BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14876
         (121 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3D00|A Chain A, Crystal Structure Of A Tungsten Formylmethanofuran
           Dehydrogenase Subunit E (Fmde)-Like Protein (Syn_00638)
           From Syntrophus Aciditrophicus At 1.90 A Resolution
          Length = 191

 Score = 25.4 bits (54), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 9   FELQILEIANYKGELASGICCGGLHRPDPSISCP------VQCNTLFRVCLKEYQSNVTS 62
           +E  + +I  + G  A G+  GG        + P        C T  R CL +    +T 
Sbjct: 12  YEEYVEKITAFHGYPAPGVLIGGFXVDLAVKNLPEGILYDAICET--RTCLPDAVQLLT- 68

Query: 63  NGPCSFGNTSSPVLGGNSFTLTDPDRANGNLVLPF 97
             PC+FGN    VL    F ++  D+  G  V  F
Sbjct: 69  --PCTFGNGWLTVLPXGLFAVSLYDKFTGEGVRVF 101


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,932,233
Number of Sequences: 62578
Number of extensions: 157052
Number of successful extensions: 185
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 2
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)