BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14877
         (221 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Y43|B Chain B, Crystal Structure Of Aspergilloglutamic Peptidase From
           Aspergillus Niger
 pdb|3TRS|B Chain B, The Crystal Structure Of Aspergilloglutamic Peptidase From
           Aspergillus Niger
 pdb|3TRS|D Chain D, The Crystal Structure Of Aspergilloglutamic Peptidase From
           Aspergillus Niger
          Length = 173

 Score = 27.3 bits (59), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 28  KLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLE-NYCW 66
           + T  S   A V +L  G +   TF+GNV+GDL E N  W
Sbjct: 68  EATSKSSGSATVENLTTGQSVTHTFSGNVEGDLCETNAEW 107


>pdb|1QUO|A Chain A, L99aE108V MUTANT OF T4 LYSOZYME
          Length = 162

 Score = 27.3 bits (59), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 25  VWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLAR 75
           V+D L  +  A A  +    G+ G A FT +++  +L+   W +  +NLA+
Sbjct: 87  VYDSLDAVRRAAAINMVFQMGVTGVAGFTNSLR--MLQQKRWDEAAVNLAK 135


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,838,756
Number of Sequences: 62578
Number of extensions: 204420
Number of successful extensions: 460
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 2
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)