Query psy14877
Match_columns 221
No_of_seqs 120 out of 1300
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 23:05:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 1.6E-35 3.4E-40 267.5 15.0 196 1-196 265-466 (467)
2 KOG1304|consensus 100.0 3.5E-35 7.6E-40 258.3 12.8 190 2-194 251-449 (449)
3 KOG1305|consensus 100.0 5.9E-31 1.3E-35 232.7 17.3 195 1-197 203-408 (411)
4 PF01490 Aa_trans: Transmembra 100.0 1.1E-32 2.4E-37 244.0 -4.1 191 1-191 201-408 (409)
5 PLN03074 auxin influx permease 100.0 1.8E-29 3.9E-34 227.9 14.0 211 1-215 242-471 (473)
6 KOG1303|consensus 100.0 6.3E-28 1.4E-32 214.6 16.6 194 1-196 237-436 (437)
7 KOG4303|consensus 99.9 3.1E-26 6.6E-31 193.6 -0.0 193 1-196 311-516 (524)
8 COG0814 SdaC Amino acid permea 99.6 3.4E-14 7.3E-19 126.9 16.3 189 2-191 203-412 (415)
9 TIGR00837 araaP aromatic amino 99.1 5.3E-09 1.2E-13 92.3 14.6 156 3-162 189-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 98.8 6.9E-07 1.5E-11 79.6 17.5 179 2-183 194-391 (394)
11 PRK10483 tryptophan permease; 98.7 1.3E-06 2.7E-11 78.0 15.7 183 2-188 202-404 (414)
12 PRK15132 tyrosine transporter 98.6 2.7E-06 5.9E-11 75.9 16.1 184 2-188 191-393 (403)
13 PRK09664 tryptophan permease T 98.5 1.1E-05 2.3E-10 72.1 16.2 183 2-188 203-405 (415)
14 PRK13629 threonine/serine tran 98.2 3.2E-05 6.9E-10 69.4 14.0 187 2-189 219-441 (443)
15 TIGR00814 stp serine transport 98.1 1.7E-05 3.6E-10 70.8 9.1 177 2-180 196-396 (397)
16 PRK10644 arginine:agmatin anti 97.5 0.0093 2E-07 53.8 16.7 47 2-49 201-247 (445)
17 TIGR03813 put_Glu_GABA_T putat 97.4 0.017 3.6E-07 52.7 16.8 48 3-51 205-252 (474)
18 PRK11021 putative transporter; 97.3 0.033 7.2E-07 49.7 17.5 45 2-47 187-231 (410)
19 PRK10655 potE putrescine trans 97.3 0.027 5.8E-07 50.6 16.9 47 2-49 199-245 (438)
20 PRK11357 frlA putative fructos 97.2 0.022 4.8E-07 51.4 15.3 46 2-48 205-250 (445)
21 TIGR00909 2A0306 amino acid tr 97.0 0.03 6.5E-07 50.1 14.8 47 2-49 205-251 (429)
22 KOG1287|consensus 97.0 0.0099 2.2E-07 53.9 11.4 162 2-164 214-388 (479)
23 PRK10746 putative transport pr 97.0 0.094 2E-06 47.7 17.9 158 2-161 210-387 (461)
24 PRK11387 S-methylmethionine tr 97.0 0.091 2E-06 47.8 17.4 48 2-50 216-263 (471)
25 PRK10197 gamma-aminobutyrate t 96.9 0.082 1.8E-06 47.8 16.7 156 2-161 191-367 (446)
26 PRK10836 lysine transporter; P 96.9 0.22 4.9E-06 45.5 19.3 47 3-50 216-262 (489)
27 TIGR00913 2A0310 amino acid pe 96.7 0.33 7.2E-06 44.1 19.3 44 2-46 207-250 (478)
28 PF13520 AA_permease_2: Amino 96.7 0.087 1.9E-06 46.9 15.3 99 2-103 198-305 (426)
29 TIGR00908 2A0305 ethanolamine 96.7 0.074 1.6E-06 47.9 14.8 45 2-47 201-245 (442)
30 TIGR03810 arg_ornith_anti argi 96.7 0.14 3.1E-06 46.5 16.6 49 3-53 206-254 (468)
31 TIGR00911 2A0308 L-type amino 96.7 0.11 2.4E-06 47.7 15.8 47 2-49 245-291 (501)
32 PRK15049 L-asparagine permease 96.7 0.12 2.5E-06 47.7 15.7 49 2-51 230-278 (499)
33 PRK10249 phenylalanine transpo 96.6 0.23 4.9E-06 45.1 17.3 45 2-47 219-263 (458)
34 TIGR00905 2A0302 transporter, 96.6 0.19 4.1E-06 45.8 16.6 47 2-50 209-255 (473)
35 PRK10435 cadB lysine/cadaverin 96.4 0.4 8.8E-06 43.1 17.6 50 2-52 197-246 (435)
36 PRK11049 D-alanine/D-serine/gl 96.4 0.3 6.5E-06 44.4 16.9 47 2-49 221-267 (469)
37 TIGR00907 2A0304 amino acid pe 96.4 0.41 8.9E-06 43.6 17.5 50 3-53 228-277 (482)
38 TIGR00910 2A0307_GadC glutamat 96.4 0.35 7.6E-06 44.6 17.0 43 2-45 204-246 (507)
39 PRK10238 aromatic amino acid t 96.3 0.58 1.3E-05 42.4 18.2 42 2-44 210-251 (456)
40 TIGR01773 GABAperm gamma-amino 96.3 0.41 8.9E-06 43.2 17.2 47 2-49 211-257 (452)
41 COG0531 PotE Amino acid transp 96.1 0.78 1.7E-05 41.1 17.7 52 2-54 211-262 (466)
42 TIGR00906 2A0303 cationic amin 96.0 0.26 5.7E-06 46.0 14.4 154 2-160 241-409 (557)
43 PRK10580 proY putative proline 95.9 1.1 2.3E-05 40.6 17.5 45 2-47 209-253 (457)
44 TIGR00930 2a30 K-Cl cotranspor 95.8 0.78 1.7E-05 45.7 17.1 43 4-47 292-334 (953)
45 PRK15238 inner membrane transp 95.6 1.2 2.5E-05 40.9 16.9 46 2-48 221-266 (496)
46 TIGR03428 ureacarb_perm permea 95.4 1.5 3.2E-05 40.0 16.7 51 2-53 223-273 (475)
47 TIGR00912 2A0309 spore germina 94.6 1 2.2E-05 39.3 12.8 149 2-159 189-351 (359)
48 KOG1286|consensus 91.6 3.1 6.7E-05 39.0 11.6 155 2-159 242-420 (554)
49 COG1914 MntH Mn2+ and Fe2+ tra 91.2 11 0.00024 34.0 16.8 83 106-188 322-409 (416)
50 PRK00701 manganese transport p 88.7 19 0.0004 32.8 16.4 81 71-155 305-391 (439)
