFLSSK--DTFKAD-VHGHSASYYAIADNNVRLVCTLLNAGA 55
Query: 396 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIIN 455
+ LH AAT ++V++LL G + + D G +++ A G++ +
Sbjct: 56 LK---NLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVK 112
Query: 456 TLLQKGEKVDVTTNN-------LAC--GHVTVVGLLLSRAADLLQSADKNGKTCLHIAAT 506
++K ++ A V++V LS +C+HI
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS--TFDLAILLSCIHITIK 170
Query: 507 HGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRT-ALHLAAMNGYADLCRF 565
+GH+ M+ +LL N + + + LA N ++ +
Sbjct: 171 NGHVDMMILLLDYMTSTNTNNSL-----------------LFIPDIKLAIDNKDIEMLQA 213
Query: 566 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN 625
L + I + ++ K++++ + I + +
Sbjct: 214 LF-KYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLD 265
Score = 203 bits (518), Expect = 5e-59
Identities = 40/284 (14%), Positives = 89/284 (31%), Gaps = 24/284 (8%)
Query: 230 LAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKL 289
+ ++ + + G +A + A + + +++ + ++ A +
Sbjct: 5 SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGA-LK-NLLE 61
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
LH AA V+ LL G + G T L+ A SGN
Sbjct: 62 NEFPLHQAATLEDTKIVKILLFS-----------GLDD--SQFDDKGNTALYYAVDSGNM 108
Query: 350 NVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
V+L + ++ + + A V++V LS +C+
Sbjct: 109 QTVKLFV-KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS--TFDLAILLSCI 165
Query: 410 HIAATHGHLQMVEVLLGQGAEINATDKGGA-RSIHTAARYGHVGIINTLLQKGEKVDVTT 468
HI +GH+ M+ +LL N + I A + ++ L + + +
Sbjct: 166 HITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-SA 224
Query: 469 NNLAC--GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHL 510
N + +++ + + +S + +
Sbjct: 225 NLENVLLDDAEIAKMIIEKHVEY-KSDSYTKDLDIVKNNKLDEI 267
Score = 188 bits (480), Expect = 7e-54
Identities = 43/307 (14%), Positives = 99/307 (32%), Gaps = 40/307 (13%)
Query: 158 IHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVIS 217
+ ++ G++ ++ A +V ++ L ++
Sbjct: 4 LSRINTWKSKQLKSFLSSKD---TFKADVHGHSASYYAIADNNVRLVCTL--------LN 52
Query: 218 AR---NRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 274
A N + PL AA +V++L+ +G + + G TA++ A +G+ Q ++
Sbjct: 53 AGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVK 112
Query: 275 EMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGS 333
L Y K T+ + A V LS +P T
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA------------- 159
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNP-LHLACFGGHVTVVGLLLS 392
++ +H+ +G+ +++ LLL + + P + LA + ++ L
Sbjct: 160 -ILLSCIHITIKNGHVDMMILLL-DYMTSTNTNN-SLLFIPDIKLAIDNKDIEMLQALFK 216
Query: 393 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVG 452
N + ++ ++++ + E + I + +
Sbjct: 217 YDI--------NIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEII 268
Query: 453 IINTLLQ 459
N L+
Sbjct: 269 SKNKELR 275
Score = 178 bits (455), Expect = 2e-50
Identities = 38/360 (10%), Positives = 90/360 (25%), Gaps = 98/360 (27%)
Query: 60 LAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTL 119
K G +A + A + L L+ + A+ ++L
Sbjct: 5 SRINTWKSKQL-KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLL-NAGALKNLLE- 61
Query: 120 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 179
+ PLH AA ++ K+LL G DD+G ++ A + + ++F+
Sbjct: 62 -NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV-KKNW 119
Query: 180 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 239
+ K G T A ++
Sbjct: 120 RLMFYGKTGW-----------------------------------KTSFYHAVMLNDVSI 144
Query: 240 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAY 299
V + + + + ++ +H+
Sbjct: 145 VSYFLSEIP----------------------------------STFDLAILLSCIHITIK 170
Query: 300 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTP-LHLAAYSGNENVVRLLLNS 358
G D + LL + S + P + LA + + +++ L
Sbjct: 171 NGHVDMMILLLDY-----------MTST--NTNNSLLFIPDIKLAIDNKDIEMLQALF-K 216
Query: 359 AGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHL 418
+ + + + +++ + + +S + +
Sbjct: 217 YDINIYS--------ANLENVLLDDAEIAKMIIEKHVE-YKSDSYTKDLDIVKNNKLDEI 267
Score = 173 bits (442), Expect = 1e-48
Identities = 49/334 (14%), Positives = 93/334 (27%), Gaps = 68/334 (20%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G I + + + D G SA + A +++ LL A
Sbjct: 1 GMDLSRINT--WKSKQL-KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
N LH AA + + L+ + T L+ A ++G +Q KL
Sbjct: 58 NLLE--NEFPLHQAATLEDTKIVKILL-FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLF 114
Query: 141 LDLGASIDATDDQGQK-PIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 199
+ + G K + A N + FL P T
Sbjct: 115 VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP--STFDLAILL---------- 162
Query: 200 SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFT 259
+ + + + GH +++ +L+ S N F
Sbjct: 163 --------------------------SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFI 196
Query: 260 AV-HLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVK 318
LA N ++L+ + N+Y +A A+ + ++
Sbjct: 197 PDIKLAIDNKDIEMLQALFKYDI-NIY------SANLENVLLDDAEIAKMIIEK------ 243
Query: 319 SDPPTGASFLGELGSESGMTPLHLAAYSGNENVV 352
E S+S L + + + ++
Sbjct: 244 -----HV----EYKSDSYTKDLDIVKNNKLDEII 268
Score = 172 bits (438), Expect = 4e-48
Identities = 38/276 (13%), Positives = 86/276 (31%), Gaps = 19/276 (6%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
K G + A ++ LV T+LN A ++ + LH AA K+ LL
Sbjct: 25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILL 82
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR-KQTPLHLAAEAGQ 133
+ G TAL+ A +G + V + +T + A
Sbjct: 83 FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV-KKNWRLMFYGKTGWKTSFYHAVMLND 141
Query: 134 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA- 192
+ + L S IH+ +N ++ + L + +
Sbjct: 142 VSIVSYFLSEIPSTFDLAI-LLSCIHITIKNGHVDMMILLL-DYMTSTNTNNSLLFIPDI 199
Query: 193 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 252
+A + +++ L + + A + +++++
Sbjct: 200 KLAIDNKDIEMLQAL--------FKYDINIY--SANLENVLLDDAEIAKMIIEKHVEYKS 249
Query: 253 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKK 288
++ T + N ++++ + + + + V K
Sbjct: 250 DSYTKDL--DIVKNNKLDEIISKNKELRLMYVNCVK 283
Score = 86.0 bits (214), Expect = 2e-18
Identities = 14/127 (11%), Positives = 47/127 (37%), Gaps = 10/127 (7%)
Query: 10 ISK-ALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRS-ALHLAAEHGYL 67
+S+ +I + + I GH++++ +L+ + + + LA ++ +
Sbjct: 149 LSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI 208
Query: 68 KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHL 127
++ AL + I +A + A++ + ++ + + K +
Sbjct: 209 EMLQALFKYDINIY-------SANLENVLLDDAEIAKMII-EKHVEYKSDSYTKDLDIVK 260
Query: 128 AAEAGQL 134
+ ++
Sbjct: 261 NNKLDEI 267
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 213 bits (546), Expect = 2e-63
Identities = 66/279 (23%), Positives = 102/279 (36%), Gaps = 46/279 (16%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
+ + A G R L+ AG V + LH A + +V +S+
Sbjct: 7 DYSTWDIVKATQYGIYERCRELV-EAGYDVRQPD-KENVTLLHWAAINNRIDLVKYYISK 64
Query: 394 AADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGI 453
A + Q T LH A GHL MV L+ GA+ + D G IH AA++GH I
Sbjct: 65 GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSI 124
Query: 454 INTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGH-LQM 512
+ L+ KG+ VD D+NG T L AA H +
Sbjct: 125 VAYLIAKGQDVD--------------------------MMDQNGMTPLMWAAYRTHSVDP 158
Query: 513 VEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAA 572
+LL +N DK TALH A + G + L+ + A
Sbjct: 159 TRLLLTFNVSVNLGDKYH----------------KNTALHWAVLAGNTTVISLLL-EAGA 201
Query: 573 VIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 611
+D ++ ++ L LA + + + L + + +
Sbjct: 202 NVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240
Score = 207 bits (530), Expect = 3e-61
Identities = 60/271 (22%), Positives = 105/271 (38%), Gaps = 48/271 (17%)
Query: 369 ENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 428
+ + A G L+ D+ + DK T LH AA + + +V+ + +G
Sbjct: 7 DYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKG 65
Query: 429 AEINATDK-GGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAA 487
A ++ + +H A R GH+ ++ L++ G +
Sbjct: 66 AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL--------------------- 104
Query: 488 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVG 547
D G +C+H+AA GH +V L+ +G +++ D+ G
Sbjct: 105 -----IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN-----------------G 142
Query: 548 RTALHLAAMNGY-ADLCRFLVHDHAAVIDILT-LRKQTPLHLAAEAGQLQVCKLLLDLGA 605
T L AA + D R L+ +++ K T LH A AG V LLL+ GA
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLL-TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201
Query: 606 SIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 636
++DA + +G+ + +A Q + A
Sbjct: 202 NVDAQNIKGESALDLAKQRKNVWMINHLQEA 232
Score = 204 bits (522), Expect = 4e-60
Identities = 64/277 (23%), Positives = 107/277 (38%), Gaps = 45/277 (16%)
Query: 254 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 312
+ + A Q G + E+ + +V K VT LH AA + D V+ +S
Sbjct: 6 DDYSTWDIVKATQYGIYERCRELVEAGY-DVRQPDKENVTLLHWAAINNRIDLVKYYISK 64
Query: 313 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGY 372
GA + +LG + TPLH A G+ ++V L+ G G
Sbjct: 65 -----------GAI-VDQLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSLID-GEGC 110
Query: 373 NPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGH-LQMVEVLLGQGAEI 431
+ +HLA GH ++V L+++ D + D+NG T L AA H + +LL +
Sbjct: 111 SCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169
Query: 432 NATDK-GGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLL 490
N DK ++H A G+ +I+ LL+ G VD
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD------------------------- 204
Query: 491 QSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATD 527
+ + G++ L +A ++ M+ L +
Sbjct: 205 -AQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240
Score = 181 bits (461), Expect = 9e-52
Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 8/238 (3%)
Query: 47 VDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
+ D + A ++G + C L+ + + T LH AA+N DL ++
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 107 VHDHAAVIDILTL-RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN 165
+ A++D L TPLH A G L + L+ GA D +G IH+AAQ
Sbjct: 62 I-SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFG 120
Query: 166 FPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG-SVGVIEELMKFDRSGV-ISARNRVT 223
+ + A V ++G T AA + SV L+ F V ++ ++
Sbjct: 121 HTSIVAYLI-AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF---NVSVNLGDKYH 176
Query: 224 EATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 281
+ T L A G+ V+ +L++AGA+ +N G +A+ LA Q + ++ ++ ++
Sbjct: 177 KNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234
Score = 175 bits (447), Expect = 6e-50
Identities = 50/237 (21%), Positives = 80/237 (33%), Gaps = 45/237 (18%)
Query: 400 SADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQ 459
D + A +G + L+ G ++ DK +H AA + ++ +
Sbjct: 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63
Query: 460 KGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQ 519
KG VD +L T LH A GHL MV L+
Sbjct: 64 KGAIVDQLGGDL-------------------------NSTPLHWATRQGHLSMVVQLMKY 98
Query: 520 GAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTL 579
GA+ + D G + +HLAA G+ + +L+ +D++
Sbjct: 99 GADPSLIDG-----------------EGCSCIHLAAQFGHTSIVAYLI-AKGQDVDMMDQ 140
Query: 580 RKQTPLHLAAEAG-QLQVCKLLLDLGASIDATDDQ-GQKPIHVAAQNNFPEVAQIFL 634
TPL AA + +LLL S++ D +H A V + L
Sbjct: 141 NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197
Score = 141 bits (359), Expect = 4e-38
Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 44/205 (21%)
Query: 431 INATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLL 490
+ D I A +YG L++ G V
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVR------------------------- 36
Query: 491 QSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTA 550
DK T LH AA + + +V+ + +GA ++ + T
Sbjct: 37 -QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG----------------DLNSTP 79
Query: 551 LHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 610
LH A G+ + L+ + A ++ + +HLAA+ G + L+ G +D
Sbjct: 80 LHWATRQGHLSMVVQLM-KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 611 DDQGQKPIHVAAQN-NFPEVAQIFL 634
D G P+ AA + + ++ L
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLL 163
Score = 140 bits (356), Expect = 1e-37
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
TPL A +GH+ +V ++ A + D EG S +HLAA+ G+ + L+ +
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 81 NSKSRVGRTALHLAAMNGY-ADLCRFLVHDHAAVIDILT-LRKQTPLHLAAEAGQLQVCK 138
+ + G T L AA + D R L+ +++ K T LH A AG V
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLL-TFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 139 LLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 176
LLL+ GA++DA + +G+ + +A Q + A
Sbjct: 195 LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 212 bits (543), Expect = 8e-63
Identities = 72/304 (23%), Positives = 113/304 (37%), Gaps = 65/304 (21%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
G TPL +A+ SG G + V+ + +
Sbjct: 8 PDGFTPLMIASCSGG----------------------GLETGNSEEEEDAPAVISDFIYQ 45
Query: 394 AADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGI 453
A L D+ G+T LH+AA + + LL A+ N D G +H A G+
Sbjct: 46 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 105
Query: 454 INTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMV 513
L++ A DL + +G T L +AA M+
Sbjct: 106 FQILIRNR------------------------ATDL-DARMHDGTTPLILAARLAVEGML 140
Query: 514 EVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV 573
E L+ A++NA D + G++ALH AA D L+ + A
Sbjct: 141 EDLINSHADVNAVDDL-----------------GKSALHWAAAVNNVDAAVVLL-KNGAN 182
Query: 574 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
D+ R++TPL LAA G + K+LLD A+ D TD + P +A + ++ ++
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Query: 634 LRAH 637
H
Sbjct: 243 DLEH 246
Score = 206 bits (526), Expect = 2e-60
Identities = 67/319 (21%), Positives = 106/319 (33%), Gaps = 77/319 (24%)
Query: 254 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 313
GFT + +A+ +G G+ + + + +
Sbjct: 7 GPDGFTPLMIASCSGG--------------------GLETGNSEEEEDAPAVISDFIYQ- 45
Query: 314 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYN 373
GAS + +G T LHLAA + + LL A + Q G
Sbjct: 46 ----------GASLHNQ-TDRTGETALHLAARYSRSDAAKRLL-EASADANIQD-NMGRT 92
Query: 374 PLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINA 433
PLH A V +L+ A L + +G T L +AA M+E L+ A++NA
Sbjct: 93 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152
Query: 434 TDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSA 493
D G ++H AA +V LL+ G D+
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-------------------------- 186
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
+ +T L +AA G + +VLL A + TD + R +
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFANRDITDH-----------------MDRLPRDI 229
Query: 554 AAMNGYADLCRFLVHDHAA 572
A + D+ R L +H
Sbjct: 230 AQERMHHDIVRLLDLEHHH 248
Score = 178 bits (453), Expect = 2e-50
Identities = 59/312 (18%), Positives = 100/312 (32%), Gaps = 73/312 (23%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
TPL +A+ +G G + + + + P V F+ SL
Sbjct: 11 FTPLMIASCSGG--------------------GLETGNSEEEEDAPAVISDFIYQGASLH 50
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
T + G T L LAA ++ +
Sbjct: 51 NQTDRTGET------------------------------------ALHLAARYSRSDAAK 74
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 300
L++A A ++ G T +H A V + + ++A ++ ++ G T L +AA
Sbjct: 75 RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134
Query: 301 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 360
+ +L++ A + G + LH AA N + +LL G
Sbjct: 135 AVEGMLEDLINS-----------HADV--NAVDDLGKSALHWAAAVNNVDAAVVLL-KNG 180
Query: 361 VQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQM 420
D Q PL LA G +LL A+ D + IA H +
Sbjct: 181 ANKDMQN-NREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDI 238
Query: 421 VEVLLGQGAEIN 432
V +L + +
Sbjct: 239 VRLLDLEHHHHH 250
Score = 163 bits (415), Expect = 2e-45
Identities = 60/274 (21%), Positives = 93/274 (33%), Gaps = 51/274 (18%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVF--------------DQEGRSALHL 60
N + G+TPL+IA G V D+ G +ALHL
Sbjct: 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 120
AA + LL A N + +GRT LH A + + L+ + A +D
Sbjct: 64 AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
TPL LAA + + L++ A ++A DD G+ +H AA N + A L + +
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV-VLLKNGAN 182
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 240
TPL LAA G
Sbjct: 183 KDMQNNREE------------------------------------TPLFLAAREGSYETA 206
Query: 241 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 274
+VL+ A+ + +A + H+ ++
Sbjct: 207 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 240
Score = 158 bits (403), Expect = 8e-44
Identities = 59/272 (21%), Positives = 101/272 (37%), Gaps = 35/272 (12%)
Query: 47 VDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
V+V +G + L +A+ G G + +
Sbjct: 3 VNVRGPDGFTPLMIASCSGG--------------------GLETGNSEEEEDAPAVISDF 42
Query: 107 VHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNF 166
++ A++ + +T LHLAA + K LL+ A + D+ G+ P+H A +
Sbjct: 43 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 102
Query: 167 PEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA- 225
V QI +R + + A DG T +AA G++E+L I++ V
Sbjct: 103 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL--------INSHADVNAVD 154
Query: 226 ----TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 281
+ L AA + + VL+K GA+ +N T + LAA+ G + + + A
Sbjct: 155 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 214
Query: 282 LNVYSK-KLGVTALHVAAYFGQADTVRELLSH 312
N + +A D VR L
Sbjct: 215 -NRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245
Score = 149 bits (378), Expect = 2e-40
Identities = 46/205 (22%), Positives = 77/205 (37%), Gaps = 29/205 (14%)
Query: 430 EINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADL 489
++N G + A+ G ++ V+ + + A L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEE------------DAPAVISDFIYQGASL 49
Query: 490 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRT 549
D+ G+T LH+AA + + LL A+ N D + GRT
Sbjct: 50 HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-----------------GRT 92
Query: 550 ALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 609
LH A + + L+ + A +D TPL LAA + + L++ A ++A
Sbjct: 93 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152
Query: 610 TDDQGQKPIHVAAQNNFPEVAQIFL 634
DD G+ +H AA N + A + L
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLL 177
Score = 118 bits (298), Expect = 8e-30
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
L+ + G TPL++A ++ ++N+HA V+ D G+SALH AA + L
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L + A + ++ T L LAA G + + L+ DH A DI + P +A E
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIAQERMH 235
Query: 134 LQVCKLLLDLGASI 147
+ +LL
Sbjct: 236 HDIVRLLDLEHHHH 249
Score = 62.1 bits (152), Expect = 1e-10
Identities = 15/69 (21%), Positives = 26/69 (37%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ Q + TPL +A G E +L++ A D+ D R +A E + + L
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Query: 75 THKAFINSK 83
+
Sbjct: 244 LEHHHHHHH 252
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 210 bits (536), Expect = 4e-62
Identities = 74/280 (26%), Positives = 106/280 (37%), Gaps = 52/280 (18%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLLN---SAGVQVDAQTQENGYNPLHLACFGGHVTVVGLL 390
E G TPLH+A GN V L+N G ++D PLHLA +VV LL
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-NLRQTPLHLAVITTLPSVVRLL 65
Query: 391 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAE----INATDKGGARSIHTAA 446
++ A + D++G+T H+A H + LL A + A + G ++H A
Sbjct: 66 VTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 447 RYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAAT 506
V LLL R AD+ K+G++ L A
Sbjct: 125 NTECQET-------------------------VQLLLERGADIDAVDIKSGRSPLIHAVE 159
Query: 507 HGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
+ L MV++LL GA +NA G +ALH A+ G L R L
Sbjct: 160 NNSLSMVQLLLQHGANVNAQMY-----------------SGSSALHSASGRGLLPLVRTL 202
Query: 567 VHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
V A + TPL +A + + + AS
Sbjct: 203 V-RSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 206 bits (527), Expect = 9e-61
Identities = 57/270 (21%), Positives = 102/270 (37%), Gaps = 44/270 (16%)
Query: 369 ENGYNPLHLACFGGHVTVVGLLLSRA----ADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
E+G PLH+A G++ V L++ +L + +T LH+A +V +L
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 425 LGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLS 484
+ GA A D+ G + H A + + LL +
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE--------------- 110
Query: 485 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKS 544
+ + +G T LH+A + V++LL +GA+I+A D
Sbjct: 111 -------ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI---------------- 147
Query: 545 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 604
+ GR+ L A N + + L+ H A ++ + LH A+ G L + + L+ G
Sbjct: 148 KSGRSPLIHAVENNSLSMVQLLL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG 206
Query: 605 ASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
A + P+ VA ++ +
Sbjct: 207 ADSSLKNCHNDTPLMVARSRRVIDILRGKA 236
Score = 193 bits (493), Expect = 4e-56
Identities = 60/275 (21%), Positives = 107/275 (38%), Gaps = 47/275 (17%)
Query: 254 NKTGFTAVHLAAQNGHNQVLE---EMRSSKALNVYSK-KLGVTALHVAAYFGQADTVREL 309
++ G T +H+A G+ + + + L T LH+A VR L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 310 LSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN---SAGVQVDAQ 366
++ GAS G T HLA + +R LL+ + ++A+
Sbjct: 66 VTA-----------GASP--MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112
Query: 367 TQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLG 426
+G LH+A V LLL R AD+ K+G++ L A + L MV++LL
Sbjct: 113 N-YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ 171
Query: 427 QGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRA 486
GA +NA G+ ++H+A+ G + ++ TL++ G +
Sbjct: 172 HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL-------------------- 211
Query: 487 ADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
+ + T L +A + + ++ + A
Sbjct: 212 ------KNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 188 bits (479), Expect = 3e-54
Identities = 71/286 (24%), Positives = 116/286 (40%), Gaps = 51/286 (17%)
Query: 180 LVTATTKDGNTCAHIAAMQGSVGVIEELMK-FDRSGV-ISARNRVTEATPLQLAAEGGHA 237
+ T +DG+T HIA +QG++ + L+ F + G + N TPL LA
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLP 59
Query: 238 NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA 297
+VVR+LV AGAS ++ G TA HLA ++
Sbjct: 60 SVVRLLVTAGASPMALDRHGQTAAHLACEHRS---------------------------- 91
Query: 298 AYFGQADTVRELLSHVPGTVKSDPPTGASFLG--ELGSESGMTPLHLAAYSGNENVVRLL 355
+R LL A E + G+T LH+A + + V+LL
Sbjct: 92 -----PTCLRALLDS-----------AAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135
Query: 356 LNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATH 415
L G +DA ++G +PL A +++V LLL A+ + + +G + LH A+
Sbjct: 136 L-ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGR 193
Query: 416 GHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
G L +V L+ GA+ + + + A + I+ +
Sbjct: 194 GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239
Score = 175 bits (447), Expect = 7e-50
Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 16/246 (6%)
Query: 14 LNKQTSIGWTPLLIACNRGHME----LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 69
+ G TPL IA +G++ LVN +D+++ ++ LHLA V
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 70 CDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV----IDILTLRKQTPL 125
L+T A + R G+TA HLA + R L+ D AA ++ T L
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALL-DSAAPGTLDLEARNYDGLTAL 120
Query: 126 HLAAEAGQLQVCKLLLDLGASIDATDDQ-GQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 184
H+A + +LLL+ GA IDA D + G+ P+ A +NN + Q+ L H + V A
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-QHGANVNAQ 179
Query: 185 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVL 243
G++ H A+ +G + ++ L++ SG S +N TPL +A +++R
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVR---SGADSSLKNC-HNDTPLMVARSRRVIDILRGK 235
Query: 244 VKAGAS 249
AS
Sbjct: 236 ATRPAS 241
Score = 129 bits (328), Expect = 6e-34
Identities = 60/252 (23%), Positives = 96/252 (38%), Gaps = 51/252 (20%)
Query: 431 INATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLL 490
D+ G +H A G++ ++ L+ L + L
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVN---------------------LFQQGGRE-L 39
Query: 491 QSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTA 550
+ +T LH+A +V +L+ GA A D+ G+TA
Sbjct: 40 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR-----------------HGQTA 82
Query: 551 LHLAAMNGYADLCRFLVHDHAAV----IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
HLA + R L+ D AA ++ T LH+A + +LLL+ GA
Sbjct: 83 AHLACEHRSPTCLRALL-DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD 141
Query: 607 IDATDDQ-GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL-IAAGKHCEGM 664
IDA D + G+ P+ A +NN + Q+ L H + V A A L A+G+ +
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLL-QHGANVNAQMYSGSSA--LHSASGRGLLPL 198
Query: 665 ATELLALAAGAD 676
L + +GAD
Sbjct: 199 V-RTL-VRSGAD 208
Score = 121 bits (306), Expect = 4e-31
Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
Query: 7 GTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQE-GRSALHLAAEHG 65
+ L + G T L +A N E V +L A +D D + GRS L A E+
Sbjct: 102 AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN 161
Query: 66 YLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPL 125
L + LL H A +N++ G +ALH A+ G L R LV A + TPL
Sbjct: 162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV-RSGADSSLKNCHNDTPL 220
Query: 126 HLAAEAGQLQVCKLLLDLGAS 146
+A + + + AS
Sbjct: 221 MVARSRRVIDILRGKATRPAS 241
Score = 119 bits (301), Expect = 2e-30
Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 489 LLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGR 548
+ AD++G T LHIA G+L V L+ + ++ + + +
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLV-------------NLFQQGGRELDIYNNLRQ 47
Query: 549 TALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS-- 606
T LHLA + + R LV A L QT HLA E + LLD A
Sbjct: 48 TPLHLAVITTLPSVVRLLV-TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106
Query: 607 --IDATDDQGQKPIHVAAQNNFPEVAQIFL 634
++A + G +HVA E Q+ L
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLL 136
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 208 bits (532), Expect = 1e-61
Identities = 68/282 (24%), Positives = 102/282 (36%), Gaps = 58/282 (20%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
+ LH AA G D L+ GA+ + SE TPL AA + +
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQA-----------GANI--DTCSEDQRTPLMEAAENNHL 57
Query: 350 NVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
V+ L+ AG VD + G LHLA GH VV LLS + D G T +
Sbjct: 58 EAVKYLI-KAGALVDPKD-AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Query: 410 HIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTN 469
A + H+ +V++LL +G++IN D +H AA G V I LL +
Sbjct: 116 IWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH---- 171
Query: 470 NLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKV 529
+ + +G + LHIAA V + L + +++ +K
Sbjct: 172 ----------------------AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK- 208
Query: 530 CDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHA 571
G T L A++N +
Sbjct: 209 ----------------EGETPLQCASLNSQVWSALQMSKALQ 234
Score = 206 bits (527), Expect = 7e-61
Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 26/243 (10%)
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
+N ++ LH AA GH+ + +L+ GA I+ + + AA H+ + L++ G
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 462 EKVDVTTNN------LA--CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMV 513
VD LA GH VV LLS + D G T + A + H+ +V
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 514 EVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV 573
++LL +G++IN D LH AA +G D+ L+
Sbjct: 128 KLLLSKGSDINIRDN-----------------EENICLHWAAFSGCVDIAEILL-AAKCD 169
Query: 574 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
+ + + +PLH+AA + L L + + + +G+ P+ A+ N+ A
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229
Query: 634 LRA 636
+A
Sbjct: 230 SKA 232
Score = 183 bits (468), Expect = 9e-53
Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 22/251 (8%)
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANV 239
++ + H AA G V + L++ +G I + + TPL AAE H
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQ---AGANIDTCSE-DQRTPLMEAAENNHLEA 59
Query: 240 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAA 298
V+ L+KAGA ++ G T +HLAA+ GH +V++ + S+ ++V + G T + A
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 299 YFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS 358
+ D V+ LLS G+ + LH AA+SG ++ +LL +
Sbjct: 120 EYKHVDLVKLLLSK-----------GSDI--NIRDNEENICLHWAAFSGCVDIAEILL-A 165
Query: 359 AGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHL 418
A + A +G +PLH+A V L LSR +D + +K G+T L A+ + +
Sbjct: 166 AKCDLHAVN-IHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQV 223
Query: 419 QMVEVLLGQGA 429
+
Sbjct: 224 WSALQMSKALQ 234
Score = 179 bits (456), Expect = 4e-51
Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 14/239 (5%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ +PL A GH+++ + ++ A +D ++ R+ L AAE+ +L+ L+
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
A ++ K G T LHLAA G+ ++ ++L+ + ++ TP+ A E +
Sbjct: 65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI 194
+ KLLL G+ I+ D++ +H AA + ++A+ L A + A G++ HI
Sbjct: 125 DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE-ILLAAKCDLHAVNIHGDSPLHI 183
Query: 195 AAMQGSVGVIEELMKFDRSGVISARNRVTEA-----TPLQLAAEGGHANVVRVLVKAGA 248
AA + + +S + VT TPLQ A+ + KA
Sbjct: 184 AARENRYDCVVLF--------LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 177 bits (452), Expect = 1e-50
Identities = 68/317 (21%), Positives = 101/317 (31%), Gaps = 85/317 (26%)
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 139
+ + R+ LH AA G+ D+C LV A ID + ++TPL AAE L+ K
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLV-QAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 140 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 199
L+ GA +D D +G +H+AA+ EV Q L V G T
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT--------- 113
Query: 200 SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFT 259
P+ A E H ++V++L+ G+ +
Sbjct: 114 ---------------------------PMIWATEYKHVDLVKLLLSKGSDINIRDNEENI 146
Query: 260 AVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKS 319
+H AA +G D LL+
Sbjct: 147 CLHWAAFSGC---------------------------------VDIAEILLAA------- 166
Query: 320 DPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLAC 379
+ G +PLH+AA + V L L S V + + G PL A
Sbjct: 167 ----KCDL--HAVNIHGDSPLHIAARENRYDCVVLFL-SRDSDVTLKN-KEGETPLQCAS 218
Query: 380 FGGHVTVVGLLLSRAAD 396
V + D
Sbjct: 219 LNSQVWSALQMSKALQD 235
Score = 177 bits (452), Expect = 1e-50
Identities = 63/271 (23%), Positives = 105/271 (38%), Gaps = 41/271 (15%)
Query: 44 HARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLC 103
H + Q RS LH AAE G++ +C L+ A I++ S RT L AA N + +
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 104 RFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS-IDATDDQGQKPIHVAA 162
++L+ A++D T LHLAA+ G +V + LL G ++ DD G P+ A
Sbjct: 61 KYLI-KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 163 QNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRV 222
+ ++ + L + S + + N
Sbjct: 120 EYKHVDLVK-LLLSKGSDINIRDNEEN--------------------------------- 145
Query: 223 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 282
L AA G ++ +L+ A N G + +H+AA+ + S +
Sbjct: 146 ---ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS- 201
Query: 283 NVYSK-KLGVTALHVAAYFGQADTVRELLSH 312
+V K K G T L A+ Q + ++
Sbjct: 202 DVTLKNKEGETPLQCASLNSQVWSALQMSKA 232
Score = 141 bits (359), Expect = 3e-38
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 43/204 (21%)
Query: 431 INATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLL 490
+ +H AA GHV I + L+Q G +D
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID------------------------- 38
Query: 491 QSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTA 550
+ ++ +T L AA + HL+ V+ L+ GA ++ D G T
Sbjct: 39 -TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE-----------------GSTC 80
Query: 551 LHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 610
LHLAA G+ ++ ++L+ + ++ TP+ A E + + KLLL G+ I+
Sbjct: 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140
Query: 611 DDQGQKPIHVAAQNNFPEVAQIFL 634
D++ +H AA + ++A+I L
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILL 164
Score = 58.6 bits (143), Expect = 2e-09
Identities = 13/65 (20%), Positives = 26/65 (40%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
L+ G +PL IA + V L+ + V + ++EG + L A+ + + +
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229
Query: 74 LTHKA 78
Sbjct: 230 SKALQ 234
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 201 bits (514), Expect = 4e-59
Identities = 62/266 (23%), Positives = 102/266 (38%), Gaps = 42/266 (15%)
Query: 369 ENGYNPLHLACFGGHVT----VVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
E+G + LHLA V+ + A L + +T LH+A ++ E L
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 425 LGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLS 484
LG G + D G +H A G + + L Q + +
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI--------------- 109
Query: 485 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKS 544
L++ + NG TCLH+A+ HG+L +VE+L+ GA++NA +
Sbjct: 110 -----LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN-------------- 150
Query: 545 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 604
GRTALHLA DL L+ A ++ +T + +P L ++ + L L
Sbjct: 151 --GRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207
Query: 605 ASIDATDDQGQKPIHVAAQNNFPEVA 630
+ + ++ F E
Sbjct: 208 LENLQMLPESEDEESYDTESEFTEFT 233
Score = 175 bits (446), Expect = 6e-50
Identities = 59/270 (21%), Positives = 87/270 (32%), Gaps = 49/270 (18%)
Query: 254 NKTGFTAVHLAAQNGHNQVLEEMRS---SKALNVYSK-KLGVTALHVAAYFGQADTVREL 309
+ G + +HLA + + E+ + + L T LH+A Q + L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 310 LSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL-----NSAGVQVD 364
L G EL G TPLHLA G V +L +
Sbjct: 65 LGA-----------GCDP--ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111
Query: 365 AQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
A NG+ LHLA G++ +V LL+S AD+ NG+T LH+A + +V +L
Sbjct: 112 ATN-YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170
Query: 425 LGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLS 484
L GA++N G I L Q
Sbjct: 171 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT----------------------- 207
Query: 485 RAADLLQSADKNGKTCLHIAATHGHLQMVE 514
+ LQ + + E
Sbjct: 208 --LENLQ-MLPESEDEESYDTESEFTEFTE 234
Score = 174 bits (444), Expect = 1e-49
Identities = 50/240 (20%), Positives = 84/240 (35%), Gaps = 43/240 (17%)
Query: 402 DKNGKTCLHIAATHGH----LQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTL 457
++G + LH+A H ++++ + G A +N + +H A I L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 458 LQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 517
L G ++ D G T LH+A G L V VL
