RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14876
         (121 letters)



>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO,
          C-terminal domain {Deinococcus radiodurans [TaxId:
          1299]}
          Length = 157

 Score = 24.7 bits (53), Expect = 3.4
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)

Query: 8  FFELQILEIANYKGELASGICCG--GLHRPDP 37
              ++L +A    + A    CG      PDP
Sbjct: 55 VMSYKLLGLAGVIPQTARCARCGAPDPEHPDP 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.435 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 459,496
Number of extensions: 19701
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 5
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)