51 PF00324 AA_permease: Amino ac 84.3 0.84 1.8E-05 41.5 2.9 52 2-54 210-261 (478)
52 COG1457 CodB Purine-cytosine p 84.2 33 0.00071 31.3 15.7 138 14-158 216-358 (442)
53 PF05805 L6_membrane: L6 membr 79.4 27 0.00059 28.1 9.4 64 133-196 44-117 (195)
54 TIGR00800 ncs1 NCS1 nucleoside 75.8 59 0.0013 29.3 11.9 138 10-151 226-378 (442)
55 COG1113 AnsP Gamma-aminobutyra 75.8 18 0.00038 33.1 8.2 156 2-161 213-388 (462)
56 TIGR00945 tatC Twin arginine t 67.2 67 0.0015 26.1 13.2 41 65-105 52-92 (215)
57 PRK11375 allantoin permease; P 63.3 1.2E+02 0.0026 27.9 11.1 98 49-151 287-392 (484)
58 TIGR02358 thia_cytX probable h 58.5 1.3E+02 0.0029 26.6 15.6 126 12-148 193-320 (386)
59 PF00902 TatC: Sec-independent 58.5 97 0.0021 25.0 13.1 96 65-160 56-174 (215)
60 cd08764 Cyt_b561_CG1275_like N 57.4 45 0.00097 27.3 6.5 81 12-93 43-123 (214)
61 COG1953 FUI1 Cytosine/uracil/t 54.6 1.4E+02 0.003 27.8 9.7 111 39-151 290-406 (497)
62 KOG4812|consensus 54.5 37 0.00081 28.3 5.5 73 115-191 159-245 (262)
63 PRK10921 twin-arginine protein 53.1 1.4E+02 0.003 25.1 12.9 93 67-159 65-179 (258)
64 TIGR00813 sss transporter, SSS 51.4 1.7E+02 0.0038 25.8 13.9 38 14-51 223-260 (407)
65 PF07954 DUF1689: Protein of u 51.0 34 0.00074 26.4 4.5 65 137-201 33-98 (152)
66 CHL00182 tatC Sec-independent 50.5 1.5E+02 0.0032 24.8 13.1 39 66-104 74-112 (249)
67 KOG2082|consensus 49.6 2.8E+02 0.006 27.6 11.0 120 16-140 434-574 (1075)
68 smart00756 VKc Family of likel 48.4 45 0.00098 25.2 4.9 47 170-217 3-53 (142)
69 KOG1289|consensus 48.3 2.4E+02 0.0052 26.5 16.6 51 3-54 263-313 (550)
70 PF12606 RELT: Tumour necrosis 48.0 65 0.0014 19.9 4.6 40 176-215 5-45 (50)
71 PF03845 Spore_permease: Spore 45.0 1.9E+02 0.0042 24.5 9.3 97 6-104 189-295 (320)
72 KOG1288|consensus 44.7 3.2E+02 0.0069 26.9 11.2 36 14-50 316-351 (945)
73 TIGR00796 livcs branched-chain 44.0 2.4E+02 0.0051 25.2 14.8 34 118-157 312-345 (378)
74 TIGR00327 secE_euk_arch protei 36.1 1.2E+02 0.0026 19.6 4.9 35 14-52 16-50 (61)
75 cd08766 Cyt_b561_ACYB-1_like P 34.4 80 0.0017 24.1 4.3 76 14-93 29-104 (144)
76 COG0398 Uncharacterized conser 34.0 1.9E+02 0.0041 23.7 6.8 32 124-155 75-106 (223)
77 PRK09400 secE preprotein trans 33.6 1.3E+02 0.0029 19.3 4.7 34 14-51 20-53 (61)
78 PTZ00478 Sec superfamily; Prov 33.1 1.4E+02 0.003 20.5 4.8 34 14-51 33-66 (81)
79 PRK11017 codB cytosine permeas 31.5 3.8E+02 0.0081 23.9 12.0 106 33-148 223-329 (404)
80 TIGR01912 TatC-Arch Twin argin 29.9 3.2E+02 0.0069 22.6 14.1 40 66-105 61-100 (237)
81 PLN02680 carbon-monoxide oxyge 29.8 1.8E+02 0.0039 24.1 5.9 68 24-93 76-143 (232)
82 PRK14889 VKOR family protein; 29.4 1.6E+02 0.0034 22.4 5.2 47 171-218 8-55 (143)
83 PRK09598 lipid A phosphoethano 28.0 5E+02 0.011 24.2 10.4 16 146-161 128-143 (522)
84 PF12669 P12: Virus attachment 27.1 1.1E+02 0.0024 19.4 3.4 11 208-218 43-53 (58)
85 KOG1619|consensus 27.0 2.6E+02 0.0057 23.3 6.3 70 21-93 82-152 (245)
86 COG3125 CyoD Heme/copper-type 26.4 2.6E+02 0.0056 20.4 8.9 64 106-169 14-80 (111)
87 PRK15419 proline:sodium sympor 24.9 5.4E+02 0.012 23.6 15.5 16 39-54 283-298 (502)
88 PF02133 Transp_cyt_pur: Perme 23.1 52 0.0011 29.4 1.8 136 13-153 223-369 (440)
89 PF07423 DUF1510: Protein of u 22.4 1.3E+02 0.0028 24.7 3.8 31 23-56 9-40 (217)
90 PRK10263 DNA translocase FtsK; 21.8 9.8E+02 0.021 25.4 16.4 35 18-52 13-47 (1355)
91 cd08762 Cyt_b561_CYBASC3 Verte 21.7 2.8E+02 0.0061 22.0 5.4 68 24-93 67-134 (179)
92 PF01102 Glycophorin_A: Glycop 21.4 1.4E+02 0.0031 22.1 3.5 25 172-196 65-89 (122)
93 PRK10582 cytochrome o ubiquino 21.4 3.3E+02 0.0071 19.8 8.8 23 146-168 55-77 (109)
94 PF03203 MerC: MerC mercury re 21.1 3E+02 0.0065 19.8 5.2 16 172-187 67-82 (116)
95 PRK10484 putative transporter; 21.0 6.6E+02 0.014 23.1 16.4 40 15-54 265-307 (523)
96 PF03134 TB2_DP1_HVA22: TB2/DP 20.3 3E+02 0.0064 18.8 5.0 25 137-161 2-26 (94)
97 PF07884 VKOR: Vitamin K epoxi 20.3 1.9E+02 0.0042 21.3 4.2 44 174-218 4-50 (137)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.6e-35 Score=267.51 Aligned_cols=196 Identities=16% Similarity=0.251 Sum_probs=173.3
Q ss_pred CeEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCc-CCCChHHHHHHHHHH
Q psy14877 1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENY-CWYDDLMNLARLAFS 79 (221)
Q Consensus 1 i~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~~~~~ 79 (221)
++|||.||.+++++++|||||+++|+.+++..++.+++++|..+|++||+.|||++++++++|+ |.+|+...++++++.