Sbjct: 65 LGAGCDPEL--------------------------RDFRGNTPLHLACEQGCLASVGVLT 98
Query: 518 GQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDIL 577
+ + + + + G T LHLA+++GY + LV A ++
Sbjct: 99 QSCTTPH-----------LHSILKATNYNGHTCLHLASIHGYLGIVELLV-SLGADVNAQ 146
Query: 578 TLRK-QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 636
+T LHLA + + LLL GA ++ QG P + + Q +
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206
Score = 161 bits (410), Expect = 5e-45
Identities = 48/270 (17%), Positives = 89/270 (32%), Gaps = 47/270 (17%)
Query: 16 KQTSIGWTPLLIACNRGH----MELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCD 71
+ T G + L +A ME++ + + A ++ + ++ LHLA ++ +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 72 ALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV-----HDHAAVIDILTLRKQTPLH 126
ALL + G T LHLA G L +++ T LH
Sbjct: 63 ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122
Query: 127 LAAEAGQLQVCKLLLDLGASIDATDDQ-GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATT 185
LA+ G L + +LL+ LGA ++A + G+ +H+A P++ + L+ V T
Sbjct: 123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVT 181
Query: 186 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 245
G + P QL + + L +
Sbjct: 182 YQGYS------------------------------------PYQLTWGRPSTRIQQQLGQ 205
Query: 246 AGASCTDENKTGFTAVHLAAQNGHNQVLEE 275
++ + E+
Sbjct: 206 LTLENLQMLPESEDEESYDTESEFTEFTED 235
Score = 158 bits (403), Expect = 5e-44
Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 12/229 (5%)
Query: 87 GRTALHLAAMNGYADLCRFLVH---DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
G + LHLA ++ L ++ A ++ +QTPLHLA Q ++ + LL
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFL-----RAHPSLVTATTKDGNTCAHIAAMQ 198
G + D +G P+H+A + + S++ AT +G+TC H+A++
Sbjct: 68 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127
Query: 199 GSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTG 257
G +G++E L+ G ++A+ T L LA + + ++V +L+K GA G
Sbjct: 128 GYLGIVELLVS---LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 184
Query: 258 FTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV 306
++ L ++ +++ N+ +
Sbjct: 185 YSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 147 bits (374), Expect = 3e-40
Identities = 46/200 (23%), Positives = 72/200 (36%), Gaps = 9/200 (4%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
LN Q ++ TPL +A E+ +L ++ D G + LHLA E G L L
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 74 LTHKA------FINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRK-QTPLH 126
+ + + G T LHLA+++GY + LV A ++ +T LH
Sbjct: 98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV-SLGADVNAQEPCNGRTALH 156
Query: 127 LAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTK 186
LA + + LLL GA ++ QG P + + Q L
Sbjct: 157 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQ-QLGQLTLENLQMLP 215
Query: 187 DGNTCAHIAAMQGSVGVIEE 206
+ E+
Sbjct: 216 ESEDEESYDTESEFTEFTED 235
Score = 132 bits (335), Expect = 6e-35
Identities = 49/279 (17%), Positives = 92/279 (32%), Gaps = 56/279 (20%)
Query: 433 ATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQS 492
+ G +H A + + +++ + A L
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIR---------------------QVKGDLAF-LNF 40
Query: 493 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALH 552
+ +T LH+A ++ E LLG G + D G T LH
Sbjct: 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF-----------------RGNTPLH 83
Query: 553 LAAMNGYADLCRFLV-----HDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 607
LA G L +++ T LHLA+ G L + +LL+ LGA +
Sbjct: 84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 143
Query: 608 DATDDQ-GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL-IAAGKHCEGMA 665
+A + G+ +H+A P++ + L+ V T + + G+ +
Sbjct: 144 NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSP--YQLTWGRPSTRIQ 200
Query: 666 TELLALAAGADSAGRILTATDRRNIEFLDVLIENEQKEV 704
+L ++ + + D + + E+E E
Sbjct: 201 QQL--GQLTLENLQMLPESEDEESYD-----TESEFTEF 232
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 197 bits (503), Expect = 1e-57
Identities = 63/254 (24%), Positives = 101/254 (39%), Gaps = 43/254 (16%)
Query: 381 GGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGAR 440
G V+ + + A L D+ G+T LH+AA + + LL A+ N D G
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 441 SIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTC 500
+H A G+ L++ A L + +G T
Sbjct: 61 PLHAAVSADAQGVFQILIRNR-------------------------ATDLDARMHDGTTP 95
Query: 501 LHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYA 560
L +AA M+E L+ A++NA D +G++ALH AA
Sbjct: 96 LILAARLAVEGMLEDLINSHADVNAVDD-----------------LGKSALHWAAAVNNV 138
Query: 561 DLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHV 620
D L+ + A D+ R++TPL LAA G + K+LLD A+ D TD + P +
Sbjct: 139 DAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197
Query: 621 AAQNNFPEVAQIFL 634
A + ++ ++
Sbjct: 198 AQERMHHDIVRLLD 211
Score = 186 bits (475), Expect = 6e-54
Identities = 64/286 (22%), Positives = 96/286 (33%), Gaps = 65/286 (22%)
Query: 301 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 360
+ + + GAS L +G T LHLAA + + LL A
Sbjct: 2 DAPAVISDFIYQ-----------GAS-LHNQTDRTGETALHLAARYSRSDAAKRLL-EAS 48
Query: 361 VQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQM 420
+ Q G PLH A V +L+ A L + +G T L +AA M
Sbjct: 49 ADANIQD-NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM 107
Query: 421 VEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVG 480
+E L+ A++NA D G ++H AA +V LL+ G D
Sbjct: 108 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--------------- 152
Query: 481 LLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFI 540
+ +T L +AA G + +VLL A + TD
Sbjct: 153 -----------MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH------------ 189
Query: 541 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLH 586
+ R +A + D+ R L ++ V LH
Sbjct: 190 -----MDRLPRDIAQERMHHDIVRLLD-EYNLVR-------SPQLH 222
Score = 185 bits (473), Expect = 1e-53
Identities = 58/262 (22%), Positives = 89/262 (33%), Gaps = 47/262 (17%)
Query: 347 GNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGK 406
V+ + G + QT G LHLA LL +AD D G+
Sbjct: 2 DAPAVISDFI-YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGR 59
Query: 407 TCLHIAATHGHLQMVEVLLGQGA-EINATDKGGARSIHTAARYGHVGIINTLLQKGEKVD 465
T LH A + + ++L+ A +++A G + AAR G++ L+ V+
Sbjct: 60 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119
Query: 466 VTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINA 525
D GK+ LH AA ++ VLL GA +
Sbjct: 120 AV--------------------------DDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 153
Query: 526 TDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPL 585
+ T L LAA G + + L+ DH A DI + P
Sbjct: 154 QNNR-----------------EETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPR 195
Query: 586 HLAAEAGQLQVCKLLLDLGASI 607
+A E + +LL +
Sbjct: 196 DIAQERMHHDIVRLLDEYNLVR 217
Score = 178 bits (455), Expect = 3e-51
Identities = 56/230 (24%), Positives = 94/230 (40%), Gaps = 18/230 (7%)
Query: 234 GGHANVVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGV 291
G V+ + GAS ++ ++TG TA+HLAA+ + + + + A + + +G
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-DANIQDNMGR 59
Query: 292 TALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENV 351
T LH A + L+ + A+ L G TPL LAA E +
Sbjct: 60 TPLHAAVSADAQGVFQILIRN-----------RATDLDA-RMHDGTTPLILAARLAVEGM 107
Query: 352 VRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHI 411
+ L+ ++ V+A + G + LH A +V +LL A+ + +T L +
Sbjct: 108 LEDLI-NSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFL 164
Query: 412 AATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
AA G + +VLL A + TD A H I+ L +
Sbjct: 165 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214
Score = 174 bits (444), Expect = 9e-50
Identities = 55/238 (23%), Positives = 88/238 (36%), Gaps = 41/238 (17%)
Query: 288 KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 347
+ G TALH+AA + ++D + LL A + G TPLH A +
Sbjct: 23 RTGETALHLAARYSRSDAAKRLLEA-----------SADA--NIQDNMGRTPLHAAVSAD 69
Query: 348 NENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKT 407
+ V ++L+ + +DA+ +G PL LA ++ L++ AD + + D GK+
Sbjct: 70 AQGVFQILIRNRATDLDARM-HDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKS 127
Query: 408 CLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVT 467
LH AA ++ VLL GA + + + AAR G LL D+T
Sbjct: 128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 187
Query: 468 TNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINA 525
D + IA H +V +L +
Sbjct: 188 --------------------------DHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219
Score = 166 bits (424), Expect = 4e-47
Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 17/213 (7%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
T L LAA ++ + L++A A ++ G T +H A V + + ++A ++
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86
Query: 286 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 344
++ G T L +AA + +L++ A + G + LH AA
Sbjct: 87 ARMHDGTTPLILAARLAVEGMLEDLINS-----------HADV--NAVDDLGKSALHWAA 133
Query: 345 YSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKN 404
N + +LL G D Q PL LA G +LL A+ D
Sbjct: 134 AVNNVDAAVVLL-KNGANKDMQN-NREETPLFLAAREGSYETAKVLLDHFAN-RDITDHM 190
Query: 405 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
+ IA H +V +L + G
Sbjct: 191 DRLPRDIAQERMHHDIVRLLDEYNLVRSPQLHG 223
Score = 155 bits (394), Expect = 6e-43
Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 3/194 (1%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N+ G T L +A + +L A ++ D GR+ LH A V L+
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 75 THKAF-INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
++A ++++ G T L LAA + L+ + A ++ + ++ LH AA
Sbjct: 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWAAAVNN 137
Query: 134 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAH 193
+ +LL GA+ D +++ + P+ +AA+ E A++ L H + T
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRD 196
Query: 194 IAAMQGSVGVIEEL 207
IA + ++ L
Sbjct: 197 IAQERMHHDIVRLL 210
Score = 151 bits (385), Expect = 8e-42
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 7/219 (3%)
Query: 32 GHMELVNTMLNNHARV-DVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTA 90
+++ + A + + D+ G +ALHLAA + LL A N + +GRT
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 91 LHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 150
LH A + + L+ + A +D TPL LAA + + L++ A ++A
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121
Query: 151 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 210
DD G+ +H AA N + A + L + + T +AA +GS + L+
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLD- 179
Query: 211 DRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 248
+ + P +A E H ++VR+L +
Sbjct: 180 --HFANRDITDH-MDRLPRDIAQERMHHDIVRLLDEYNL 215
Score = 121 bits (306), Expect = 3e-31
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
L+ + G TPL++A ++ ++N+HA V+ D G+SALH AA + L
Sbjct: 85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L + A + ++ T L LAA G + + L+ DH A DI + P +A E
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIAQERMH 203
Query: 134 LQVCKLLLDLGASI 147
+ +LL +
Sbjct: 204 HDIVRLLDEYNLVR 217
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 194 bits (495), Expect = 2e-56
Identities = 61/266 (22%), Positives = 95/266 (35%), Gaps = 50/266 (18%)
Query: 374 PLHLACFGGHV-TVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 432
PLH AC V LL S+ + L D++G+ LH + + ++ LL + +N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLL-LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 433 A---TDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADL 489
D G H A G++ ++ +L + K D+
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN---------------------- 101
Query: 490 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRT 549
G TCLH+A ++ + L+ GA + DK +
Sbjct: 102 --KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF-----------------NQI 142
Query: 550 ALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD-LGASID 608
LH AA G L L + ++ + TPL A G LL++ GA D
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 609 ATDDQGQKPIHVAAQNNFPEVAQIFL 634
D++G K VA V + FL
Sbjct: 203 LVDNKGAKAEDVALNEQ---VKKFFL 225
Score = 189 bits (483), Expect = 6e-55
Identities = 61/278 (21%), Positives = 91/278 (32%), Gaps = 59/278 (21%)
Query: 289 LGVTALHVAAYFGQADTVRELL-SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 347
+ LH A + V+ELL S + + G PLH +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSK-----------PSLL--LQKDQDGRIPLHWSVSFQ 47
Query: 348 NENVVRLLL-NSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADL-LQSADKNG 405
+ LL V +D ++G+ P H+AC G++ VV L R L G
Sbjct: 48 AHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG 107
Query: 406 KTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVD 465
TCLH+A ++ + L+ GA + DK +H AA G + +I L G
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG---- 163
Query: 466 VTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQ-GAEIN 524
+ + DK G T L A GH +L+ + GAE +
Sbjct: 164 --------------------KSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 525 ATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADL 562
D G A +A
Sbjct: 203 LVDN-----------------KGAKAEDVALNEQVKKF 223
Score = 166 bits (424), Expect = 5e-47
Identities = 56/260 (21%), Positives = 91/260 (35%), Gaps = 42/260 (16%)
Query: 20 IGWTPLLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKA 78
+ PL AC V +L++ + + DQ+GR LH + ++ LL+
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 79 FINSKSRV---GRTALHLAAMNGYADLCRFLV-HDHAAVIDILTLRKQTPLHLAAEAGQL 134
+N G T H+A G ++ + L ++ +T + T LHLA
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI 194
+V + L++ GAS+ D Q P+H AA ++ ++ S V K G
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW----- 175
Query: 195 AAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLV-KAGASCTDE 253
TPL A GH + +LV K GA
Sbjct: 176 -------------------------------TPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Query: 254 NKTGFTAVHLAAQNGHNQVL 273
+ G A +A +
Sbjct: 205 DNKGAKAEDVALNEQVKKFF 224
Score = 153 bits (390), Expect = 2e-42
Identities = 56/240 (23%), Positives = 88/240 (36%), Gaps = 20/240 (8%)
Query: 122 QTPLHLAAEAGQLQ-VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHP 178
PLH A + V +LL + + D G+ P+H + E+ L +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 179 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN 238
+L G T HIA G++ V++ L ++ T L LA
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFE 121
Query: 239 VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVA 297
V + L++ GAS ++K +H AA G +++E + V + K G T L A
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 298 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 357
G D L+ GA + +L G +A NE V + LN
Sbjct: 182 LAEGHGDAAVLLVEKY----------GAEY--DLVDNKGAKAEDVAL---NEQVKKFFLN 226
Score = 151 bits (384), Expect = 1e-41
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 7/193 (3%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARV---DVFDQEGRSALHLAAEHGYLKVCD 71
++ G PL + + E+ + +L+ V D D G + H+A G L+V
Sbjct: 30 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK 89
Query: 72 ALLTH--KAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAA 129
+L K +N + G T LHLA + ++ +FL+ ++ A + I Q PLH AA
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI-ENGASVRIKDKFNQIPLHRAA 148
Query: 130 EAGQLQVCKLLLDLGAS-IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDG 188
G L++ +LL LG S ++ D QG P+ A + A + + + + G
Sbjct: 149 SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Query: 189 NTCAHIAAMQGSV 201
+A +
Sbjct: 209 AKAEDVALNEQVK 221
Score = 141 bits (359), Expect = 2e-38
Identities = 49/235 (20%), Positives = 80/235 (34%), Gaps = 42/235 (17%)
Query: 443 HTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLH 502
H A V LL S+ + L D++G+ LH
Sbjct: 7 HQACMENEFFK------------------------VQELLHSKPSLL-LQKDQDGRIPLH 41
Query: 503 IAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADL 562
+ + ++ LL + +N D G T H+A G ++
Sbjct: 42 WSVSFQAHEITSFLLSKMENVNLDDY--------------PDDSGWTPFHIACSVGNLEV 87
Query: 563 CRFLV-HDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 621
+ L ++ +T + T LHLA +V + L++ GAS+ D Q P+H A
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 622 AQNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIAAGKHCEGMATELLALAAGAD 676
A ++ ++ S V K+ L A G A LL GA+
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTP--LFHALAEGHGDAAVLLVEKYGAE 200
Score = 137 bits (347), Expect = 1e-36
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 6/165 (3%)
Query: 13 ALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV--FDQEGRSALHLAAEHGYLKVC 70
+ GWTP IAC+ G++E+V ++ + + D+ +G + LHLA + +V
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 71 DALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAE 130
L+ + A + K + + LH AA G L L + ++ + TPL A
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 131 AGQLQVCKLLLD-LGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 174
G LL++ GA D D++G K VA V + FL
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFL 225
Score = 82.1 bits (204), Expect = 1e-17
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 546 VGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 605
+ LH A M + L+H +++ + PLH + ++ LL
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 606 SI---DATDDQGQKPIHVAAQNNFPEVAQIFL 634
++ D DD G P H+A EV +
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 178 bits (454), Expect = 8e-52
Identities = 38/194 (19%), Positives = 69/194 (35%), Gaps = 29/194 (14%)
Query: 335 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRA 394
+ +H A G + + ++ E G+ PL A G + VV LL
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRI-EQENVINHTD-EEGFTPLMWAAAHGQIAVVEFLLQNG 59
Query: 395 ADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGII 454
AD Q K ++ L +A + G+ +V++LL G ++N D G + A HV +
Sbjct: 60 ADP-QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 118
Query: 455 NTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVE 514
LL+ G + +G + +A G+ + +
Sbjct: 119 KMLLESGADPTI--------------------------ETDSGYNSMDLAVALGYRSVQQ 152
Query: 515 VLLGQGAEINATDK 528
V+ ++ K
Sbjct: 153 VIESHLLKLLQNIK 166
Score = 162 bits (414), Expect = 2e-46
Identities = 38/209 (18%), Positives = 68/209 (32%), Gaps = 44/209 (21%)
Query: 404 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEK 463
+H A G + + + Q IN TD+ G + AA +G + ++ LLQ G
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 464 VDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEI 523
+ K ++ L +A + G+ +V++LL G ++
Sbjct: 62 PQL--------------------------LGKGRESALSLACSKGYTDIVKMLLDCGVDV 95
Query: 524 NATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQT 583
N D G T L A + + L+ + A I T
Sbjct: 96 NEYDWN-----------------GGTPLLYAVHGNHVKCVKMLL-ESGADPTIETDSGYN 137
Query: 584 PLHLAAEAGQLQVCKLLLDLGASIDATDD 612
+ LA G V +++ +
Sbjct: 138 SMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 161 bits (410), Expect = 6e-46
Identities = 42/180 (23%), Positives = 63/180 (35%), Gaps = 16/180 (8%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
++H A G+ + + E G TPL AA G
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQ-----------ENVI--NHTDEEGFTPLMWAAAHGQI 49
Query: 350 NVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
VV LL G + + L LAC G+ +V +LL D+ D NG T L
Sbjct: 50 AVVEFLL-QNGADPQLLG-KGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPL 106
Query: 410 HIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTN 469
A H++ V++LL GA+ G S+ A G+ + + K+
Sbjct: 107 LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 157 bits (400), Expect = 2e-44
Identities = 42/198 (21%), Positives = 67/198 (33%), Gaps = 44/198 (22%)
Query: 370 NGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 429
+H G + + + + + D+ G T L AA HG + +VE LL GA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60
Query: 430 EINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADL 489
+ KG ++ A G+ I+ LL G V+
Sbjct: 61 DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE----------------------- 97
Query: 490 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRT 549
D NG T L A H++ V++LL GA+ G
Sbjct: 98 ---YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-----------------SGYN 137
Query: 550 ALHLAAMNGYADLCRFLV 567
++ LA GY + + +
Sbjct: 138 SMDLAVALGYRSVQQVIE 155
Score = 152 bits (387), Expect = 8e-43
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 2/167 (1%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
+ +G M + T + ++ D+EG + L AA HG + V + LL + A
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
+ +AL LA GY D+ + L+ D ++ TPL A ++ K+L
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 141 LDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
L+ GA D G + +A + V Q+ + +H + K+
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQV-IESHLLKLLQNIKE 167
Score = 135 bits (342), Expect = 9e-37
Identities = 44/250 (17%), Positives = 71/250 (28%), Gaps = 85/250 (34%)
Query: 187 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 246
+ H A Q G + ++
Sbjct: 2 ANSLSVHQLAAQ------------------------------------GEMLYLATRIEQ 25
Query: 247 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV 306
++ GFT + AA +G V
Sbjct: 26 ENVINHTDEEGFTPLMWAAAHGQ---------------------------------IAVV 52
Query: 307 RELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 366
LL + GA +L + + L LA G ++V++LL GV V+
Sbjct: 53 EFLLQN-----------GADP--QLLGKGRESALSLACSKGYTDIVKMLL-DCGVDVNEY 98
Query: 367 TQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLG 426
NG PL A G HV V +LL AD +G + +A G+ + +V+
Sbjct: 99 D-WNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIES 156
Query: 427 QGAEINATDK 436
++ K
Sbjct: 157 HLLKLLQNIK 166
Score = 132 bits (335), Expect = 9e-36
Identities = 38/195 (19%), Positives = 64/195 (32%), Gaps = 38/195 (19%)
Query: 54 GRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV 113
++H A G + + + IN G T L AA +G + FL+ + A
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL-QNGAD 61
Query: 114 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
+L +++ L LA G + K+LLD G ++ D G P+ A N + +
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK-M 120
Query: 174 LRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAE 233
L + T T G + LA
Sbjct: 121 LLESGADPTIETDSGYN------------------------------------SMDLAVA 144
Query: 234 GGHANVVRVLVKAGA 248
G+ +V +V+
Sbjct: 145 LGYRSVQQVIESHLL 159
Score = 126 bits (320), Expect = 8e-34
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 1/139 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N G+TPL+ A G + +V +L N A + + SAL LA GY + L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L +N G T L A + + L+ + A I T + LA G
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL-ESGADPTIETDSGYNSMDLAVALGY 147
Query: 134 LQVCKLLLDLGASIDATDD 152
V +++ +
Sbjct: 148 RSVQQVIESHLLKLLQNIK 166
Score = 125 bits (317), Expect = 2e-33
Identities = 38/188 (20%), Positives = 65/188 (34%), Gaps = 38/188 (20%)
Query: 87 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 146
++H A G + + VI+ TPL AA GQ+ V + LL GA
Sbjct: 3 NSLSVHQLAAQGEMLYLATRI-EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 147 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEE 206
+ + +A + ++ ++ L V +G T
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGT---------------- 104
Query: 207 LMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 266
PL A G H V++L+++GA T E +G+ ++ LA
Sbjct: 105 --------------------PLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 144
Query: 267 NGHNQVLE 274
G+ V +
Sbjct: 145 LGYRSVQQ 152
Score = 124 bits (315), Expect = 4e-33
Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 39/192 (20%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
+H A G++ ++ I+ TD++G P+ AA + V + L + +
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL-QNGADP 62
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
K + L LA G+ ++V+
Sbjct: 63 QLLGKGRES------------------------------------ALSLACSKGYTDIVK 86
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 300
+L+ G + + G T + A H + ++ + S A + + G ++ +A
Sbjct: 87 MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA-DPTIETDSGYNSMDLAVAL 145
Query: 301 GQADTVRELLSH 312
G + + SH
Sbjct: 146 GYRSVQQVIESH 157
Score = 124 bits (313), Expect = 9e-33
Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 22/181 (12%)
Query: 496 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAA 555
+H A G + + + Q IN TD+ G T L AA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEE-----------------GFTPLMWAA 44
Query: 556 MNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 615
+G + FL+ + A +L +++ L LA G + K+LLD G ++ D G
Sbjct: 45 AHGQIAVVEFLL-QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGG 103
Query: 616 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIAAGKHCEGMATELLALAAGA 675
P+ A N + + L + T T + + A +++ +
Sbjct: 104 TPLLYAVHGNHVKCVK-MLLESGADPTIETDSGYNS--MDLAVALGYRSVQQVI-ESHLL 159
Query: 676 D 676
Sbjct: 160 K 160
Score = 37.4 bits (88), Expect = 0.008
Identities = 5/39 (12%), Positives = 17/39 (43%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQE 53
+T G+ + +A G+ + + ++ ++ +E
Sbjct: 129 TIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 178 bits (453), Expect = 5e-51
Identities = 42/264 (15%), Positives = 78/264 (29%), Gaps = 53/264 (20%)
Query: 333 SESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLS 392
+ G + A Y+ L + T + G ++
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELY-IEEGDIIYIT-DMSDTNWWKGTSKGRTGLI----- 61
Query: 393 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVG 452
++ + ++ LH AA G+L + L +N DK G+ +++ A GH
Sbjct: 62 -PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD 120
Query: 453 IINTLL-QKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 511
I+ L Q +++ +K G T LH AA G+
Sbjct: 121 IVEMLFTQPNIELNQQ--------------------------NKLGDTALHAAAWKGYAD 154
Query: 512 MVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHA 571
+V++LL +GA + + + A +A A L +
Sbjct: 155 IVQLLLAKGARTDLRNIE-----------------KKLAFDMATNAACASLLKKKQ-GTD 196
Query: 572 AVIDILTLRKQTPLHLAAEAGQLQ 595
AV + +
Sbjct: 197 AVRTLSNAEDYLDDEDSDLEHHHH 220
Score = 173 bits (441), Expect = 2e-49
Identities = 50/275 (18%), Positives = 84/275 (30%), Gaps = 65/275 (23%)
Query: 288 KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 347
K G + A Y + T EL + D ++ T G
Sbjct: 10 KPGQVKVFRALYTFEPRTPDELYIE-----EGDI--------IYITDMSDTNWWKGTSKG 56
Query: 348 NENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKT 407
++ V Q E+ NPLH A G+++ + L + DK G T
Sbjct: 57 RTGLIP------SNYVAEQA-ESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGST 108
Query: 408 CLHIAATHGHLQMVEVLLGQ-GAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDV 466
L+ A GH +VE+L Q E+N +K G ++H AA G+ I+ LL KG + D+
Sbjct: 109 ALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
Query: 467 TTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINAT 526
+ K +A +++ G A +
Sbjct: 169 R--------------------------NIEKKLAFDMATNAACASLLKKKQGTDAVRTLS 202
Query: 527 DKVCDALLTHKAFINSKSRVGRTALHLAAMNGYAD 561
+ + + +
Sbjct: 203 NAE-----------------DYLDDEDSDLEHHHH 220
Score = 172 bits (438), Expect = 6e-49
Identities = 46/260 (17%), Positives = 80/260 (30%), Gaps = 51/260 (19%)
Query: 366 QTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 425
+ + G + A + L D + T + G ++
Sbjct: 7 KPVKPGQVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKGRTGLIP--- 62
Query: 426 GQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSR 485
+ + +H AA+ G++ + L V+
Sbjct: 63 --SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG------------------- 101
Query: 486 AADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQ-GAEINATDKVCDALLTHKAFINSKS 544
DK G T L+ A GH +VE+L Q E+N +K
Sbjct: 102 -------LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK---------------- 138
Query: 545 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 604
+G TALH AA GYAD+ + L+ A D+ + K+ +A A + K
Sbjct: 139 -LGDTALHAAAWKGYADIVQLLL-AKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196
Query: 605 ASIDATDDQGQKPIHVAAQN 624
A ++ + +
Sbjct: 197 AVRTLSNAEDYLDDEDSDLE 216
Score = 167 bits (424), Expect = 4e-47
Identities = 46/258 (17%), Positives = 79/258 (30%), Gaps = 46/258 (17%)
Query: 254 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 313
K G V A + +E+ + +Y + T G+ +
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 68
Query: 314 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYN 373
+ES PLH AA GN + +R L V V+ + G
Sbjct: 69 ------------------QAESIDNPLHEAAKRGNLSWLRECL-DNRVGVNGLD-KAGST 108
Query: 374 PLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINA 433
L+ AC GGH +V +L ++ L +K G T LH AA G+ +V++LL +GA +
Sbjct: 109 ALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
Query: 434 TDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSA 493
+ + A ++ + +
Sbjct: 169 RNIEKKLAFDMATNAACASLLKKKQGTDAVRTL--------------------------S 202
Query: 494 DKNGKTCLHIAATHGHLQ 511
+ + H
Sbjct: 203 NAEDYLDDEDSDLEHHHH 220
Score = 165 bits (421), Expect = 9e-47
Identities = 41/250 (16%), Positives = 72/250 (28%), Gaps = 49/250 (19%)
Query: 398 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTL 457
K G+ + A + + L + +I + G G+I +
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64
Query: 458 LQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 517
++ LH AA G+L + L
Sbjct: 65 YVAE-------------------------------QAESIDNPLHEAAKRGNLSWLRECL 93
Query: 518 GQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDIL 577
+N DK G TAL+ A G+ D+ L ++
Sbjct: 94 DNRVGVNGLDK-----------------AGSTALYWACHGGHKDIVEMLFTQPNIELNQQ 136
Query: 578 TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 637
T LH AA G + +LLL GA D + + + +A + + +
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLK-KKQGT 195
Query: 638 PSLVTATTKE 647
++ T + E
Sbjct: 196 DAVRTLSNAE 205
Score = 158 bits (403), Expect = 2e-44
Identities = 32/261 (12%), Positives = 66/261 (25%), Gaps = 44/261 (16%)
Query: 10 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 69
+SK K G + A + + + + G
Sbjct: 1 MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT-- 58
Query: 70 CDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAA 129
L ++ ++ LH AA G R + D+ ++ L T L+ A
Sbjct: 59 ---GLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECL-DNRVGVNGLDKAGSTALYWAC 114
Query: 130 EAGQLQVCKLLLD-LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDG 188
G + ++L ++ + G +H AA + ++ Q+ L +
Sbjct: 115 HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEK 173
Query: 189 NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 248
+A A++++ A
Sbjct: 174 K------------------------------------LAFDMATNAACASLLKKKQGTDA 197
Query: 249 SCTDENKTGFTAVHLAAQNGH 269
T N + + H
Sbjct: 198 VRTLSNAEDYLDDEDSDLEHH 218
Score = 83.1 bits (206), Expect = 5e-18
Identities = 17/88 (19%), Positives = 33/88 (37%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
LN+Q +G T L A +G+ ++V +L AR D+ + E + A +A +
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKK 192
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYAD 101
A + + + +
Sbjct: 193 QGTDAVRTLSNAEDYLDDEDSDLEHHHH 220
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 178 bits (453), Expect = 1e-50
Identities = 52/307 (16%), Positives = 78/307 (25%), Gaps = 71/307 (23%)
Query: 257 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT 316
G + ++ G + G + +
Sbjct: 1 GEVNKIIGSRTAGE-------------------GAMEYLIEWKDGHSPSWVPSSYI---- 37
Query: 317 VKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLH 376
TP AA +E + LL VDA ENG L
Sbjct: 38 ------------AADVVSEYETPWWTAARKADEQALSQLL--EDRDVDAVD-ENGRTALL 82
Query: 377 LACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDK 436
G V LL ADL + G T LH+AA + ++VE L+ GA+I D+
Sbjct: 83 FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 142
Query: 437 GGARSIHTAARYGHVGIINTLLQKGEKV---DVTTNNLAC--GHVTVVGLLLSRAADLLQ 491
G ++ A +Q G ++ V + V ++
Sbjct: 143 RGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEK------- 195
Query: 492 SADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTAL 551
GK ++ V AE A D L
Sbjct: 196 --RGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDY-------------------EDGL 234
Query: 552 HLAAMNG 558
A
Sbjct: 235 EYAVAES 241
Score = 174 bits (443), Expect = 2e-49
Identities = 45/276 (16%), Positives = 79/276 (28%), Gaps = 42/276 (15%)
Query: 325 ASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHV 384
+G + G + G+ V + P A
Sbjct: 4 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSS-YIAADVVS----EYETPWWTAARKADE 58
Query: 385 TVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATD-KGGARSIH 443
+ LL + + D+NG+T L A G + V +L GA+++ D +GG ++H
Sbjct: 59 QALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 116
Query: 444 TAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHI 503
AA Y ++ L++ G ++V D+ G T L +
Sbjct: 117 MAAGYVRPEVVEALVELGADIEV--------------------------EDERGLTALEL 150
Query: 504 AATHGHLQMVEVLLGQGAEINATDKV-----CDALLTHKAFINSKSRVGRTALHLAAMNG 558
A + G I + I K G+ +L
Sbjct: 151 AREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKD 210
Query: 559 YADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 594
D H A + + + L A +
Sbjct: 211 GGDCEWVKG-VHVA--EDVAKDYEDGLEYAVAESVI 243
Score = 157 bits (399), Expect = 2e-43
Identities = 49/259 (18%), Positives = 80/259 (30%), Gaps = 29/259 (11%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
++ G LI GH A DV E + AA + LL
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DV-VSEYETPWWTAARKADEQALSQLL 65
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR-KQTPLHLAAEAGQ 133
+++ GRTAL A G R L + A +D +R T LH+AA +
Sbjct: 66 -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAGYVR 123
Query: 134 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTC 191
+V + L++LGA I+ D++G + +A + ++ L +
Sbjct: 124 PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL------EKVIN 177
Query: 192 AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCT 251
+ V E + K G L + V A
Sbjct: 178 VLEGQVFEYAEVDEIVEK-RGKGK----------DVEYLVRWKDGGDCEWVKGVHVA--- 223
Query: 252 DEN-KTGFTAVHLAAQNGH 269
++ K + A
Sbjct: 224 EDVAKDYEDGLEYAVAESV 242
Score = 134 bits (339), Expect = 2e-35
Identities = 43/344 (12%), Positives = 84/344 (24%), Gaps = 103/344 (29%)
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
+K + + G + +G++ + A V+ +TP AA
Sbjct: 3 VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTAARKADE 58
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI 194
Q LL+ +DA D+ G+ + A + ++
Sbjct: 59 QALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLA-------------------- 97
Query: 195 AAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN 254
G + R+ T L +AA VV LV+ GA E+
Sbjct: 98 -----EAGAD-----------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 141
Query: 255 KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVP 314
+ G TA+ LA + +
Sbjct: 142 ERGLTALELAREILKT---------------------------------TPKGNPMQF-- 166
Query: 315 GTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNP 374
G + + V ++ + G +
Sbjct: 167 ---------GRRI-----GLEKVINVLEGQVFEYAEVDEIVE----------KRGKGKDV 202
Query: 375 LHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHL 418
+L + + A+ + K+ + L A +
Sbjct: 203 EYLVRWKDGGDCEWVKGVHVAEDV---AKDYEDGLEYAVAESVI 243
Score = 125 bits (316), Expect = 2e-32
Identities = 43/205 (20%), Positives = 70/205 (34%), Gaps = 28/205 (13%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
TP A + + ++ +L VD D+ GR+AL A G K L A +
