RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14876
(121 letters)
>gnl|CDD|219501 pfam07657, MNNL, N terminus of Notch ligand. This entry
represents a region of conserved sequence at the N
terminus of several Notch ligand proteins.
Length = 77
Score = 94.3 bits (235), Expect = 7e-27
Identities = 41/80 (51%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 5 GSGFFELQILEIANYKGELASGICCGGLHRPDPSISCPVQCNTLFRVCLKEYQSNVTSNG 64
SG FEL++L +N GELA+G CC G D C T FRVCLK YQ+ V+
Sbjct: 1 SSGVFELRLLSFSNDNGELANGNCCSG--GSDADCCRD-PCRTFFRVCLKHYQATVSPEP 57
Query: 65 PCSFGNTSSPVLGGNSFTLT 84
PC+FG+ +PVLGGNSF+LT
Sbjct: 58 PCTFGSGVTPVLGGNSFSLT 77
>gnl|CDD|146098 pfam03292, Pox_P4B, Poxvirus P4B major core protein.
Length = 666
Score = 31.3 bits (71), Expect = 0.085
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 17 ANYKGELASGICCGGLHRPDPSISCPVQCNTLFRVC 52
+Y +L S + C +H P S+SC V CN+L ++
Sbjct: 19 PSYDNQLLSLVDCDHIHIPSTSLSCSV-CNSLSKIN 53
>gnl|CDD|177643 PHA03415, PHA03415, putative internal virion protein; Provisional.
Length = 1019
Score = 29.2 bits (65), Expect = 0.49
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 50 RVCLKEYQSNVTSNGP-----CSFGNTSSPVLGGNSFTLTDPDRANGNLVL 95
R +++ + + S G ++P+L F + R N NL L
Sbjct: 715 RPWKRQHDAFLESRDTLLDRILHAGKQATPILNAMKFIHSHQSRLNANLTL 765
>gnl|CDD|211932 TIGR04209, sarcinarray, sarcinarray family protein. Members of
this protein family are exclusive to archaea, probably
all of which have S-layer surface protein arrays. All
member proteins have an N-terminal signal sequence. The
majority of known members belong to codirectional tandem
arrays in the genus Methanosarcina (nine in M. barkeri
str. Fusaro). Nearly all members have an additional 50
residues, (trimmed from the seed alignment for This
model), consisting of low-complexity sequence rich in
E,N,Q,T,S, and P, followed by a variant (PAF) form of
the PGF-CTERM putative archaeal surface glycoprotein
sorting signal. The coined name, sarcinarray family
protein, evokes the predicted archaeal surface layer
localization, the taxonomic bias of known members, and
the tandem organization of most members.
Length = 144
Score = 28.5 bits (64), Expect = 0.55
Identities = 17/73 (23%), Positives = 21/73 (28%), Gaps = 22/73 (30%)
Query: 51 VCLKEYQSN--VTSNGPCSFGNTSSPVLGGNSFTLTDPDRANGNLVLPFTFRWTFSAT-- 106
V L E +GP SS +L N TF WT + T
Sbjct: 59 VKLSELGGGSFEIISGPSPMNIYSSRILEKNE---------------THTFEWTVAPTDN 103
Query: 107 ---GSSSSNIRNQ 116
GS + Q
Sbjct: 104 WAGGSLPVDFHYQ 116
>gnl|CDD|129314 TIGR00210, gltS, sodium--glutamate symport carrier (gltS).
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 398
Score = 27.4 bits (61), Expect = 1.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 49 FRVCLKEYQSNVTSNGPCSFGNTSSPVLGGNSFTLTD 85
FR+ K+Y + V G C FG ++P N +T+
Sbjct: 326 FRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTE 362
>gnl|CDD|227788 COG5501, COG5501, Predicted secreted protein [Function unknown].
Length = 148
Score = 26.4 bits (58), Expect = 3.5
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 67 SFGNTSSPVLGGNSFTLTDPDRANGNLVLPFTFRWTFSATGSSSSNI---RNQKPT 119
G ++ + G ++T P A +P T T A S I +N P
Sbjct: 40 DLGGGAAILKGSALISVTAPYIAEDGATVPVTIEQTDPAAPIESLKIVVDKNPNPV 95
>gnl|CDD|182990 PRK11139, PRK11139, DNA-binding transcriptional activator GcvA;
Provisional.
Length = 297
Score = 26.3 bits (59), Expect = 3.7
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 75 VLGGNSFTLTDPDRANGNLVLPF 97
LG L P+ G LV PF
Sbjct: 237 ALGNRV--LAQPEIEAGRLVCPF 257
>gnl|CDD|114337 pfam05609, LAP1C, Lamina-associated polypeptide 1C (LAP1C). This
family contains rat LAP1C proteins and several
uncharacterized highly related sequences from both mice
and humans. LAP1s (lamina-associated polypeptide 1s) are
type 2 integral membrane proteins with a single
membrane-spanning region of the inner nuclear membrane.
LAP1s bind to both A- and B-type lamins and have a
putative role in the membrane attachment and assembly of
the nuclear lamina.
Length = 465
Score = 26.2 bits (57), Expect = 6.1
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 53 LKEYQSNVTSNGPCSFGNTSSPVLGGNSFTLTDPDRANG------NLVLP 96
LKE + V F N+ +P NS+ DPD+ NG +LVLP
Sbjct: 407 LKETEEKVRDFLKVKFTNSDTP----NSYNHMDPDKLNGLWSRISHLVLP 452
>gnl|CDD|217641 pfam03616, Glt_symporter, Sodium/glutamate symporter.
Length = 368
Score = 25.7 bits (57), Expect = 7.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 48 LFRVCLKEYQSNVTSNGPCSFGNTSSP 74
FR+ K+Y + V G C FG ++P
Sbjct: 327 TFRLMGKDYDAAVLCAGHCGFGLGATP 353
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.435
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,863,751
Number of extensions: 466384
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 15
Length of query: 121
Length of database: 10,937,602
Length adjustment: 84
Effective length of query: 37
Effective length of database: 7,211,866
Effective search space: 266839042
Effective search space used: 266839042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)