RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14876
         (121 letters)



>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics,
           center for structural genomics of infectious diseases,
           unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella
           enterica subsp}
          Length = 618

 Score = 29.2 bits (66), Expect = 0.33
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 8/40 (20%)

Query: 1   MCARGSGFFELQILEI---ANYKGELASGICCGGLHRPDP 37
           M A G G+F L +  +     Y   L+      G+  PDP
Sbjct: 67  MQANGDGWFTLDVAGVTPGTEYNFVLS-----DGMVVPDP 101


>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress,
           MERR family, activator; HET: DNA; 2.80A {Escherichia
           coli} PDB: 2zhh_A
          Length = 154

 Score = 27.8 bits (62), Expect = 0.76
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)

Query: 10  ELQILEIANYKGELASGICCGGLHRPDPSISCPV 43
           + +I  +   + EL   I CG L R D    CP+
Sbjct: 103 DRRIHTLVALRDELDGCIGCGCLSRSD----CPL 132


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 0.92
 Identities = 5/17 (29%), Positives = 9/17 (52%), Gaps = 4/17 (23%)

Query: 3    ARGSGFFELQILEIANY 19
             + +G+     +EI NY
Sbjct: 1834 GKRTGWL----VEIVNY 1846


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.435 

Gapped
Lambda     K      H
   0.267   0.0856    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,808,571
Number of extensions: 92139
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 12
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)