Sbjct: 45 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 103
Query: 81 NSK-SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 139
+ + R G TALH+AA ++ LV + A I++ R T L LA E +
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDERGLTALELAREILKTTPKGN 162
Query: 140 LLDLGASIDATDDQ----------------------GQKPIHVAAQNNFPEVAQIFLRAH 177
+ G I G+ ++ + + + H
Sbjct: 163 PMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKG-VH 221
Query: 178 PSLVTATTKDGNTCAHIAAMQGSVG 202
+ A KD A + +G
Sbjct: 222 VAEDVA--KDYEDGLEYAVAESVIG 244
Score = 123 bits (312), Expect = 8e-32
Identities = 43/228 (18%), Positives = 75/228 (32%), Gaps = 32/228 (14%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
GH AAD+ +T AA Q + LL + +++A D+
Sbjct: 25 DGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLL-EDRDVDAVDEN--- 76
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR-KQTPLHLAAEA 591
GRTAL A G R L + A +D +R T LH+AA
Sbjct: 77 --------------GRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAGY 121
Query: 592 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERA 651
+ +V + L++LGA I+ D++G + +A + ++ ++
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG-----RRIGLEKVI 176
Query: 652 KDLIAAGKHCEGMATELLALAAGADSAGRILTATDRRNIEFLDVLIEN 699
L + + G D + + V +
Sbjct: 177 NVLEGQVFEYAEVDEIVEKRGKGKD---VEYLVRWKDGGDCEWVKGVH 221
Score = 78.4 bits (194), Expect = 3e-16
Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 8/142 (5%)
Query: 535 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 594
+K + + G + +G++ + A V+ +TP AA
Sbjct: 3 VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTAARKADE 58
Query: 595 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL 654
Q LL+ +DA D+ G+ + A + ++ + +
Sbjct: 59 QALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALH 116
Query: 655 IAAGKHCEGMATELLALAAGAD 676
+AAG + E L + GAD
Sbjct: 117 MAAGYVRPEVV-EAL-VELGAD 136
Score = 48.0 bits (115), Expect = 5e-06
Identities = 7/88 (7%), Positives = 18/88 (20%), Gaps = 23/88 (26%)
Query: 547 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
G + + + + G + A
Sbjct: 1 GEVNKIIGSRTAG--------------------EGAMEYLIEWKDGHSPSWVPSSYIAAD 40
Query: 607 IDATDDQGQKPIHVAAQNNFPEVAQIFL 634
+ + + + P AA+ + L
Sbjct: 41 VVS---EYETPWWTAARKADEQALSQLL 65
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 174 bits (445), Expect = 1e-50
Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 28/193 (14%)
Query: 336 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA 395
+H A G + ++ L V+ E G+ PL A G + V LL A
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD-ERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 396 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIIN 455
D K ++ L +A+T G+ +V +LL + +IN D G + A R HV +
Sbjct: 61 D-PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119
Query: 456 TLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEV 515
LL +G + +G T + +A G+ ++ +V
Sbjct: 120 ALLARGADLTT--------------------------EADSGYTPMDLAVALGYRKVQQV 153
Query: 516 LLGQGAEINATDK 528
+ ++ ++
Sbjct: 154 IENHILKLFQSNL 166
Score = 163 bits (416), Expect = 1e-46
Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 15/181 (8%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
++H A G+ D ++E L G + + + E G TPL A+ G
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRK-----------GDNLVNK-PDERGFTPLIWASAFGEI 49
Query: 350 NVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
VR LL G + + L LA GG+ +VGLLL R D + D NG T L
Sbjct: 50 ETVRFLL-EWGADPHILA-KERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPL 106
Query: 410 HIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTN 469
A H++ VE LL +GA++ G + A G+ + + K+ +
Sbjct: 107 LYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNL 166
Query: 470 N 470
Sbjct: 167 V 167
Score = 161 bits (410), Expect = 8e-46
Identities = 43/214 (20%), Positives = 76/214 (35%), Gaps = 44/214 (20%)
Query: 371 GYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAE 430
+H G + + L + +L+ D+ G T L A+ G ++ V LL GA+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 431 INATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLL 490
+ K ++ A+ G+ I+ LL++ +++
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINI------------------------ 97
Query: 491 QSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTA 550
D NG T L A H++ VE LL +GA++ G T
Sbjct: 98 --YDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD-----------------SGYTP 138
Query: 551 LHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTP 584
+ LA GY + + + +H + L P
Sbjct: 139 MDLAVALGYRKVQQVIE-NHILKLFQSNLVPADP 171
Score = 159 bits (406), Expect = 3e-45
Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 257 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPG 315
++H A G L+E V + G T L A+ FG+ +TVR LL
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW--- 58
Query: 316 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPL 375
GA + ++ + L LA+ G ++V LLL V ++ NG PL
Sbjct: 59 --------GADP--HILAKERESALSLASTGGYTDIVGLLL-ERDVDINIYDW-NGGTPL 106
Query: 376 HLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATD 435
A G HV V LL+R AD L + +G T + +A G+ ++ +V+ ++ ++
Sbjct: 107 LYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165
Query: 436 KGG 438
Sbjct: 166 LVP 168
Score = 152 bits (387), Expect = 1e-42
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 3/171 (1%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHA-RVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAF 79
+ +G ++ + L V+ D+ G + L A+ G ++ LL A
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 139
+ ++ +AL LA+ GY D+ L+ + I+I TPL A ++ +
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLL-ERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 140 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT 190
LL GA + D G P+ +A + +V Q + H + +
Sbjct: 121 LLARGADLTTEADSGYTPMDLAVALGYRKVQQ-VIENHILKLFQSNLVPAD 170
Score = 143 bits (364), Expect = 1e-39
Identities = 46/198 (23%), Positives = 73/198 (36%), Gaps = 43/198 (21%)
Query: 437 GGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKN 496
G + SIH A G + + L+KG +L+ D+
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKG-------------------------DNLVNKPDER 35
Query: 497 GKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM 556
G T L A+ G ++ V LL GA+ + K +AL LA+
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKE-----------------RESALSLAST 78
Query: 557 NGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 616
GY D+ L+ + I+I TPL A ++ + LL GA + D G
Sbjct: 79 GGYTDIVGLLL-ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYT 137
Query: 617 PIHVAAQNNFPEVAQIFL 634
P+ +A + +V Q+
Sbjct: 138 PMDLAVALGYRKVQQVIE 155
Score = 129 bits (328), Expect = 8e-35
Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 1/143 (0%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
NK G+TPL+ A G +E V +L A + +E SAL LA+ GY + LL
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
IN G T L A + L+ A + TP+ LA G
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL-ARGADLTTEADSGYTPMDLAVALGYR 148
Query: 135 QVCKLLLDLGASIDATDDQGQKP 157
+V +++ + + ++ P
Sbjct: 149 KVQQVIENHILKLFQSNLVPADP 171
Score = 125 bits (318), Expect = 2e-33
Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 37/188 (19%)
Query: 87 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 146
++H A G D + + +++ R TPL A+ G+++ + LL+ GA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 147 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEE 206
+ + + +A+ + ++ + L + +G
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGG----------------- 103
Query: 207 LMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 266
TPL A G H V L+ GA T E +G+T + LA
Sbjct: 104 -------------------TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA 144
Query: 267 NGHNQVLE 274
G+ +V +
Sbjct: 145 LGYRKVQQ 152
Score = 75.9 bits (188), Expect = 5e-16
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 8 TEISKAL-------NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHL 60
T+I L N G TPLL A H++ V +L A + G + + L
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDL 141
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRT 89
A GY KV + H + + V
Sbjct: 142 AVALGYRKVQQVIENHILKLFQSNLVPAD 170
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 174 bits (445), Expect = 2e-50
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 28/196 (14%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
GS M + GN VRL L++ ++ ++G++PLH AC G VV +L+
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD-DHGFSPLHWACREGRSAVVEMLI 59
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
R A + ++ T LH+AA+HGH +V+ LL A+INA ++ G +H A +G
Sbjct: 60 MRGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118
Query: 452 GIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 511
+ L+ G V + +K G+ + A
Sbjct: 119 QVAEDLVANGALVSI--------------------------CNKYGEMPVDKAKAPLREL 152
Query: 512 MVEVLLGQGAEINATD 527
+ E G +N
Sbjct: 153 LRERAEKMGQNLNRIP 168
Score = 168 bits (429), Expect = 3e-48
Identities = 41/225 (18%), Positives = 76/225 (33%), Gaps = 51/225 (22%)
Query: 401 ADKNGKTCLHIAATHGHLQMVEVLLGQGA-EINATDKGGARSIHTAARYGHVGIINTLLQ 459
+ G+ V + L ++N D G +H A R G ++ L+
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 460 KGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQ 519
+G +++V ++ T LH+AA+HGH +V+ LL
Sbjct: 61 RGARINVM--------------------------NRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 520 GAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTL 579
A+INA ++ G LH A G + LV + A++ I
Sbjct: 95 KADINAVNE-----------------HGNVPLHYACFWGQDQVAEDLV-ANGALVSICNK 136
Query: 580 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 624
+ P+ A + + + +G +++ P
Sbjct: 137 YGEMPVDKAKAPLRELLRERAEKMGQNLNRI------PYKDTFWK 175
Score = 165 bits (420), Expect = 4e-47
Identities = 45/227 (19%), Positives = 75/227 (33%), Gaps = 50/227 (22%)
Query: 369 ENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 428
+ + C G+ V L L + L D +G + LH A G +VE+L+ +G
Sbjct: 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62
Query: 429 AEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAAD 488
A IN ++G +H AA +GH I+ LLQ ++
Sbjct: 63 ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV--------------------- 101
Query: 489 LLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGR 548
+++G LH A G Q+ E L+ GA ++ +K G
Sbjct: 102 -----NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK-----------------YGE 139
Query: 549 TALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQ 595
+ A L ++ + P G +
Sbjct: 140 MPVDKAKAPLRELLRERAE-KMGQNLN------RIPYKDTFWKGTTR 179
Score = 146 bits (371), Expect = 2e-40
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 2/155 (1%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHAR-VDVFDQEGRSALHLAAEHGYLKVCDALLTHKAF 79
+ C G+ V L+N ++ D G S LH A G V + L+ A
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 139
IN +R T LHLAA +G+ D+ + L+ + A I+ + PLH A GQ QV +
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLL-QYKADINAVNEHGNVPLHYACFWGQDQVAED 123
Query: 140 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 174
L+ GA + + G+ P+ A + +
Sbjct: 124 LVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158
Score = 136 bits (344), Expect = 6e-37
Identities = 42/222 (18%), Positives = 70/222 (31%), Gaps = 45/222 (20%)
Query: 51 DQEGRSALHLAAEHGYLKVCDALLTHKAF-INSKSRVGRTALHLAAMNGYADLCRFLVHD 109
E + G L + +N G + LH A G + + L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-M 60
Query: 110 HAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEV 169
A I+++ TPLHLAA G + + LL A I+A ++ G P+H A +V
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 120
Query: 170 AQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQ 229
A+ + A+ +LV+ K G P+
Sbjct: 121 AEDLV-ANGALVSICNKYGE------------------------------------MPVD 143
Query: 230 LAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
A + K G + N+ + G +
Sbjct: 144 KAKAPLRELLRERAEKMGQ---NLNRIPY---KDTFWKGTTR 179
Score = 131 bits (331), Expect = 4e-35
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 7/151 (4%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
LN+ G++PL AC G +V ++ AR++V ++ + LHLAA HG+ + L
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L +KA IN+ + G LH A G + LV + A++ I + P+ A +
Sbjct: 92 LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGEMPVDKAKAPLR 150
Query: 134 LQVCKLLLDLGASIDATDDQGQKPIHVAAQN 164
+ + +G +++ P
Sbjct: 151 ELLRERAEKMGQNLNRI------PYKDTFWK 175
Score = 115 bits (291), Expect = 9e-30
Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 59/234 (25%)
Query: 151 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 210
+ I + +++L + + G
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF--------------------- 40
Query: 211 DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN 270
+PL A G + VV +L+ GA N+ T +HLAA +GH
Sbjct: 41 ---------------SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHR 85
Query: 271 QVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLG 329
+++++ KA ++ + + G LH A ++GQ +L+++ GA
Sbjct: 86 DIVQKLLQYKA-DINAVNEHGNVPLHYACFWGQDQVAEDLVAN-----------GALV-- 131
Query: 330 ELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGH 383
+ ++ G P+ A E + G ++ P + G
Sbjct: 132 SICNKYGEMPVDKAKAPLRELLRERAE-KMGQNLNR-------IPYKDTFWKGT 177
Score = 88.6 bits (221), Expect = 2e-20
Identities = 19/88 (21%), Positives = 36/88 (40%)
Query: 547 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
+ G A R + + ++ +PLH A G+ V ++L+ GA
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64
Query: 607 IDATDDQGQKPIHVAAQNNFPEVAQIFL 634
I+ + P+H+AA + ++ Q L
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLL 92
Score = 33.6 bits (78), Expect = 0.17
Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 5/67 (7%)
Query: 611 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL-IAAGKHCEGMATELL 669
+ I + +++L + + L A + + E+L
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSP--LHWACREGRSAVV-EML 58
Query: 670 ALAAGAD 676
+ GA
Sbjct: 59 -IMRGAR 64
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 176 bits (448), Expect = 4e-50
Identities = 55/293 (18%), Positives = 94/293 (32%), Gaps = 77/293 (26%)
Query: 336 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA 395
+PL LAA + + LL G +V + G LH+A ++ +L+ A
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRG-AMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 396 DLLQ----SADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
+L+ S G+T LHIA + ++ +V LL +GA ++A G
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRP------- 114
Query: 452 GIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 511
+ G+ L AA G +
Sbjct: 115 ---------------------------------------HNLIYYGEHPLSFAACVGSEE 135
Query: 512 MVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVH--- 568
+V +L+ GA+I A D + G T LH+ + + +
Sbjct: 136 IVRLLIEHGADIRAQDSL-----------------GNTVLHILILQPNKTFACQMYNLLL 178
Query: 569 DHAAVIDILTLRK------QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 615
+ + +L TP LA G + + + L+ I A
Sbjct: 179 SYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 165 bits (419), Expect = 2e-46
Identities = 52/262 (19%), Positives = 84/262 (32%), Gaps = 57/262 (21%)
Query: 289 LGVTALHVAAYFGQADTVRELL-SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 347
+ + L +AA + +LL G G T LH+AA
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFE-----------GCEV--HQRGAMGETALHIAALYD 48
Query: 348 NENVVRLLLNSAGVQVDAQTQ----ENGYNPLHLACFGGHVTVVGLLLSRAAD------- 396
N +L+ A ++ + G LH+A +V +V LL+R A
Sbjct: 49 NLEAAMVLM-EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATG 107
Query: 397 -----LLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
+ G+ L AA G ++V +L+ GA+I A D G +H +
Sbjct: 108 SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNK 167
Query: 452 GIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAAD-----LLQSADKNGKTCLHIAAT 506
+ LLLS L + G T +A
Sbjct: 168 TFACQMYN---------------------LLLSYDGGDHLKSLELVPNNQGLTPFKLAGV 206
Query: 507 HGHLQMVEVLLGQGAEINATDK 528
G++ M + L+ + I A
Sbjct: 207 EGNIVMFQHLMQKRKHIAAAHH 228
Score = 154 bits (391), Expect = 1e-42
Identities = 54/229 (23%), Positives = 85/229 (37%), Gaps = 19/229 (8%)
Query: 226 TPLQLAAEGGHANVV-RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 284
+PL LAA+ + ++L G G TA+H+AA + + + + +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP-EL 63
Query: 285 YSK------KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMT 338
+ G TALH+A + VR LL+ + + G
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 339 PLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVG----LLLSRA 394
PL AA G+E +VRLL+ G + AQ G LH+ + T LLLS
Sbjct: 124 PLSFAACVGSEEIVRLLI-EHGADIRAQD-SLGNTVLHILILQPNKTFACQMYNLLLSYD 181
Query: 395 AD-----LLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGG 438
L + G T +A G++ M + L+ + I A
Sbjct: 182 GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHH 230
Score = 141 bits (358), Expect = 4e-38
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 29/217 (13%)
Query: 20 IGWTPLLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKA 78
I +PLL+A ++ ++ +L V G +ALH+AA + L+ L+
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 79 FI-----NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDI-------------LTLR 120
+ S+ G+TALH+A +N +L R L+ A + L
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALL-ARGASVSARATGSVFHYRPHNLIYY 120
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQI---FLRAH 177
+ PL AA G ++ +LL++ GA I A D G +H+ A L ++
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY 180
Query: 178 ------PSLVTATTKDGNTCAHIAAMQGSVGVIEELM 208
SL G T +A ++G++ + + LM
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217
Score = 138 bits (350), Expect = 5e-37
Identities = 49/281 (17%), Positives = 90/281 (32%), Gaps = 70/281 (24%)
Query: 405 GKTCLHIAATHGHLQMV-EVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEK 463
++ L +AA +Q + ++L +G E++ G ++H AA Y ++ L++ +
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 464 VDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEI 523
+ S G+T LHIA + ++ +V LL +GA +
Sbjct: 63 LVFEPMT---------------------SELYEGQTALHIAVINQNVNLVRALLARGASV 101
Query: 524 NATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQT 583
+A V H G +
Sbjct: 102 SARAT---------------GSVFHYRPHNLIYYG-----------------------EH 123
Query: 584 PLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQI---FLRAHPSL 640
PL AA G ++ +LL++ GA I A D G +H+ A L ++
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183
Query: 641 VTATTKEKERAKD----L-IAAGKHCEGMATELLALAAGAD 676
+ E +A + M + L +
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAGVEGNIVMF-QHL-MQKRKH 222
Score = 106 bits (267), Expect = 5e-26
Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 22/168 (13%)
Query: 10 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFD-------------QEGRS 56
+ + + + G T L IA ++ LV +L A V G
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 57 ALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVH---DHAAV 113
L AA G ++ L+ H A I ++ +G T LH+ + + + +
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183
Query: 114 IDILTLRK------QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 155
+ +L TP LA G + + + L+ I A
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 78.4 bits (194), Expect = 3e-16
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 11/120 (9%)
Query: 7 GTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGY 66
G+ + G PL A G E+V ++ + A + D G + LH+
Sbjct: 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN 166
Query: 67 LKVCDA----LLTHKAFINSKSRV------GRTALHLAAMNGYADLCRFLVHDHAAVIDI 116
LL++ + KS G T LA + G + + L+ I
Sbjct: 167 KTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM-QKRKHIAA 225
Score = 73.8 bits (182), Expect = 9e-15
Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 20/148 (13%)
Query: 546 VGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 605
+ + L LAA L+ + +T LH+AA L+ +L++
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 606 SI-----DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL------ 654
+ + +GQ +H+A N + + L A + V+A
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALL-ARGASVSARATGSVFHYRPHNLIYY 120
Query: 655 ------IAAGKHCEGMATELLALAAGAD 676
AA E + LL + GAD
Sbjct: 121 GEHPLSFAACVGSEEIV-RLL-IEHGAD 146
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 172 bits (438), Expect = 8e-49
Identities = 40/264 (15%), Positives = 75/264 (28%), Gaps = 54/264 (20%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
+G L + + + G++V L + G +V ++
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERI-AHGMRVKFN--PLPLALLLDSSLEGEFDLVQRIIYE 59
Query: 394 AADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGI 453
D + G T LH A GH ++V+ L+ G +NA D G +H AA +V +
Sbjct: 60 VDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Query: 454 INTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMV 513
L++ G V T + D G+ Q
Sbjct: 119 CKFLVESGAAVFAMTYS-----------------------DMQTAADKCEEMEEGYTQCS 155
Query: 514 EVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV 573
+ L G ++ +K AL +L + +
Sbjct: 156 QFLYGVQEKMGIMNK-----------------GVIYALWDYEPQNDDEL---PMKEGD-- 193
Query: 574 IDILTLRK----QTPLHLAAEAGQ 593
+ + + + A +
Sbjct: 194 -CMTIIHREDEDEIEWWWARLNDK 216
Score = 168 bits (428), Expect = 2e-47
Identities = 36/232 (15%), Positives = 68/232 (29%), Gaps = 48/232 (20%)
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
+ G+ L + + G + A + ++ G ++ ++ +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLA-LLLDSSLEGEFDLVQRIIYEV 60
Query: 462 EKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
+ + G T LH A GH ++V+ L+ G
Sbjct: 61 DDPS--------------------------LPNDEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 522 EINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTL-- 579
+NA D G T LH AA +C+FLV + A + +T
Sbjct: 95 NVNAADS-----------------DGWTPLHCAASCNNVQVCKFLV-ESGAAVFAMTYSD 136
Query: 580 -RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 630
+ E G Q + L + + + + N E+
Sbjct: 137 MQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELP 188
Score = 145 bits (368), Expect = 2e-39
Identities = 39/219 (17%), Positives = 73/219 (33%), Gaps = 10/219 (4%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G L + + + + RV F+ + L ++ G + ++
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
+ + G TALH A G+ ++ +FLV ++ TPLH AA +QVCK L
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 141 LDLGASIDATDDQGQK---PIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAM 197
++ GA++ A + + + + +Q FL + K
Sbjct: 123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ-FLYGVQEKMGIMNKGVIYALWDYEP 181
Query: 198 QGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGH 236
Q +EL + + + A
Sbjct: 182 QND----DELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216
Score = 140 bits (354), Expect = 1e-37
Identities = 38/249 (15%), Positives = 74/249 (29%), Gaps = 39/249 (15%)
Query: 51 DQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDH 110
+ G+ +L K + H + + L +++ G DL + ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRII-YE 59
Query: 111 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 170
+ T LH A AG ++ K L+ G +++A D G P+H AA N +V
Sbjct: 60 VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC 119
Query: 171 QIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQL 230
+ + + ++ T D T A
Sbjct: 120 KFLVESGAAVFAMTYSDMQT----------------------------------AADKCE 145
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KL 289
E G+ + L NK A+ +++ M+ + + +
Sbjct: 146 EMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELP--MKEGDCMTIIHREDE 203
Query: 290 GVTALHVAA 298
A
Sbjct: 204 DEIEWWWAR 212
Score = 133 bits (338), Expect = 2e-35
Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 6/192 (3%)
Query: 16 KQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLT 75
K + LL + G +LV ++ + + EG +ALH A G+ ++ L+
Sbjct: 32 KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91
Query: 76 HKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTL---RKQTPLHLAAEAG 132
+N+ G T LH AA +C+FLV + A + +T + E G
Sbjct: 92 FGVNVNAADSDGWTPLHCAASCNNVQVCKFLV-ESGAAVFAMTYSDMQTAADKCEEMEEG 150
Query: 133 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 192
Q + L + + + + N E+ + +
Sbjct: 151 YTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELP--MKEGDCMTIIHREDEDEIEW 208
Query: 193 HIAAMQGSVGVI 204
A + G +
Sbjct: 209 WWARLNDKEGYV 220
Score = 126 bits (319), Expect = 7e-33
Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 20/183 (10%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
+ G+ L + + G + L
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL------------------PLALLLD 43
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 613
+++ G DL + ++ + T LH A AG ++ K L+ G +++A D
Sbjct: 44 SSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 614 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIAAGKHCEGMATELLALAA 673
G P+H AA N +V + + + ++ T + + A D + ++ L
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL-YGV 161
Query: 674 GAD 676
Sbjct: 162 QEK 164
Score = 119 bits (301), Expect = 2e-30
Identities = 28/266 (10%), Positives = 65/266 (24%), Gaps = 59/266 (22%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
Q L + + G + + ++ ++ Q +
Sbjct: 6 QVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRII-YEVDDP 63
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
+ +G T L A GH +V+
Sbjct: 64 SLPNDEGI------------------------------------TALHNAVCAGHTEIVK 87
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK----KLGVTALHVA 297
LV+ G + + G+T +H AA + QV + + S A V++
Sbjct: 88 FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA-AVFAMTYSDMQTAADKCEE 146
Query: 298 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 357
G + L + ++ + L ++ + +
Sbjct: 147 MEEGYTQCSQFLYGV-----------QEKM--GIMNKGVIYALWDYEPQNDDEL--PMKE 191
Query: 358 SAGVQVDAQTQENGYNPLHLACFGGH 383
+ + + ++ A
Sbjct: 192 GDCMTIIHR-EDEDEIEWWWARLNDK 216
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 167 bits (426), Expect = 1e-47
Identities = 48/266 (18%), Positives = 81/266 (30%), Gaps = 71/266 (26%)
Query: 369 ENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 428
L A V +L + D G T L+IA + +++ + L+ +G
Sbjct: 4 YEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 429 AEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAAD 488
A+IN + A G I + +L A
Sbjct: 63 ADINLQNSISDSPYLYAGAQGRTEI-------------------------LAYMLKHATP 97
Query: 489 LLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGR 548
L ++ G L AA GH+ V++LL G + I+ ++ G
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG----------------REDIDFQNDFGY 141
Query: 549 TALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 608
TAL A + KLL++ GA
Sbjct: 142 TALIEAVGLR-----------------------------EGNQLYQDIVKLLMENGADQS 172
Query: 609 ATDDQGQKPIHVAAQNNFPEVAQIFL 634
D+ G+ + A Q + E+++I
Sbjct: 173 IKDNSGRTAMDYANQKGYTEISKILA 198
Score = 155 bits (395), Expect = 2e-43
Identities = 44/213 (20%), Positives = 76/213 (35%), Gaps = 23/213 (10%)
Query: 254 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 312
+ A Q +V E ++ + V G T L++A + + + L+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTY-QVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 313 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGY 372
GA L + +P A G ++ +L A ++ G
Sbjct: 62 -----------GADI--NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN-RYGG 107
Query: 373 NPLHLACFGGHVTVVGLLLSR-AADLLQSADKNGKTCLHIAAT-----HGHLQMVEVLLG 426
N L A GH+ V LLL D+ + G T L A + +V++L+
Sbjct: 108 NALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166
Query: 427 QGAEINATDKGGARSIHTAARYGHVGIINTLLQ 459
GA+ + D G ++ A + G+ I L Q
Sbjct: 167 NGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 142 bits (362), Expect = 6e-39
Identities = 36/225 (16%), Positives = 79/225 (35%), Gaps = 33/225 (14%)
Query: 51 DQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDH 110
E + L A + KV + L ++ G T L++A N ++ + L+ D
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI-DR 61
Query: 111 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS-IDATDDQGQKPIHVAAQNNFPEV 169
A I++ +P A G+ ++ +L ++ + G + AA+ +
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDN 121
Query: 170 AQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQ 229
++ L + G T A
Sbjct: 122 VKLLLEDGREDIDFQNDFGYTALIEAVGLRE----------------------------- 152
Query: 230 LAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 274
+ ++V++L++ GA + ++ +G TA+ A Q G+ ++ +
Sbjct: 153 --GNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISK 195
Score = 141 bits (357), Expect = 2e-38
Identities = 40/198 (20%), Positives = 81/198 (40%), Gaps = 9/198 (4%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
L A R ++ + + +VD D EG + L++A + +++ AL+ A I
Sbjct: 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV-IDILTLRKQTPLHLAAEAGQLQVCKL 139
N ++ + + A G ++ +++ HA ++ L AAE G + KL
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEILAYML-KHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124
Query: 140 LLDLG-ASIDATDDQGQKPIHVAA-----QNNFPEVAQIFLRAHPSLVTATTKDGNTCAH 193
LL+ G ID +D G + A + ++ + L + + + G T
Sbjct: 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK-LLMENGADQSIKDNSGRTAMD 183
Query: 194 IAAMQGSVGVIEELMKFD 211
A +G + + L +++
Sbjct: 184 YANQKGYTEISKILAQYN 201
Score = 133 bits (337), Expect = 1e-35
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 6/166 (3%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
++ + G TPL IA + +E+ +++ A +++ + S A G ++ +L
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML 92
Query: 75 THKAF-INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAA---- 129
H +N +R G AL AA G+ D + L+ D ID T L A
Sbjct: 93 KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE 152
Query: 130 -EAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 174
+ KLL++ GA D+ G+ + A Q + E+++I
Sbjct: 153 GNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 131 bits (331), Expect = 7e-35
Identities = 45/243 (18%), Positives = 77/243 (31%), Gaps = 49/243 (20%)
Query: 185 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVL 243
T + A + + V E L + + + TPL +A + + L
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQD---TTYQVDEVDT-EGNTPLNIAVHNNDIEIAKAL 58
Query: 244 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQ 302
+ GA +N + A G ++L M ++ + G AL AA G
Sbjct: 59 IDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118
Query: 303 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ 362
D V+ LL G D + ++ G T L A N
Sbjct: 119 IDNVKLLLED--GRE--DI--------DFQNDFGYTALIEAVGLREGN------------ 154
Query: 363 VDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVE 422
+ +V LL+ AD D +G+T + A G+ ++ +
Sbjct: 155 ------------------QLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISK 195
Query: 423 VLL 425
+L
Sbjct: 196 ILA 198
Score = 120 bits (304), Expect = 3e-31
Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 24/164 (14%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDK----------------VCDALLTHK 537
L A ++ E+L +++ D + AL+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 538 AFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV-IDILTLRKQTPLHLAAEAGQLQV 596
A IN ++ + + A G ++ +++ HA ++ L AAE G +
Sbjct: 63 ADINLQNSISDSPYLYAGAQGRTEILAYML-KHATPDLNKHNRYGGNALIPAAEKGHIDN 121
Query: 597 CKLLLDLG-ASIDATDDQGQKPIHVAA-----QNNFPEVAQIFL 634
KLLL+ G ID +D G + A + ++ ++ +
Sbjct: 122 VKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165
Score = 85.6 bits (213), Expect = 5e-19
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 1/92 (1%)
Query: 543 KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 602
K+ L A + L D +D + TPL++A +++ K L+D
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQ-DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 603 LGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
GA I+ + P A E+ L
Sbjct: 61 RGADINLQNSISDSPYLYAGAQGRTEILAYML 92
Score = 81.3 bits (202), Expect = 1e-17
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNN-HARVDVFDQEGRSALHLAA-----EHGYL 67
LNK G L+ A +GH++ V +L + +D + G +AL A Y
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 68 KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV-HD 109
+ L+ + A + K GRTA+ A GY ++ + L ++
Sbjct: 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 166 bits (421), Expect = 1e-46
Identities = 72/277 (25%), Positives = 104/277 (37%), Gaps = 49/277 (17%)
Query: 332 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
G S + +LA + + +L + ++ LH AC GH +V LL
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERIL-ADKSLATRTD-QDSRTALHWACSAGHTEIVEFLL 60
Query: 392 SRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHV 451
+ D G + LHIAA+ G ++V+ LL +GA +NA ++ G +H AA
Sbjct: 61 QLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119
Query: 452 GIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 511
I LL+ G D + D T +H AA G+L+
Sbjct: 120 EIAVMLLEGGANPD--------------------------AKDHYDATAMHRAAAKGNLK 153
Query: 512 MVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHA 571
MV +LL A N D G T LHLA + +FLV
Sbjct: 154 MVHILLFYKASTNIQDT-----------------EGNTPLHLACDEERVEEAKFLV-TQG 195
Query: 572 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 608
A I I ++TPL +A G L + L G
Sbjct: 196 ASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEAS 230
Score = 151 bits (384), Expect = 9e-42
Identities = 66/272 (24%), Positives = 104/272 (38%), Gaps = 46/272 (16%)
Query: 254 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 312
+ +LA +++ E + + K+ + TALH A G + V LL
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQL 62
Query: 313 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGY 372
G ++G +PLH+AA +G + +V+ LL G V+A +NG
Sbjct: 63 -----------GVPV--NDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVN-QNGC 107
Query: 373 NPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 432
PLH A + +LL A+ + D T +H AA G+L+MV +LL A N
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166
Query: 433 ATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQS 492
D G +H A V L+ +G +
Sbjct: 167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIY--------------------------I 200
Query: 493 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 524
+K KT L +A G L ++ L +G E +
Sbjct: 201 ENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230
Score = 150 bits (381), Expect = 3e-41
Identities = 59/228 (25%), Positives = 102/228 (44%), Gaps = 7/228 (3%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
+A + EL +L + + DQ+ R+ALH A G+ ++ + LL +
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
N K G + LH+AA G ++ + L+ A ++ + TPLH AA + ++ +L
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 141 LDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS 200
L+ GA+ DA D +H AA ++ I L + + +GNT H+A +
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL-FYKASTNIQDTEGNTPLHLACDEER 184
Query: 201 VGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 248
V + L+ + I N+ E TPLQ+A G ++ + G
Sbjct: 185 VEEAKFLV--TQGASIYIENK-EEKTPLQVAK--GGLGLILKRLAEGE 227
Score = 136 bits (343), Expect = 3e-36
Identities = 63/279 (22%), Positives = 100/279 (35%), Gaps = 55/279 (19%)
Query: 154 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 213
++A E+ + L A SL T T +D T
Sbjct: 7 NIMICNLAYSGKLDELKERIL-ADKSLATRTDQDSRT----------------------- 42
Query: 214 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL 273
L A GH +V L++ G D++ G++ +H+AA G ++++
Sbjct: 43 -------------ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIV 89
Query: 274 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGS 333