T Consensus 265 ~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~ 344 (467)
T PTZ00206 265 FIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVL 344 (467)
T ss_pred HHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999999999 456788999999999
Q ss_pred HHHHhhhhhhhhHHHHHHHHHhccc--CCCCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHhhhhhHhh
Q psy14877 80 FTILLTYPIECLVTRSVLLQVLNAY--HSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYL 157 (221)
Q Consensus 80 i~~~~s~pl~~~p~~~~~~~~l~~~--~~~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~fi~P~l~yl 157 (221)
+.++++||++.+|+|+.+++.+..+ +.+++++...+..++.++.++|+.+|+++.+++++||++++.++|++|+++|+
T Consensus 345 ~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l 424 (467)
T PTZ00206 345 VKLFVSYALLGMACRNALYDVIGWDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFM 424 (467)
T ss_pred HHHHHhhhhhhhhHHHHHHHHhCCCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987433 33445666667777778889999999999999999999999999999999999
Q ss_pred hhc---cCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy14877 158 KLE---SGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQS 196 (221)
Q Consensus 158 ~~~---~~~~~~~~~i~~~~i~~~Gv~~~v~g~~~~i~~~~~ 196 (221)
+.. +++..+++.+.+++++++|++..+.|||+++++.+.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~~ 466 (467)
T PTZ00206 425 YSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVTV 466 (467)
T ss_pred hcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHhc
Confidence 842 223333455789999999999999999999998763
No 2
>KOG1304|consensus
Probab=100.00 E-value=3.5e-35 Score=258.30 Aligned_cols=190 Identities=21% Similarity=0.323 Sum_probs=177.2
Q ss_pred eEEeechhhHHHHHHHhhccchHhHH---HHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWD---KLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAF 78 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~---~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~ 78 (221)
+|||.++.++.|++++||+|+ +|. ++++.++.+++++|..+|++||++|||++++.|++|+|+ +++.+.+|+++
T Consensus 251 ifafEGig~VLPlEn~Mk~P~--~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ 327 (449)
T KOG1304|consen 251 IFAFEGIGMVLPLENSMKKPQ--KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLL 327 (449)
T ss_pred HHHhccceEEEehhhcccChh--hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHH
Confidence 589999999999999999999 888 999999999999999999999999999999999999997 99999999999
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHhccc---CCCCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHhhhhhH
Q psy14877 79 SFTILLTYPIECLVTRSVLLQVLNAY---HSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALS 155 (221)
Q Consensus 79 ~i~~~~s~pl~~~p~~~~~~~~l~~~---~~~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~fi~P~l~ 155 (221)
++.+.+|||+|++|..+++|+.+.++ +..++..+.+|..+++++..+|..+|+++.+++++||++++.+++++|+++
T Consensus 328 ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~li 407 (449)
T KOG1304|consen 328 AIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLI 407 (449)
T ss_pred HHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHH
Confidence 99999999999999999999987765 224566788999999999999999999999999999999999999999999
Q ss_pred hhhhccCC---cccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 156 YLKLESGS---IFSKQKLPALGLALFGVMVAFVGLIQILYAI 194 (221)
Q Consensus 156 yl~~~~~~---~~~~~~i~~~~i~~~Gv~~~v~g~~~~i~~~ 194 (221)
+++..+++ ..+|+.+.+.+++++|++.++.|||+++.++
T Consensus 408 el~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 408 ELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 99986543 4568899999999999999999999999874
No 3
>KOG1305|consensus
Probab=99.97 E-value=5.9e-31 Score=232.71 Aligned_cols=195 Identities=31% Similarity=0.542 Sum_probs=182.6
Q ss_pred CeEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChH------HHHH
Q psy14877 1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDL------MNLA 74 (221)
Q Consensus 1 i~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~------~~~~ 74 (221)
++|||.||+|+.|+++|||||++++++++...+...+.++|..+|.+||+.|||++++|++.++|+++.. ...+
T Consensus 203 ~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~v 282 (411)
T KOG1305|consen 203 FVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCV 282 (411)
T ss_pred hheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999999975433 4789
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHhccc-----CCCCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHH
Q psy14877 75 RLAFSFTILLTYPIECLVTRSVLLQVLNAY-----HSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAF 149 (221)
Q Consensus 75 ~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~-----~~~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~f 149 (221)
|..+.++++.++|++.+|+|..+++.+.++ +.++.|+++++..++..+.+.|+.+|+++.+++++||+++..++|
T Consensus 283 r~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~F 362 (411)
T KOG1305|consen 283 RLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISF 362 (411)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHH
Confidence 999999999999999999999999988876 267899999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy14877 150 ILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQSG 197 (221)
Q Consensus 150 i~P~l~yl~~~~~~~~~~~~i~~~~i~~~Gv~~~v~g~~~~i~~~~~~ 197 (221)
++|+++|++..|+ ..+++...++..++|+...+.|+...+.++..+
T Consensus 363 I~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 363 ILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999877 557888999999999999999999999999874
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.97 E-value=1.1e-32 Score=244.04 Aligned_cols=191 Identities=31% Similarity=0.465 Sum_probs=172.7
Q ss_pred CeEEeechhhHHHHHHHhhccch-HhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHHH
Q psy14877 1 MDGAFMCHHNVFLLYESIEGASQ-FVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFS 79 (221)
Q Consensus 1 i~Faf~~h~~v~~i~~~m~~p~~-~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~ 79 (221)
++|||.||++++++++|||+|++ +|+.++...++.+++++|..+|++||++|||++++|+++|+|++++...++++++.
T Consensus 201 ~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~ 280 (409)
T PF01490_consen 201 IIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLV 280 (409)
T ss_pred hhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccch
Confidence 47899999999999999999996 56669999999999999999999999999999999999999987789999999999
Q ss_pred HHHHhhhhhhhhHHHHHHHHHhccc-----------CCCCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHH
Q psy14877 80 FTILLTYPIECLVTRSVLLQVLNAY-----------HSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLA 148 (221)
Q Consensus 80 i~~~~s~pl~~~p~~~~~~~~l~~~-----------~~~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~ 148 (221)
++++.+||++.+|.|+.+++.+.+. +.++++|...|+.++.+++++|+.+|+++++++++||++++.++
T Consensus 281 i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~ 360 (409)
T PF01490_consen 281 ISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFIS 360 (409)
T ss_pred hhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHH
Confidence 9999999999999999999998751 23467789999999999999999999999999999999999999
Q ss_pred HhhhhhHhhhhccCCcccch-----hhhHHHHHHHHHHHHHHHHHHHH
Q psy14877 149 FILPALSYLKLESGSIFSKQ-----KLPALGLALFGVMVAFVGLIQIL 191 (221)
Q Consensus 149 fi~P~l~yl~~~~~~~~~~~-----~i~~~~i~~~Gv~~~v~g~~~~i 191 (221)
|++|+++|+|.++++..+++ ....++++++|++.++.|+|+++
T Consensus 361 fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 361 FILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred HHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 99999999998776433222 24578889999999999999886
No 5
>PLN03074 auxin influx permease; Provisional
Probab=99.96 E-value=1.8e-29 Score=227.94 Aligned_cols=211 Identities=11% Similarity=0.053 Sum_probs=174.3
Q ss_pred CeEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcch--hhhcCcCCCChHHHHHHHHH
Q psy14877 1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQG--DLLENYCWYDDLMNLARLAF 78 (221)
Q Consensus 1 i~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~ 78 (221)
++|||.+|..+|++++|||||+ +|++++..+.+.+++.|..+|+.||+.|||++++ +.+.|+|+ +.+.+++++++
T Consensus 242 i~faf~g~~v~~~I~~~M~~P~--~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~-~~~~~~~~~~~ 318 (473)
T PLN03074 242 ILYTFGGHAVTVEIMHAMWKPQ--KFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPR-SGWRDAAVILM 318 (473)
T ss_pred HHHHhcccccHHHHHHhccChh--cccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCC-chHHHHHHHHH
Confidence 3689999999999999999998 8999989999999999999999999999999754 56777885 45678999999
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHhccc-CCCCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHhhhhhHhh
Q psy14877 79 SFTILLTYPIECLVTRSVLLQVLNAY-HSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYL 157 (221)
Q Consensus 79 ~i~~~~s~pl~~~p~~~~~~~~l~~~-~~~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~fi~P~l~yl 157 (221)
.++++.+||++..|.-+.+|+.+..+ ......|.++|+.+++.++++|..+|+++++++++||++++.++|++|+++|+
T Consensus 319 ~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l 398 (473)
T PLN03074 319 LIHQFITFGFACTPLYFVWEKAIGVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHM 398 (473)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987543 22345578899999999999999999999999999999999999999999999
Q ss_pred hhccCC-------------cccc--hhhhHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcccccc
Q psy14877 158 KLESGS-------------IFSK--QKLPALGLALF-GVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYCNKTQ 215 (221)
Q Consensus 158 ~~~~~~-------------~~~~--~~i~~~~i~~~-Gv~~~v~g~~~~i~~~~~~~~~~~~~~~~~~~c~~~~ 215 (221)
+.++++ ..+| ..+.+++++++ |++..+.|+|.++.++++...+ ...-.+-+.|.+++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~-~~~f~~~~~c~~~~ 471 (473)
T PLN03074 399 LTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDT-FGLFAKCYQCPPPS 471 (473)
T ss_pred HHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhh-hhhhhhhccCCCCC
Confidence 854321 1122 35788888875 6666789999999999985543 12233346776543
No 6
>KOG1303|consensus
Probab=99.96 E-value=6.3e-28 Score=214.58 Aligned_cols=194 Identities=20% Similarity=0.266 Sum_probs=173.2
Q ss_pred CeEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHHHH
Q psy14877 1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSF 80 (221)
Q Consensus 1 i~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i 80 (221)
++|+|.+|..+|+||++||+|+ +|++++..++.+++.+|..+++.||++|||+++++++.|++++.++...++++..+
T Consensus 237 iaFaf~gH~v~peIq~tMk~p~--~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~ 314 (437)
T KOG1303|consen 237 IAFAYGGHAVLPEIQHTMKSPP--KFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVL 314 (437)
T ss_pred eeeeecCCeeeeehHhhcCCch--hhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHH
Confidence 5899999999999999999999 79999999999999999999999999999999999999996446899999999999
Q ss_pred HHHhhhhhhhhHHHHHHHHHhcccCC-----CCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHhhhhhH
Q psy14877 81 TILLTYPIECLVTRSVLLQVLNAYHS-----TDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALS 155 (221)
Q Consensus 81 ~~~~s~pl~~~p~~~~~~~~l~~~~~-----~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~fi~P~l~ 155 (221)
|++.++.....|.-+.+|+....++. ....|.+.|..+++.+.++|+.+|.++++.+++||+...++++++|+++
T Consensus 315 h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~ 394 (437)
T KOG1303|consen 315 HLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLM 394 (437)
T ss_pred HHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875422 3347899999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHc
Q psy14877 156 YLKLESGSIFSKQKLPALGL-ALFGVMVAFVGLIQILYAIQS 196 (221)
Q Consensus 156 yl~~~~~~~~~~~~i~~~~i-~~~Gv~~~v~g~~~~i~~~~~ 196 (221)
|++.++.++...++...+.+ .++|++.++.....++++++.
