Query psy14876
Match_columns 121
No_of_seqs 104 out of 169
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 23:04:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1omc_A Omega-conotoxin GVIA; p 43.9 9.5 0.00032 20.0 1.2 24 25-53 4-27 (28)
2 1g1p_A Conotoxin EVIA; three d 41.1 13 0.00046 20.4 1.5 11 22-32 14-24 (33)
3 1mpz_A Obtustatin; disintegrin 28.8 42 0.0014 19.0 2.4 9 24-32 2-10 (41)
4 1jxc_A Putative trypsin inhibi 15.2 44 0.0015 21.3 0.5 12 50-61 9-20 (68)
5 1brz_A Brazzein; sweet protein 13.9 44 0.0015 20.5 0.3 11 50-61 2-12 (54)
6 2w9o_A Jerdostatin, short disi 10.5 2.2E+02 0.0077 16.2 2.7 9 24-32 5-13 (46)
7 1jbi_A Cochlin, COCH-5B2; alph 10.2 1.6E+02 0.0056 19.5 2.2 17 91-108 82-98 (100)
8 2ds4_A Tripartite motif protei 9.6 3.1E+02 0.011 17.2 3.4 33 89-121 73-105 (113)
9 1o9a_B FNBB, fibronectin bindi 9.4 1.3E+02 0.0045 16.6 1.3 13 91-103 22-34 (36)
10 1fiw_L Beta-acrosin light chai 9.4 94 0.0032 16.3 0.6 13 40-52 4-16 (26)
No 1
>1omc_A Omega-conotoxin GVIA; presynaptic neurotoxin; HET: HYP; NMR {Conus geographus} SCOP: g.3.6.1 PDB: 1ttl_A* 2cco_A* 1tr6_A*
Probab=43.94 E-value=9.5 Score=19.98 Aligned_cols=24 Identities=25% Similarity=0.643 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCCCCCcCcCCCcceeeecc
Q psy14876 25 SGICCGGLHRPDPSISCPVQCNTLFRVCL 53 (121)
Q Consensus 25 ~G~CC~g~~~~~~~~~c~~~Crt~FRvCL 53 (121)
.|.-|+... .+|...|++.+++|+
T Consensus 4 ~G~~C~~~~-----~CCs~~C~~~~~~C~ 27 (28)
T 1omc_A 4 PGSSCSPTS-----YNCCRSCNPYTKRCY 27 (28)
T ss_dssp TTCBCCTTT-----TCBSSCEETTTTEEC
T ss_pred CCCccCCCc-----cHHHHHHcchhCEeC
Confidence 455665432 468899999999996
No 2
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=41.07 E-value=13 Score=20.36 Aligned_cols=11 Identities=45% Similarity=1.210 Sum_probs=8.3
Q ss_pred CCCCCCCCCCC
Q psy14876 22 ELASGICCGGL 32 (121)
Q Consensus 22 ~l~~G~CC~g~ 32 (121)
.+.+|-||+|.
T Consensus 14 ilknglccsga 24 (33)
T 1g1p_A 14 ILKNGLCCSGA 24 (33)
T ss_dssp SSSCCCBTTBC
T ss_pred hhcCCcccCCc
Confidence 56789999754
No 3
>1mpz_A Obtustatin; disintegrin, hydrolase; NMR {Macrovipera lebetina obtusa} SCOP: g.20.1.1 PDB: 2w9w_A 2w9v_A
Probab=28.83 E-value=42 Score=19.04 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=6.2
Q ss_pred CCCCCCCCC
Q psy14876 24 ASGICCGGL 32 (121)
Q Consensus 24 ~~G~CC~g~ 32 (121)
++|.||+.-
T Consensus 2 ~~G~CC~~C 10 (41)
T 1mpz_A 2 TTGPCCRQC 10 (41)
T ss_dssp CSSSCBTTT
T ss_pred CCCccccCC
Confidence 468899753
No 4
>1jxc_A Putative trypsin inhibitor ATTI-2; chymotrypsin inhibitor, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: g.3.7.5
Probab=15.19 E-value=44 Score=21.34 Aligned_cols=12 Identities=50% Similarity=0.899 Sum_probs=9.7
Q ss_pred eecccccccccC
Q psy14876 50 RVCLKEYQSNVT 61 (121)
Q Consensus 50 RvCLK~yq~~v~ 61 (121)
+-|||+|-..|.