+ + A + G T LH AA + + LL D
Sbjct: 90 KALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD------------- 136
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
T +H AA GN +V +LL + Q G PLHLAC V L+++
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILL-FYKASTNIQD-TEGNTPLHLACDEERVEEAKFLVTQ 194
Query: 394 AADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEIN 432
A + +K KT L +A G L ++ L +G E +
Sbjct: 195 GAS-IYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230
Score = 133 bits (336), Expect = 3e-35
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 4/193 (2%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ T L AC+ GH E+V +L V+ D G S LH+AA G ++ ALL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
A +N+ ++ G T LH AA ++ L+ + A D T +H AA G L
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 135 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI 194
++ +LL AS + D +G P+H+A E A+ + + + K+ T +
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQGASIYIENKEEKTPLQV 211
Query: 195 AAMQGSVGVIEEL 207
A G +G+I +
Sbjct: 212 AK--GGLGLILKR 222
Score = 94.9 bits (236), Expect = 5e-22
Identities = 43/135 (31%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N G TPL A ++ E+ +L A D D +A+H AA G LK+ L
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L +KA N + G T LHLA + +FLV A I I ++TPL +A G
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQGASIYIENKEEKTPLQVA--KGG 215
Query: 134 LQVCKLLLDLGASID 148
L + L G
Sbjct: 216 LGLILKRLAEGEEAS 230
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 163 bits (415), Expect = 3e-46
Identities = 46/235 (19%), Positives = 80/235 (34%), Gaps = 52/235 (22%)
Query: 333 SESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLS 392
++G + + L N PL +AC G + L+
Sbjct: 5 DKNGEIVEKIKDEKSINQNLDFLRNY--------RDSYNRTPLMVACMLGMENAIDKLVE 56
Query: 393 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVG 452
L + D G T L A + L + E LL +G+ +N D G + + +G+
Sbjct: 57 NFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE 115
Query: 453 IINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQM 512
+ LL+ G V+ + G+T L +A+ +G ++
Sbjct: 116 MSYFLLEHGANVNDR--------------------------NLEGETPLIVASKYGRSEI 149
Query: 513 VEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV 567
V+ LL GA+I+A D G TA A + G ++ +
Sbjct: 150 VKKLLELGADISARDL-----------------TGLTAEASARIFGRQEVIKIFT 187
Score = 156 bits (398), Expect = 6e-44
Identities = 56/235 (23%), Positives = 90/235 (38%), Gaps = 50/235 (21%)
Query: 400 SADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQ 459
DKNG+ I Q ++ L N D + A G I+ L++
Sbjct: 3 HMDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVE 56
Query: 460 KGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQ 519
+K++ D G T L A + L + E LL +
Sbjct: 57 NFDKLEDK--------------------------DIEGSTALIWAVKNNRLGIAEKLLSK 90
Query: 520 GAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTL 579
G+ +N D G+T L + + GY+++ FL+ +H A ++ L
Sbjct: 91 GSNVNTKDFS-----------------GKTPLMWSIIFGYSEMSYFLL-EHGANVNDRNL 132
Query: 580 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
+TPL +A++ G+ ++ K LL+LGA I A D G A EV +IF
Sbjct: 133 EGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 156 bits (396), Expect = 1e-43
Identities = 44/239 (18%), Positives = 87/239 (36%), Gaps = 53/239 (22%)
Query: 369 ENGYNPLHLACFGGHVTVVGLLLSRAADLLQSA-DKNGKTCLHIAATHGHLQMVEVLLGQ 427
+NG + ++ D L++ D +T L +A G ++ L+
Sbjct: 6 KNGEIVEKIKDEKSI--------NQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVEN 57
Query: 428 GAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAA 487
++ D G+ ++ A + +GI LLS+ +
Sbjct: 58 FDKLEDKDIEGSTALIWAVKNNRLGI-------------------------AEKLLSKGS 92
Query: 488 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVG 547
++ + D +GKT L + G+ +M LL GA +N + G
Sbjct: 93 NV-NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE-----------------G 134
Query: 548 RTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
T L +A+ G +++ + L+ + A I L T A G+ +V K+ ++ +
Sbjct: 135 ETPLIVASKYGRSEIVKKLL-ELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRRA 192
Score = 154 bits (392), Expect = 4e-43
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 22/205 (10%)
Query: 254 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 313
+K G + + NQ L+ +R+ + T L VA G + + +L+ +
Sbjct: 5 DKNGEIVEKIKDEKSINQNLDFLRNYRD------SYNRTPLMVACMLGMENAIDKLVEN- 57
Query: 314 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYN 373
E G T L A + + LL S G V+ + +G
Sbjct: 58 ----------FDKL--EDKDIEGSTALIWAVKNNRLGIAEKLL-SKGSNVNTKD-FSGKT 103
Query: 374 PLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINA 433
PL + G+ + LL A+ + + G+T L +A+ +G ++V+ LL GA+I+A
Sbjct: 104 PLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA 162
Query: 434 TDKGGARSIHTAARYGHVGIINTLL 458
D G + +A +G +I
Sbjct: 163 RDLTGLTAEASARIFGRQEVIKIFT 187
Score = 140 bits (356), Expect = 3e-38
Identities = 50/161 (31%), Positives = 88/161 (54%), Gaps = 1/161 (0%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
N + S TPL++AC G ++ ++ N +++ D EG +AL A ++ L + + L
Sbjct: 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
L+ + +N+K G+T L + + GY+++ FL+ +H A ++ L +TPL +A++ G+
Sbjct: 88 LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL-EHGANVNDRNLEGETPLIVASKYGR 146
Query: 134 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 174
++ K LL+LGA I A D G A EV +IF
Sbjct: 147 SEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 130 bits (330), Expect = 7e-35
Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 44/224 (19%)
Query: 51 DQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDH 110
D+ G + E + D L N + RT L +A M G + LV ++
Sbjct: 5 DKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV-EN 57
Query: 111 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 170
++ + T L A + +L + + LL G++++ D G+ P+ + + E++
Sbjct: 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117
Query: 171 QIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQL 230
L H + V +G TPL +
Sbjct: 118 YFLL-EHGANVNDRNLEGE------------------------------------TPLIV 140
Query: 231 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 274
A++ G + +V+ L++ GA + + TG TA A G +V++
Sbjct: 141 ASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184
Score = 126 bits (319), Expect = 2e-33
Identities = 39/237 (16%), Positives = 83/237 (35%), Gaps = 54/237 (22%)
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRK----QTPLHLAAEAGQLQV 136
+ + G + +D L + +TPL +A G
Sbjct: 2 SHMDKNGEIVEKIKDEKS-----------INQNLDFLRNYRDSYNRTPLMVACMLGMENA 50
Query: 137 CKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAA 196
L++ ++ D +G + A +NN +A+ L + S V G
Sbjct: 51 IDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL-SKGSNVNTKDFSGK------- 102
Query: 197 MQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKT 256
TPL + G++ + L++ GA+ D N
Sbjct: 103 -----------------------------TPLMWSIIFGYSEMSYFLLEHGANVNDRNLE 133
Query: 257 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 312
G T + +A++ G +++++++ A ++ ++ G+TA A FG+ + ++
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGA-DISARDLTGLTAEASARIFGRQEVIKIFTEV 189
Score = 124 bits (313), Expect = 1e-32
Identities = 48/240 (20%), Positives = 77/240 (32%), Gaps = 58/240 (24%)
Query: 186 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 245
K+G I + ++ L + R+ TPL +A G N + LV+
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFL--------RNYRDS-YNRTPLMVACMLGMENAIDKLVE 56
Query: 246 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADT 305
D++ G TA+ A +N
Sbjct: 57 NFDKLEDKDIEGSTALIWAVKNNRL---------------------------------GI 83
Query: 306 VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDA 365
+LLS G++ SG TPL + G + LL G V+
Sbjct: 84 AEKLLSK-----------GSNV--NTKDFSGKTPLMWSIIFGYSEMSYFLL-EHGANVND 129
Query: 366 QTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 425
+ G PL +A G +V LL AD + + D G T A G +++++
Sbjct: 130 RN-LEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 76.7 bits (190), Expect = 5e-16
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 15/98 (15%)
Query: 541 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRK----QTPLHLAAEAGQLQV 596
+ + G + +D L + +TPL +A G
Sbjct: 2 SHMDKNGEIVEKIKDEKS-----------INQNLDFLRNYRDSYNRTPLMVACMLGMENA 50
Query: 597 CKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
L++ ++ D +G + A +NN +A+ L
Sbjct: 51 IDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Score = 56.6 bits (138), Expect = 3e-09
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N + G TPL++A G E+V +L A + D G +A A G +V
Sbjct: 128 NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Query: 75 THKA 78
+
Sbjct: 188 EVRR 191
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 154 bits (393), Expect = 2e-43
Identities = 67/211 (31%), Positives = 95/211 (45%), Gaps = 45/211 (21%)
Query: 360 GVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQ 419
G + L A G V +L++ AD + + D +G T LH+AA +GHL+
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLE 61
Query: 420 MVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVV 479
+VEVLL GA++NA D G + AA +GH+ I+ LL+ G V+
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA------------- 108
Query: 480 GLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAF 539
D G T LH+AA GHL++VEVLL GA++NA DK
Sbjct: 109 -------------NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK----------- 144
Query: 540 INSKSRVGRTALHLAAMNGYADLCRFLV-HD 569
G+TA ++ NG DL L +
Sbjct: 145 ------FGKTAFDISIDNGNEDLAEILQKLN 169
Score = 154 bits (392), Expect = 2e-43
Identities = 56/209 (26%), Positives = 87/209 (41%), Gaps = 44/209 (21%)
Query: 393 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVG 452
R + + L AA G V +L+ GA++NA D G +H AA GH+
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 453 IINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQM 512
I+ LL+ G V+ + D G T L +AA GHL++
Sbjct: 62 IVEVLLKNGADVN--------------------------AVDHAGMTPLRLAALFGHLEI 95
Query: 513 VEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAA 572
VEVLL GA++NA D G T LHLAAM G+ ++ L+ + A
Sbjct: 96 VEVLLKNGADVNANDM-----------------EGHTPLHLAAMFGHLEIVEVLL-KNGA 137
Query: 573 VIDILTLRKQTPLHLAAEAGQLQVCKLLL 601
++ +T ++ + G + ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 146 bits (372), Expect = 9e-41
Identities = 62/171 (36%), Positives = 87/171 (50%), Gaps = 16/171 (9%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
L AA G+ D VR L+++ GA SG TPLHLAA++G+
Sbjct: 14 LGKKLLEAARAGRDDEVRILMAN-----------GADV--NAEDASGWTPLHLAAFNGHL 60
Query: 350 NVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
+V +LL G V+A G PL LA GH+ +V +LL AD+ + D G T L
Sbjct: 61 EIVEVLL-KNGADVNAVD-HAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPL 117
Query: 410 HIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQK 460
H+AA GHL++VEVLL GA++NA DK G + + G+ + L +
Sbjct: 118 HLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 142 bits (361), Expect = 3e-39
Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 4/170 (2%)
Query: 5 MSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEH 64
M G+ + S LL A G + V ++ N A V+ D G + LHLAA +
Sbjct: 1 MRGSHH---HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN 57
Query: 65 GYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTP 124
G+L++ + LL + A +N+ G T L LAA+ G+ ++ L+ + A ++ + TP
Sbjct: 58 GHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTP 116
Query: 125 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 174
LHLAA G L++ ++LL GA ++A D G+ ++ N ++A+I
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 136 bits (346), Expect = 3e-37
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 45/209 (21%)
Query: 427 QGAEIN-ATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSR 485
+G+ + + + AAR G + L+ G V+
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVN-------------------- 41
Query: 486 AADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSR 545
+ D +G T LH+AA +GHL++VEVLL GA++NA D
Sbjct: 42 ------AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA---------------- 79
Query: 546 VGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 605
G T L LAA+ G+ ++ L+ + A ++ + TPLHLAA G L++ ++LL GA
Sbjct: 80 -GMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 606 SIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
++A D G+ ++ N ++A+I
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 130 bits (331), Expect = 3e-35
Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 54 GRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV 113
L AA G L+ + A +N++ G T LHLAA NG+ ++ L+ + A
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KNGAD 72
Query: 114 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
++ + TPL LAA G L++ ++LL GA ++A D +G P+H+AA E+ +
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVE-V 131
Query: 174 LRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 211
L + + V A K G T I+ G+ + E L K +
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 120 bits (305), Expect = 8e-32
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 39/192 (20%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
L AA AG+ ++L+ GA ++A D G P+H+AA N E+ ++ L + + V
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KNGADV 73
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
A G T PL+LAA GH +V
Sbjct: 74 NAVDHAGMT------------------------------------PLRLAALFGHLEIVE 97
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 300
VL+K GA + G T +HLAA GH +++E + + A +V ++ K G TA ++
Sbjct: 98 VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGKTAFDISIDN 156
Query: 301 GQADTVRELLSH 312
G D L
Sbjct: 157 GNEDLAEILQKL 168
Score = 57.0 bits (139), Expect = 1e-09
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N G TPL +A GH+E+V +L N A V+ D+ G++A ++ ++G + + L
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 75 TH 76
Sbjct: 167 KL 168
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 152 bits (387), Expect = 7e-43
Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 29/189 (15%)
Query: 333 SESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLS 392
+E L AA G+ + LL V V+AQ G L + G + + LL
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLL-QNNVNVNAQN-GFGRTALQVMKLG-NPEIARRLLL 58
Query: 393 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVG 452
R A+ D+ G +H AA G L ++ LL A++N D G +H AA+ GH+
Sbjct: 59 RGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 453 IINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQM 512
+ V L+ A + + G T +A +G ++
Sbjct: 118 V-------------------------VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Query: 513 VEVLLGQGA 521
V ++ GA
Sbjct: 153 VSLMQANGA 161
Score = 145 bits (368), Expect = 2e-40
Identities = 46/202 (22%), Positives = 69/202 (34%), Gaps = 44/202 (21%)
Query: 404 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEK 463
L AA G L+ + LL +NA + G ++
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL---------------- 47
Query: 464 VDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEI 523
G+ + LL R A+ D+ G +H AA G L ++ LL A++
Sbjct: 48 ----------GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 524 NATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQT 583
N D G LHLAA G+ + FLV A+ + + T
Sbjct: 97 NIEDNE-----------------GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Query: 584 PLHLAAEAGQLQVCKLLLDLGA 605
LA G+ +V L+ GA
Sbjct: 140 ACDLARLYGRNEVVSLMQANGA 161
Score = 131 bits (332), Expect = 2e-35
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
L A RG +E + ++L N+ V+ + GR+AL + G ++ LL A
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP 63
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
+ K R G +H AA G+ D + L+ + A ++I PLHLAA+ G L+V + L
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 141 LDLGAS-IDATDDQGQKPIHVAAQNNFPEVAQIFL 174
+ AS + + +G +A EV +
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 124 bits (315), Expect = 3e-33
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Query: 53 EGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAA 112
+ L AA G L+ +LL + +N+++ GRTAL + G ++ R L+ A
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL-LRGA 61
Query: 113 VIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQI 172
D+ +H AA AG L + LL+ A ++ D++G P+H+AA+ V +
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 173 FLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 207
++ S V G+T +A + G V+ +
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 124 bits (314), Expect = 5e-33
Identities = 42/202 (20%), Positives = 74/202 (36%), Gaps = 47/202 (23%)
Query: 434 TDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSA 493
+ G + +AA G + + +LLQ V+
Sbjct: 2 AEPWG-NELASAAARGDLEQLTSLLQNNVNVNAQ-------------------------- 34
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
+ G+T L + G+ ++ LL +GA + D+ G +H
Sbjct: 35 NGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRT-----------------GFAVIHD 76
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS-IDATDD 612
AA G+ D + L+ + A ++I PLHLAA+ G L+V + L+ AS + +
Sbjct: 77 AARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH 135
Query: 613 QGQKPIHVAAQNNFPEVAQIFL 634
+G +A EV +
Sbjct: 136 KGDTACDLARLYGRNEVVSLMQ 157
Score = 119 bits (300), Expect = 3e-31
Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 39/192 (20%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
L AA G L+ LL +++A + G+ + V N PE+A+ L +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLL-LRGANP 63
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
+ G + AA G + ++
Sbjct: 64 DLKDRTGFA------------------------------------VIHDAARAGFLDTLQ 87
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 300
L++ A E+ G +HLAA+ GH +V+E + A NV + G TA +A +
Sbjct: 88 TLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 301 GQADTVRELLSH 312
G+ + V + ++
Sbjct: 148 GRNEVVSLMQAN 159
Score = 114 bits (287), Expect = 2e-29
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N Q G T L + G+ E+ +L A D+ D+ G + +H AA G+L LL
Sbjct: 32 NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL 90
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
+A +N + G LHLAA G+ + FLV A+ + + T LA G+
Sbjct: 91 EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150
Query: 135 QVCKLLLDLGA 145
+V L+ GA
Sbjct: 151 EVVSLMQANGA 161
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 151 bits (384), Expect = 1e-42
Identities = 51/184 (27%), Positives = 71/184 (38%), Gaps = 30/184 (16%)
Query: 336 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA 395
L AA G+ VR LL+ V DA G L + FG + LL + A
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTALQVMMFG-STAIALELLKQGA 59
Query: 396 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIIN 455
D +G + +H AA G L ++VL+ GA++N D GA IH A + GH
Sbjct: 60 SP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA--- 115
Query: 456 TLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEV 515
VV L + + L D G T L +A G +V++
Sbjct: 116 ----------------------VVSFLAAESD--LHRRDARGLTPLELALQRGAQDLVDI 151
Query: 516 LLGQ 519
L G
Sbjct: 152 LQGH 155
Score = 137 bits (347), Expect = 2e-37
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 5/158 (3%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAF 79
L A RG ++ V +L+ D ++ G++AL + G + LL A
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60
Query: 80 INSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 139
N + G + +H AA G+ D + LV +H A +++ P+HLA + G V
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLV-EHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 140 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 177
L + + D +G P+ +A Q ++ L+ H
Sbjct: 120 LAA-ESDLHRRDARGLTPLELALQRGAQDLVD-ILQGH 155
Score = 132 bits (335), Expect = 5e-36
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 19/172 (11%)
Query: 257 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPG 315
+ AA G Q + + + ++ + + G TAL V + G ELL
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQ--- 57
Query: 316 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPL 375
GAS + SG +P+H AA +G + +++L+ G V+ G P+
Sbjct: 58 --------GASP--NVQDTSGTSPVHDAARTGFLDTLKVLV-EHGADVNVPD-GTGALPI 105
Query: 376 HLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQ 427
HLA GH VV L + + L D G T L +A G +V++L G
Sbjct: 106 HLAVQEGHTAVVSFLAAESD--LHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 131 bits (332), Expect = 1e-35
Identities = 45/201 (22%), Positives = 73/201 (36%), Gaps = 48/201 (23%)
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQ-GAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
+ G L AA G +Q V LL + +A ++ G ++ +G I LL++G
Sbjct: 1 RAGDR-LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQG 58
Query: 462 EKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
+V D +G + +H AA G L ++VL+ GA
Sbjct: 59 ASPNV--------------------------QDTSGTSPVHDAARTGFLDTLKVLVEHGA 92
Query: 522 EINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRK 581
++N D G +HLA G+ + FL + + R
Sbjct: 93 DVNVPDG-----------------TGALPIHLAVQEGHTAVVSFLAA-ESD-LHRRDARG 133
Query: 582 QTPLHLAAEAGQLQVCKLLLD 602
TPL LA + G + +L
Sbjct: 134 LTPLELALQRGAQDLVDILQG 154
Score = 126 bits (319), Expect = 9e-34
Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 23/165 (13%)
Query: 474 GHVTVV-GLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V V LL + ++ GKT L + G + LL QGA N D
Sbjct: 13 GDVQEVRRLLHRELVHP-DALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTS--- 67
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
G + +H AA G+ D + LV +H A +++ P+HLA + G
Sbjct: 68 --------------GTSPVHDAARTGFLDTLKVLV-EHGADVNVPDGTGALPIHLAVQEG 112
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 637
V L + + D +G P+ +A Q ++ L+ H
Sbjct: 113 HTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVD-ILQGH 155
Score = 120 bits (304), Expect = 1e-31
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 5/157 (3%)
Query: 54 GRSALHLAAEHGYLKVCDALLT-HKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAA 112
L AA G ++ LL ++ +R G+TAL + G + L+ A
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELL-KQGA 59
Query: 113 VIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQI 172
++ +P+H AA G L K+L++ GA ++ D G PIH+A Q V
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS- 118
Query: 173 FLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK 209
FL A + G T +A +G+ +++ L
Sbjct: 119 FLAAESD-LHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 110 bits (278), Expect = 3e-28
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 3/128 (2%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ G T L + G + +L A +V D G S +H AA G+L L+
Sbjct: 30 DALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV 88
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
H A +N G +HLA G+ + FL + + R TPL LA + G
Sbjct: 89 EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESD-LHRRDARGLTPLELALQRGAQ 146
Query: 135 QVCKLLLD 142
+ +L
Sbjct: 147 DLVDILQG 154
Score = 109 bits (276), Expect = 5e-28
Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 42/193 (21%)
Query: 123 TPLHLAAEAGQLQ-VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
L AA G +Q V +LL DA + G+ + V + +A L +
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS-TAIAL-ELLKQGASP 61
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
G + P+ AA G + ++
Sbjct: 62 NVQDTSGTS------------------------------------PVHDAARTGFLDTLK 85
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 300
VLV+ GA + TG +HLA Q GH V+ + ++++ +++ + G+T L +A
Sbjct: 86 VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL-AAES-DLHRRDARGLTPLELALQR 143
Query: 301 GQADTVRELLSHV 313
G D V L H+
Sbjct: 144 GAQDLVDILQGHM 156
Score = 107 bits (269), Expect = 4e-27
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 22/144 (15%)
Query: 495 KNGKTCLHIAATHGHLQMVEVLLGQ-GAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
+ G L AA G +Q V LL + +A ++ G+TAL +
Sbjct: 1 RAGDR-LSGAAARGDVQEVRRLLHRELVHPDALNRF-----------------GKTALQV 42
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 613
G + L+ A ++ +P+H AA G L K+L++ GA ++ D
Sbjct: 43 MM-FGSTAIALELL-KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT 100
Query: 614 GQKPIHVAAQNNFPEVAQIFLRAH 637
G PIH+A Q V FL A
Sbjct: 101 GALPIHLAVQEGHTAVVS-FLAAE 123
Score = 61.3 bits (150), Expect = 4e-11
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N G P+ +A GH +V+ L + + D G + L LA + G + D L
Sbjct: 95 NVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Query: 75 TH 76
H
Sbjct: 154 GH 155
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 151 bits (384), Expect = 1e-42
Identities = 51/197 (25%), Positives = 75/197 (38%), Gaps = 45/197 (22%)
Query: 370 NGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 429
+ L A G V +L++ A + D G + LH+AA +GH EVLL G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58
Query: 430 EINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADL 489
+A K +H AA GH I+ LL+ G V+
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN------------------------ 94
Query: 490 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRT 549
+ D T LH A H H ++VE+L+ GA+++ K +T
Sbjct: 95 --AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK-----------------FCKT 135
Query: 550 ALHLAAMNGYADLCRFL 566
A ++ NG DL L
Sbjct: 136 AFDISIDNGNEDLAEIL 152
Score = 139 bits (353), Expect = 2e-38
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 2/152 (1%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
LL A G + V ++ N A D G S LHLAA++G+ + LL
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
+++++V RT LH+AA G+A++ L+ H A ++ + K T LH A E +V +LL
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLL-KHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 141 LDLGASIDATDDQGQKPIHVAAQNNFPEVAQI 172
+ GA + + ++ N ++A+I
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Score = 139 bits (353), Expect = 2e-38
Identities = 48/197 (24%), Positives = 77/197 (39%), Gaps = 45/197 (22%)
Query: 404 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEK 463
+ L AA G V +L+ GA D G +H AA+YGH LL+ G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 464 VDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEI 523
D + K +T LH+AA+ GH +VEVLL GA++
Sbjct: 60 RD--------------------------ARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 524 NATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQT 583
NA D + TALH A + + ++ L+ + A + + +T
Sbjct: 94 NAKDML-----------------KMTALHWATEHNHQEVVELLI-KYGADVHTQSKFCKT 135
Query: 584 PLHLAAEAGQLQVCKLL 600
++ + G + ++L
Sbjct: 136 AFDISIDNGNEDLAEIL 152
Score = 137 bits (347), Expect = 1e-37
Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 20/160 (12%)
Query: 473 CGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDA 532
G V +L++ A + D G + LH+AA +GH EVLL G +A KV
Sbjct: 12 AGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV--- 66
Query: 533 LLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
RT LH+AA G+A++ L+ H A ++ + K T LH A E
Sbjct: 67 --------------DRTPLHMAASEGHANIVEVLL-KHGADVNAKDMLKMTALHWATEHN 111
Query: 593 QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQI 632
+V +LL+ GA + + ++ N ++A+I
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Score = 125 bits (316), Expect = 2e-33
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 17/168 (10%)
Query: 257 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT 316
+ AA+ G + + + ++ A + LG + LH+AA +G T LL
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRA---- 56
Query: 317 VKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLH 376
G S + ++ TPLH+AA G+ N+V +LL G V+A+ LH
Sbjct: 57 -------GVSR--DARTKVDRTPLHMAASEGHANIVEVLL-KHGADVNAKD-MLKMTALH 105
Query: 377 LACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
A H VV LL+ AD + + K KT I+ +G+ + E+L
Sbjct: 106 WATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 124 bits (313), Expect = 5e-33
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 3/155 (1%)
Query: 53 EGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAA 112
+ L AA G L+ + A +G + LHLAA G+ L+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLL-RAGV 58
Query: 113 VIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQI 172
D T +TPLH+AA G + ++LL GA ++A D +H A ++N EV +
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE- 117
Query: 173 FLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 207
L + + V +K T I+ G+ + E L
Sbjct: 118 LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 112 bits (283), Expect = 5e-29
Identities = 46/188 (24%), Positives = 67/188 (35%), Gaps = 39/188 (20%)
Query: 87 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 146
L AA G D R L+ + A +PLHLAA+ G ++LL G S
Sbjct: 2 LGKKLLEAARAGQDDEVRILM-ANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 147 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEE 206
DA + P+H+AA + ++ L H + V A
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLL-KHGADVNAKDMLKM----------------- 101
Query: 207 LMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 266
T L A E H VV +L+K GA ++K TA ++
Sbjct: 102 -------------------TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID 142
Query: 267 NGHNQVLE 274
NG+ + E
Sbjct: 143 NGNEDLAE 150
Score = 109 bits (274), Expect = 8e-28
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 21/171 (12%)
Query: 187 DGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVK 245
D AA G + LM +G + +PL LAA+ GH + VL++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMA---NGAPFTTDWL--GTSPLHLAAQYGHFSTTEVLLR 55
Query: 246 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQAD 304
AG S K T +H+AA GH ++E + A +V +K L +TALH A +
Sbjct: 56 AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA-DVNAKDMLKMTALHWATEHNHQE 114
Query: 305 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLL 355
V L+ + GA S+ T ++ +GNE++ +L
Sbjct: 115 VVELLIKY-----------GADV--HTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 109 bits (274), Expect = 9e-28
Identities = 52/190 (27%), Positives = 77/190 (40%), Gaps = 41/190 (21%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
L AA AGQ ++L+ GA D G P+H+AAQ ++ LR
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLR-AGVSR 60
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
A TK T PL +AA GHAN+V
Sbjct: 61 DARTKVDRT------------------------------------PLHMAASEGHANIVE 84
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 300
VL+K GA ++ TA+H A ++ H +V+E + A +V+++ K TA ++
Sbjct: 85 VLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA-DVHTQSKFCKTAFDISIDN 143
Query: 301 GQADTVRELL 310
G D E+L
Sbjct: 144 GNEDLA-EIL 152
Score = 90.9 bits (227), Expect = 2e-21
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ +T + TPL +A + GH +V +L + A V+ D +ALH A EH + +V + L+
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
+ A ++++S+ +TA ++ NG DL L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 81.7 bits (203), Expect = 3e-18
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 547 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 606
L AA G D R L+ + A +PLHLAA+ G ++LL G S
Sbjct: 2 LGKKLLEAARAGQDDEVRILM-ANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 607 IDATDDQGQKPIHVAAQNNFPEVAQIFL 634
DA + P+H+AA + ++ L
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLL 87
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 151 bits (383), Expect = 3e-42
Identities = 48/188 (25%), Positives = 69/188 (36%), Gaps = 29/188 (15%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
L AA +G+ V+ L V PLH A V+VV LL
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 394 AADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGI 453
AD + + DK G LH A ++GH ++ E+L+ GA +N D +H AA G I
Sbjct: 65 GAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123
Query: 454 INTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMV 513
LLQ G +++G T L + G +
Sbjct: 124 CKLLLQHGADPTKK--------------------------NRDGNTPLDLVK-DGDTDIQ 156
Query: 514 EVLLGQGA 521
++L G A
Sbjct: 157 DLLRGDAA 164
Score = 145 bits (369), Expect = 2e-40
Identities = 51/205 (24%), Positives = 76/205 (37%), Gaps = 45/205 (21%)
Query: 369 ENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 428
L A G V V L + + + + T LH AA + + +VE LL G
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 429 AEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAAD 488
A+++A DKGG +H A YGH + L++ G V+V
Sbjct: 66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA--------------------- 104
Query: 489 LLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGR 548
D T LH AA G ++ ++LL GA+ ++ G
Sbjct: 105 -----DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR-----------------DGN 142
Query: 549 TALHLAAMNGYADLCRFLVHDHAAV 573
T L L +G D+ L AA+
Sbjct: 143 TPLDLVK-DGDTDIQDLLR-GDAAL 165
Score = 140 bits (357), Expect = 8e-39
Identities = 49/205 (23%), Positives = 71/205 (34%), Gaps = 46/205 (22%)
Query: 402 DKNGKTCLHIAATHGHLQMVEVLL-GQGAEINATDKGGARSIHTAARYGHVGIINTLLQK 460
+ L AA G ++ V+ L Q + + +H AA Y V ++ LLQ
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 461 GEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 520
G V DK G LH A ++GH ++ E+L+ G
Sbjct: 65 GADVHAK--------------------------DKGGLVPLHNACSYGHYEVAELLVKHG 98
Query: 521 AEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 580
A +N D T LH AA G ++C+ L+ H A
Sbjct: 99 AVVNVADL-----------------WKFTPLHEAAAKGKYEICKLLL-QHGADPTKKNRD 140
Query: 581 KQTPLHLAAEAGQLQVCKLLLDLGA 605
TPL L + G + LL A
Sbjct: 141 GNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 136 bits (346), Expect = 3e-37
Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDV--FDQEGRSALHLAAEHGYLKVCDALLTHKA 78
LL A G +E V + + V+ + + LH AA + + V + LL H A
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 66
Query: 79 FINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCK 138
+++K + G LH A G+ ++ LV H AV+++ L K TPLH AA G+ ++CK
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEAAAKGKYEICK 125
Query: 139 LLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 177
LLL GA + G P+ + + ++ LR
Sbjct: 126 LLLQHGADPTKKNRDGNTPLDLVKDGDT-DIQD-LLRGD 162
Score = 131 bits (333), Expect = 2e-35
Identities = 54/210 (25%), Positives = 81/210 (38%), Gaps = 48/210 (22%)
Query: 428 GAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAA 487
GA N R + AA+ G V V L + +
Sbjct: 1 GAMGN---SEADRQLLEAAKAGDVET-------------------------VKKLCTVQS 32
Query: 488 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVG 547
+ + T LH AA + + +VE LL GA+++A DK G
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG-----------------G 75
Query: 548 RTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 607
LH A G+ ++ LV H AV+++ L K TPLH AA G+ ++CKLLL GA
Sbjct: 76 LVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 134
Query: 608 DATDDQGQKPIHVAAQNNFPEVAQIFLRAH 637
+ G P+ + + ++ LR
Sbjct: 135 TKKNRDGNTPLDLVKDGDT-DIQD-LLRGD 162
Score = 120 bits (303), Expect = 2e-31
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 78 AFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVC 137
A NS+ L AA G + + L + + R+ TPLH AA ++ V
Sbjct: 2 AMGNSE---ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV 58
Query: 138 KLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAM 197
+ LL GA + A D G P+H A EVA++ + H ++V T H AA
Sbjct: 59 EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEAAA 117
Query: 198 QGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 248
+G + + L++ G + +NR TPL L + G ++ +L A
Sbjct: 118 KGKYEICKLLLQ---HGADPTKKNR-DGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 119 bits (300), Expect = 4e-31
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 4/158 (2%)