T Consensus 395 yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 395 YLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLII 436 (437)
T ss_pred HHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99986654444555666666 688888888888888877754
No 7
>KOG4303|consensus
Probab=99.91 E-value=3.1e-26 Score=193.59 Aligned_cols=193 Identities=19% Similarity=0.252 Sum_probs=177.0
Q ss_pred CeEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHHHH
Q psy14877 1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSF 80 (221)
Q Consensus 1 i~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i 80 (221)
|+|+|+.|..+|....+|++|+ +|.-.+.++-+...++-..+|..||++|+|.++..|.+|+|. +.+...+++++.+
T Consensus 311 iVFsYTSqIFLP~LEGNM~~ps--~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qsfk~~VN~fLV~ 387 (524)
T KOG4303|consen 311 IVFSYTSQIFLPNLEGNMKNPS--QFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QSFKILVNLFLVV 387 (524)
T ss_pred EEEeeeceeeccccccccCChh--HheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cchhhhhhHHHHH
Confidence 5899999999999999999999 788899999999999999999999999999999999999984 6788899999999
Q ss_pred HHHhhhhhhhhHHHHHHHHHhccc----C-------CCCch--hhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhH
Q psy14877 81 TILLTYPIECLVTRSVLLQVLNAY----H-------STDKQ--HVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPL 147 (221)
Q Consensus 81 ~~~~s~pl~~~p~~~~~~~~l~~~----~-------~~~~~--~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l 147 (221)
..++|||+..+.+.+.+|+-++.+ + ....+ -+.+|++++..+.+.|+.+|.+..+++++|++.+..+
T Consensus 388 KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmL 467 (524)
T KOG4303|consen 388 KALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTML 467 (524)
T ss_pred HHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccH
Confidence 999999999999999999988765 1 11122 3557999999999999999999999999999999999
Q ss_pred HHhhhhhHhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy14877 148 AFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQS 196 (221)
Q Consensus 148 ~fi~P~l~yl~~~~~~~~~~~~i~~~~i~~~Gv~~~v~g~~~~i~~~~~ 196 (221)
+|+.|++||++++++.+...++..+..++++|+...+.|.|.+..++++
T Consensus 468 sFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~ 516 (524)
T KOG4303|consen 468 SFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIR 516 (524)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHH
Confidence 9999999999999888777788999999999999999999999999988
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.60 E-value=3.4e-14 Score=126.90 Aligned_cols=189 Identities=18% Similarity=0.178 Sum_probs=140.6
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFT 81 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~ 81 (221)
+|||.||++++++++||+++++++.+++...+..+..++|..+++++|..+|+.+.++++++++++ ......+......
T Consensus 203 vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~-~~~l~~~~~~~~~ 281 (415)
T COG0814 203 VFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQN-ISLLSALAGVINS 281 (415)
T ss_pred HhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCch-HHHHHHHHHhhcc
Confidence 689999999999999999999766999999999999999999999999999999999999999864 3333344444444
Q ss_pred HHhhhhhhhhHHHHHHHH--------------Hhccc--C---C-CC-chhhhHHHHHHHHHHHHHHhccchHHHHHHhh
Q psy14877 82 ILLTYPIECLVTRSVLLQ--------------VLNAY--H---S-TD-KQHVGFTLAIVLITYFISITTDCLGVVLELNG 140 (221)
Q Consensus 82 ~~~s~pl~~~p~~~~~~~--------------~l~~~--~---~-~~-~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~G 140 (221)
...++|.+.++....... .+.++ + . .+ ..+....+.++......+...|+.+.+++.+|
T Consensus 282 ~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ig 361 (415)
T COG0814 282 PILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIG 361 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 446666666665544333 22211 0 0 11 12233455556666677888999999999999
Q ss_pred hhhhhhHHHhhhhhHhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy14877 141 VLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQIL 191 (221)
Q Consensus 141 a~~~~~l~fi~P~l~yl~~~~~~~~~~~~i~~~~i~~~Gv~~~v~g~~~~i 191 (221)
+...+.+.++.|...+.|....+..+.++...++++++|+..+....+...
T Consensus 362 a~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 362 APIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLATF 412 (415)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998887654333333235778999999998887776553
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.05 E-value=5.3e-09 Score=92.29 Aligned_cols=156 Identities=21% Similarity=0.142 Sum_probs=118.5
Q ss_pred EEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchh-------------hhcC-cCCCC
Q psy14877 3 GAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGD-------------LLEN-YCWYD 68 (221)
Q Consensus 3 Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~-------------il~~-~~~~~ 68 (221)
++|.+|.+++++.++++++ +|+.+|+...+..+++++|+.+........+.+.-.+ ...+ .. +.
T Consensus 189 ~~fg~~~~i~~~~~~~~~~-~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-~~ 266 (381)
T TIGR00837 189 TSFGFHGNVPSLYKYYDGN-VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLK-SS 266 (381)
T ss_pred HHHHcccccHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhcc-ch
Confidence 4678888899999999867 5689999999999999999988776665554321111 1111 11 22
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhccchH-HHHHHhhhhhhhhH
Q psy14877 69 DLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDCLG-VVLELNGVLAAVPL 147 (221)
Q Consensus 69 ~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~ip~~~-~~~~l~Ga~~~~~l 147 (221)
+...+...+-.+.+.+|+.-.....+|.+.+.+.++. ++.+|.....+..+...++|.+.|+.. ..++..| +.+..+
T Consensus 267 ~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~-~~~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~ 344 (381)
T TIGR00837 267 AIELALELFSNFALASSFLGVTLGLFDYLADLFKFDD-SKKGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIW 344 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-ccCCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHH
Confidence 3556777888888999999989999999888876642 223355666777788888999999877 8999999 888899
Q ss_pred HHhhhhhHhhhhccC
Q psy14877 148 AFILPALSYLKLESG 162 (221)
Q Consensus 148 ~fi~P~l~yl~~~~~ 162 (221)
.+++|+++++|.+++
T Consensus 345 ~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 345 AVIIPALLAWKARKK 359 (381)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999997654
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.77 E-value=6.9e-07 Score=79.55 Aligned_cols=179 Identities=20% Similarity=0.161 Sum_probs=124.4
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHH--HHHHH---------hcccCcch--hhhcCcCCCC
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFG--IAGYA---------TFTGNVQG--DLLENYCWYD 68 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g--~~gy~---------~fg~~~~~--~il~~~~~~~ 68 (221)
.+||..|..+|++.+.+++- +||.+++......+..++|+..- +.|-+ .-+++..+ ..+.+...+.