T Consensus 9 ~eCLkeYggDVg 20 (68)
T 1jxc_A 9 NECLKEYGGDVG 20 (68)
T ss_dssp SCCCCBCCSSCS
T ss_pred hHHHHHhCCcCC
Confidence 579999987764
No 5
>1brz_A Brazzein; sweet protein, cysteine-stabilized alpha-beta; HET: PCA; NMR {Pentadiplandra brazzeana} SCOP: g.3.7.5 PDB: 2brz_A* 2kgq_A 2kyq_A
Probab=13.86 E-value=44 Score=20.52 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=8.4
Q ss_pred eecccccccccC
Q psy14876 50 RVCLKEYQSNVT 61 (121)
Q Consensus 50 RvCLK~yq~~v~ 61 (121)
+-|||+|. .|.
T Consensus 2 ~~ClKeYg-dvg 12 (54)
T 1brz_A 2 DKCKKVYE-NYP 12 (54)
T ss_dssp CCCEEECS-SCC
T ss_pred chhhhhhc-ccC
Confidence 46999998 653
No 6
>2w9o_A Jerdostatin, short disintegrin jerdostatin; venom, toxin, cell adhesion, blood coagulation; NMR {Trimeresurus jerdonii} PDB: 2w9u_A
Probab=10.49 E-value=2.2e+02 Score=16.19 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=6.2
Q ss_pred CCCCCCCCC
Q psy14876 24 ASGICCGGL 32 (121)
Q Consensus 24 ~~G~CC~g~ 32 (121)
++|.||+.=
T Consensus 5 ~~G~CC~~C 13 (46)
T 2w9o_A 5 TTGPCCRQC 13 (46)
T ss_dssp CCSSSBSSS
T ss_pred CCCcccCcC
Confidence 468898743
No 7
>1jbi_A Cochlin, COCH-5B2; alpha-beta protein, structural genomics, unknown function; NMR {Homo sapiens} SCOP: d.209.1.1
Probab=10.18 E-value=1.6e+02 Score=19.51 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=13.7
Q ss_pred CcEEeeeccccCccEEee
Q psy14876 91 GNLVLPFTFRWTFSATGS 108 (121)
Q Consensus 91 ~pI~iPF~F~WPgsFtl~ 108 (121)
|--.+.|. .||.||++.
T Consensus 82 Gi~S~~~~-~~~~SF~~s 98 (100)
T 1jbi_A 82 GIQSQMLS-RWSASFTVT 98 (100)
T ss_dssp SCEEECCS-CBSCEEEEE
T ss_pred CEEEcccC-CCCccEEEe
Confidence 44578888 999999975
No 8
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.59 E-value=3.1e+02 Score=17.17 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=24.9
Q ss_pred CCCcEEeeeccccCccEEeeecccccCCCCCCC
Q psy14876 89 ANGNLVLPFTFRWTFSATGSSSSNIRNQKPTPF 121 (121)
Q Consensus 89 ~~~pI~iPF~F~WPgsFtl~~~~~~~~~~~~~~ 121 (121)
..|...+-|.-.|||.++|.-.-|-+.-+-.||
T Consensus 73 ~dGty~v~y~p~~~G~y~i~V~~~g~~i~gSPF 105 (113)
T 2ds4_A 73 KDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPF 105 (113)
T ss_dssp SSSEEEEEEECSSSEEEEEEEEESSCBCTTCSE
T ss_pred CCCEEEEEEEeCCCeEEEEEEEECCEECCCCCE
Confidence 347889999999999999987766555554554
No 9
>1o9a_B FNBB, fibronectin binding protein; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Streptococcus dysgalactiae}
Probab=9.45 E-value=1.3e+02 Score=16.62 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=10.8
Q ss_pred CcEEeeeccccCc
Q psy14876 91 GNLVLPFTFRWTF 103 (121)
Q Consensus 91 ~pI~iPF~F~WPg 103 (121)
-.|.|.|+-.||.
T Consensus 22 pk~sihfdnewpk 34 (36)
T 1o9a_B 22 PKLSIHFDNEWPK 34 (36)
T ss_dssp CCCBCCCCCCCSC
T ss_pred cceEEeccCcCCC
Confidence 4688999999995
No 10
>1fiw_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2
Probab=9.41 E-value=94 Score=16.34 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=9.9
Q ss_pred cCcCCCcceeeec
Q psy14876 40 SCPVQCNTLFRVC 52 (121)
Q Consensus 40 ~c~~~Crt~FRvC 52 (121)
.|.++|...||-=
T Consensus 4 tcdgpCGlrfrqn 16 (26)
T 1fiw_L 4 TCDGPCGVRFRQN 16 (26)
T ss_pred ccccccCceeccC
Confidence 3778999999843
Done!