Query: 51 DQEGRSALHLAAEHGYLKVCDALLTHKAF-INSKSRVGRTALHLAAMNGYADLCRFLVHD 109
+ E L AA+ G ++ L T ++ T LH AA + +L+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-Q 63
Query: 110 HAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEV 169
H A + PLH A G +V +LL+ GA ++ D P+H AA E+
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123
Query: 170 AQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 207
++ L+ H + T +DGNT + G + + L
Sbjct: 124 CKLLLQ-HGADPTKKNRDGNTPLDLVK-DGDTDIQDLL 159
Score = 107 bits (271), Expect = 3e-27
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 2/131 (1%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
TPL A + +V +L + A V D+ G LH A +G+ +V + L+
Sbjct: 36 RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV 95
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQL 134
H A +N T LH AA G ++C+ L+ H A TPL L + G
Sbjct: 96 KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL-QHGADPTKKNRDGNTPLDLVKD-GDT 153
Query: 135 QVCKLLLDLGA 145
+ LL A
Sbjct: 154 DIQDLLRGDAA 164
Score = 104 bits (262), Expect = 6e-26
Identities = 44/193 (22%), Positives = 64/193 (33%), Gaps = 41/193 (21%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDL-GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
L AA+AG ++ K L + + + + P+H AA N V + L H +
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGAD 67
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 240
V A K G PL A GH V
Sbjct: 68 VHAKDKGGLV------------------------------------PLHNACSYGHYEVA 91
Query: 241 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAY 299
+LVK GA + FT +H AA G ++ + + A + K + G T L +
Sbjct: 92 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA-DPTKKNRDGNTPLDLVKD 150
Query: 300 FGQADTVRELLSH 312
G D L
Sbjct: 151 -GDTDIQDLLRGD 162
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 150 bits (381), Expect = 2e-41
Identities = 47/260 (18%), Positives = 84/260 (32%), Gaps = 51/260 (19%)
Query: 387 VGLLLSRAADLLQSADK---NGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIH 443
+ +L +A + A + N L AA G L++V+ + + + + ++ G ++H
Sbjct: 1 MRSVLRKAGSP-RKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALH 59
Query: 444 TAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHI 503
A + I++ L+ G V+ S D +G T LH
Sbjct: 60 NAICGANYSIVDFLITAGANVN--------------------------SPDSHGWTPLHC 93
Query: 504 AATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM--NGYAD 561
AA+ + L+ GA I AT G TA GYAD
Sbjct: 94 AASCNDTVICMALVQHGAAIFATTL----------------SDGATAFEKCDPYREGYAD 137
Query: 562 LCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 621
+L D + ++ L + A ++ D + A
Sbjct: 138 CATYLA-DVEQSMGLMNSGAVYALWDYS-AEFGDELSFREGESVTVLRRDGPEETDWWWA 195
Query: 622 AQNNFPE-VAQIFLRAHPSL 640
A + V + + P +
Sbjct: 196 ALHGQEGYVPRNYFGLFPRV 215
Score = 146 bits (370), Expect = 9e-40
Identities = 44/275 (16%), Positives = 76/275 (27%), Gaps = 55/275 (20%)
Query: 352 VRLLLNSAGVQVDAQTQE--NGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
+R +L + N L A G + VV + D ++ G T L
Sbjct: 1 MRSVL-RKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITAL 58
Query: 410 HIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTN 469
H A + +V+ L+ GA +N+ D G +H AA
Sbjct: 59 HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS---------------------- 96
Query: 470 NLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATH--GHLQMVEVLLGQGAEINATD 527
C + L+ A + + +G T + G+ L + +
Sbjct: 97 ---CNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN 153
Query: 528 KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRK--QTPL 585
AL + + D F + +L +T
Sbjct: 154 S-----------------GAVYALWDYS-AEFGDELSFR---EGESVTVLRRDGPEETDW 192
Query: 586 HLAAEAGQLQ-VCKLLLDLGASIDATDDQGQKPIH 619
AA GQ V + L + + + H
Sbjct: 193 WWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
Score = 140 bits (354), Expect = 1e-37
Identities = 37/221 (16%), Positives = 68/221 (30%), Gaps = 23/221 (10%)
Query: 240 VRVLVKAGASCTDENK---TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALH 295
+R +++ S + + AA G +V+++ + + G+TALH
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN-DPSQPNEEGITALH 59
Query: 296 VAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLL 355
A V L++ GA+ G TPLH AA + + L
Sbjct: 60 NAICGANYSIVDFLITA-----------GANV--NSPDSHGWTPLHCAASCNDTVICMAL 106
Query: 356 LNSAGVQVDAQTQENGYNPLHLA--CFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAA 413
+ G + A T +G G+ L + + L +
Sbjct: 107 V-QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYS 164
Query: 414 THGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGII 454
+ + G+ + D AA +G G +
Sbjct: 165 AEFGDE-LSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204
Score = 134 bits (340), Expect = 8e-36
Identities = 45/194 (23%), Positives = 65/194 (33%), Gaps = 6/194 (3%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ LL A G +E+V + ++EG +ALH A + D L+
Sbjct: 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLI 74
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRK-QTPLHLAAEA-- 131
T A +NS G T LH AA +C LV H A I TL T
Sbjct: 75 TAGANVNSPDSHGWTPLHCAASCNDTVICMALV-QHGAAIFATTLSDGATAFEKCDPYRE 133
Query: 132 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 191
G L D+ S+ + + + E++ F V T
Sbjct: 134 GYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS--FREGESVTVLRRDGPEETD 191
Query: 192 AHIAAMQGSVGVIE 205
AA+ G G +
Sbjct: 192 WWWAALHGQEGYVP 205
Score = 121 bits (305), Expect = 4e-31
Identities = 35/229 (15%), Positives = 57/229 (24%), Gaps = 42/229 (18%)
Query: 47 VDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
L AA G L+V + + + G TALH A + FL
Sbjct: 14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFL 73
Query: 107 VHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ-GQKPIHVAA--Q 163
+ A ++ TPLH AA +C L+ GA+I AT G +
Sbjct: 74 I-TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYR 132
Query: 164 NNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVT 223
+ + A +L + +
Sbjct: 133 EGYADCAT-YLADVEQSMGLMNSGAVYALWDYSA-------------------------- 165
Query: 224 EATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV 272
+ + + + T AA +G
Sbjct: 166 -----------EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGY 203
Score = 110 bits (278), Expect = 2e-27
Identities = 41/279 (14%), Positives = 70/279 (25%), Gaps = 59/279 (21%)
Query: 138 KLLLDLGASIDATDDQGQKPI---HVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI 194
+ +L S P+ AA EV Q + + + ++G T
Sbjct: 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAV-KEMNDPSQPNEEGIT---- 56
Query: 195 AAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN 254
L A G + ++V L+ AGA+ +
Sbjct: 57 --------------------------------ALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 255 KTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYF--GQADTVRELLS 311
G+T +H AA + + A + + G TA + G AD L
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD 144
Query: 312 HVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENG 371
S L + + L + + + V V +
Sbjct: 145 V-----------EQSM--GLMNSGAVYALWDYSAEFGDEL--SFREGESVTVLRR-DGPE 188
Query: 372 YNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLH 410
A G V ++ K H
Sbjct: 189 ETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
Score = 29.2 bits (66), Expect = 6.2
Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELV-NTMLNNHARVDVFDQEGRSALH 59
+ ++ T A G V RV + + H
Sbjct: 181 VLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 151 bits (384), Expect = 4e-41
Identities = 50/288 (17%), Positives = 78/288 (27%), Gaps = 65/288 (22%)
Query: 338 TPLHLAAYSGNENVVRLLLN------SAGVQVDAQTQENGYNPLHLACF---GGHVTVVG 388
+ A N + LL + + E G L A G +
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74
Query: 389 LLLSRAADL----------LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGG 438
LLL A + G+T LHIA ++ +V +L+ GA++ A G
Sbjct: 75 LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD 134
Query: 439 ARS--------------IHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLS 484
+ AA + I+ LLQ
Sbjct: 135 FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS----------------------W 172
Query: 485 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKS 544
+ AD + + D G T LH + L +
Sbjct: 173 QPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK-LHPTLKLEEITN 230
Query: 545 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 592
R G T L LAA +G + +++ + H AA
Sbjct: 231 RKGLTPLALAASSGKIGVLAYILQREI--------HEPECRHAAAHHH 270
Score = 151 bits (382), Expect = 6e-41
Identities = 62/330 (18%), Positives = 97/330 (29%), Gaps = 72/330 (21%)
Query: 246 AGASCTDENKTGFTAVHLAAQNGHNQVLEE-----MRSSKAL---NVYSKKLGVTALHVA 297
A ++ A + Q LE RS K L + G T L A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 298 ---AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRL 354
+ GQ DT+ LL T AS+ G T LH+A N +V L
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYK--GQTALHIAIERRNMTLVTL 119
Query: 355 LLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAAT 414
L+ G V A + G + G+ L +AA
Sbjct: 120 LV-ENGADVQAAA-NGDFFKKTKGRPGFY--------------------FGELPLSLAAC 157
Query: 415 HGHLQMVEVLLGQG---AEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNL 471
L +V+ LL A+I+A D G +H + NT ++
Sbjct: 158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKF---------VTSM 208
Query: 472 ACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCD 531
+ + L ++ G T L +AA+ G + ++ +L +
Sbjct: 209 YNEILILGAKLHPTLKLEE-ITNRKGLTPLALAASSGKIGVLAYILQREIH--------- 258
Query: 532 ALLTHKAFINSKSRVGRTALHLAAMNGYAD 561
H AA + +
Sbjct: 259 ---------------EPECRHAAAHHHHHH 273
Score = 134 bits (339), Expect = 3e-35
Identities = 50/266 (18%), Positives = 83/266 (31%), Gaps = 50/266 (18%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTD--------ENKTGFTAVHLA---AQNGHNQVLE 274
+ A + + L+ + +TG T + A NG N +
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74
Query: 275 EMRSSKALNVYSKKL-----------GVTALHVAAYFGQADTVRELLSHVPG---TVKSD 320
+ K+ G TALH+A V L+ + G ++
Sbjct: 75 LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN--GADVQAAAN 132
Query: 321 PPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ-ENGYNPLHLAC 379
G G G PL LAA + +V+ LL ++ D + G LH
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV 192
Query: 380 FGGHVTVV---------GLLLSRAADLLQSA------DKNGKTCLHIAATHGHLQMVEVL 424
TV +L A L + ++ G T L +AA+ G + ++ +
Sbjct: 193 EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI 252
Query: 425 LGQGAEINATDKGGARSIHTAARYGH 450
L + H AA + H
Sbjct: 253 LQREIHEPEC-------RHAAAHHHH 271
Score = 130 bits (329), Expect = 7e-34
Identities = 55/295 (18%), Positives = 90/295 (30%), Gaps = 66/295 (22%)
Query: 45 ARVDVFDQEGRSALHLAAEHGYLKVCDALL-------THKAFINSKSR-VGRTALHLAAM 96
A R ++ A + ++LL K G+T L A +
Sbjct: 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63
Query: 97 N---GYADLCRFLVHDHAAVIDILTL-----------RKQTPLHLAAEAGQLQVCKLLLD 142
N G D L+ D A D L + QT LH+A E + + LL++
Sbjct: 64 NLHNGQNDTIALLL-DVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122
Query: 143 LGASIDATDD--------------QGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTK 186
GA + A + G+ P+ +AA N + + L+ P+ ++A
Sbjct: 123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182
Query: 187 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 246
GNT H + + T + + L
Sbjct: 183 VGNTVLHALVEVA--------------------DNTVDNTKFVTSMYNEILILGAKLHPT 222
Query: 247 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFG 301
N+ G T + LAA +G VL + + H AA+
Sbjct: 223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHH 270
Score = 119 bits (299), Expect = 6e-30
Identities = 54/271 (19%), Positives = 85/271 (31%), Gaps = 65/271 (23%)
Query: 16 KQTSIGWTPLLIA---CNRGHMELVNTMLNNHARVDVF-----------DQEGRSALHLA 61
K G T LL A + G + + +L+ + D +G++ALH+A
Sbjct: 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIA 108
Query: 62 AEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRK 121
E + + L+ + A + + + Y
Sbjct: 109 IERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFY--------------------FG 148
Query: 122 QTPLHLAAEAGQLQVCKLLLDLG---ASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 178
+ PL LAA QL + K LL A I A D G +H + V
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKF---- 204
Query: 179 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN 238
T N + A +EE+ +R G+ TPL LAA G
Sbjct: 205 -----VTSMYNEILILGAKLHPTLKLEEIT--NRKGL----------TPLALAASSGKIG 247
Query: 239 VVRVLVKAGASCTDENKTGFTAVHLAAQNGH 269
V+ +++ H AA + H
Sbjct: 248 VLAYILQREIH-------EPECRHAAAHHHH 271
Score = 103 bits (259), Expect = 1e-24
Identities = 41/202 (20%), Positives = 59/202 (29%), Gaps = 43/202 (21%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQE--------------GRSALHL 60
G T L IA R +M LV ++ N A V G L L
Sbjct: 95 TDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSL 154
Query: 61 AAEHGYLKVCDALLTH---KAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDIL 117
AA L + LL + A I+++ VG T LH +
Sbjct: 155 AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA---------DNTVD----- 200
Query: 118 TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 177
T + L + L + T+ +G P+ +AA + V L+
Sbjct: 201 ----NTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE 256
Query: 178 PSLVTATTKDGNTCAHIAAMQG 199
C H AA
Sbjct: 257 --------IHEPECRHAAAHHH 270
Score = 90.2 bits (224), Expect = 6e-20
Identities = 47/287 (16%), Positives = 84/287 (29%), Gaps = 85/287 (29%)
Query: 428 GAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAA 487
A RSI A + + +LL + R
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLP------------------FLQRSKKRLT 44
Query: 488 DLLQSADKNGKTCLHIA---ATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKS 544
D + GKTCL A +G + +LL + ++ + +A T +
Sbjct: 45 DSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYY----- 99
Query: 545 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 604
+ QT LH+A E + + LL++ G
Sbjct: 100 -----------------------------------KGQTALHIAIERRNMTLVTLLVENG 124
Query: 605 ASIDATDD--------------QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEK-- 648
A + A + G+ P+ +AA N + + L+ + ++
Sbjct: 125 ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVG 184
Query: 649 --------ERAKDLIAAGKHCEGMATELLALAAGADSAGRILTATDR 687
E A + + K M E+L L A ++ T+R
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR 231
Score = 77.1 bits (190), Expect = 1e-15
Identities = 28/163 (17%), Positives = 49/163 (30%), Gaps = 28/163 (17%)
Query: 6 SGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN---HARVDVFDQEGRSALHLAA 62
G PL +A + +V +L N A + D G + LH
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV 192
Query: 63 EHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ 122
E V + + + + +H + +I +
Sbjct: 193 EVADNTVDNTKFVTSMY---------NEILILGAK---------LHPTLKLEEITNRKGL 234
Query: 123 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN 165
TPL LAA +G++ V +L + H AA ++
Sbjct: 235 TPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHH 270
Score = 66.3 bits (162), Expect = 6e-12
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 23/104 (22%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTML----------------NNHARVDVFDQEGRSA 57
++ + S+G T L + NT ++ +++G +
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236
Query: 58 LHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYAD 101
L LAA G + V +L + H AA + +
Sbjct: 237 LALAASSGKIGVLAYILQREIH-------EPECRHAAAHHHHHH 273
Score = 57.9 bits (140), Expect = 4e-09
Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 21/122 (17%)
Query: 535 THKAFINSKSRVGRTALHLAAMNGYAD----LCRFLVHDHAAVIDILTLRK---QTPLHL 587
+ A R ++ A L FL + D +T L
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60
Query: 588 A---AEAGQLQVCKLLLDLGASIDAT-----------DDQGQKPIHVAAQNNFPEVAQIF 633
A GQ LLLD+ D+ +GQ +H+A + + +
Sbjct: 61 AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120
Query: 634 LR 635
+
Sbjct: 121 VE 122
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 146 bits (371), Expect = 7e-41
Identities = 42/182 (23%), Positives = 54/182 (29%), Gaps = 36/182 (19%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
E L AA G VR LL AG +A G P+ + G V LLL
Sbjct: 10 EPSADWLATAAARGRVEEVRALL-EAGANPNAPN-SYGRRPIQVMMMG-SARVAELLLLH 66
Query: 394 AADLLQSADKNGKTC-LHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVG 452
A+ AD T +H AA G L + VL GA ++ D G + A GH
Sbjct: 67 GAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD 125
Query: 453 IINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQM 512
+ L G I A G +
Sbjct: 126 VARYLRAAA-------------------------------GGTRGSNHARIDAAEGPSDI 154
Query: 513 VE 514
+
Sbjct: 155 PD 156
Score = 136 bits (345), Expect = 3e-37
Identities = 35/168 (20%), Positives = 55/168 (32%), Gaps = 21/168 (12%)
Query: 286 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 345
S + L AA G+ + VR LL GA+ + G P+ +
Sbjct: 8 SMEPSADWLATAAARGRVEEVRALLEA-----------GANP--NAPNSYGRRPIQVMMM 54
Query: 346 SGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNG 405
G+ V LLL G + + P+H A G + + +L A L D G
Sbjct: 55 -GSARVAELLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWG 111
Query: 406 KTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGI 453
+ + +A GH + L ++ A G I
Sbjct: 112 RLPVDLAEELGHRDVARYLRAAAGGTRGSNHA-----RIDAAEGPSDI 154
Score = 134 bits (341), Expect = 9e-37
Identities = 44/196 (22%), Positives = 59/196 (30%), Gaps = 51/196 (26%)
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
+ L AA G ++ V LL GA NA + G R I
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-------------- 54
Query: 462 EKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTC-LHIAATHGHLQMVEVLLGQG 520
G V LLL A+ AD T +H AA G L + VL G
Sbjct: 55 ------------GSARVAELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAG 101
Query: 521 AEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 580
A ++ D GR + LA G+ D+ R+L A
Sbjct: 102 ARLDVRDA-----------------WGRLPVDLAEELGHRDVARYLR-AAAGGTR----- 138
Query: 581 KQTPLHLAAEAGQLQV 596
+ A G +
Sbjct: 139 GSNHARIDAAEGPSDI 154
Score = 128 bits (324), Expect = 2e-34
Identities = 35/162 (21%), Positives = 56/162 (34%), Gaps = 8/162 (4%)
Query: 10 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 69
+ A L A RG +E V +L A + + GR + + G +V
Sbjct: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARV 59
Query: 70 CDALLTHKAFINSKSRVGRT-ALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLA 128
+ LL H A N T +H AA G+ D L A +D+ + P+ LA
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-RAGARLDVRDAWGRLPVDLA 118
Query: 129 AEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 170
E G V + L ++ + A ++
Sbjct: 119 EELGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDIP 155
Score = 121 bits (306), Expect = 5e-32
Identities = 39/181 (21%), Positives = 62/181 (34%), Gaps = 27/181 (14%)
Query: 244 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQ 302
++ A + E + AA G + + + + A N + G + V G
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGA-NPNAPNSYGRRPIQVMMM-GS 56
Query: 303 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMT-PLHLAAYSGNENVVRLLLNSAGV 361
A LL H GA + +T P+H AA G + + +L AG
Sbjct: 57 ARVAELLLLH-----------GAEP--NCADPATLTRPVHDAAREGFLDTLVVLH-RAGA 102
Query: 362 QVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMV 421
++D + G P+ LA GH V L + A G I A G +
Sbjct: 103 RLDVRD-AWGRLPVDLAEELGHRDVARYLRAAAGG------TRGSNHARIDAAEGPSDIP 155
Query: 422 E 422
+
Sbjct: 156 D 156
Score = 117 bits (296), Expect = 1e-30
Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 9/162 (5%)
Query: 45 ARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCR 104
+ L AA G ++ ALL A N+ + GR + + M G A +
Sbjct: 3 PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAE 61
Query: 105 FLVHDHAAVIDILTLRKQT-PLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQ 163
L+ H A + T P+H AA G L +L GA +D D G+ P+ +A +
Sbjct: 62 LLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120
Query: 164 NNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 205
+VA+ +LRA + I A +G + +
Sbjct: 121 LGHRDVAR-YLRAAAGGTRGSNHA-----RIDAAEGPSDIPD 156
Score = 115 bits (291), Expect = 5e-30
Identities = 36/142 (25%), Positives = 54/142 (38%), Gaps = 20/142 (14%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
+ L AA G ++ V LL GA NA + GR + +
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSY-----------------GRRPIQV 51
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQT-PLHLAAEAGQLQVCKLLLDLGASIDATDD 612
M G A + L+ H A + T P+H AA G L +L GA +D D
Sbjct: 52 MMM-GSARVAELLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA 109
Query: 613 QGQKPIHVAAQNNFPEVAQIFL 634
G+ P+ +A + +VA+
Sbjct: 110 WGRLPVDLAEELGHRDVARYLR 131
Score = 112 bits (284), Expect = 3e-29
Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 42/186 (22%)
Query: 121 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 180
L AA G+++ + LL+ GA+ +A + G++PI V + VA++ L H +
Sbjct: 12 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA-RVAELLL-LHGAE 69
Query: 181 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 240
T P+ AA G + +
Sbjct: 70 PNCADPATLT-----------------------------------RPVHDAAREGFLDTL 94
Query: 241 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYF 300
VL +AGA + G V LA + GH V +R++ G + A
Sbjct: 95 VVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG-GTR----GSNHARIDAAE 149
Query: 301 GQADTV 306
G +D
Sbjct: 150 GPSDIP 155
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 153 bits (387), Expect = 2e-40
Identities = 54/315 (17%), Positives = 87/315 (27%), Gaps = 51/315 (16%)
Query: 338 TPLHLAAYSGNEN---VVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRA 394
+AA +G + + LLL ++ V Y LA GH+ V+ L A
Sbjct: 94 VICFVAAITGCSSALDTLCLLL-TSDEIVKVIQ-AENYQAFRLAAENGHLHVLNRLCELA 151
Query: 395 ADLLQS-ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATD--KGGARSIHTAA-RYGH 450
+ + +AA +GHL ++ L + AA GH
Sbjct: 152 PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH 211
Query: 451 VGIINTLLQKGEKVDVTTNNLAC-GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGH 509
+IN LL + + G V + L K ++ G
Sbjct: 212 HNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL-----KEMHDAFKLSNPDGV 266
Query: 510 LQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNG---YADLCRFL 566
+V S+ G L D RFL
Sbjct: 267 FDLVT--------------------------KSECLQGFYMLRNLIRRNDEVLLDDIRFL 300
Query: 567 VH----DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAA 622
+ A + L LA G C LLL + + + T ++
Sbjct: 301 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK---ANNYYINE 357
Query: 623 QNNFPEVAQIFLRAH 637
++ + L H
Sbjct: 358 TGGRLDLRAVALEHH 372
Score = 152 bits (384), Expect = 3e-40
Identities = 56/376 (14%), Positives = 112/376 (29%), Gaps = 52/376 (13%)
Query: 232 AEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGV 291
+ + + + + E ++ A N + + L K +
Sbjct: 42 MTLSYKEAIHIFLPGTKN--MEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSE------ 93
Query: 292 TALHVAAYFGQA---DTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN 348
VAA G + DT+ LL+ + ++ LAA +G+
Sbjct: 94 VICFVAAITGCSSALDTLCLLLTS-----------DE--IVKVIQAENYQAFRLAAENGH 140
Query: 349 ENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQS-ADKNGKT 407
+V+ L A ++ A Q Y+ LA GH+ V+ L A +
Sbjct: 141 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 200
Query: 408 CLHIAAT-HGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDV 466
AA GH ++ LL + + YG + + + ++
Sbjct: 201 AFRWAAVGRGHHNVINFLLDCPVMLAYAEIH-------EFEYGEKYVNPFIARHVNRLKE 253
Query: 467 TTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINAT 526
+ + V L+++ S G L +++ +
Sbjct: 254 MHDAFKLSNPDGVFDLVTK------SECLQGFYMLRNLIRRNDEVLLDDI---------R 298
Query: 527 DKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLH 586
+ + A + L LA G C L+ + +L L K +
Sbjct: 299 FLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS----VLALTKANNYY 354
Query: 587 LAAEAGQLQVCKLLLD 602
+ G+L + + L+
Sbjct: 355 INETGGRLDLRAVALE 370
Score = 140 bits (354), Expect = 3e-36
Identities = 48/353 (13%), Positives = 91/353 (25%), Gaps = 57/353 (16%)
Query: 230 LAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR---SSKALNVYS 286
L H N + + A + +AA G + L+ + +S +
Sbjct: 67 LCLYYAHYNRNAKQLWSDA--HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI 124
Query: 287 KKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYS 346
+ A +AA G + L P + + LAA +
Sbjct: 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI-----------QAENYHAFRLAAEN 173
Query: 347 GNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFG-GHVTVVGLLLSRAADLLQSADKNG 405
G+ +V+ L A + A Q Y A G GH V+ LL L
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML-------- 225
Query: 406 KTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVD 465
+G + + + + + G ++
Sbjct: 226 AYAEIHEFEYGEKYVNPFIARHVNRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYM 281
Query: 466 VTTNNLACGHVTVVGLL--LSRAADLLQSA-----DKNGKTCLHIAATHGHLQMVEVLLG 518
+ N + ++ + L + A + L +A G+ +LL
Sbjct: 282 LR-NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 340
Query: 519 QGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHA 571
+ + T ++ G DL + H
Sbjct: 341 IPSVLALTKA--------------------NNYYINETGGRLDLRAVALEHHH 373
Score = 134 bits (339), Expect = 3e-34
Identities = 60/363 (16%), Positives = 105/363 (28%), Gaps = 50/363 (13%)
Query: 77 KAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ--- 133
F+ + + L + + + A I + + +AA G
Sbjct: 51 HIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGI---KSEVICFVAAITGCSSA 107
Query: 134 LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT-TKDGNTCA 192
L LLL + + + +AA+N V P+ + A +
Sbjct: 108 LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 167
Query: 193 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 252
+AA G + V+ L + + + A GH NV+ L+
Sbjct: 168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY 227
Query: 253 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSH 312
A + G V + + + + +H A D V +L++
Sbjct: 228 -------AEIHEFEYGEKYV------NPFIARHVN--RLKEMHDAFKLSNPDGVFDLVTK 272
Query: 313 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN---VVRLLLNSAGVQVDAQ--- 366
G L +E +R LL+ G++ A
Sbjct: 273 SEC------------------LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT 314
Query: 367 TQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLG 426
+ L LA G+ LLLS + L + N +I T G L + V L
Sbjct: 315 IPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN----YYINETGGRLDLRAVALE 370
Query: 427 QGA 429
Sbjct: 371 HHH 373
Score = 132 bits (333), Expect = 2e-33
Identities = 48/329 (14%), Positives = 79/329 (24%), Gaps = 82/329 (24%)
Query: 226 TPLQLAAEGGHAN---VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 282
+AA G ++ + +L+ + + A LAA+NGH VL +
Sbjct: 94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 153
Query: 283 NVYSKKL--GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 340
+ + A +AA G + L P +
Sbjct: 154 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI-----------QAENYYAF 202
Query: 341 HLAAYS-GNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQ 399
AA G+ NV+ LL V + G V + L +
Sbjct: 203 RWAAVGRGHHNVINFLL-DCPVMLAYA--------EIHEFEYGEKYVNPFIARHVNRLKE 253
Query: 400 -------------------SADKNGKTCLHIAATHGHLQMVEVL--------LGQGAEIN 432
S G L +++ + + A
Sbjct: 254 MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA 313
Query: 433 ATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQS 492
+ A R G+ G LL + +T N
Sbjct: 314 TIPGDANELLRLALRLGNQGACALLLSIPSVLALTKAN---------------------- 351
Query: 493 ADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
+I T G L + V L
Sbjct: 352 -------NYYINETGGRLDLRAVALEHHH 373
Score = 128 bits (323), Expect = 3e-32
Identities = 47/319 (14%), Positives = 89/319 (27%), Gaps = 42/319 (13%)
Query: 9 EISKALNKQTSIGWTPLLIAC---NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 65
++ +K+ +A ++ + +L + V V E A LAAE+G
Sbjct: 80 QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 139
Query: 66 YLKVCDALLTHKAFINS--KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDI-LTLRKQ 122
+L V + L A LAA NG+ + L +
Sbjct: 140 HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY 199
Query: 123 TPLHLAA-EAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
AA G V LLD + + + V F+ H
Sbjct: 200 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH-------EFEYGEKYVNP-FIARHV--- 248
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
K+ + ++ G ++ + L+ ++
Sbjct: 249 -NRLKEMHDAFKLSNPDGVFDLVT------------KSECLQGFYMLRNLIRRNDEVLLD 295
Query: 242 VL--------VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTA 293
+ +KA A + LA + G+ + S ++ +K
Sbjct: 296 DIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA---NN 352
Query: 294 LHVAAYFGQADTVRELLSH 312
++ G+ D L H
Sbjct: 353 YYINETGGRLDLRAVALEH 371
Score = 85.0 bits (210), Expect = 1e-17
Identities = 34/207 (16%), Positives = 51/207 (24%), Gaps = 29/207 (14%)
Query: 446 ARYGHVGIINTLLQKGEKVDVTTNNLA--CGHVTVVGLLLSRAADLLQSADKNGKTCLHI 503
+ I+ L + ++ L H L + +
Sbjct: 42 MTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLW---SDAHKKGIKSEVICFV 98
Query: 504 AATHGH---LQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYA 560
AA G L + +LL + A LAA NG+
Sbjct: 99 AAITGCSSALDTLCLLLTSDEIVKVIQAE-----------------NYQAFRLAAENGHL 141
Query: 561 DLCRFLVHDHAAVIDILTLRK-QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK--- 616
+ L I + + LAAE G L V L +L + Q +
Sbjct: 142 HVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA 201
Query: 617 PIHVAAQNNFPEVAQIFLRAHPSLVTA 643
A V L L A
Sbjct: 202 FRWAAVGRGHHNVINFLLDCPVMLAYA 228
Score = 67.3 bits (164), Expect = 8e-12
Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 14/166 (8%)
Query: 508 GHLQMVEVLLGQGAEINATDKVCDALLTHK--------AFINSKSRVGRTALHLAAMNGY 559
+ + + + L + ++ H + + K +AA+ G
Sbjct: 45 SYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGC 104
Query: 560 A---DLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD--DQG 614
+ D L+ ++ ++ LAAE G L V L +L + +
Sbjct: 105 SSALDTLCLLL-TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN 163
Query: 615 QKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIAAGKH 660
+AA+N V P+ TA + + AA
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 209
Score = 44.6 bits (105), Expect = 1e-04
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
L +A G+ +L+ + + + ++ G L + L
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN---YYINETGGRLDLRAVAL 369
Query: 75 THKA 78
H
Sbjct: 370 EHHH 373
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 146 bits (371), Expect = 1e-39
Identities = 57/301 (18%), Positives = 93/301 (30%), Gaps = 70/301 (23%)
Query: 336 GMTPLHLAAYSGNENVVRLLL-----NSAGVQVDAQTQ-ENGYNPLHLA---CFGGHVTV 386
L G + LL NS + A T+ G L A G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 387 VGLLLSRAADL----------LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDK 436
+ LL D G + LHIA LQ V++L+ GA+++
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 437 GGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKN 496
G H +
Sbjct: 122 GRFFQKHQG----------------------------------------------TCFYF 135
Query: 497 GKTCLHIAATHGHLQMVEVLL---GQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
G+ L +AA +V LL Q A + ATD + + +L H + + + +AL +
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL-HALVMIADNSPENSALVI 194
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 613
+G + L + +I + TPL LAA+ G++++ + +L S A
Sbjct: 195 HMYDGLLQMGARLCP-TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHH 253
Query: 614 G 614
Sbjct: 254 H 254
Score = 139 bits (352), Expect = 4e-37
Identities = 50/264 (18%), Positives = 84/264 (31%), Gaps = 46/264 (17%)
Query: 292 TALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA---YSGN 348
L G + + LL ++ K + +G T L A G
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSA-----YTEGSTGKTCLMKAVLNLQDGV 58
Query: 349 ENVVRLLLNSA------GVQVDAQTQE---NGYNPLHLACFGGHVTVVGLLLSRAADL-- 397
+ LL V+AQ + G++ LH+A + V LL+ AD+
Sbjct: 59 NACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL 118
Query: 398 ----------LQSADKNGKTCLHIAATHGHLQMVEVLL---GQGAEINATDKGGARSIHT 444
+ G+ L +AA +V LL Q A + ATD G +H
Sbjct: 119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHA 178
Query: 445 AARYGHVGIINTLLQKGEKVDVTTNNLAC--GHVTVVGLLLSRAADLLQSADKNGKTCLH 502
N+ L + G + + L + ++ G T L
Sbjct: 179 LVMIADNSPENSALV-----------IHMYDGLLQMGARLCPTVQLE-EISNHQGLTPLK 226
Query: 503 IAATHGHLQMVEVLLGQGAEINAT 526
+AA G +++ +L + A
Sbjct: 227 LAAKEGKIEIFRHILQREFSGAAA 250
Score = 135 bits (341), Expect = 1e-35
Identities = 51/253 (20%), Positives = 74/253 (29%), Gaps = 45/253 (17%)
Query: 259 TAVHLAAQNGHNQVLEE-----MRSSKALNVYSK---KLGVTALHVAA---YFGQADTVR 307
+ G + L +SK L + G T L A G +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 308 ELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 367
LL + P A E G + LH+A + V+LL+ G V +
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDE--FYQGHSALHIAIEKRSLQCVKLLV-ENGADVHLRA 120
Query: 368 QEN------------GYNPLHLACFGGHVTVVGLLLSRAADL--LQSADKNGKTCLHIAA 413
G PL LA VV LL L++ D G T LH
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180
Query: 414 TH----------------GHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTL 457
G LQM L ++ G + AA+ G + I +
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240
Query: 458 LQKGEKVDVTTNN 470
LQ+ ++
Sbjct: 241 LQREFSGA-AAHH 252
Score = 127 bits (321), Expect = 6e-33
Identities = 51/282 (18%), Positives = 81/282 (28%), Gaps = 63/282 (22%)
Query: 54 GRSALHLAAEHGYLKVCDALLTH--------KAFINSKSRVGRTALHLAAMN---GYADL 102
R L G + LL + ++ G+T L A +N G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 103 CRFLVHDHAAVIDILTL----------RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 152
L+ + L + + LH+A E LQ KLL++ GA +
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 153 -------------QGQKPIHVAAQNNFPEVAQIFLRAHPSL--VTATTKDGNTCAHIAAM 197
G+ P+ +AA +V L + AT GNT H M
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181
Query: 198 QGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTG 257
+ E + L + G + L N G
Sbjct: 182 IA--------------------DNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQG 221
Query: 258 FTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAY 299
T + LAA+ G ++ + + G A H +
Sbjct: 222 LTPLKLAAKEGKIEIFRHILQREF-------SGAAAHHHHHH 256
Score = 127 bits (320), Expect = 8e-33
Identities = 44/284 (15%), Positives = 80/284 (28%), Gaps = 62/284 (21%)
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA-----TPLQLAA---EGGHANV 239
+G + L+++ R + T L A + G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 240 VRVLVKAG-----------ASCTDENKTGFTAVHLAAQNGHNQVLE-------------E 275
+ L++ A CTDE G +A+H+A + Q ++
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 276 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 335
R + G L +AA Q D V LL + + E
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN--PHQPASL--------EATDSL 171
Query: 336 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA 395
G T LH + + + L + + G + + L
Sbjct: 172 GNTVLHALVMIADNS-------------------PENSALVIHMYDGLLQMGARLCPTVQ 212
Query: 396 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGA 439
+ ++ G T L +AA G +++ +L + A
Sbjct: 213 LE-EISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
Score = 111 bits (278), Expect = 3e-27
Identities = 36/256 (14%), Positives = 65/256 (25%), Gaps = 50/256 (19%)
Query: 405 GKTCLHIAATHGHLQMVEVLL--------GQGAEINATDKGGARSIHTAA---RYGHVGI 453
+ L + G + + LL G + A + G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 454 INTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMV 513
I LLQ + + G + LHIA LQ V
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQ---------------CTDEFYQGHSALHIAIEKRSLQCV 106
Query: 514 EVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV--HDHA 571