T Consensus 194 ~~Sf~f~~ivPsl~~~~~~d-~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 272 (394)
T PF03222_consen 194 VFSFGFHNIVPSLVKYLGGD-PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSP 272 (394)
T ss_pred HHHHHHHhhhHHHHHHhCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCc
Confidence 57899999999999999744 44788888888888888888753 33311 11111111 2233333334
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhhH
Q psy14877 69 DLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDC-LGVVLELNGVLAAVPL 147 (221)
Q Consensus 69 ~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~ip~-~~~~~~l~Ga~~~~~l 147 (221)
.....+.++-.+.+.+||-=.....+|.+.+.++.++. ...|........+...++|+..|+ +-..+++.| .....+
T Consensus 273 ~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~~-~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il 350 (394)
T PF03222_consen 273 WISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKNN-SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAIL 350 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHH
Confidence 55667788889999999998888999999999876432 334455556667777888988884 568999999 888999
Q ss_pred HHhhhhhHhhhhccCCcc-cc----hhhhHHHHHHHHHHHH
Q psy14877 148 AFILPALSYLKLESGSIF-SK----QKLPALGLALFGVMVA 183 (221)
Q Consensus 148 ~fi~P~l~yl~~~~~~~~-~~----~~i~~~~i~~~Gv~~~ 183 (221)
..++|+++.+|.++++.. .+ .+....+++++|++..
T Consensus 351 ~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 351 LGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred HHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHH
Confidence 999999999998654321 12 2445556666665544
No 11
>PRK10483 tryptophan permease; Provisional
Probab=98.66 E-value=1.3e-06 Score=78.03 Aligned_cols=183 Identities=18% Similarity=0.071 Sum_probs=127.1
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHH--HHHHHh---------cccCcchhhhcCcC---CC
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFG--IAGYAT---------FTGNVQGDLLENYC---WY 67 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g--~~gy~~---------fg~~~~~~il~~~~---~~ 67 (221)
.+||..|.++|++.+.+++.. +|.+++...+..+..++|+..= +.|-.. -+++++ ..+..+. ++
T Consensus 202 ~~SFgfh~iIPsl~~y~~~d~-~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~-~L~~~l~~~~~~ 279 (414)
T PRK10483 202 LASFGYHGNVPSLMKYYGKDP-KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID-VLVQALSGVLNS 279 (414)
T ss_pred HhhccCCCcchHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH-HHHHHHHHhcCC
Confidence 589999999999999987433 4889999999999999998843 333222 222221 1112221 22
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhh
Q psy14877 68 DDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDC-LGVVLELNGVLAAVP 146 (221)
Q Consensus 68 ~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~ip~-~~~~~~l~Ga~~~~~ 146 (221)
........++-.+.+.+||-=.....+|.+.+.++.++. ...|...-....+...++|...|+ |-..++..|.. ...
T Consensus 280 ~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~-~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~i 357 (414)
T PRK10483 280 RSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS-AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATI 357 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHH
Confidence 344566778888899999988888999999999876532 233455556678888999999997 77899999987 566
Q ss_pred HHHhhhhhHhhhhccC-Ccccc----hhhhHHHHHHHHHHHHHHHHH
Q psy14877 147 LAFILPALSYLKLESG-SIFSK----QKLPALGLALFGVMVAFVGLI 188 (221)
Q Consensus 147 l~fi~P~l~yl~~~~~-~~~~~----~~i~~~~i~~~Gv~~~v~g~~ 188 (221)
+.-++|+++.+|.+|+ +...+ .|..-.+++++|+...+.-..
T Consensus 358 l~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~~~i~~~i~ 404 (414)
T PRK10483 358 WAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGVGNALVHIL 404 (414)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999998764 22222 234446666777666654443
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.60 E-value=2.7e-06 Score=75.86 Aligned_cols=184 Identities=15% Similarity=0.100 Sum_probs=131.1
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----ch-----hhhcCcC---CCC
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNV-----QG-----DLLENYC---WYD 68 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~-----~~-----~il~~~~---~~~ 68 (221)
.+||..|..+|++.+.+++ +.+|.+|+...+.++..++|+..=......-+.+. ++ ++++.+. +..
T Consensus 191 ~~SFgfh~iIpsl~~y~~~-~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 269 (403)
T PRK15132 191 FTSFGFHGSVPSIVSYMGG-NIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASP 269 (403)
T ss_pred HHHhhCCcccHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccCh
Confidence 5799999999999999864 44578899999999988888877554444333221 11 2222222 233
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhccch-HHHHHHhhhhhhhhH
Q psy14877 69 DLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDCL-GVVLELNGVLAAVPL 147 (221)
Q Consensus 69 ~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~ip~~-~~~~~l~Ga~~~~~l 147 (221)
+....+..+-.+.+.+||-=.....+|.+.+.+..++. ...|........+...++|+..|+. ....++.|. ....+
T Consensus 270 ~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~-~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail 347 (403)
T PRK15132 270 HVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT-VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVL 347 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc-ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHH
Confidence 55667777778888999988888999999998865422 2335666777888888999999865 678888776 46789
Q ss_pred HHhhhhhHhhhhccCC-cccc----hhhhHHHHHHHHHHHHHHHHH
Q psy14877 148 AFILPALSYLKLESGS-IFSK----QKLPALGLALFGVMVAFVGLI 188 (221)
Q Consensus 148 ~fi~P~l~yl~~~~~~-~~~~----~~i~~~~i~~~Gv~~~v~g~~ 188 (221)
.+++|+++.+|.++++ ..+. .|...++++++|++..+.-..
T Consensus 348 ~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~~~ 393 (403)
T PRK15132 348 ALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQFL 393 (403)
T ss_pred HHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987643 1112 356678888888877765443
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.46 E-value=1.1e-05 Score=72.10 Aligned_cols=183 Identities=16% Similarity=0.054 Sum_probs=124.0
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHH--HHHHHH---------hcccCcchh---hhcCcCCC
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLF--GIAGYA---------TFTGNVQGD---LLENYCWY 67 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~--g~~gy~---------~fg~~~~~~---il~~~~~~ 67 (221)
.+||+.|+++|++.+.+++.. ++.+++......+..++|+.- .+.|-+ .-|+++.+- ...+ .+.
T Consensus 203 ~~SFgfh~iIPsl~~y~~~d~-~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~~ 280 (415)
T PRK09664 203 LASFGFHGNIPSLIICYGKRK-DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQH 280 (415)
T ss_pred HHhhhCCCcchHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-ccC
Confidence 478999999999999987443 355666666666666677443 222311 222233221 1112 223
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhh
Q psy14877 68 DDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDC-LGVVLELNGVLAAVP 146 (221)
Q Consensus 68 ~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~ip~-~~~~~~l~Ga~~~~~ 146 (221)
.+......++-.+.+.+||-=......|.+.+.++.++. ...|...-....+...+.|...|+ |-..++..|.. ...
