RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14875
         (104 letters)



>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens
          [TaxId: 615]}
          Length = 243

 Score = 27.9 bits (61), Expect = 0.19
 Identities = 4/23 (17%), Positives = 10/23 (43%)

Query: 12 ILLPSAEWHTLNHKGKTARITYR 34
          I   +  W+     G+  ++T+ 
Sbjct: 36 ITRENQTWNGYKVFGQPVKLTFS 58


>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi
          [TaxId: 556]}
          Length = 241

 Score = 25.2 bits (54), Expect = 1.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 12 ILLPSAEWHTLNHKGKTARITYR 34
          I   +  W+  N  GK+A +T++
Sbjct: 40 ITRENVSWNGTNVFGKSANLTFK 62


>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase
          subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
          Length = 74

 Score = 24.4 bits (53), Expect = 1.5
 Identities = 5/22 (22%), Positives = 10/22 (45%)

Query: 3  PIEEASFSGILLPSAEWHTLNH 24
            EE ++ G ++P  E    + 
Sbjct: 24 DGEEVTYEGYIMPPYELSAGDT 45


>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase
           {Garden sage (Salvia officinalis) [TaxId: 38868]}
          Length = 207

 Score = 24.4 bits (53), Expect = 2.6
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 41  LHYFNSTCTTFCRPRDDKFGHFTCDSNGD 69
            H FN +   F   +++K   F      D
Sbjct: 99  QHGFNISQDVFNCFKNEKGIDFKASLAQD 127


>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 39

 Score = 23.1 bits (50), Expect = 2.7
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 6/29 (20%)

Query: 57 DKFGHFTCDSNGDKVCIAGWKGTNCETAV 85
          D  G +TC       C+ G++G NCE   
Sbjct: 16 DGLGEYTCT------CLEGFEGKNCELFT 38


>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
          protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 39

 Score = 23.1 bits (50), Expect = 2.8
 Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 6/27 (22%)

Query: 57 DKFGHFTCDSNGDKVCIAGWKGTNCET 83
          D+ G F C       C+ G++G +CE 
Sbjct: 17 DQIGEFQCI------CMPGYEGVHCEV 37


>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 273

 Score = 24.3 bits (52), Expect = 3.6
 Identities = 9/66 (13%), Positives = 15/66 (22%)

Query: 37  VQCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGK 96
           V  D+   N   ++    +   FG      +      +  K      A            
Sbjct: 130 VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSA 189

Query: 97  CDVPGL 102
            DV   
Sbjct: 190 SDVWMF 195


>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
          protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 42

 Score = 22.8 bits (49), Expect = 4.0
 Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 6/27 (22%)

Query: 57 DKFGHFTCDSNGDKVCIAGWKGTNCET 83
          +  G F C       C+ G+ G  CE 
Sbjct: 21 NTLGSFECQ------CLQGYTGPRCEI 41


>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 39

 Score = 22.3 bits (48), Expect = 4.2
 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 6/26 (23%)

Query: 57 DKFGHFTCDSNGDKVCIAGWKGTNCE 82
          D    + C       C  G++G NCE
Sbjct: 19 DDINSYECW------CPFGFEGKNCE 38


>g1bev.1 b.121.4.1 (4:,2:) Bovine enterovirus coat proteins {Bovine
           enterovirus, VG-5-27 [TaxId: 12064]}
          Length = 284

 Score = 23.3 bits (50), Expect = 7.1
 Identities = 7/40 (17%), Positives = 12/40 (30%)

Query: 9   FSGILLPSAEWHTLNHKGKTARITYRVRVQCDLHYFNSTC 48
               L  +  +          R  + V VQC+   F+   
Sbjct: 118 LPDALNNTGMFGQNAQFHYLYRGGWAVHVQCNATKFHQGT 157


>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
          [TaxId: 9823]}
          Length = 37

 Score = 22.0 bits (47), Expect = 7.5
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 6/26 (23%)

Query: 57 DKFGHFTCDSNGDKVCIAGWKGTNCE 82
          D+   + C       C+  ++G NCE
Sbjct: 18 DQLQSYICF------CLPAFEGRNCE 37


>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 22.3 bits (47), Expect = 8.9
 Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 6/47 (12%)

Query: 39 CDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAV 85
           +  +  +    F          + C       C  G+ G  C   V
Sbjct: 9  KEKTFCVNGGECFMVKDLSNPSRYLC------KCQPGFTGARCTENV 49


>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
          protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 21.6 bits (46), Expect = 9.7
 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 6/26 (23%)

Query: 57 DKFGHFTCDSNGDKVCIAGWKGTNCE 82
          DK   F C+      C  G+ G  C+
Sbjct: 16 DKINEFQCE------CPTGFTGHLCQ 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.489 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 436,115
Number of extensions: 19385
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 43
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)