++L+ GA+++ G L LAA D+ +L+
Sbjct: 107 KLLVENGADVHLRACGRFFQKHQGTCFYF----GELPLSLAACTKQWDVVTYLLENPHQP 162
Query: 572 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQ 631
A ++ T LH + A + + + + ++
Sbjct: 163 ASLEATDSLGNTVLHALV-----------------MIADNSPENSALVIHMYDGLLQMGA 205
Query: 632 IFLRAHPSLVTATTKE 647
L L + +
Sbjct: 206 -RLCPTVQLEEISNHQ 220
Score = 89.5 bits (222), Expect = 7e-20
Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 21/155 (13%)
Query: 3 EQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNH---ARVDVFDQEGRSALH 59
+ G K G PL +A ++V +L N A ++ D G + LH
Sbjct: 118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH 177
Query: 60 LAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTL 119
+ + + +AL + +G + L + +I
Sbjct: 178 ALV-----------------MIADNSPENSALVIHMYDGLLQMGARLCP-TVQLEEISNH 219
Query: 120 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQG 154
+ TPL LAA+ G++++ + +L S A
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 143 bits (362), Expect = 3e-39
Identities = 45/220 (20%), Positives = 72/220 (32%), Gaps = 52/220 (23%)
Query: 363 VDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVE 422
+ ++T G + GH AAD+ +T AA Q +
Sbjct: 6 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALS 61
Query: 423 VLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLL 482
LL + +++A D+ G ++ A G + L + G
Sbjct: 62 QLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG--------------------- 99
Query: 483 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINS 542
ADL + G T LH+AA + ++VE L+ GA+I D+
Sbjct: 100 ----ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE-------------- 141
Query: 543 KSRVGRTALHLAAMNGYADLCRFLVH-----DHAAVIDIL 577
G TAL LA + VI++L
Sbjct: 142 ---RGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVL 178
Score = 141 bits (357), Expect = 1e-38
Identities = 45/211 (21%), Positives = 68/211 (32%), Gaps = 47/211 (22%)
Query: 401 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQK 460
G I GH A++ + + TAAR ++ LL +
Sbjct: 10 TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQLL-E 65
Query: 461 GEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 520
VD + D+NG+T L A G + V +L G
Sbjct: 66 DRDVD--------------------------AVDENGRTALLFVAGLGSDKCVRLLAEAG 99
Query: 521 AEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR 580
A+++ D R G TALH+AA ++ LV + A I++ R
Sbjct: 100 ADLDHRD----------------MRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDER 142
Query: 581 KQTPLHLAAEAGQLQVCKLLLDLGASIDATD 611
T L LA E + + G I
Sbjct: 143 GLTALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 139 bits (353), Expect = 5e-38
Identities = 43/196 (21%), Positives = 64/196 (32%), Gaps = 28/196 (14%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
G + G + + TP AA +E
Sbjct: 14 GAMEYLIEWKDGHSPSWVPSSYI----------------AADVVSEYETPWWTAARKADE 57
Query: 350 NVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
+ LL VDA ENG L G V LL ADL + G T L
Sbjct: 58 QALSQLL--EDRDVDAVD-ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 114
Query: 410 HIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTN 469
H+AA + ++VE L+ GA+I D+ G ++ A +Q G ++
Sbjct: 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI----- 169
Query: 470 NLACGHVTVVGLLLSR 485
G V+ +L +
Sbjct: 170 ----GLEKVINVLEGQ 181
Score = 138 bits (351), Expect = 1e-37
Identities = 41/225 (18%), Positives = 64/225 (28%), Gaps = 52/225 (23%)
Query: 211 DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN 270
+ + +I +R A + + GH+ A D T AA+
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA---DVVSEYETPWWTAARKAD- 56
Query: 271 QVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGE 330
+ +LL +
Sbjct: 57 --------------------------------EQALSQLLE------------DRDV--D 70
Query: 331 LGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLL 390
E+G T L A G++ VRLL AG +D + G LH+A VV L
Sbjct: 71 AVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129
Query: 391 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATD 435
+ AD ++ D+ G T L +A + G I
Sbjct: 130 VELGAD-IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 137 bits (348), Expect = 2e-37
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 7/168 (4%)
Query: 9 EISKAL-NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYL 67
E++K + ++ G LI GH A V E + AA
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADE 57
Query: 68 KVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR-KQTPLH 126
+ LL +++ GRTAL A G R L + A +D +R T LH
Sbjct: 58 QALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALH 115
Query: 127 LAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 174
+AA + +V + L++LGA I+ D++G + +A + +
Sbjct: 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 163
Score = 125 bits (317), Expect = 3e-33
Identities = 42/209 (20%), Positives = 68/209 (32%), Gaps = 49/209 (23%)
Query: 427 QGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRA 486
+ T GA + GH A
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWK-------------------------DGHSPSWVPSSYIA 37
Query: 487 ADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRV 546
AD+ +T AA Q + LL + +++A D+
Sbjct: 38 ADV----VSEYETPWWTAARKADEQALSQLL-EDRDVDAVDEN----------------- 75
Query: 547 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLR-KQTPLHLAAEAGQLQVCKLLLDLGA 605
GRTAL A G R L + A +D +R T LH+AA + +V + L++LGA
Sbjct: 76 GRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 134
Query: 606 SIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
I+ D++G + +A + +
Sbjct: 135 DIEVEDERGLTALELAREILKTTPKGNPM 163
Score = 115 bits (291), Expect = 1e-29
Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 3/132 (2%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
TP A + + ++ +L VD D+ GR+AL A G K L A +
Sbjct: 44 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102
Query: 81 NSK-SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 139
+ + R G TALH+AA ++ LV + A I++ R T L LA E +
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDERGLTALELAREILKTTPKGN 161
Query: 140 LLDLGASIDATD 151
+ G I
Sbjct: 162 PMQFGRRIGLEK 173
Score = 115 bits (290), Expect = 1e-29
Identities = 38/237 (16%), Positives = 65/237 (27%), Gaps = 58/237 (24%)
Query: 77 KAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQV 136
K + + G + +G++ + A V+ +TP AA Q
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTAARKADEQA 59
Query: 137 CKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAA 196
LL+ +DA D+ G+ + A + ++
Sbjct: 60 LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLA---------------------- 96
Query: 197 MQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKT 256
G + R+ T L +AA VV LV+ GA E++
Sbjct: 97 ---EAGAD-----------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 142
Query: 257 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 313
G TA+ LA + + G + L V
Sbjct: 143 GLTALELAREILKTTPKG-----------------NPMQFGRRIGLEKVINVLEGQV 182
Score = 92.9 bits (232), Expect = 7e-22
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 6/109 (5%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQE-GRSALHLAAEHGYLKVCDAL 73
+ G T LL G + V + A +D D G +ALH+AA + +V +AL
Sbjct: 70 DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVH-----DHAAVIDIL 117
+ A I + G TAL LA + VI++L
Sbjct: 130 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVL 178
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 139 bits (354), Expect = 6e-39
Identities = 65/127 (51%), Positives = 89/127 (70%), Gaps = 3/127 (2%)
Query: 335 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRA 394
+G TPLHLAA +G+ VV+LLL AG V+A+ +NG PLHLA GH+ VV LLL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 395 ADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGII 454
AD + + DKNG+T LH+AA +GHL++V++LL GA++NA DK G +H AAR GH+ ++
Sbjct: 59 AD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 455 NTLLQKG 461
LL+ G
Sbjct: 118 KLLLEAG 124
Score = 129 bits (328), Expect = 2e-35
Identities = 68/152 (44%), Positives = 91/152 (59%), Gaps = 27/152 (17%)
Query: 370 NGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 429
NG PLHLA GH+ VV LLL AD+ + DKNG+T LH+AA +GHL++V++LL GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 430 EINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADL 489
++NA DK G +H AAR GH+ VV LLL AD
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLE-------------------------VVKLLLEAGAD- 93
Query: 490 LQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
+ + DKNG+T LH+AA +GHL++V++LL GA
Sbjct: 94 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 129 bits (326), Expect = 4e-35
Identities = 62/164 (37%), Positives = 91/164 (55%), Gaps = 43/164 (26%)
Query: 404 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEK 463
NG+T LH+AA +GHL++V++LL GA++NA DK G +H AAR GH+ ++ LL+ G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 464 VDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEI 523
V+ DKNG+T LH+AA +GHL++V++LL GA++
Sbjct: 61 VNA--------------------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94
Query: 524 NATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV 567
NA DK GRT LHLAA NG+ ++ + L+
Sbjct: 95 NAKDK-----------------NGRTPLHLAARNGHLEVVKLLL 121
Score = 126 bits (320), Expect = 2e-34
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 16/140 (11%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
G T LH+AA G + V+ LL GA ++G TPLHLAA +G+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA-----------GADV--NAKDKNGRTPLHLAARNGHL 48
Query: 350 NVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
VV+LLL AG V+A+ +NG PLHLA GH+ VV LLL AD + + DKNG+T L
Sbjct: 49 EVVKLLL-EAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPL 105
Query: 410 HIAATHGHLQMVEVLLGQGA 429
H+AA +GHL++V++LL GA
Sbjct: 106 HLAARNGHLEVVKLLLEAGA 125
Score = 122 bits (309), Expect = 8e-33
Identities = 59/144 (40%), Positives = 88/144 (61%), Gaps = 20/144 (13%)
Query: 496 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAA 555
NG+T LH+AA +GHL++V++LL GA++NA DK GRT LHLAA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-----------------GRTPLHLAA 43
Query: 556 MNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 615
NG+ ++ + L+ + A ++ +TPLHLAA G L+V KLLL+ GA ++A D G+
Sbjct: 44 RNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 102
Query: 616 KPIHVAAQNNFPEVAQIFLR--AH 637
P+H+AA+N EV ++ L A+
Sbjct: 103 TPLHLAARNGHLEVVKLLLEAGAY 126
Score = 117 bits (296), Expect = 4e-31
Identities = 56/125 (44%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G TPL +A GH+E+V +L A V+ D+ GR+ LHLAA +G+L+V LL A +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
N+K + GRT LHLAA NG+ ++ + L+ + A ++ +TPLHLAA G L+V KLL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 141 LDLGA 145
L+ GA
Sbjct: 121 LEAGA 125
Score = 101 bits (254), Expect = 2e-25
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 16/136 (11%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAA GH VV++L++AGA ++K G T +HLAA+NGH +V++ + + A +V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVN 62
Query: 286 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 344
+K K G T LH+AA G + V+ LL GA ++G TPLHLAA
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEA-----------GADV--NAKDKNGRTPLHLAA 109
Query: 345 YSGNENVVRLLLNSAG 360
+G+ VV+LLL AG
Sbjct: 110 RNGHLEVVKLLL-EAG 124
Score = 99.3 bits (249), Expect = 1e-24
Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 37/153 (24%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
+TPLHLAA G L+V KLLL+ GA ++A D G+ P+H+AA+N EV ++ L + V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADV 61
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
A K+G TPL LAA GH VV+
Sbjct: 62 NAKDKNGR------------------------------------TPLHLAARNGHLEVVK 85
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 274
+L++AGA ++K G T +HLAA+NGH +V++
Sbjct: 86 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Score = 90.5 bits (226), Expect = 1e-21
Identities = 40/93 (43%), Positives = 59/93 (63%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N + G TPL +A GH+E+V +L A V+ D+ GR+ LHLAA +G+L+V LL
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLV 107
A +N+K + GRT LHLAA NG+ ++ + L+
Sbjct: 89 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 86.2 bits (215), Expect = 4e-20
Identities = 49/128 (38%), Positives = 80/128 (62%), Gaps = 7/128 (5%)
Query: 187 DGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVK 245
+G T H+AA G + V++ L++ +G ++A+++ TPL LAA GH VV++L++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLE 56
Query: 246 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQAD 304
AGA ++K G T +HLAA+NGH +V++ + + A +V +K K G T LH+AA G +
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLE 115
Query: 305 TVRELLSH 312
V+ LL
Sbjct: 116 VVKLLLEA 123
Score = 60.4 bits (148), Expect = 3e-11
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N + G TPL +A GH+E+V +L A V+ D+ GR+ LHLAA +G+L+V LL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 75 THKAF 79
A+
Sbjct: 122 EAGAY 126
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 147 bits (371), Expect = 6e-39
Identities = 47/336 (13%), Positives = 94/336 (27%), Gaps = 33/336 (9%)
Query: 292 TALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENV 351
D + LS +K+ P + L + + +
Sbjct: 21 DRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVN--DNEQKMKLEAFLQRLLFPEIQEM 78
Query: 352 VRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHI 411
L N+ +++ + H++ V + +L D++G T LH
Sbjct: 79 PTSL-NNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW 137
Query: 412 AATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNL 471
+ +L++V+ L+ G+ D G + A + +
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN--------------------- 176
Query: 472 ACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCD 531
LL L D +T LH + A D +
Sbjct: 177 -NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSA-----AAKYYLDILMG 230
Query: 532 ALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV---HDHAAVIDILTLRKQTPLHLA 588
++ + + + D + A +++ T L++A
Sbjct: 231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 290
Query: 589 AEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 624
A G + + LLD GA + G +P+ A
Sbjct: 291 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326
Score = 114 bits (286), Expect = 9e-28
Identities = 43/272 (15%), Positives = 87/272 (31%), Gaps = 21/272 (7%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLK-VCDAL 73
N+Q L E+ ++ N+ + + + L+ V DA
Sbjct: 57 NEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF 116
Query: 74 LTHKAFINSKS-RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAG 132
+ +N G T LH +L + LV H + ++ L A ++
Sbjct: 117 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSV 175
Query: 133 ----QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN-----------FPEVAQIFLRAH 177
LL L + D + +H + + ++ ++
Sbjct: 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235
Query: 178 PSLVTATTKDGNTCAHIAAMQGSVGVIEELM--KFDRSGVISARNRVTEATPLQLAAEGG 235
+ + + I E + K+ + +++A++ T L +AA G
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS-NGDTCLNIAARLG 294
Query: 236 HANVVRVLVKAGASCTDENKTGFTAVHLAAQN 267
+ ++V L+ GA NK+G V A
Sbjct: 295 NISIVDALLDYGADPFIANKSGLRPVDFGAGL 326
Score = 106 bits (266), Expect = 3e-25
Identities = 50/319 (15%), Positives = 95/319 (29%), Gaps = 63/319 (19%)
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 203
+ + + + + E+ L S + N + +
Sbjct: 53 VVNDNEQKMKLEAFLQRLLFPEIQEMPT-SLNNDSSNRNSEGGSSNQQQQHVSFDSLLQE 111
Query: 204 IEEL---------MKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN 254
+ + + D G TPL + +V+ LVK G++ +
Sbjct: 112 VNDAFPNTQLNLNIPVDEHG----------NTPLHWLTSIANLELVKHLVKHGSNRLYGD 161
Query: 255 KTGFTAVHLAAQNGHN---QVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELL 310
G + + A ++ +N E + + + + T LH
Sbjct: 162 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII------------ 209
Query: 311 SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 370
SGMT AA + ++ ++ + + T N
Sbjct: 210 ----------------------ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT--N 245
Query: 371 GYNPLHLACFGGHVTVVGLLLSRAADLLQ---SADKNGKTCLHIAATHGHLQMVEVLLGQ 427
G + L + + D NG TCL+IAA G++ +V+ LL
Sbjct: 246 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY 305
Query: 428 GAEINATDKGGARSIHTAA 446
GA+ +K G R + A
Sbjct: 306 GADPFIANKSGLRPVDFGA 324
Score = 64.7 bits (157), Expect = 4e-11
Identities = 14/89 (15%), Positives = 31/89 (34%)
Query: 7 GTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGY 66
++ + +E ++ ++ D G + L++AA G
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 295
Query: 67 LKVCDALLTHKAFINSKSRVGRTALHLAA 95
+ + DALL + A ++ G + A
Sbjct: 296 ISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 63.5 bits (154), Expect = 8e-11
Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 1/108 (0%)
Query: 519 QGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAM-NGYADLCRFLVHDHAAVIDIL 577
Q ++ +L + NS+ + + ++ + + +
Sbjct: 68 QRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV 127
Query: 578 TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN 625
TPLH L++ K L+ G++ D+ G+ + A ++
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 175
Score = 59.7 bits (144), Expect = 1e-09
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 6 SGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAE 63
I+ LN Q S G T L IA G++ +V+ +L+ A + ++ G + A
Sbjct: 268 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 135 bits (341), Expect = 2e-36
Identities = 30/203 (14%), Positives = 55/203 (27%), Gaps = 27/203 (13%)
Query: 333 SESGMTPLHLAAYSGNENVVRLLLNS-AGVQVDAQTQENGYNPLHLACFGGHVTVVGLLL 391
+ S + AA G L + Y+ L + L+
Sbjct: 3 AMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI 62
Query: 392 SRAADLLQSADKNGKTCLHIAATHGH------LQMVEVLLGQGAEINATDKGGARSIHTA 445
++ AD+ +S K G T G ++ ++ L +GA+I A K +
Sbjct: 63 NKGADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121
Query: 446 ARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAA 505
V + + LL DK G T L
Sbjct: 122 IFNYFVDENEMIP------------------LYKLIFSQSGLQLL-IKDKWGLTALEFVK 162
Query: 506 THGHLQMVEVLLGQGAEINATDK 528
++++ + N +
Sbjct: 163 RCQKPIALKMMEDYIKKYNLKEN 185
Score = 124 bits (314), Expect = 7e-33
Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 40/219 (18%)
Query: 400 SADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQ 459
S + + AA G + L +G E + ++ R +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKE-SVLKSNILYDVLRNNNDE------- 52
Query: 460 KGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQ 519
+ L+++ AD+ +S K G T G
Sbjct: 53 --------------ARYKISMFLINKGADI-KSRTKEGTTLFFPLFQGGGN--------- 88
Query: 520 GAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYAD------LCRFLVHDHAAV 573
+I T ++C L A I + + + + N + D L + +
Sbjct: 89 --DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ 146
Query: 574 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 612
+ I T L + K++ D + ++
Sbjct: 147 LLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
Score = 123 bits (311), Expect = 2e-32
Identities = 26/213 (12%), Positives = 60/213 (28%), Gaps = 41/213 (19%)
Query: 370 NGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATH-----GHLQMVEVL 424
+ Y + A G L + + + K+ + ++ L
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFL 61
Query: 425 LGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLS 484
+ +GA+I + K G + G I T + + L
Sbjct: 62 INKGADIKSRTKEGTTLFFPLFQGGGNDITGT-------------------TELCKIFLE 102
Query: 485 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHK-AFINSK 543
+ AD + + K K + + + E++ + + + + K
Sbjct: 103 KGAD-ITALYKPYKIVVFKNIFNYFVDENEMI-----------PLYKLIFSQSGLQLLIK 150
Query: 544 SRVGRTALHLAAMNGYADLCRFLVHDHAAVIDI 576
+ G TAL + + D+ ++
Sbjct: 151 DKWGLTALEFVKRCQKPIALKMME-DYIKKYNL 182
Score = 123 bits (310), Expect = 3e-32
Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 26/192 (13%)
Query: 292 TALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENV 351
+ AA G + EL G + L S L +
Sbjct: 8 RTVSAAAMLGTYEDFLELFEK--GYEDKES--------VLKSNILYDVLRNNNDEARYKI 57
Query: 352 VRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVG------LLLSRAADLLQSADKNG 405
L+ + G + ++T + G GG + G + L + AD+ + K
Sbjct: 58 SMFLI-NKGADIKSRT-KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPY 114
Query: 406 KTCLHIAATHGHL------QMVEVLLGQ-GAEINATDKGGARSIHTAARYGHVGIINTLL 458
K + + + + +++ Q G ++ DK G ++ R + +
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174
Query: 459 QKGEKVDVTTNN 470
+K ++ N+
Sbjct: 175 DYIKKYNLKENS 186
Score = 119 bits (299), Expect = 9e-31
Identities = 26/198 (13%), Positives = 51/198 (25%), Gaps = 32/198 (16%)
Query: 255 KTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKK--LGVTALHVAAYFGQADTVRELLS 311
+ + V AA G + E+ K + L + L++
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 312 HVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENV------VRLLLNSAGVQVDA 365
GA + ++ G T G ++ ++ L G + A
Sbjct: 64 K-----------GADI--KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL-EKGADITA 109
Query: 366 QTQENGYNPLHLACFGGHVTVVG-------LLLSRAADLLQSADKNGKTCLHIAATHGHL 418
+ + F V + LL DK G T L
Sbjct: 110 LY-KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-IKDKWGLTALEFVKRCQKP 167
Query: 419 QMVEVLLGQGAEINATDK 436
++++ + N +
Sbjct: 168 IALKMMEDYIKKYNLKEN 185
Score = 112 bits (281), Expect = 2e-28
Identities = 24/182 (13%), Positives = 50/182 (27%), Gaps = 22/182 (12%)
Query: 11 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQE---GRSALHLAAEHGYL 67
S A+++ + + A G E + + L +
Sbjct: 1 SNAMSE-----YRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARY 55
Query: 68 KVCDALLTHKAFINSKSRVGRTALHLAAMNGYAD------LCRFLVHDHAAVIDILTLRK 121
K+ L+ A I S+++ G T G D LC+ + + A I L
Sbjct: 56 KISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL-EKGADITALYKPY 114
Query: 122 QTPLHLAAEAGQLQVCK-------LLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 174
+ + + + + G + D G + + P ++
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174
Query: 175 RA 176
Sbjct: 175 DY 176
Score = 108 bits (271), Expect = 4e-27
Identities = 20/153 (13%), Positives = 48/153 (31%), Gaps = 12/153 (7%)
Query: 12 KALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV-- 69
K +++I + L + ++ ++N A + +EG + + G +
Sbjct: 33 KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITG 92
Query: 70 ----CDALLTHKAFINSKSRVGRTALHLAAMNGYAD------LCRFLVHDHAAVIDILTL 119
C L A I + + + + N + D L + + + I
Sbjct: 93 TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK 152
Query: 120 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 152
T L + K++ D + ++
Sbjct: 153 WGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
Score = 98.2 bits (245), Expect = 1e-23
Identities = 24/179 (13%), Positives = 53/179 (29%), Gaps = 13/179 (7%)
Query: 82 SKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRK--QTPLHLAAEAGQLQVCKL 139
S + + AAM G + L + + L + + ++
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60
Query: 140 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL-----VTATTKDGNTCAHI 194
L++ GA I + +G Q ++ L +TA K
Sbjct: 61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120
Query: 195 AAMQGSVGVIEEL----MKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 248
V E + + F +SG+ + +++ T L+ ++++
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK-WGLTALEFVKRCQKPIALKMMEDYIK 178
Score = 94.7 bits (236), Expect = 2e-22
Identities = 29/197 (14%), Positives = 53/197 (26%), Gaps = 30/197 (15%)
Query: 492 SADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTAL 551
S + + AA G + L +G E KS + L
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKE--------------SVLKSNILYDVL 46
Query: 552 HLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQV------CKLLLDLGA 605
+ FL+ + A I T T + G + CK+ L+ GA
Sbjct: 47 RNNNDEARYKISMFLI-NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA 105
Query: 606 SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL------VTATTKEKERAKDLIAAGK 659
I A + + N F + ++ + K A + + +
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165
Query: 660 HCEGMATELLALAAGAD 676
A +++
Sbjct: 166 KPI--ALKMM-EDYIKK 179
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 131 bits (331), Expect = 1e-35
Identities = 39/129 (30%), Positives = 48/129 (37%), Gaps = 5/129 (3%)
Query: 334 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSR 393
S L AA G VR LL AG +A G P+ + G V LLL
Sbjct: 10 GSSDAGLATAAARGQVETVRQLL-EAGADPNALN-RFGRRPIQVMMMG-SAQVAELLLLH 66
Query: 394 AADLLQSADKNGKTC-LHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVG 452
A+ AD T +H AA G L + VL GA ++ D G + A GH
Sbjct: 67 GAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRD 125
Query: 453 IINTLLQKG 461
I L
Sbjct: 126 IARYLHAAT 134
Score = 128 bits (324), Expect = 1e-34
Identities = 36/164 (21%), Positives = 56/164 (34%), Gaps = 30/164 (18%)
Query: 359 AGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHL 418
+ + L A G V V LL AD + ++ G+ + + G
Sbjct: 1 GSPGIHMLG-GSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMM-MGSA 57
Query: 419 QMVEVLLGQGAEINATDK-GGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVT 477
Q+ E+LL GAE N D R +H AAR G + + L + G ++DV
Sbjct: 58 QVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV----------- 106
Query: 478 VVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
D G+ + +A GH + L
Sbjct: 107 ---------------CDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 126 bits (319), Expect = 5e-34
Identities = 41/168 (24%), Positives = 56/168 (33%), Gaps = 45/168 (26%)
Query: 401 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQK 460
+ L AA G ++ V LL GA+ NA ++ G R I
Sbjct: 8 LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM------------- 54
Query: 461 GEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTC-LHIAATHGHLQMVEVLLGQ 519
G V LLL A+ AD T +H AA G L + VL
Sbjct: 55 -------------GSAQVAELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRA 100
Query: 520 GAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV 567
GA ++ D GR + LA G+ D+ R+L
Sbjct: 101 GARLDVCDA-----------------WGRLPVDLAEEQGHRDIARYLH 131
Score = 121 bits (307), Expect = 2e-32
Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 16/140 (11%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
L AA GQ +TVR+LL GA + G P+ + G+
Sbjct: 12 SDAGLATAAARGQVETVRQLLEA-----------GADP--NALNRFGRRPIQVMMM-GSA 57
Query: 350 NVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
V LLL G + + P+H A G + + +L A L D G+ +
Sbjct: 58 QVAELLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPV 115
Query: 410 HIAATHGHLQMVEVLLGQGA 429
+A GH + L
Sbjct: 116 DLAEEQGHRDIARYLHAATG 135
Score = 117 bits (296), Expect = 5e-31
Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 20/145 (13%)
Query: 493 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALH 552
+ L AA G ++ V LL GA+ NA ++ GR +
Sbjct: 8 LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRF-----------------GRRPIQ 50
Query: 553 LAAMNGYADLCRFLVHDHAAVIDILTLRKQT-PLHLAAEAGQLQVCKLLLDLGASIDATD 611
+ G A + L+ H A + T P+H AA G L +L GA +D D
Sbjct: 51 VMM-MGSAQVAELLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD 108
Query: 612 DQGQKPIHVAAQNNFPEVAQIFLRA 636
G+ P+ +A + ++A+ A
Sbjct: 109 AWGRLPVDLAEEQGHRDIARYLHAA 133
Score = 116 bits (294), Expect = 1e-30
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 3/132 (2%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ L A RG +E V +L A + ++ GR + + G +V + LL
Sbjct: 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLL 64
Query: 75 THKAFINSKSRVGRT-ALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 133
H A N T +H AA G+ D L A +D+ + P+ LA E G
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-RAGARLDVCDAWGRLPVDLAEEQGH 123
Query: 134 LQVCKLLLDLGA 145
+ + L
Sbjct: 124 RDIARYLHAATG 135
Score = 114 bits (288), Expect = 6e-30
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 3/133 (2%)
Query: 45 ARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCR 104
+ + + L AA G ++ LL A N+ +R GR + + G A +
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAE 61
Query: 105 FLVHDHAAVIDILTLRKQT-PLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQ 163
L+ H A + T P+H AA G L +L GA +D D G+ P+ +A +
Sbjct: 62 LLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 164 NNFPEVAQIFLRA 176
++A+ A
Sbjct: 121 QGHRDIARYLHAA 133
Score = 102 bits (258), Expect = 8e-26
Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 19/153 (12%)
Query: 246 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQAD 304
+ + AA G + + ++ + A + + + G + V G A
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGA-DPNALNRFGRRPIQVMMM-GSAQ 58
Query: 305 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMT-PLHLAAYSGNENVVRLLLNSAGVQV 363
LL H GA + +T P+H AA G + + +L AG ++
Sbjct: 59 VAELLLLH-----------GAEP--NCADPATLTRPVHDAAREGFLDTLVVLH-RAGARL 104
Query: 364 DAQTQENGYNPLHLACFGGHVTVVGLLLSRAAD 396
D G P+ LA GH + L + D
Sbjct: 105 DVCD-AWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 101 bits (255), Expect = 2e-25
Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 37/168 (22%)
Query: 114 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
I +L L AA GQ++ + LL+ GA +A + G++PI V + +VA+
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA-QVAE-L 62
Query: 174 LRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAE 233
L H + T P+ AA
Sbjct: 63 LLLHGAEPNCADPATLT-----------------------------------RPVHDAAR 87
Query: 234 GGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 281
G + + VL +AGA + G V LA + GH + + ++
Sbjct: 88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 62.1 bits (152), Expect = 1e-11
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 574 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 633
I +L L AA GQ++ + LL+ GA +A + G++PI V + +VA++
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA-QVAELL 63
Query: 634 L 634
L
Sbjct: 64 L 64
Score = 36.3 bits (85), Expect = 0.013
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 7/74 (9%)
Query: 604 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDL-IAAGKHCE 662
I + AA E + L A A + R + + +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRP--IQVMMMGSAQ 58
Query: 663 GMATELLALAAGAD 676
ELL L GA+
Sbjct: 59 --VAELL-LLHGAE 69
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 129 bits (328), Expect = 3e-35
Identities = 39/173 (22%), Positives = 61/173 (35%), Gaps = 44/173 (25%)
Query: 401 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQK 460
+ G+T LHIA+ G + VE LL G++ N D G +H A +GH+ ++ LLQ
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 461 GEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 520
V+ T + LH AA +GH+ +V++LL G
Sbjct: 66 KALVNTT--------------------------GYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Query: 521 AEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV 573
A NA + G + L + +
Sbjct: 100 ASRNAVNI-----------------FGLRPVDYTDDESMKSLLLLPEK-NESS 134
Score = 129 bits (328), Expect = 3e-35
Identities = 42/164 (25%), Positives = 62/164 (37%), Gaps = 28/164 (17%)
Query: 363 VDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVE 422
+D T G LH+A G + V LL +D D G T LH A HGHL++VE
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 423 VLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLL 482
+LL A +N T +H AA+ GHV +V LL
Sbjct: 61 LLLQHKALVNTTGYQNDSPLHDAAKN-------------------------GHVDIVKLL 95
Query: 483 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINAT 526
LS A + + G + ++ + + +A+
Sbjct: 96 LSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES-SSAS 137
Score = 128 bits (324), Expect = 9e-35
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 18/143 (12%)
Query: 493 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALH 552
+ G+T LHIA+ G + VE LL G++ N D G T LH
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHA-----------------GWTPLH 48
Query: 553 LAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 612
A +G+ + L+ H A+++ + +PLH AA+ G + + KLLL GAS +A +
Sbjct: 49 EACNHGHLKVVELLL-QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107
Query: 613 QGQKPIHVAAQNNFPEVAQIFLR 635
G +P+ + + + +
Sbjct: 108 FGLRPVDYTDDESMKSLLLLPEK 130
Score = 120 bits (304), Expect = 6e-32
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 51 DQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDH 110
+ G + LH+A+ G + + LL + + N K G T LH A +G+ + L+ H
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QH 65
Query: 111 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 170
A+++ + +PLH AA+ G + + KLLL GAS +A + G +P+ + +
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125
Query: 171 QIFLR 175
+ +
Sbjct: 126 LLPEK 130
Score = 119 bits (302), Expect = 9e-32
Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 17/152 (11%)
Query: 283 NVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 342
+ ++ G T LH+A+ G +V LL + G+ + +G TPLH
Sbjct: 3 DPFTNHRGETLLHIASIKGDIPSVEYLLQN-----------GSDP--NVKDHAGWTPLHE 49
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
A G+ VV LLL V+ +PLH A GHV +V LLLS A + +
Sbjct: 50 ACNHGHLKVVELLL-QHKALVNTTG-YQNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVN 106
Query: 403 KNGKTCLHIAATHGHLQMVEVLLGQGAEINAT 434
G + ++ + + +A+
Sbjct: 107 IFGLRPVDYTDDESMKSLLLLPEKNES-SSAS 137
Score = 117 bits (296), Expect = 6e-31
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G T L IA +G + V +L N + +V D G + LH A HG+LKV + LL HKA +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
N+ + LH AA NG+ D+ + L+ + A + + + P+ + + L
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLL-SYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128
Query: 141 LDLGASIDAT 150
S A+
Sbjct: 129 EK-NESSSAS 137
Score = 112 bits (282), Expect = 5e-29
Identities = 41/183 (22%), Positives = 65/183 (35%), Gaps = 46/183 (25%)
Query: 428 GAEINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAA 487
G + T+ G +H A+ G + + LLQ G +V
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV--------------------- 38
Query: 488 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVG 547
D G T LH A HGHL++VE+LL A +N T
Sbjct: 39 -----KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ-----------------N 76
Query: 548 RTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 607
+ LH AA NG+ D+ + L+ + A + + + P+ + + L S
Sbjct: 77 DSPLHDAAKNGHVDIVKLLL-SYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK-NESS 134
Query: 608 DAT 610
A+
Sbjct: 135 SAS 137
Score = 104 bits (261), Expect = 3e-26
Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 37/162 (22%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
+T LH+A+ G + + LL G+ + D G P+H A + +V ++ L H +LV
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QHKALV 69
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
T ++ PL AA+ GH ++V+
Sbjct: 70 NTTGYQNDS------------------------------------PLHDAAKNGHVDIVK 93
Query: 242 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALN 283
+L+ GAS N G V +L +++ +
Sbjct: 94 LLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSS 135
Score = 94.4 bits (236), Expect = 7e-23
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N + GWTPL ACN GH+++V +L + A V+ + S LH AA++G++ + LL
Sbjct: 37 NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV 113
++ A N+ + G + L + +
Sbjct: 97 SYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK-NESS 134
Score = 57.0 bits (139), Expect = 9e-10
Identities = 11/68 (16%), Positives = 25/68 (36%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N +PL A GH+++V +L+ A + + G + + +
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129
Query: 75 THKAFINS 82
+++ S
Sbjct: 130 KNESSSAS 137
Score = 29.3 bits (67), Expect = 2.7