T Consensus 281 ~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~-~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~i 358 (415)
T PRK09664 281 GIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS-HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATI 358 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHH
Confidence 455667778888899999988888999999998866532 234555566678888899999997 78899999996 557
Q ss_pred HHHhhhhhHhhhhccC-Ccccc----hhhhHHHHHHHHHHHHHHHHH
Q psy14877 147 LAFILPALSYLKLESG-SIFSK----QKLPALGLALFGVMVAFVGLI 188 (221)
Q Consensus 147 l~fi~P~l~yl~~~~~-~~~~~----~~i~~~~i~~~Gv~~~v~g~~ 188 (221)
+.-++|+++-||.+++ +...+ .|..-.+.+++|++..+.-..
T Consensus 359 l~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~~~~ 405 (415)
T PRK09664 359 WAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILCWFG 405 (415)
T ss_pred HHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999998765 21111 255566777777776664443
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.25 E-value=3.2e-05 Score=69.45 Aligned_cols=187 Identities=13% Similarity=0.090 Sum_probs=130.0
Q ss_pred eEEeechhhHHHHHHHhhcc-------c--hHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----chhh--h----
Q psy14877 2 DGAFMCHHNVFLLYESIEGA-------S--QFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNV-----QGDL--L---- 61 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p-------~--~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~-----~~~i--l---- 61 (221)
+|||..|+.+++....+|+. + .+|.+++...+.++..++|+..-+..-..-+.+- ++|+ +
T Consensus 219 v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La 298 (443)
T PRK13629 219 VFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLA 298 (443)
T ss_pred HHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHH
Confidence 57899999999998885333 3 5688899999999888888887666655554321 1111 1
Q ss_pred cCcCCC--------ChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcc----c-CC---CCchhhhHHHHHHHHHHHH
Q psy14877 62 ENYCWY--------DDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNA----Y-HS---TDKQHVGFTLAIVLITYFI 125 (221)
Q Consensus 62 ~~~~~~--------~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~----~-~~---~~~~~~~~~~~i~~~~~~l 125 (221)
+.++++ ........+.-.+.+.+||-=.....+|.++.++.+ . +. .+..+....+++.+.++.+
T Consensus 299 ~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (443)
T PRK13629 299 NHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVV 378 (443)
T ss_pred HHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHH
Confidence 112221 123445566666788888887788889999888742 1 11 1222556677888889999
Q ss_pred HHhccchHHHHHHhhhhhhhhHHHhhhhhHhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHH
Q psy14877 126 SITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQ 189 (221)
Q Consensus 126 A~~ip~~~~~~~l~Ga~~~~~l~fi~P~l~yl~~~~~~~~~~~~i~~~~i~~~Gv~~~v~g~~~ 189 (221)
++.=|++-.+++-+|+-....+.|++|...-+|...-++.| .+..++++++.|+++.....|.
T Consensus 379 ~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 379 AYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred HHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHHHHHHHHh
Confidence 99999999999988888888899999998887763322121 2335789999998887766554
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.10 E-value=1.7e-05 Score=70.80 Aligned_cols=177 Identities=11% Similarity=0.083 Sum_probs=120.2
Q ss_pred eEEeechhhHHHHHHHh----hccc--hHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----chh--hhcCcC---
Q psy14877 2 DGAFMCHHNVFLLYESI----EGAS--QFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNV-----QGD--LLENYC--- 65 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m----~~p~--~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~-----~~~--il~~~~--- 65 (221)
.|||..|..+++...+. +||+ .+|.+++...+..+..++|+..-+......+.+. ++| .+..+.
T Consensus 196 ~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~ 275 (397)
T TIGR00814 196 VFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHF 275 (397)
T ss_pred HHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhc
Confidence 57899999999998444 3233 5678889999999888888887776666665432 111 122111
Q ss_pred CCChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccc----C---CCCchhhhHHHHHHHHHHHHHHhccchHHHHHH
Q psy14877 66 WYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAY----H---STDKQHVGFTLAIVLITYFISITTDCLGVVLEL 138 (221)
Q Consensus 66 ~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~----~---~~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l 138 (221)
+......+....-.+.+..||-=.....+|.+.+++.+. + .++..+.....++.+.++..|+.=|++-.+++-
T Consensus 276 ~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~ 355 (397)
T TIGR00814 276 NAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEA 355 (397)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 123444556666677888888888889999999987311 1 112224455677788888999999999999998
Q ss_pred hhhhhhhhHHHhhhhhHhhhhccCCcccch-hhhHHHHHHHHH
Q psy14877 139 NGVLAAVPLAFILPALSYLKLESGSIFSKQ-KLPALGLALFGV 180 (221)
Q Consensus 139 ~Ga~~~~~l~fi~P~l~yl~~~~~~~~~~~-~i~~~~i~~~Gv 180 (221)
+|+-....+.|++|...-.|...-+ ++| +..++++++.|+
T Consensus 356 ~~gp~~a~i~~~~p~~~~~~v~~l~--~~~~~~~~~fv~~~g~ 396 (397)
T TIGR00814 356 LGGPIIAMILFLMPMYAIYKVPALK--KYRGRISNVFVTVIGL 396 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHccHHHH--HhCCCcchheeEeeec
Confidence 8888888899999998887763211 122 244666666664
No 16
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.48 E-value=0.0093 Score=53.82 Aligned_cols=47 Identities=15% Similarity=-0.031 Sum_probs=40.6
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGY 49 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy 49 (221)
.|+|.+-.......+|+|||++ +.+++...+..++.++|.+..+.-.
T Consensus 201 ~~af~G~e~~~~~aeE~k~P~r-~iPrai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 201 LWSFIGVESASVAAGVVKNPKR-NVPIATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred HHHHHhHHHHHHHHHHhhCccc-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888889999999999985 6899999999999999999887643
No 17
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.36 E-value=0.017 Score=52.65 Aligned_cols=48 Identities=6% Similarity=-0.059 Sum_probs=39.6
Q ss_pred EEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14877 3 GAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYAT 51 (221)
Q Consensus 3 Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~ 51 (221)
|+|.+-..+....+|+|||++ +.+++...+...+.++|....+.-...
T Consensus 205 ~af~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~ 252 (474)
T TIGR03813 205 LFYAGMEMNAVHVKDVDNPDK-NYPIAILIAALGTVLIFVLGTLAIAFI 252 (474)
T ss_pred HHHhchhHhHHHHHhccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888888899999999985 689999999999999998766554333
No 18
>PRK11021 putative transporter; Provisional
Probab=97.27 E-value=0.033 Score=49.67 Aligned_cols=45 Identities=11% Similarity=0.038 Sum_probs=40.0
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIA 47 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~ 47 (221)
.|+|.+-..+....+|+|||++ +.+++...+...+.++|+.....
T Consensus 187 ~~af~G~e~~~~~a~E~k~P~k-~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 187 FWCFVGIEAFAHLASEFKNPER-DFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHhcHHHHHhhHHhccCccc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 3688899999999999999985 68999999999999999998754
No 19
>PRK10655 potE putrescine transporter; Provisional
Probab=97.26 E-value=0.027 Score=50.64 Aligned_cols=47 Identities=11% Similarity=-0.108 Sum_probs=39.9
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGY 49 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy 49 (221)
.|+|.+-..+..+.+|+|||++ +.+++...+..++.++|++......
T Consensus 199 ~~af~G~e~~~~~a~E~k~P~r-~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 199 LWAFLGLESACANSDAVENPER-NVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHhhhhhhhhhHHHhhCccc-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888889999999999985 6899999999999999998765443
No 20
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.16 E-value=0.022 Score=51.36 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=39.6
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAG 48 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~g 48 (221)
.|+|.+-..+..+.+|+|||+| +.+++...++.++.++|.......
T Consensus 205 ~~af~G~e~~~~~a~E~k~P~r-~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 205 SWSYTGMASICYMTGEIKNPGK-TMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHhhHHHHHhhHHHhcCccc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888889999999999985 689999999999999999876643
No 21
>TIGR00909 2A0306 amino acid transporter.
Probab=97.03 E-value=0.03 Score=50.09 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=40.0
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGY 49 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy 49 (221)
.|+|.+...+....+|+|||++ +.+|+...+..++.++|+.......
T Consensus 205 ~~af~G~e~~~~~~~E~~~p~r-~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 205 FFAFIGFEAISTAAEEVKNPER-DIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred HHHHhhHHHHHhhHHhccCccc-cccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888999999999999974 6889999999999999999876544
No 22
>KOG1287|consensus
Probab=97.02 E-value=0.0099 Score=53.95 Aligned_cols=162 Identities=8% Similarity=0.059 Sum_probs=98.4
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCcchhhh-cCcCCC--ChHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFT--GNVQGDLL-ENYCWY--DDLMNLARL 76 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg--~~~~~~il-~~~~~~--~~~~~~~~~ 76 (221)
.|||.+=..+=.+.+|+|||.| .++++..+++.+++++|+.+=+..+-.-- |-..+|.. ..+.+. ..+.....+
T Consensus 214 lfa~~GWd~lN~vteEiknP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~ 292 (479)
T KOG1287|consen 214 LFAFSGWDYLNYVTEEIKNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPF 292 (479)
T ss_pred hhcccCchhhccchHhhcCccc-cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHH
Confidence 4788888888889999999985 69999999999999999998664433321 11111111 111110 122244455
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhccc--C----CCCchhh--hHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHH
Q psy14877 77 AFSFTILLTYPIECLVTRSVLLQVLNAY--H----STDKQHV--GFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLA 148 (221)
Q Consensus 77 ~~~i~~~~s~pl~~~p~~~~~~~~l~~~--~----~~~~~~~--~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~ 148 (221)
+..++.+-+.--.++...+.+...-+++ | +...++. ...++...+..++.....++..+++.++=.-.....
T Consensus 293 ~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~ 372 (479)
T KOG1287|consen 293 SVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRG 372 (479)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5555555555444555444444433332 1 0111111 122333334444455677899999999988888888
Q ss_pred HhhhhhHhhhhccCCc
Q psy14877 149 FILPALSYLKLESGSI 164 (221)
Q Consensus 149 fi~P~l~yl~~~~~~~ 164 (221)
+.+=+++++|.++.+.
T Consensus 373 l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 373 LSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHHHHHHHhhCCCC
Confidence 9999999999876543
No 23
>PRK10746 putative transport protein YifK; Provisional
Probab=97.00 E-value=0.094 Score=47.69 Aligned_cols=158 Identities=6% Similarity=-0.032 Sum_probs=84.6
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-Ccc---hhh---hcCcCCCChHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTG-NVQ---GDL---LENYCWYDDLMNLA 74 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~-~~~---~~i---l~~~~~~~~~~~~~ 74 (221)
.|+|.+-..+....+|.|||++ +.+++...++....++|......--..... +.. ++. ..+... .....+.
T Consensus 210 ~faf~G~e~v~~~a~E~knP~k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i~ 287 (461)
T PRK10746 210 VASYQGVELIGITAGEAKNPQV-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGII 287 (461)
T ss_pred HHHhcCHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHHH
Confidence 4788888999999999999985 689999888888888888864443332221 111 111 111110 1222333
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHhccc----------CCCCch-hhhHHHHHHHHHHHHHHhccchHHHHHHhhhhh
Q psy14877 75 RLAFSFTILLTYPIECLVTRSVLLQVLNAY----------HSTDKQ-HVGFTLAIVLITYFISITTDCLGVVLELNGVLA 143 (221)
Q Consensus 75 ~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~----------~~~~~~-~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~ 143 (221)
.....+..+.+.--.++...+.+..+=..+ +..... -+.+.....++...+....|+-+.+++.+-+.+
T Consensus 288 ~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~ 367 (461)
T PRK10746 288 NFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSAS 367 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 444444444444444444444444432222 111111 122222222222334445666666666655444
Q ss_pred h--hhHHHhhhhhHhhhhcc
Q psy14877 144 A--VPLAFILPALSYLKLES 161 (221)
Q Consensus 144 ~--~~l~fi~P~l~yl~~~~ 161 (221)
+ ..+.++++++-|+|.++
T Consensus 368 ~~~~~i~w~~i~~~~i~~r~ 387 (461)
T PRK10746 368 VLPGMVPWFVILISQLRFRR 387 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3 47888899888888754
No 24
>PRK11387 S-methylmethionine transporter; Provisional
Probab=96.96 E-value=0.091 Score=47.83 Aligned_cols=48 Identities=13% Similarity=-0.029 Sum_probs=40.3
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYA 50 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~ 50 (221)
.|+|.+-..+....+|+|||++ +.+++...+...+.++|+...+..-.
T Consensus 216 ~faf~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~~~~~y~~~~~~~~~ 263 (471)
T PRK11387 216 NFAFSGTELIGIAAGETENPAK-VIPVAIRTTIARLVIFFVGTVLVLAA 263 (471)
T ss_pred HHHHcCHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 4688888999999999999985 68999999999999999888765433
No 25
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=96.92 E-value=0.082 Score=47.84 Aligned_cols=156 Identities=12% Similarity=0.083 Sum_probs=82.6
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHh--cccC-cc--h---hhhcCcCCCChHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYAT--FTGN-VQ--G---DLLENYCWYDDLMNL 73 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~--fg~~-~~--~---~il~~~~~~~~~~~~ 73 (221)
.|+|.+-..+....+|+|||++ +.+++...++....++|+...+.--.. +.+. .+ + ...+.... .....+
T Consensus 191 ~faf~G~e~~~~~a~E~knP~r-~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-~~~~~i 268 (446)
T PRK10197 191 MFSFMGAEIVTIAAAESDTPEK-HIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNI-PHAKLI 268 (446)
T ss_pred HHHHhCHHHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCc-hHHHHH
Confidence 4788899999999999999985 689998888999999999876553222 2221 00 0 11222221 123344
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHhccc-------CCC---Cchh-hhHHHHHHHHHHHHHHhcc--chHHHHHHhh
Q psy14877 74 ARLAFSFTILLTYPIECLVTRSVLLQVLNAY-------HST---DKQH-VGFTLAIVLITYFISITTD--CLGVVLELNG 140 (221)
Q Consensus 74 ~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~-------~~~---~~~~-~~~~~~i~~~~~~lA~~ip--~~~~~~~l~G 140 (221)
......+..+.+.--.++...+.+..+=+++ +.+ ...+ +.+...+.++..+.....| .++.++++.+
T Consensus 269 i~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~ 348 (446)
T PRK10197 269 MDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSG 348 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444444444444444444444444432221 111 1111 1122222222222222222 3566666665
Q ss_pred hhhhhhHHHhhhhhHhhhhcc
Q psy14877 141 VLAAVPLAFILPALSYLKLES 161 (221)
Q Consensus 141 a~~~~~l~fi~P~l~yl~~~~ 161 (221)
... .+.+.++++-+++.++
T Consensus 349 ~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 349 AIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred HHH--HHHHHHHHHHHHHHHH
Confidence 554 4788888888777643
No 26
>PRK10836 lysine transporter; Provisional
Probab=96.86 E-value=0.22 Score=45.51 Aligned_cols=47 Identities=4% Similarity=-0.138 Sum_probs=40.4
Q ss_pred EEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 3 GAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYA 50 (221)
Q Consensus 3 Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~ 50 (221)
|+|.+-..+..+.+|.|||++ +.+++...++..+.++|......-..