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 604 GASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
G T+ +G+ +H+A+ + L
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLL 30
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 127 bits (321), Expect = 3e-34
Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 44/178 (24%)
Query: 393 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVG 452
R + + L AA G V +L+ GA++NA D+ G ++ A +GH+
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61
Query: 453 IINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQM 512
I+ LL+ G V+ D G T LH+AA GHL++
Sbjct: 62 IVEVLLKNGADVNA--------------------------VDAIGFTPLHLAAFIGHLEI 95
Query: 513 VEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV-HD 569
EVLL GA++NA DK G+TA ++ NG DL L +
Sbjct: 96 AEVLLKHGADVNAQDK-----------------FGKTAFDISIGNGNEDLAEILQKLN 136
Score = 122 bits (310), Expect = 6e-33
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 485 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKS 544
R + + L AA G V +L+ GA++NA D+
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEY--------------- 46
Query: 545 RVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 604
G T L+LA +G+ ++ L+ + A ++ + TPLHLAA G L++ ++LL G
Sbjct: 47 --GLTPLYLATAHGHLEIVEVLL-KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Query: 605 ASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
A ++A D G+ ++ N ++A+I
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 119 bits (300), Expect = 1e-31
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 336 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA 395
L AA +G ++ VR+L+ + G V+A+ E G PL+LA GH+ +V +LL A
Sbjct: 14 LGKKLLEAARAGQDDEVRILM-ANGADVNAKD-EYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 396 DLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIIN 455
D + + D G T LH+AA GHL++ EVLL GA++NA DK G + + G+ +
Sbjct: 72 D-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAE 130
Query: 456 TLL 458
L
Sbjct: 131 ILQ 133
Score = 109 bits (274), Expect = 6e-28
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 54 GRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAV 113
L AA G L+ + A +N+K G T L+LA +G+ ++ L+ + A
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-KNGAD 72
Query: 114 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 173
++ + TPLHLAA G L++ ++LL GA ++A D G+ ++ N ++A+I
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Query: 174 L 174
Sbjct: 133 Q 133
Score = 107 bits (270), Expect = 2e-27
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 5 MSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEH 64
M G+ + S LL A G + V ++ N A V+ D+ G + L+LA H
Sbjct: 1 MRGSHH---HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57
Query: 65 GYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTP 124
G+L++ + LL + A +N+ +G T LHLAA G+ ++ L+ H A ++ +T
Sbjct: 58 GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL-KHGADVNAQDKFGKTA 116
Query: 125 LHLAAEAGQLQVCKLLL 141
++ G + ++L
Sbjct: 117 FDISIGNGNEDLAEILQ 133
Score = 92.1 bits (230), Expect = 5e-22
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 87 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 146
L AA G D R L+ + A ++ TPL+LA G L++ ++LL GA
Sbjct: 14 LGKKLLEAARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 147 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEE 206
++A D G P+H+AA E+A+ L H + V A K G T I+ G+ + E
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAE-VLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131
Query: 207 LMKFD 211
L K +
Sbjct: 132 LQKLN 136
Score = 87.1 bits (217), Expect = 2e-20
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 257 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPG 315
+ AA+ G + + + ++ A +V +K + G+T L++A G + V LL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGA-DVNAKDEYGLTPLYLATAHGHLEIVEVLLKN--- 69
Query: 316 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPL 375
GA G TPLHLAA+ G+ + +LL G V+AQ + G
Sbjct: 70 --------GADV--NAVDAIGFTPLHLAAFIGHLEIAEVLL-KHGADVNAQD-KFGKTAF 117
Query: 376 HLACFGGHVTVVGLLLS 392
++ G+ + +L
Sbjct: 118 DISIGNGNEDLAEILQK 134
Score = 85.9 bits (214), Expect = 6e-20
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 187 DGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVK 245
D AA G + LM +G ++A++ TPL LA GH +V VL+K
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMA---NGADVNAKDE-YGLTPLYLATAHGHLEIVEVLLK 68
Query: 246 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQAD 304
GA + GFT +HLAA GH ++ E + A +V ++ K G TA ++ G D
Sbjct: 69 NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA-DVNAQDKFGKTAFDISIGNGNED 127
Query: 305 TVRELLSH 312
L
Sbjct: 128 LAEILQKL 135
Score = 55.5 bits (135), Expect = 3e-09
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N +IG+TPL +A GH+E+ +L + A V+ D+ G++A ++ +G + + L
Sbjct: 74 NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Query: 75 TH 76
Sbjct: 134 KL 135
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 126 bits (318), Expect = 1e-32
Identities = 51/281 (18%), Positives = 89/281 (31%), Gaps = 77/281 (27%)
Query: 338 TPLHLAAYSGN----ENVVRLLLNSAGVQV---DAQTQENGYNPLHLACF---GGHVTVV 387
L G+ E ++ LL + ++ + + G L A G +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLL-THKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65
Query: 388 GLLLSRAADLLQ----------SADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
+LL A G+T LHIA VE+L+ +GA+++A +G
Sbjct: 66 PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125
Query: 438 GARSI--------------HTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLL 483
AA I++ L + G K
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK-------------------- 165
Query: 484 SRAADLLQSADKNGKTCLHIAATHGH---------LQMVEVLLGQGAEINATDKVCDALL 534
AD L+ D G T LH +M ++LL + A++ +
Sbjct: 166 --QAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL----- 217
Query: 535 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVID 575
+A +N+ G + L +AA G + + ++ A
Sbjct: 218 --EALLNND---GLSPLMMAAKTGKIGIFQHIIRREIADAA 253
Score = 109 bits (274), Expect = 1e-26
Identities = 46/259 (17%), Positives = 72/259 (27%), Gaps = 59/259 (22%)
Query: 54 GRSALHLAAEHG----YLKVCDALLTHKAFINSK----SRVGRTALHLAAMN---GYADL 102
R L G + LLTHK + + G+T L A +N G D
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 103 CRFLVHDHAAVIDILTL----------RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 152
L+ ++ R QT LH+A E +LL++ GA + A
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124
Query: 153 Q--------------GQKPIHVAAQNNFPEVAQIFLRAHPSL---VTATTKDGNTCAHIA 195
G+ P+ +AA N P + + + GNT H
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT-ENGHKQADLRRQDSRGNTVLHAL 183
Query: 196 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 255
+ E T L N
Sbjct: 184 VAIA--------------------DNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN 223
Query: 256 TGFTAVHLAAQNGHNQVLE 274
G + + +AA+ G + +
Sbjct: 224 DGLSPLMMAAKTGKIGIFQ 242
Score = 97.9 bits (244), Expect = 9e-23
Identities = 40/235 (17%), Positives = 79/235 (33%), Gaps = 52/235 (22%)
Query: 7 GTEISKALNKQTSIGWTPLLIA---CNRGHMELVNTMLNNHARVDVF-----------DQ 52
++ ++ S G T L A + G + + +L+ +
Sbjct: 32 KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91
Query: 53 EGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAA 112
G++ALH+A E + L+ A +++++R Y
Sbjct: 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFY------------- 138
Query: 113 VIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG---ASIDATDDQGQKPIH--VAAQNNFP 167
+ PL LAA Q + L + G A + D +G +H VA +N
Sbjct: 139 -------FGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTR 191
Query: 168 EVAQIFLRAHPSLV-------------TATTKDGNTCAHIAAMQGSVGVIEELMK 209
E + + + L+ DG + +AA G +G+ + +++
Sbjct: 192 ENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246
Score = 88.7 bits (220), Expect = 1e-19
Identities = 44/272 (16%), Positives = 73/272 (26%), Gaps = 80/272 (29%)
Query: 497 GKTCLHIAATHG----HLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALH 552
+ L + G ++ LL + + + G+T L
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPS-------------TGKTCLP 51
Query: 553 LAAMN---GYADLCRFLVHDHAAVIDILTL----------RKQTPLHLAAEAGQLQVCKL 599
A +N G D L+ ++ R QT LH+A E +L
Sbjct: 52 KALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVEL 111
Query: 600 LLDLGASIDATDDQ--------------GQKPIHVAAQNNFPEVAQIFL-----RAHP-- 638
L++ GA + A G+ P+ +AA N P + +A
Sbjct: 112 LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRR 171
Query: 639 ----------SLVTATTKEKERAKDLIAAGKHCEGMATELLALAAGADSAGRILTATDRR 688
+LV +E K + M LL A + +
Sbjct: 172 QDSRGNTVLHALVAIADNTRENTKFVTK-------MYDLLLIKCAKLFPDTNLEALLNND 224
Query: 689 ------------NIEFLDVLIENEQKEVIAHT 708
I +I E + AH
Sbjct: 225 GLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256
Score = 86.0 bits (213), Expect = 1e-18
Identities = 29/167 (17%), Positives = 50/167 (29%), Gaps = 32/167 (19%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQ--------------EGRSALHLAAEHGY 66
G T L IA R V ++ A V + G L LAA
Sbjct: 93 GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152
Query: 67 LKVCDALLTH---KAFINSKSRVGRTALHLAAMNGYADLCRF--------LVHDHAAVID 115
+ L + +A + + G T LH L+ A +
Sbjct: 153 PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF 212
Query: 116 ILTLRK-------QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 155
T + +PL +AA+ G++ + + ++ + A
Sbjct: 213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 120 bits (304), Expect = 4e-32
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 329 GELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVG 388
G LGS A +G+ + V+ + + G V+ E G PLH A G + ++
Sbjct: 1 GPLGSM-CDKEFMWALKNGDLDEVKDYV-AKGEDVNRTL-EGGRKPLHYAADCGQLEILE 57
Query: 389 LLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARY 448
LL + AD + + DK+ T L A GH+ V++LL +GA+ G +
Sbjct: 58 FLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116
Query: 449 GHVGII 454
++
Sbjct: 117 AIKALL 122
Score = 118 bits (299), Expect = 1e-31
Identities = 34/161 (21%), Positives = 53/161 (32%), Gaps = 43/161 (26%)
Query: 402 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKG 461
A +G L V+ + +G ++N T +GG + +H AA G + I+ LL KG
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 462 EKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
++ DK+ T L A GH+ V++LL +GA
Sbjct: 64 ADINA--------------------------PDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 522 EINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADL 562
+ G TA L
Sbjct: 98 DKTVKGP-----------------DGLTAFEATDNQAIKAL 121
Score = 114 bits (289), Expect = 4e-30
Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 27/145 (18%)
Query: 370 NGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 429
A G + V +++ D+ + G+ LH AA G L+++E LL +GA
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 430 EINATDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADL 489
+INA DK + +A GHV + LL KG V
Sbjct: 65 DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV----------------------- 101
Query: 490 LQSADKNGKTCLHIAATHGHLQMVE 514
+G T +++
Sbjct: 102 ---KGPDGLTAFEATDNQAIKALLQ 123
Score = 114 bits (288), Expect = 4e-30
Identities = 31/138 (22%), Positives = 44/138 (31%), Gaps = 18/138 (13%)
Query: 494 DKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHL 553
A +G L V+ + +G ++N T + GR LH
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG-----------------GRKPLHY 46
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 613
AA G ++ FL+ A I+ TPL A G + KLLL GA
Sbjct: 47 AADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD 105
Query: 614 GQKPIHVAAQNNFPEVAQ 631
G + Q
Sbjct: 106 GLTAFEATDNQAIKALLQ 123
Score = 105 bits (264), Expect = 8e-27
Identities = 30/153 (19%), Positives = 46/153 (30%), Gaps = 34/153 (22%)
Query: 19 SIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKA 78
S+ + A G ++ V + V+ + GR LH AA+ G L++ + LL A
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 79 FINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCK 138
IN+ + T L A G+ + K
Sbjct: 65 DINAPDKHHITPLLSAVYEGH----------------------------------VSCVK 90
Query: 139 LLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQ 171
LLL GA G + Q
Sbjct: 91 LLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 100 bits (251), Expect = 4e-25
Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 37/152 (24%)
Query: 123 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 182
A + G L K + G ++ T + G+KP+H AA E+ + FL + +
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILE-FLLLKGADIN 67
Query: 183 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 242
A K T PL A GH + V++
Sbjct: 68 APDKHHIT------------------------------------PLLSAVYEGHVSCVKL 91
Query: 243 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 274
L+ GA T + G TA +L+
Sbjct: 92 LLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 95.9 bits (240), Expect = 1e-23
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 2/119 (1%)
Query: 87 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 146
A NG D + V ++ + PLH AA+ GQL++ + LL GA
Sbjct: 7 CDKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 147 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 205
I+A D P+ A ++ L + + T DG T Q +++
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLL-SKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 94.4 bits (236), Expect = 4e-23
Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 17/135 (12%)
Query: 254 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 312
A +NG +++ + +V + G LH AA GQ + + LL
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62
Query: 313 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGY 372
GA + +TPL A Y G+ + V+LLL S G + +G
Sbjct: 63 -----------GADI--NAPDKHHITPLLSAVYEGHVSCVKLLL-SKGADKTVKG-PDGL 107
Query: 373 NPLHLACFGGHVTVV 387
++
Sbjct: 108 TAFEATDNQAIKALL 122
Score = 90.9 bits (227), Expect = 8e-22
Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 15/129 (11%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
A + G + V+ V G + G +H AA G ++LE + A ++
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA-DIN 67
Query: 286 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 344
+ K +T L A Y G V+ LLS GA + G+T
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSK-----------GADK--TVKGPDGLTAFEATD 114
Query: 345 YSGNENVVR 353
+ +++
Sbjct: 115 NQAIKALLQ 123
Score = 85.1 bits (212), Expect = 8e-20
Identities = 21/88 (23%), Positives = 34/88 (38%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N+ G PL A + G +E++ +L A ++ D+ + L A G++ LL
Sbjct: 34 NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL 93
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADL 102
+ A K G TA L
Sbjct: 94 SKGADKTVKGPDGLTAFEATDNQAIKAL 121
Score = 31.6 bits (73), Expect = 0.36
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 15 NKQTSIGWTPLLIACNRGHMELV 37
+ G T N+ L+
Sbjct: 100 TVKGPDGLTAFEATDNQAIKALL 122
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 119 bits (300), Expect = 8e-32
Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 43/152 (28%)
Query: 401 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQK 460
K+G T LH AA +GH + V+ LL +GA++NA K G +H AA+ GH I+ LL K
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 461 GEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQG 520
G V+ K+G T H+A +GH ++V++L +G
Sbjct: 65 GADVNA--------------------------RSKDGNTPEHLAKKNGHHEIVKLLDAKG 98
Query: 521 AEINATDKVCDALLTHKAFINSKSRVGRTALH 552
A++NA H
Sbjct: 99 ADVNARSW-----------------GSSHHHH 113
Score = 119 bits (300), Expect = 9e-32
Identities = 46/113 (40%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 331 LGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLL 390
GS+ G TPLH AA +G+ V+ LL S G V+A++ ++G PLHLA GH +V LL
Sbjct: 4 WGSKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARS-KDGNTPLHLAAKNGHAEIVKLL 61
Query: 391 LSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIH 443
L++ AD + + K+G T H+A +GH ++V++L +GA++NA G + H
Sbjct: 62 LAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 114 bits (289), Expect = 3e-30
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 18/127 (14%)
Query: 493 ADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALH 552
K+G T LH AA +GH + V+ LL +GA++NA K G T LH
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-----------------GNTPLH 47
Query: 553 LAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 612
LAA NG+A++ + L+ A ++ + TP HLA + G ++ KLL GA ++A
Sbjct: 48 LAAKNGHAEIVKLLL-AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
Query: 613 QGQKPIH 619
H
Sbjct: 107 GSSHHHH 113
Score = 102 bits (256), Expect = 7e-26
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 48 DVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV 107
++G + LH AA++G+ + LL+ A +N++S+ G T LHLAA NG+A++ + L+
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 108 HDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIH 159
A ++ + TP HLA + G ++ KLL GA ++A H
Sbjct: 63 -AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 99.0 bits (248), Expect = 8e-25
Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 16/121 (13%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
G T LH AA G A+ V++LLS GA S+ G TPLHLAA +G+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSK-----------GADV--NARSKDGNTPLHLAAKNGHA 55
Query: 350 NVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCL 409
+V+LLL + G V+A++ ++G P HLA GH +V LL ++ AD + +
Sbjct: 56 EIVKLLL-AKGADVNARS-KDGNTPEHLAKKNGHHEIVKLLDAKGAD-VNARSWGSSHHH 112
Query: 410 H 410
H
Sbjct: 113 H 113
Score = 98.2 bits (246), Expect = 2e-24
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G TPL A GH E V +L+ A V+ ++G + LHLAA++G+ ++ LL A +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLH 126
N++S+ G T HLA NG+ ++ + L A ++ + H
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLD-AKGADVNARSWGSSHHHH 113
Score = 92.1 bits (230), Expect = 3e-22
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 78 AFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVC 137
SK G T LH AA NG+A+ + L+ A ++ + TPLHLAA+ G ++
Sbjct: 2 HMWGSKD--GNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 138 KLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAH 193
KLLL GA ++A G P H+A +N E+ ++ A + V A + + H
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD-AKGADVNARSWGSSHHHH 113
Score = 82.8 bits (206), Expect = 4e-19
Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 37/141 (26%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
TPLH AA+ G + K LL GA ++A G P+H+AA+N E+ ++ L A + V
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AKGADV 68
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 241
A +KDGN TP LA + GH +V+
Sbjct: 69 NARSKDGN------------------------------------TPEHLAKKNGHHEIVK 92
Query: 242 VLVKAGASCTDENKTGFTAVH 262
+L GA + H
Sbjct: 93 LLDAKGADVNARSWGSSHHHH 113
Score = 77.4 bits (192), Expect = 3e-17
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N ++ G TPL +A GH E+V +L A V+ ++G + HLA ++G+ ++ L
Sbjct: 36 NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD 95
Query: 75 THKAFINSKSRVGRTALH 92
A +N++S H
Sbjct: 96 AKGADVNARSWGSSHHHH 113
Score = 72.8 bits (180), Expect = 2e-15
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 185 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVL 243
+KDGNT H AA G +++L+ G ++AR++ TPL LAA+ GHA +V++L
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLS---KGADVNARSK-DGNTPLHLAAKNGHAEIVKLL 61
Query: 244 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALH 295
+ GA +K G T HLA +NGH+++++ + + A +V ++ H
Sbjct: 62 LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA-DVNARSWGSSHHHH 113
Score = 62.8 bits (154), Expect = 4e-12
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 582 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
TPLH AA+ G + K LL GA ++A G P+H+AA+N E+ ++ L
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 107 bits (269), Expect = 8e-28
Identities = 51/95 (53%), Positives = 68/95 (71%), Gaps = 3/95 (3%)
Query: 335 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRA 394
+G TPLHLAA +G+ VV+LLL AG V+A+ +NG PLHLA GH+ VV LLL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 395 ADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 429
AD+ + DKNG+T LH+AA +GHL++V++LL GA
Sbjct: 59 ADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 105 bits (265), Expect = 2e-27
Identities = 47/92 (51%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
Query: 370 NGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 429
NG PLHLA GH+ VV LLL AD+ + DKNG+T LH+AA +GHL++V++LL GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 430 EINATDKGGARSIHTAARYGHVGIINTLLQKG 461
++NA DK G +H AAR GH+ ++ LL+ G
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 103 bits (259), Expect = 2e-26
Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 26/118 (22%)
Query: 404 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQKGEK 463
NG+T LH+AA +GHL++V++LL GA++NA DK G +H AAR GH+ ++ LL+ G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 464 VDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGA 521
V+ DKNG+T LH+AA +GHL++V++LL GA
Sbjct: 61 VNA--------------------------KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 96.7 bits (242), Expect = 3e-24
Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 18/110 (16%)
Query: 496 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAA 555
NG+T LH+AA +GHL++V++LL GA++NA DK GRT LHLAA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-----------------NGRTPLHLAA 43
Query: 556 MNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 605
NG+ ++ + L+ + A ++ +TPLHLAA G L+V KLLL+ GA
Sbjct: 44 RNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 90.5 bits (226), Expect = 5e-22
Identities = 39/87 (44%), Positives = 57/87 (65%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
G TPL +A GH+E+V +L A V+ D+ GR+ LHLAA +G+L+V LL A +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLV 107
N+K + GRT LHLAA NG+ ++ + L+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 86.3 bits (215), Expect = 1e-20
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 87 GRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 146
GRT LHLAA NG+ ++ + L+ + A ++ +TPLHLAA G L+V KLLL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 147 IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AH 177
++A D G+ P+H+AA+N EV ++ L A+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 85.5 bits (213), Expect = 2e-20
Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 15/106 (14%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
G T LH+AA G + V+ LL GA ++G TPLHLAA +G+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA-----------GADV--NAKDKNGRTPLHLAARNGHL 48
Query: 350 NVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAA 395
VV+LLL AG V+A+ +NG PLHLA GH+ VV LLL A
Sbjct: 49 EVVKLLL-EAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 85.1 bits (212), Expect = 3e-20
Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 18/94 (19%)
Query: 474 GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDAL 533
GH+ VV LLL AD+ + DKNG+T LH+AA +GHL++V++LL GA++NA DK
Sbjct: 13 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----- 66
Query: 534 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLV 567
GRT LHLAA NG+ ++ + L+
Sbjct: 67 ------------NGRTPLHLAARNGHLEVVKLLL 88
Score = 79.3 bits (197), Expect = 4e-18
Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 226 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 285
TPL LAA GH VV++L++AGA ++K G T +HLAA+NGH +V++ + + A +V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVN 62
Query: 286 SK-KLGVTALHVAAYFGQADTVRELLSH 312
+K K G T LH+AA G + V+ LL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 78.6 bits (195), Expect = 6e-18
Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 122 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 181
+TPLHLAA G L+V KLLL+ GA ++A D G+ P+H+AA+N EV ++ L + V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADV 61
Query: 182 TATTKDGNTCAHIAAMQGSVGVIEEL 207
A K+G T H+AA G + V++ L
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 63.5 bits (156), Expect = 1e-12
Identities = 35/89 (39%), Positives = 59/89 (66%), Gaps = 5/89 (5%)
Query: 187 DGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVK 245
+G T H+AA G + V++ L++ +G ++A+++ TPL LAA GH VV++L++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLE 56
Query: 246 AGASCTDENKTGFTAVHLAAQNGHNQVLE 274
AGA ++K G T +HLAA+NGH +V++
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVK 85
Score = 63.1 bits (155), Expect = 2e-12
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 582 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 634
+TPLHLAA G L+V KLLL+ GA ++A D G+ P+H+AA+N EV ++ L
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Score = 62.0 bits (152), Expect = 5e-12
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
N + G TPL +A GH+E+V +L A V+ D+ GR+ LHLAA +G+L+V LL
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Query: 75 THKAF 79
A+
Sbjct: 89 EAGAY 93
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 99.6 bits (249), Expect = 5e-25
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 21/130 (16%)
Query: 504 AATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLC 563
++H H L+ +G+ + + L AA G D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD--------------------LGKKLLEAARAGQDDEV 40
Query: 564 RFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQ 623
R L+ + A + TPLHLAA G L+V KLLL+ GA + A D G+ ++
Sbjct: 41 RILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Query: 624 NNFPEVAQIF 633
N ++A+I
Sbjct: 100 NGNEDLAEIL 109
Score = 99.2 bits (248), Expect = 6e-25
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 30/139 (21%)
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG 437
H L+ R + + + L AA G V +L+ GA++ A DK
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 438 GARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNG 497
G+ +H AAR GH+ VV LLL AD + + DK G
Sbjct: 57 GSTPLHLAARNGHLE-------------------------VVKLLLEAGAD-VXAQDKFG 90
Query: 498 KTCLHIAATHGHLQMVEVL 516
KT I+ +G+ + E+L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 97.6 bits (244), Expect = 2e-24
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 22/127 (17%)
Query: 474 GHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDAL 533
H L+ R + + + L AA G V +L+ GA++ A DK
Sbjct: 5 HHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK----- 55
Query: 534 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQ 593
G T LHLAA NG+ ++ + L+ + A + +T ++ + G
Sbjct: 56 ------------NGSTPLHLAARNGHLEVVKLLL-EAGADVXAQDKFGKTAFDISIDNGN 102
Query: 594 LQVCKLL 600
+ ++L
Sbjct: 103 EDLAEIL 109
Score = 91.5 bits (228), Expect = 3e-22
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 19/128 (14%)
Query: 297 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 356
+ L+ G+ L AA +G ++ VR+L+
Sbjct: 1 GSSHHHHHHSSGLVPR-----------GSHM-----GSDLGKKLLEAARAGQDDEVRILM 44
Query: 357 NSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHG 416
+ G V A+ +NG PLHLA GH+ VV LLL AD + + DK GKT I+ +G
Sbjct: 45 -ANGADVAAKD-KNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNG 101
Query: 417 HLQMVEVL 424
+ + E+L
Sbjct: 102 NEDLAEIL 109
Score = 84.2 bits (209), Expect = 1e-19
Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 28 ACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVG 87
+ H + ++ + + + L AA G L+ + A + +K + G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 88 RTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 140
T LHLAA NG+ ++ + L+ + A + +T ++ + G + ++L
Sbjct: 58 STPLHLAARNGHLEVVKLLL-EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 79.5 bits (197), Expect = 5e-18
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 94 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 153
+ + + LV + + L AA AGQ ++L+ GA + A D
Sbjct: 1 GSSHHHHHHSSGLV-PRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 154 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 207
G P+H+AA+N EV + L + V A K G T I+ G+ + E L
Sbjct: 57 GSTPLHLAARNGHLEVVK-LLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 79.2 bits (196), Expect = 6e-18
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Query: 264 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 323
+ + H+ + + ++ S L AA GQ D VR L+++
Sbjct: 1 GSSHHHHHHSSGLVPRGS-HMGSD--LGKKLLEAARAGQDDEVRILMAN----------- 46
Query: 324 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGH 383
GA ++G TPLHLAA +G+ VV+LLL AG V AQ + G ++ G+
Sbjct: 47 GADV--AAKDKNGSTPLHLAARNGHLEVVKLLL-EAGADVXAQD-KFGKTAFDISIDNGN 102
Query: 384 VTVVGLL 390
+ +L
Sbjct: 103 EDLAEIL 109
Score = 79.2 bits (196), Expect = 7e-18
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
LL A G + V ++ N A V D+ G + LHLAA +G+L+V LL A +
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFL 106
++ + G+TA ++ NG DL L
Sbjct: 84 XAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 75.7 bits (187), Expect = 1e-16
Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 40/150 (26%)
Query: 128 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 187
+ L+ G+ + + K + AA+ + +I + A+ + V A K+
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILM-ANGADVAAKDKN 56
Query: 188 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 247
G+T PL LAA GH VV++L++AG
Sbjct: 57 GST------------------------------------PLHLAARNGHLEVVKLLLEAG 80
Query: 248 ASCTDENKTGFTAVHLAAQNGHNQVLEEMR 277
A ++K G TA ++ NG+ + E ++
Sbjct: 81 ADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 70.3 bits (173), Expect = 1e-14
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 554 AAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 613
+ + + LV + + L AA AGQ ++L+ GA + A D
Sbjct: 1 GSSHHHHHHSSGLV-PRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 614 GQKPIHVAAQNNFPEVAQIFL 634
G P+H+AA+N EV ++ L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLL 77
Score = 68.8 bits (169), Expect = 3e-14
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 195 AAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN 254
+ L+ R + + L AA G + VR+L+ GA ++
Sbjct: 1 GSSHHHHHHSSGLV--PRGSHMGSDLG----KKLLEAARAGQDDEVRILMANGADVAAKD 54
Query: 255 KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVREL 309
K G T +HLAA+NGH +V++ + + A +V ++ K G TA ++ G D L
Sbjct: 55 KNGSTPLHLAARNGHLEVVKLLLEAGA-DVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 49.9 bits (120), Expect = 1e-07
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 15 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+ G TPL +A GH+E+V +L A V D+ G++A ++ ++G + + L
Sbjct: 51 AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 76.2 bits (187), Expect = 4e-15
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 87 GRTALHLAAMNG---YADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
TALHLA + + FLV ++ +D T + T LH + KLLL
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 176
ASI+ ++ G+ P+ +A + ++ +A
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 76.2 bits (187), Expect = 4e-15
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 547 GRTALHLAAMNG---YADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 603
TALHLA + + FLV ++ +D T + T LH + KLLL
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227
Query: 604 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 636
ASI+ ++ G+ P+ +A + ++ +A
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 71.6 bits (175), Expect = 1e-13
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 12/126 (9%)
Query: 38 NTMLNNHARVDVFDQEGRSALHLAAEHG---YLKVCDALLTHKAFINSKSRVGRTALHLA 94
L + + +ALHLA L + D L+ + ++ ++ G TALH
Sbjct: 153 GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC 212
Query: 95 AMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQG 154
+ A+ + L+ A I+I +TPL +A +LL + G
Sbjct: 213 CLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALS--------G 263
Query: 155 QKPIHV 160
+ HV
Sbjct: 264 RFNSHV 269
Score = 70.8 bits (173), Expect = 2e-13
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 365 AQTQENGYNPLHLACFGG---HVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMV 421
A E LHLA + +V L+ + +L G T LH + + +
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECL 221
Query: 422 EVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLL--QKGEKVD 465
++LL A I ++ G + A R H L G
Sbjct: 222 KLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS 267
Score = 70.4 bits (172), Expect = 3e-13
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 18 TSIGWTPLLIAC---NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
T L +A +R + +V+ ++ N +D +G +ALH + LL
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFLVH 108
KA I + G T L +A + L
Sbjct: 226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 60.4 bits (146), Expect = 5e-10
Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 24/166 (14%)
Query: 455 NTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVE 514
L + T + G+ L+ L + + +T LH+A +
Sbjct: 128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEK-IPLANGHEPDETALHLAVRSVDRTSLH 186
Query: 515 VLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVI 574
+ D L+ + ++ ++ G TALH + A+ + L+ A I
Sbjct: 187 I--------------VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR-GKASI 231
Query: 575 DILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHV 620
+I +TPL +A +LL + G+ HV
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQALS--------GRFNSHV 269
Score = 55.0 bits (132), Expect = 3e-08
Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 29/123 (23%)
Query: 398 LQSADKNGKTCLHIAATHG---HLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGII 454
L + + +T LH+A L +V+ L+ ++ G+ ++H + +
Sbjct: 162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL 221
Query: 455 NTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVE 514
LL+ +++ +++G+T L IA H E
Sbjct: 222 KLLLRGKASIEIA--------------------------NESGETPLDIAKRLKHEHCEE 255
Query: 515 VLL 517
+L
Sbjct: 256 LLT 258
Score = 54.2 bits (130), Expect = 6e-08
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 150 TDDQGQKPIHVAAQNNFPEVAQI--FLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 207
+ + +H+A ++ I FL + + T G+T H + + ++ L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224
Query: 208 MKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 246
++ I N E TPL +A H + +L +A
Sbjct: 225 LR--GKASIEIANESGE-TPLDIAKRLKHEHCEELLTQA 260
Score = 51.9 bits (124), Expect = 3e-07
Identities = 15/98 (15%), Positives = 37/98 (37%)
Query: 184 TTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVL 243
+ T H+A + + ++ + +T L +A +++L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224
Query: 244 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 281
++ AS N++G T + +A + H E + + +
Sbjct: 225 LRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262
Score = 51.5 bits (123), Expect = 5e-07
Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 25/153 (16%)
Query: 219 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKT---------GFTAVHLAAQNG- 268
+ A L E + L++A A D + TA+HLA ++
Sbjct: 122 KKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD 181
Query: 269 --HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGAS 326
+++ + + G TALH A+ ++ LL AS
Sbjct: 182 RTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG-----------KAS 230
Query: 327 FLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 359
E+ +ESG TPL +A +E+ LL +
Sbjct: 231 I--EIANESGETPLDIAKRLKHEHCEELLTQAL 261
Score = 49.2 bits (117), Expect = 3e-06
Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 21/123 (17%)
Query: 290 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 349
TALH+A ++ + V + D T G T LH + N
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT----------GKGSTALHYCCLTDNA 218
Query: 350 NVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKT-C 408
++LLL ++ E+G PL +A H +LL A
Sbjct: 219 ECLKLLL-RGKASIEIAN-ESGETPLDIAKRLKHEHCE--------ELLTQALSGRFNSH 268
Query: 409 LHI 411
+H+
Sbjct: 269 VHV 271
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 76.2 bits (187), Expect = 5e-15
Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 15/138 (10%)
Query: 502 HIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYAD 561
A + L V G + DA LHLA
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDA-----------QAPEELVLHLAVKVANQA 204
Query: 562 ---LCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 618
L F++ + +D T LH AA Q KLLL A + ++ G+ +
Sbjct: 205 SLPLVDFIIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 263
Query: 619 HVAAQNNFPEVAQIFLRA 636
+A + + E ++ +A
Sbjct: 264 DIARKKHHKECEELLEQA 281
Score = 73.1 bits (179), Expect = 4e-14
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 87 GRTALHLAAMNGYAD---LCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
LHLA L F++ + +D T LH AA Q KLLL
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 176
A + ++ G+ + +A + + E ++ +A
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELLEQA 281
Score = 66.9 bits (163), Expect = 5e-12
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 7/116 (6%)
Query: 350 NVVRLLLNSAGV---QVDAQTQENGYNPLHLAC---FGGHVTVVGLLLSRAADLLQSADK 403
+V+ N Q LHLA + +V ++ L +
Sbjct: 166 SVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAA 224
Query: 404 NGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVGIINTLLQ 459
+G T LH AA + +++LL A + ++ G ++ A + H L Q
Sbjct: 225 DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 63.9 bits (155), Expect = 5e-11
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 10/123 (8%)
Query: 41 LNNHARVDVFDQEGRSALHLAAEHGY---LKVCDALLTHKAFINSKSRVGRTALHLAAMN 97
LHLA + L + D ++ + +++K+ G TALH AA+
Sbjct: 177 FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALY 236
Query: 98 GYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP 157
D + L+ A++ + +T L +A + + C+ LL+ + P
Sbjct: 237 NQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKE-CEELLEQAQA-----GTFAFP 289
Query: 158 IHV 160
+HV
Sbjct: 290 LHV 292
Score = 60.0 bits (145), Expect = 9e-10
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 18 TSIGWTPLLIAC---NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALL 74
+ L +A N+ + LV+ ++ N +D +G +ALH AA + LL
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246
Query: 75 THKAFINSKSRVGRTALHLAAMNGYADLCRFL 106
+A + + + G TAL +A + + L
Sbjct: 247 KGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 52.3 bits (125), Expect = 3e-07
Identities = 24/163 (14%), Positives = 45/163 (27%), Gaps = 46/163 (28%)
Query: 410 HIAATHGHLQMVEVLLGQGAEINATDKG------GARSIHTAARYGHVGIINTLLQKGEK 463
A + L V G + G +H A + +
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA----------- 204
Query: 464 VDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEI 523
+ +V ++ L + +G T LH AA + +++LL A +
Sbjct: 205 -----------SLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
Query: 524 NATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFL 566
++ G TAL +A + + L
Sbjct: 253 GTVNE-----------------AGETALDIARKKHHKECEELL 278
Score = 48.8 bits (116), Expect = 4e-06
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
L+ + + G T L A + + +L A V ++ G +AL +A + + K C+ L
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH-KECEEL 277
Query: 74 L 74
L
Sbjct: 278 L 278
Score = 47.3 bits (112), Expect = 1e-05
Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 187 DGNTCAHIAAMQG---SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVL 243
H+A S+ +++ +++ G + A+ T L AA + +++L
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKA-ADGNTALHYAALYNQPDCLKLL 245
Query: 244 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 281
+K A N+ G TA+ +A + H + E + ++A
Sbjct: 246 LKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283
Score = 45.8 bits (108), Expect = 4e-05
Identities = 24/125 (19%), Positives = 38/125 (30%), Gaps = 25/125 (20%)
Query: 290 GVTALHVAAYFGQADTVR--ELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 347
LH+A ++ + + G + + G T LH AA
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA------------DGNTALHYAALYN 237
Query: 348 NENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKT 407
+ ++LLL V E G L +A H +LL+ A
Sbjct: 238 QPDCLKLLL-KGRALVGT-VNEAGETALDIARKKHHKECE--------ELLEQAQAGTFA 287
Query: 408 -CLHI 411
LH+
Sbjct: 288 FPLHV 292
Score = 43.1 bits (101), Expect = 3e-04
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 16/114 (14%)
Query: 249 SCTDENKTGFTAVHLAAQNGHN---QVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADT 305
D +HLA + + +++ + + G TALH AA + Q D
Sbjct: 182 PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC 241
Query: 306 VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 359
++ LL A +E+G T L +A ++ LL +
Sbjct: 242 LKLLLKG-----------RALV--GTVNEAGETALDIARKKHHKECEELLEQAQ 282
Score = 38.4 bits (89), Expect = 0.008
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 226 TPLQLAAEGGHANVVRV---LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 282
L LA + + + + +++ G + G TA+H AA L+ + +AL
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 251
Query: 283 NVYSKKLGVTALHVAAYFGQADTVRELL 310
+ G TAL +A + ELL
Sbjct: 252 VGTVNEAGETALDIARKKHHKECE-ELL 278
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 75.6 bits (185), Expect = 1e-14
Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 16/146 (10%)
Query: 491 QSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTA 550
+ G + L + L GA++N + + T
Sbjct: 194 LGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNG---------------GQDNATP 238
Query: 551 LHLAAMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 610
L A C FL+ + A ++ + PLH A G + L L GA + A
Sbjct: 239 LIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Query: 611 DDQGQKPIHVAAQNNFPEVAQIFLRA 636
D +G+ P+ +A + ++ + A
Sbjct: 298 DSEGRDPLTIAMETANADIVTLLRLA 323
Score = 75.2 bits (184), Expect = 2e-14
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 3/127 (2%)
Query: 52 QEGRSALHLAAEHGYLKVCDALLTHKAFINSK--SRVGRTALHLAAMNGYADLCRFLVHD 109
G + L L H A +N + T L A C FL+
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ- 256
Query: 110 HAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEV 169
+ A ++ + PLH A G + L L GA + A D +G+ P+ +A + ++
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316
Query: 170 AQIFLRA 176
+ A
Sbjct: 317 VTLLRLA 323
Score = 72.5 bits (177), Expect = 2e-13
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 3/115 (2%)
Query: 311 SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 370
T+ GA G + TPL A + + LL + G V+
Sbjct: 210 PPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQAD-SA 267
Query: 371 GYNPLHLACFGGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLL 425
G PLH A GH + L L R AD L + D G+ L IA + +V +L
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 66.0 bits (160), Expect = 2e-11
Identities = 33/202 (16%), Positives = 56/202 (27%), Gaps = 29/202 (14%)
Query: 317 VKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLH 376
+ P G + +R + + G
Sbjct: 148 LTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHP--GALLFR 205
Query: 377 LACFGGHVTVVGLLLSRAADL-LQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATD 435
+ + + L+ AD+ + ++ T L A L E LL GA +N D
Sbjct: 206 ASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD 265
Query: 436 KGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADK 495
G +H A GH G+ L++G + D
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGAR--------------------------DS 299
Query: 496 NGKTCLHIAATHGHLQMVEVLL 517
G+ L IA + +V +L
Sbjct: 300 EGRDPLTIAMETANADIVTLLR 321
Score = 64.4 bits (156), Expect = 6e-11
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 120 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 179
TPL A A L C+ LL GA+++ D G+ P+H A +A +FL+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 180 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSG 214
+ A +G IA + I L++ +
Sbjct: 294 -LGARDSEGRDPLTIAMETANAD-IVTLLRLAKMR 326
Score = 64.4 bits (156), Expect = 6e-11
Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 1/127 (0%)
Query: 333 SESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLS 392
G + + + + L ++ PL A + LL
Sbjct: 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ 256
Query: 393 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVG 452
A++ AD G+ LH A GH + + L +GA++ A D G + A +
Sbjct: 257 NGANV-NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANAD 315
Query: 453 IINTLLQ 459
I+ L
Sbjct: 316 IVTLLRL 322
Score = 60.2 bits (145), Expect = 1e-09
Identities = 24/88 (27%), Positives = 35/88 (39%)
Query: 21 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDALLTHKAFI 80
TPL+ A + +L N A V+ D GR LH A G+ + L A +
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 81 NSKSRVGRTALHLAAMNGYADLCRFLVH 108
++ GR L +A AD+ L
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 56.3 bits (135), Expect = 2e-08
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Query: 580 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 639
TPL A A L C+ LL GA+++ D G+ P+H A +A +FL+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 640 LVTATTKEKERAKDLIAAGKHCEGMATELLALAAGADSAGRILTATD 686
+ A E + + + LL LA ++ A D
Sbjct: 294 -LGARDSEGRDPLTIAMETANAD--IVTLLRLAKMREAEAAQGQAGD 337
Score = 56.3 bits (135), Expect = 2e-08
Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 6/134 (4%)
Query: 149 ATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATT--KDGNTCAHIAAMQGSVGVIEE 206
+ G + AH + V +D T A S+ E
Sbjct: 195 GSLHPGALLFRASGHPPSLP-TMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEF 253
Query: 207 LMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 266
L++ ++ + PL A GH + + +K GA + G + +A +
Sbjct: 254 LLQ--NGANVNQADSAGR-GPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
Query: 267 NGHNQVLEEMRSSK 280
+ ++ +R +K
Sbjct: 311 TANADIVTLLRLAK 324
Score = 52.5 bits (125), Expect = 3e-07
Identities = 33/172 (19%), Positives = 50/172 (29%), Gaps = 45/172 (26%)
Query: 399 QSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKG--GARSIHTAARYGHVGIINT 456
+ G + L + L GA++N + G A + A +
Sbjct: 194 LGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEF 253
Query: 457 LLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVL 516
LLQ G V+ D G+ LH A GH + +
Sbjct: 254 LLQNGANVNQA--------------------------DSAGRGPLHHATILGHTGLACLF 287
Query: 517 LGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVH 568
L +GA++ A D GR L +A AD+ L
Sbjct: 288 LKRGADLGARD-----------------SEGRDPLTIAMETANADIVTLLRL 322
Score = 48.2 bits (114), Expect = 8e-06
Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 6/110 (5%)
Query: 14 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVCDAL 73
+N+ S G PL A GH L L A + D EGR L +A E L
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN-ADIVTL 319
Query: 74 LTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQT 123
L +K R A A Y D+ R + + L+ R
Sbjct: 320 LRL-----AKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHD 364
Score = 43.2 bits (101), Expect = 3e-04
Identities = 21/86 (24%), Positives = 28/86 (32%)
Query: 225 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 284
ATPL A L++ GA+ + G +H A GH + A
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 285 YSKKLGVTALHVAAYFGQADTVRELL 310
G L +A AD V L
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLLR 321
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 70.3 bits (172), Expect = 1e-12
Identities = 30/146 (20%), Positives = 47/146 (32%), Gaps = 15/146 (10%)
Query: 501 LHIAATHGHLQMVEVLLGQGAEINATDKVCDALLTHKAFINSKSRVGRTALHLA---AMN 557
L A + L V G + DA LHLA A
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDA-----------QAPEELVLHLAVKVANQ 184
Query: 558 GYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP 617
L F++ + +D T LH AA Q KLLL A + ++ G+
Sbjct: 185 ASLPLVDFIIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 243
Query: 618 IHVAAQNNFPEVAQIFLRAHPSLVTA 643
+ +A + + E ++ +A
Sbjct: 244 LDIARKKHHKECEELLEQAQAGTFAF 269
Score = 67.6 bits (165), Expect = 9e-12
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 87 GRTALHLA---AMNGYADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
LHLA A L F++ + +D T LH AA Q KLLL
Sbjct: 171 EELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 229
Query: 144 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTA 183
A + ++ G+ + +A + + E ++ +A
Sbjct: 230 RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269
Score = 63.0 bits (153), Expect = 3e-10
Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 8/127 (6%)
Query: 340 LHLAAYSGN-ENVVRLLLNSAGV---QVDAQTQENGYNPLHLACF---GGHVTVVGLLLS 392
L A + + +V+ N Q LHLA + +V ++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 393 RAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAEINATDKGGARSIHTAARYGHVG 452
L + +G T LH AA + +++LL A + ++ G ++ A + H
Sbjct: 196 NGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 254
Query: 453 IINTLLQ 459
L Q
Sbjct: 255 CEELLEQ 261
Score = 59.1 bits (143), Expect = 5e-09
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 5/115 (4%)
Query: 6 SGTEISKALNKQTS--IGWTPLLIAC---NRGHMELVNTMLNNHARVDVFDQEGRSALHL 60
+G + + L + L +A N+ + LV+ ++ N +D +G +ALH
Sbjct: 154 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213
Query: 61 AAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVID 115
AA + LL +A + + + G TAL +A + + L A
Sbjct: 214 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268
Score = 50.7 bits (121), Expect = 2e-06
Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 9/124 (7%)
Query: 389 LLLSRAADLLQS-----ADKNGKTCLHIA---ATHGHLQMVEVLLGQGAEINATDKGGAR 440
+ D Q A + LH+A A L +V+ ++ G ++A G
Sbjct: 150 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 209
Query: 441 SIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKT- 499
++H AA Y + LL+ V +LL+ A
Sbjct: 210 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269
Query: 500 CLHI 503
LH+
Sbjct: 270 PLHV 273
Score = 44.1 bits (104), Expect = 2e-04
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 186 KDGNTCAHIA---AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 242
H+A A Q S+ +++ +++ G + A+ T L AA + +++
Sbjct: 169 APEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAA-DGNTALHYAALYNQPDCLKL 225
Query: 243 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK 280
L+K A N+ G TA+ +A + H + E + ++
Sbjct: 226 LLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ 263
Score = 43.7 bits (103), Expect = 2e-04
Identities = 25/173 (14%), Positives = 46/173 (26%), Gaps = 46/173 (26%)
Query: 409 LHIAATHGHLQMVEVLLGQGAEINAT------DKGGARSIHTAARYGHVGIINTLLQKGE 462
L A + L V G + +H A + +
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA---------- 185
Query: 463 KVDVTTNNLACGHVTVVGLLLSRAADLLQSADKNGKTCLHIAATHGHLQMVEVLLGQGAE 522
+ +V ++ L + +G T LH AA + +++LL A
Sbjct: 186 ------------SLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232
Query: 523 INATDKVCDALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHDHAAVID 575
+ ++ G TAL +A + + L A
Sbjct: 233 VGTVNE-----------------AGETALDIARKKHHKECEELLEQAQAGTFA 268
Score = 42.2 bits (99), Expect = 7e-04
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 142 DLGASIDATDDQ--GQKPIHVAAQNNFPEVAQI--FLRAHPSLVTATTKDGNTCAHIAAM 197
D G + D Q + +H+A + + F+ + + A DGNT H AA+
Sbjct: 157 DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 216
Query: 198 QGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 246
++ L+K ++ N E T L +A + H +L +A
Sbjct: 217 YNQPDCLKLLLK--GRALVGTVNEAGE-TALDIARKKHHKECEELLEQA 262
Score = 34.9 bits (80), Expect = 0.14
Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 16/121 (13%)
Query: 285 YSKKLGVTALHVAAYFGQADTVR--ELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 342
++ LH+A ++ + + G + + + G T LH
Sbjct: 166 DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK------------AADGNTALHY 213
Query: 343 AAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVGLLLSRAADLLQSAD 402
AA + ++LLL V E G L +A H LL A
Sbjct: 214 AALYNQPDCLKLLLKG-RALVGT-VNEAGETALDIARKKHHKECEELLEQAQAGTFAFPL 271
Query: 403 K 403
Sbjct: 272 H 272
Score = 31.4 bits (71), Expect = 1.5
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
Query: 215 VISARNRVTEATPLQLA---AEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 271
+ + E L LA A +V +++ G + G TA+H AA
Sbjct: 162 LPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPD 221
Query: 272 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKS 319
L+ + +AL + G TAL +A + L GT
Sbjct: 222 CLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 2e-10
Identities = 103/609 (16%), Positives = 179/609 (29%), Gaps = 237/609 (38%)
Query: 292 TALHV-AAYFGQADTVRE-LLSHVP----GTVKSDPPTG-----ASFLGELGSESGMTPL 340
L V A F A ++E +P G D PT FLG + S + P
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL--VEPS 75
Query: 341 HLAAYSGNENVVRLLLNSAGVQVDAQTQENGY---NPLHLACFGGHVTVVGLL------- 390
+ + + V+ L L EN Y N +H + L
Sbjct: 76 KVGQF---DQVLNLCLTEF---------ENCYLEGNDIH--------ALAAKLLQENDTT 115
Query: 391 LSRAADLLQS-----------ADKNGKTCLHIAATHGHLQMVEVLLGQGA------EINA 433
L + +L+++ DK + L A G+ Q+V + GQG E+
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-- 173
Query: 434 TDKGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGLLLSRAADLLQSA 493
R ++ Y +VG L+ +A+ L
Sbjct: 174 ------RDLYQ--TYH---------------------------VLVGDLIKFSAETLSEL 198
Query: 494 DKNGKTC-------------LHIAAT---HGHLQMVEV---LLG--QGAEINATDKVCDA 532
+ L + +L + + L+G Q A T K+
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG- 257
Query: 533 LLTHKAFINS-KSRVGR-----TALHLAAMNGYADLCRFLVHDHAAVIDILT------LR 580
T + K G TA+ +A + + +V +T +R
Sbjct: 258 -FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-------FVSVRKAITVLFFIGVR 309
Query: 581 KQ--TPLHLAAEAGQLQVCKLLLDLGA-------SI-DATDDQGQKPIHVAAQN-NFPEV 629
P + + L+ L+ SI + T +Q Q +V N + P
Sbjct: 310 CYEAYP-NTSLPPSILEDS---LENNEGVPSPMLSISNLTQEQVQD--YVNKTNSHLPAG 363
Query: 630 AQIFLRAHPSLVTATTKEKERAKDLIAAG--KHCEGMATELLALAAGADSAGRILTATDR 687
Q+ + SLV AK+L+ +G + G+ L A + D+
Sbjct: 364 KQVEI----SLVNG-------AKNLVVSGPPQSLYGLNLTLRKAKAPSG--------LDQ 404
Query: 688 RNIEFLDVLIENEQKEVIA----------HT-----VVQRYLQELWQGSLNWAAWKTML- 731
I F +E+K + H+ ++L + ++++ A +
Sbjct: 405 SRIPF------SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA--KDIQ 456
Query: 732 --LFLTF-------------------ILCPPV-W-ICFTLSLGHKYNKVPIIKF------ 762
++ TF I+ PV W H I+ F
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH------ILDFGPGGAS 510
Query: 763 -MSYLTSHM 770
+ LT
Sbjct: 511 GLGVLTHRN 519
Score = 63.5 bits (154), Expect = 3e-10
Identities = 98/599 (16%), Positives = 180/599 (30%), Gaps = 206/599 (34%)
Query: 24 PLLIACNRGHME---LVNTMLNNHARV--DVF-------------DQEGRSALHLAAEHG 65
PL + + G +E LV T A + F D E + L +
Sbjct: 8 PLTL--SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK-- 63
Query: 66 YLKVCDALLTHKAFINS---KSRVGRTALHLAAMNGYADLCRFLVHDHAAVIDILTLRKQ 122
+L +++S S+VG+ L + +L + DI
Sbjct: 64 FL----------GYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGN-----DI------ 101
Query: 123 TPLH-LAAEAGQLQVCKLLLDLGASIDATDDQGQKPI----HVAAQNNFPEVAQIFLRAH 177
H LAA+ L D T + ++ I P F +
Sbjct: 102 ---HALAAK------------LLQENDTTLVKTKELIKNYITARIMAKRP-----FDKKS 141
Query: 178 PSLVTATTKDGNTCAHIAAM---QGSVGV-IEELMK-FDRSG------VISARNRVTEAT 226
S + +GN A + A+ QG+ EEL + + + ++E
Sbjct: 142 NSALFRAVGEGN--AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 227 PLQLAAEGGHANVVRV---------------LVKAGASCTDENKTGFTA-VH-LAAQNGH 269
L AE + + L+ SC G H +
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC---PLIGVIQLAHYVVTAKLL 256
Query: 270 NQVLEEMRSS-KALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFL 328
E+RS K +S+ L VTA+ +A D+ V + F
Sbjct: 257 GFTPGELRSYLKGATGHSQGL-VTAVAIAE----TDSWESFFVSVRKAIT------VLFF 305
Query: 329 GELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLHLACFGGHVTVVG 388
+G + AY L + ++ + E +P+ L+
Sbjct: 306 --IGVRC-----YE-AYP------NTSLPPSILEDSLENNEGVPSPM-LSISN------- 343
Query: 389 LLLSRAADLLQSADKNGKTCLHIAATHGHL---QMVEVLLGQGAEINATDKGGARSI--- 442
L++ +Q ++ T+ HL + VE+ L +N GA+++
Sbjct: 344 --LTQEQ--VQD---------YVNKTNSHLPAGKQVEISL-----VN-----GAKNLVVS 380
Query: 443 -HTAARYGHVGIINTLLQK---------------GEKVDVTTNNLACGHVTVV--GLLLS 484
+ YG +N L+K K+ + L V LL
Sbjct: 381 GPPQSLYG----LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP---VASPFHSHLLV 433
Query: 485 RAADLLQSADKNGKTCLHIAATHGHLQM-V------EVLLGQGAEINATDKVCDALLTH 536
A+DL+ +++ +Q+ V L + + ++++ D ++
Sbjct: 434 PASDLINKDLVKN----NVSFNAKDIQIPVYDTFDGSDL--RVLSGSISERIVDCIIRL 486
Score = 57.4 bits (138), Expect = 2e-08
Identities = 74/456 (16%), Positives = 131/456 (28%), Gaps = 165/456 (36%)
Query: 44 HARVDV---FDQEGRSALHLAAEHGYLKVCDALLTHKAFINSKSRVGRTALHLAAMNG-- 98
AR+ FD++ SAL A G ++ A G
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLV-----------------------AIFGGQG 164
Query: 99 ---------------YADLCRFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDL 143
Y L L+ A TL + L AE +V L++
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAE-----TLSELIRTTLDAE----KVFTQGLNI 215
Query: 144 GASIDATDDQGQKPIHVAAQNNFP--EVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSV 201
++ + K ++ + P V Q+ AH +VTA + ++G+
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQL---AH-YVVTAKLLGFTPGELRSYLKGAT 271
Query: 202 GVIEELMKFDRSGVISA-------------RN-------------RVTEATP-------- 227
G + G+++A + R EA P
Sbjct: 272 GHSQ--------GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 228 LQLAAEGGHAN-----VVRVLVKAG--ASCTDENKTGFTA--VHLAAQNGHNQV------ 272
L+ + E + L + N V ++ NG +
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 273 ---------LEEMRSSKALNV----YSKK--------LGVTA-LHVAAYFGQADTVRELL 310
L + ++ L+ +S++ L V + H LL
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-----------SHLL 432
Query: 311 SHVPGTVKSD-PPTGASFLG-ELG-----SESGMTPLHLAAYSGN--ENVVRLLLNSAGV 361
+ D SF ++ + G L SG+ E +V ++ V
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG---SDLRVLSGSISERIVDCIIRLP-V 488
Query: 362 QVDAQTQENGYNPLHLACFG-GHVTVVGLLLSRAAD 396
+ + TQ + H+ FG G + +G+L R D
Sbjct: 489 KWETTTQ---FKATHILDFGPGGASGLGVLTHRNKD 521
Score = 40.4 bits (94), Expect = 0.003
Identities = 45/246 (18%), Positives = 71/246 (28%), Gaps = 96/246 (39%)
Query: 198 QGS--VGVIEELMK--------FDRS--------GVISARNRVTEATPLQLA----AEGG 235
QGS G+ +L K ++R+ G S + V P+ L E G
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYG-FSILDIVINN-PVNLTIHFGGEKG 1681
Query: 236 HA---------------------NVVRVLVKAGASCTDE------NKTGFT-----AVHL 263
+ + + + S T + T FT +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 264 AAQNGHNQVLEEMRSSKALNVY---SKKLG-VTAL-HVAAYFGQADTVRELLSHVPG-TV 317
AA + L+ A + S LG AL +A V + G T+
Sbjct: 1742 AA----FEDLKSKGLIPADATFAGHS--LGEYAALASLADVMSIESLVE--VVFYRGMTM 1793
Query: 318 KSDPPTGASFLGELG-SESGM---TPLHLAAYSGNENVVRLL----------------LN 357
+ P ELG S GM P +AA S ++ ++ + N
Sbjct: 1794 QVAVPRD-----ELGRSNYGMIAINPGRVAA-SFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 358 SAGVQV 363
Q
Sbjct: 1848 VENQQY 1853
Score = 35.4 bits (81), Expect = 0.11
Identities = 45/281 (16%), Positives = 81/281 (28%), Gaps = 87/281 (30%)
Query: 486 AADLLQSADK----------------NGKT-CLHIAATHG------HLQMV-EVLLGQGA 521
A D+ AD N +H G + M+ E ++
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 522 EINATDKVCDALLTHKAFINSKSRVGRT-----ALHLAAMNGYADLC-RFLVHDHAAVID 575
+ K + T F + K + T AL L + DL + L+ A
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 576 ILTLRKQTPLH-------LAAEAGQL---QVCKLLL---DLGASIDATDDQGQKPIHVAA 622
H LA+ A + + +++ D+ G+ + A
Sbjct: 1762 ----------HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 623 QNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIA-----AGKHCE-------GM----AT 666
N P V A+ + E + ++ G E A
Sbjct: 1812 IN-------------PGRVAASFSQ-EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 667 ELLALAAGADSAGRILTATDRRNIEFLDVLIENEQKEVIAH 707
+L AL D+ +L + I+ +++ +EV H
Sbjct: 1858 DLRAL----DTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 34.3 bits (78), Expect = 0.27
Identities = 25/149 (16%), Positives = 43/149 (28%), Gaps = 49/149 (32%)
Query: 846 FILSEGKITTHLL-PFQFVYNLMVCSKNHNNKPMEEFVLMSPAPVDTAAK---------L 895
LS G + LL P + E+F + P P + A L
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQ--------EQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 896 SSIYITLATKEKERAKDLIAAGKHCEGMATELLALAAGADSAGRILTATDRRNIEFL--- 952
++ + E G ++L L LT + +L
Sbjct: 61 VGKFLGYVSSLVE---------PSKVGQFDQVLNLC---------LTEFEN---CYLEGN 99
Query: 953 DV-------LIENEQKEVIAHTVVQRYLQ 974
D+ L EN+ V +++ Y+
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYIT 128
Score = 31.6 bits (71), Expect = 1.7
Identities = 47/268 (17%), Positives = 79/268 (29%), Gaps = 76/268 (28%)
Query: 733 FLTFI--LCPPVWICFTLSLGHKYNKVPIIKFM------SYLTS---HMYLMFLLMLVGI 781
FL ++ L P ++ YL H L+
Sbjct: 64 FLGYVSSLVEP---------SKVGQFDQVLNLCLTEFENCYLEGNDIHA---LAAKLLQE 111
Query: 782 TPIYPVVRPNLVPYWYEWTLLVWLSGLLLFELTNPSDKSGL------GWVKLAVLLFGIF 835
V L+ + + S+ S L G +L IF
Sbjct: 112 NDTTLVKTKELIKNYIT------ARIMAKRPFDKKSN-SALFRAVGEGNAQL----VAIF 160
Query: 836 G------------VALH-----LLEYTFILSEGKITTHLLP--------FQFVYNLMVCS 870
G L+ L+ I + + L+ F N++
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVG-DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 871 KNHNNKPMEEFVLMSPA--PVDTAAKLSSIYIT---LATKEKERAKDLIAAGKHCEGMAT 925
+N +N P ++++L P P+ +L+ +T L E L A H +G+ T
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 926 ELLALA-AGADSAGRILTATDRRNIEFL 952
A+A A DS + R+ I L
Sbjct: 280 ---AVAIAETDSWESFFVSV-RKAITVL 303
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 4e-05
Identities = 58/353 (16%), Positives = 107/353 (30%), Gaps = 105/353 (29%)
Query: 676 DSAGRILTATDRRNI----------EFLDVLIENEQKEVIAHTVVQRYLQELWQGSLNW- 724
D IL+ + +I L + ++Q+E+ VQ++++E+ + + +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM-----VQKFVEEVLRINYKFL 94
Query: 725 -AAWKTMLLFLTFILCPPVWICFTLSLGHKYNKVPIIKFMSYLTSHMYLMFLLMLVGITP 783
+ KT + P + Y+ L +
Sbjct: 95 MSPIKTE------------------------QRQPSMMTRMYIEQRDRLY---NDNQVFA 127
Query: 784 IYPVVRPNLVPYWYEWTLLVWLSGLLLFELTNPSDKSGLGWVKLAVLLFGIFG-----VA 838
Y V R L L L P+ VL+ G+ G VA
Sbjct: 128 KYNVSRLQPY-----LKLRQALLEL------RPAKN---------VLIDGVLGSGKTWVA 167
Query: 839 LHLLEYTFILSEGKITTHLLPFQFVY--NLMVCSKNHNNKPMEEFVLMSPAPVDTAAKLS 896
L + K+ + F+ ++ NL C+ M + +L P T+
Sbjct: 168 LD------VCLSYKVQCK-MDFK-IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 897 SIYITLATKE-KERAKDLIAAGKHCEGMATELLAL-------AAGA-DSAGRILTATDRR 947
S I L + + L+ + + LL L A A + + +IL T R
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENC----LLVLLNVQNAKAWNAFNLSCKILLTT--R 273
Query: 948 NIEFLDVLIENEQKEVIAHTVVQRYLQELWQGSLNWAAWKTMLLFLTFILCPP 1000
+ D L + + +L + L L ++ C P
Sbjct: 274 FKQVTDFLSAATTTHIS---------LDHHSMTLTPD--EVKSLLLKYLDCRP 315
Score = 44.8 bits (105), Expect = 2e-04
Identities = 83/562 (14%), Positives = 148/562 (26%), Gaps = 151/562 (26%)
Query: 462 EKVDVTTNN---LACGHVTVVGLLLS-RAADLLQSADKN-----------GKTCLHIAAT 506
E+ D N+ A +V+ + L R A L GKT + A
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNVLIDGVLGSGKTWV--AL- 168
Query: 507 HGHLQMVEVLLGQGAEINATDKVCDALLTHKAF-INSKSRVGRTALHLAAMNGYADLCRF 565
+V L + K+ F +N L + L
Sbjct: 169 -------DVCLSYKVQCKMDFKI---------FWLNL-KNCNSPETVLEMLQ---KLLYQ 208
Query: 566 LVHDHAAVIDILTLRKQTPLHLAAEAGQL-------QVCKLLLDLGASIDATDDQGQKPI 618
+ + + D L + + +L LL L +
Sbjct: 209 IDPNWTSRSDHS---SNIKLRIHSIQAELRRLLKSKPYENCLLVL-------LN------ 252
Query: 619 HVAAQNNFPEVAQIF-LRAHPSLVTATTKEKERAKDLIAAGKHCEGMATELLALAAGADS 677
V QN + F L L+ TT+ K+ L AA
Sbjct: 253 -V--QN--AKAWNAFNLSC-KILL--TTRFKQVTDFLSAA-------------------- 284
Query: 678 AGRILTATDRRNIEFLDVLIENEQKEVIAHTVVQRYLQELWQGSLNWAAWKTMLLFLTFI 737
T T L +E K ++ +YL + L T L+ I
Sbjct: 285 -----TTTHISLDHHSMTLTPDEVKSLLL-----KYL-DCRPQDLPREVLTTNPRRLSII 333
Query: 738 --LC---PPVWICFTLSLGHKYNKVPIIKFMSYLTS----HMYLMFLLMLVGITPIYPVV 788
W + K + I ++ L M+ + I ++
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTIL 391
Query: 789 RPNLVPYWYEWTLLVWLSGLLLFELTNPSDKSGL--GWVKLAVLLFGIFGVALHLLEYTF 846
L W++ + + + N K L K I + L L
Sbjct: 392 ---LSLIWFD------VIKSDVMVVVNKLHKYSLVEKQPKE--STISIPSIYLELK---- 436
Query: 847 ILSEGKITTHLLPFQFV--YNLMVCSKNHNNKPMEE------FV---LMSPAPVDTAAKL 895
+ E + H V YN+ + + P + L + +
Sbjct: 437 VKLENEYALHR---SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 896 SSIYITLA-TKEKERAKDLIAAGKHCEGMATELLALAAGADSAGRILTATDRRNIEFLDV 954
+++ ++K R A + L L +R LD
Sbjct: 494 RMVFLDFRFLEQKIRHDST--AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 955 LIENEQKEVIA-HT-VVQRYLQ 974
L + E+ + + +T +++ L
Sbjct: 552 LPKIEENLICSKYTDLLRIALM 573
Score = 44.5 bits (104), Expect = 2e-04
Identities = 67/507 (13%), Positives = 132/507 (26%), Gaps = 164/507 (32%)
Query: 54 GRSALHLAAEHGYLKVCDALLTHKAFIN-----SKSRVGRTALHLAAMNGYADLCRFLVH 108
G++ + A + VC + + L + L +
Sbjct: 162 GKTWV--ALD-----VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQIDP 211
Query: 109 DHAAVIDILTLRKQTPLHLAAEAGQL-------QVCKLLLDLGASIDATDDQGQKPIHVA 161
+ + D L + + +L LL L + V
Sbjct: 212 NWTSRSDHS---SNIKLRIHSIQAELRRLLKSKPYENCLLVL-------LN-------V- 253
Query: 162 AQNNFPEVAQIF-LRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK-FDRSGVISAR 219
QN + F L L+T T+ ++A + ++ V S
Sbjct: 254 -QN--AKAWNAFNLSC-KILLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 220 NRVTEATPLQLAAE--GGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN----GHNQVL 273
+ + P L E + + ++ S D T N +++
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSII---AESIRDGLAT--------WDNWKHVNCDKLT 356
Query: 274 EEMRSS-KALN------VYSKKLGVTALHVAAYFGQADTVRELLSHVPGTV------KSD 320
+ SS L ++ +L V F H+P +
Sbjct: 357 TIIESSLNVLEPAEYRKMF-DRLSV--------F-PPSA------HIPTILLSLIWFDVI 400
Query: 321 PPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQENGYNPLH---L 377
+ +L S L E+ + + + ++ + + LH +
Sbjct: 401 KSDVMVVVNKLHKYS------LVEKQPKESTISIP----SIYLELKVKLENEYALHRSIV 450
Query: 378 ACFGGHVTVVGLLLSRAADLLQSADKNGKT--------CLHIAATHGHLQMVEVLLGQGA 429
+ ++ ++ D + HI H HL+ +E
Sbjct: 451 DHY---------------NIPKTFDSDDLIPPYLDQYFYSHIG--H-HLKNIE----HPE 488
Query: 430 EINATDKG-------GARSIHTA-ARYGHVGIINTLLQ----KG----------EKVDVT 467
+ + H + A I+NTL Q K V+
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 468 TNNL-ACGHVTVVGLLLSRAADLLQSA 493
+ L L+ S+ DLL+ A
Sbjct: 549 LDFLPKIEEN----LICSKYTDLLRIA 571
Score = 37.9 bits (87), Expect = 0.020
Identities = 71/507 (14%), Positives = 148/507 (29%), Gaps = 124/507 (24%)
Query: 271 QVLEEMRSSKALNVYSKK-LGVTALHVAAY-----------------FGQADTVRELLSH 312
Q L E+R +K + + G T + + ++ +L
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 313 VPGT-VKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ----VDAQT 367
+ + DP S L + S + RLL + +
Sbjct: 202 LQKLLYQIDPN-----WTSRSDHSSNIKLRIH--SIQAELRRLLKSKPYENCLLVLL--- 251
Query: 368 QENGYNPLHLACFGGHVTVVGLLLSR---AADLLQSADKNGKTCLHIAATHGHLQMVEVL 424
N N F + LL +R D L +A + H + T ++ L
Sbjct: 252 --NVQNAKAWNAFNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-L 306
Query: 425 LGQGAEINATD-KGGARSIHTAARYGHVGIINTLLQKGEKVDVTTNNLACGHVTVVGL-- 481
L + + D + + + II ++ G T +N HV L
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRR----LSIIAESIRDGLA---TWDNWK--HVNCDKLTT 357
Query: 482 LLSRAADLLQSADKNGKTCL----------HIAATHGHLQMVEVLLGQGAEINATDKVCD 531
++ + ++L+ A+ + HI ++ ++ + + V
Sbjct: 358 IIESSLNVLEPAEY--RKMFDRLSVFPPSAHIPT-----ILLSLIWFDVIKSDVMVVVNK 410
Query: 532 ALLTHKAFINSKSRVGRTALHLAAMNGYADLCRFLVHD---HAAVIDILTLRKQTPL--- 585
L + + + + ++ + Y +L L ++ H +++D + K
Sbjct: 411 --LHKYSLVEKQPKESTISIP----SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 586 ---------------HL-AAEAGQLQVC--KLLLDLGASIDATDDQGQKPIHVAAQNNFP 627
HL E + + LD ++ QK H + N
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LE------QKIRHDSTAWN-- 515
Query: 628 EVAQIFLRAHPSLVTATTKEKERAKDLIAAGKHCEGMATELLALAAGADSAGRILTATDR 687
+ T ++ + K I + + A+ L +
Sbjct: 516 ---------ASGSILNTLQQLKFYKPYIC--DNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 688 RNIEFLDVLIENEQKEVI--AHTVVQR 712
++ L + + E + + AH VQR
Sbjct: 565 TDL--LRIALMAEDEAIFEEAHKQVQR 589
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain;
membrane protein, electron-transfer, oxidoreductase;
HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP:
f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C*
1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Length = 225
Score = 31.9 bits (72), Expect = 0.83
Identities = 10/83 (12%), Positives = 27/83 (32%)
Query: 757 VPIIKFMSYLTSHMYLMFLLMLVGITPIYPVVRPNLVPYWYEWTLLVWLSGLLLFELTNP 816
P ++ + + L L++ + + + L+ W ++ F
Sbjct: 115 SPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGAS 174
Query: 817 SDKSGLGWVKLAVLLFGIFGVAL 839
G+ ++ L+ G+ L
Sbjct: 175 QHLDGVAFIFRLHLVLGMTLFLL 197
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 31.2 bits (70), Expect = 1.8
Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 13/114 (11%)
Query: 674 GADSAGRILTATDRRNIEFLDVLIENEQKEVIAHTVVQRYLQELWQGSLNWAAWKTMLLF 733
G+ R + R N++ ++ E RYL +L+ ++ +
Sbjct: 1 GSKKRQRFVDKNGRCNVQHGNLGSET-----------SRYLSDLFTTLVDLKWRWFFVSL 49
Query: 734 LTFILCPPVWICFTLSLGHKYNKVPIIKFMSYLTSHMYLMFLLMLVGITPIYPV 787
L + F + + + + + L VG ++P
Sbjct: 50 AVLFLL--LNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQ 101
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS
and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A
{Methanosarcina acetivorans}
Length = 194
Score = 29.9 bits (67), Expect = 3.1
Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 7/105 (6%)
Query: 729 TMLLFLTFILCPPVWICFTLSLGHKYNKVPIIKFMSYLTSHMYLMFLLMLVGITPIYPVV 788
L + FI+ +W+ G + K K + + + + P+ V
Sbjct: 3 ENLWKICFIVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTAVF 62
Query: 789 RPNLVPYWYEWTLLVWLSGLLLFELTNPSDKSGLGWVKLAVLLFG 833
L + + L L++ L +G G
Sbjct: 63 SSYLDSFNINLPDSIRLFALIVTFL-------NIGLFTKIHKDLG 100
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 29.3 bits (65), Expect = 3.9
Identities = 22/127 (17%), Positives = 31/127 (24%), Gaps = 15/127 (11%)
Query: 619 HVAAQNNFPEVAQIFLRAHPSLVTATTKEKERAKDLIAAGKHCEGMATELLALAAGADSA 678
A Q FP +A++F A E AK+ A L G
Sbjct: 30 EKAEQEGFPNIAKLFRA------IA-YAEFVHAKNHFIALGKLGKTPENLQMGIEGETFE 82
Query: 679 GRILTATDRRNIEFLDVLIENEQKEVIAHTVVQRYLQELWQGSLNWAAWKTMLLFLTFIL 738
+ + +KE T E L A +
Sbjct: 83 -----VEEMYP-VYNKAAEFQGEKE-AVRTTHYALEAEKIHAELYRKAKEKAEKGEDI-E 134
Query: 739 CPPVWIC 745
V+IC
Sbjct: 135 IKKVYIC 141
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 29.6 bits (66), Expect = 4.6
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 15/109 (13%)
Query: 679 GRILTATDRRNIEFLDVLIENEQKEVIAHTVVQRYLQELWQGSLNWAAWKTMLLFLTFIL 738
RIL + NI L + + +L + + L + + L L
Sbjct: 12 PRILNSDGSSNITRLGLEK-------------RGWLDDHYHDLLTVSWPVFITLITGLYL 58
Query: 739 CPPVWICFTLSLGHKYNKVPIIKFMSYLTSHMYLMFLLMLVGITPIYPV 787
F L+ + + + S+ + + + + +G + P+
Sbjct: 59 V--TNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPI 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.399
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,373,398
Number of extensions: 967889
Number of successful extensions: 6843
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2743
Number of HSP's successfully gapped: 607
Length of query: 1015
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 912
Effective length of database: 3,825,930
Effective search space: 3489248160
Effective search space used: 3489248160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.0 bits)