T Consensus 216 faf~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~v~~~Yvl~~~~~~~ 262 (489)
T PRK10836 216 FSFQGTELIGIAAGESEDPAK-NIPRAVRQVFWRILLFYVFAILIISL 262 (489)
T ss_pred HHHccHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 788889999999999999985 68999999999999999988655433
No 27
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=96.74 E-value=0.33 Score=44.11 Aligned_cols=44 Identities=11% Similarity=-0.049 Sum_probs=38.9
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGI 46 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~ 46 (221)
.|+|.+-..+..+.+|.|||++ +.+++...+...+.++|....+
T Consensus 207 ~~af~G~e~~~~~a~E~knP~r-~iPrai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 207 AFSFGGTELVALTAGEAANPRK-SIPRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred HhhhccHHHHHHHHHhhcChhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999985 6899999999999999998754
No 28
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=96.74 E-value=0.087 Score=46.93 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=65.6
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc---chhh---hcCc-C--CCChHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNV---QGDL---LENY-C--WYDDLMN 72 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~---~~~i---l~~~-~--~~~~~~~ 72 (221)
.|+|.+-.......+|+|| |+.+++...+.+++.++|......-....+++. .++. ...+ . ..++...
T Consensus 198 ~~~~~G~e~~~~~~~E~k~---k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (426)
T PF13520_consen 198 FFAFSGFEAIASLAEENKN---KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAI 274 (426)
T ss_dssp GGGGTTTTHHHHGGGGSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHH
T ss_pred Hhhcccccccccccccccc---hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccccccccc
Confidence 4678888899999999877 479999999999999999999877666665532 1121 1111 0 0135555
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcc
Q psy14877 73 LARLAFSFTILLTYPIECLVTRSVLLQVLNA 103 (221)
Q Consensus 73 ~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~ 103 (221)
+..+...+..+.+..-......+.+..+-++
T Consensus 275 ~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d 305 (426)
T PF13520_consen 275 IVSIAAILSLFGSINAFIFGASRLLYAMARD 305 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccchhhcchhhcccccccc
Confidence 5566666666666666666555565555443
No 29
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=96.73 E-value=0.074 Score=47.86 Aligned_cols=45 Identities=7% Similarity=-0.056 Sum_probs=37.1
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIA 47 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~ 47 (221)
.|+|.+...+..+.+|+|||++ +.+++...+..++.++|+..-..
T Consensus 201 ~~af~G~e~~~~~aeE~k~P~r-~iprai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 201 IWFFLAVEGVAMAAEETKNPKR-DIPRGLIGAILTLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHHHHHHhcCccc-ccCHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999985 57888888888888888776443
No 30
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=96.71 E-value=0.14 Score=46.53 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=38.3
Q ss_pred EEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14877 3 GAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFT 53 (221)
Q Consensus 3 Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg 53 (221)
|+|.+-.....+.+|.||+ |+.+++...++..+.++|..+.+..+...+
T Consensus 206 ~~f~G~e~~~~~a~e~k~~--k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 206 WVFIGIEGASMLSARAEKR--SDVGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHhHhHHhhhHhhccCc--ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 5666666777778888874 479999999999999999998876655443
No 31
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=96.67 E-value=0.11 Score=47.66 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=40.0
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGY 49 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy 49 (221)
.|+|.+-..+..+.+|+|||++ +.+++...+..++.++|++..+.-.
T Consensus 245 ~~af~G~e~~~~~a~E~knP~r-~iPrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 245 IWAYGGWNYLNFVTEEVKNPYR-TLPIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred HHHHHhHHHHhhhHHHhcCchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888999999999985 6899999999999999999865543
No 32
>PRK15049 L-asparagine permease; Provisional
Probab=96.65 E-value=0.12 Score=47.65 Aligned_cols=49 Identities=8% Similarity=-0.231 Sum_probs=40.1
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYAT 51 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~ 51 (221)
.|+|.+-..+....+|.|||++ +.+++...++....++|+.........
T Consensus 230 ~faf~G~e~i~~~aeE~knP~r-~iPrAi~~~~~~i~~~yi~~~~~~~~~ 278 (499)
T PRK15049 230 VFAFASIEMVGTAAGECKDPQT-MVPKAINSVIWRIGLFYVGSVVLLVML 278 (499)
T ss_pred HHHHhhHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 4788888999999999999985 589999888888888888876654433
No 33
>PRK10249 phenylalanine transporter; Provisional
Probab=96.63 E-value=0.23 Score=45.12 Aligned_cols=45 Identities=7% Similarity=-0.141 Sum_probs=38.0
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIA 47 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~ 47 (221)
.|+|.+-..+....+|+|||++ +.+++...++....++|......
T Consensus 219 ~~af~G~e~~~~~a~E~~~P~k-~iPrai~~~~~~~~~~y~~~~~~ 263 (458)
T PRK10249 219 MFSFGGLELIGITAAEARDPEK-SIPKAVNQVVYRILLFYIGSLVV 263 (458)
T ss_pred HHHHcCHHHHHHHHHHhcCHhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999985 68999999999999999775443
No 34
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=96.59 E-value=0.19 Score=45.79 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=38.5
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYA 50 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~ 50 (221)
.|+|.+-.....+.+|+|| + |+.++....+..++.++|+........
T Consensus 209 ~~af~G~e~~~~~a~E~k~-~-r~iPrai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 209 LWVFIGIEGAVVSSGRAKN-K-SDVGKATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred HHHHHhHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677778888889999999 4 478999999999999999988765443
No 35
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=96.44 E-value=0.4 Score=43.13 Aligned_cols=50 Identities=10% Similarity=-0.006 Sum_probs=41.8
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATF 52 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~f 52 (221)
.|+|.+-..+....+|+|||++ +.+|+...+...+.++|+...+......
T Consensus 197 ~faf~G~E~~~~~a~E~knP~r-~iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 197 LWAFVGVESAAVSTGMVKNPKR-TVPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHhhHHHHHHHHHHhhCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4678888899999999999975 6899999999999999999887654333
No 36
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=96.43 E-value=0.3 Score=44.44 Aligned_cols=47 Identities=9% Similarity=-0.136 Sum_probs=37.9
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGY 49 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy 49 (221)
.|+|.+-..+....+|+|||++ +.+++...+.+...++|......-.
T Consensus 221 ~~af~G~e~~~~~a~E~knP~r-~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 221 VFAFVGIELVGTTAAETKDPEK-SLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHhcHHHHHHHHHHhcCHhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 4678888999999999999985 5888887777777888887665543
No 37
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=96.38 E-value=0.41 Score=43.60 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=36.1
Q ss_pred EEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14877 3 GAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFT 53 (221)
Q Consensus 3 Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg 53 (221)
|+|.+-..+....+|+|||++ +.+++...+..+..+++....+.-....+
T Consensus 228 fsf~G~e~~~~~a~E~knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 228 WSMTGYDGTAHMAEEIENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred HHhcCcchhhHHHHhcCChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 678888899999999999985 68888888877766654444333333333
No 38
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=96.36 E-value=0.35 Score=44.61 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=36.0
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFG 45 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g 45 (221)
.|+|.+-..+....+|+|||++ +++++...+++++.++|....
T Consensus 204 ~faf~G~E~~a~~a~E~knP~r-~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 204 IGAYMGVEASASHINELENPGR-DYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHhcHHHHHHHHHHccCCcc-cccHHHHHHHHHHHHHHHHHH
Confidence 3578888889999999999985 589999999888888887644
No 39
>PRK10238 aromatic amino acid transporter; Provisional
Probab=96.35 E-value=0.58 Score=42.44 Aligned_cols=42 Identities=12% Similarity=-0.081 Sum_probs=34.1
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLF 44 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~ 44 (221)
.|+|.+-..+....+|+|||++ +.+++...+.....++|...
T Consensus 210 ~~af~G~e~~~~~aeE~knP~r-~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 210 MFSFGGLELVGITAAEADNPEQ-SIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHhcCHHHHHHHHHhhcChhh-HHHHHHHHHHHHHHHHHHHH
Confidence 4678888889999999999985 58888887777777777654
No 40
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=96.35 E-value=0.41 Score=43.21 Aligned_cols=47 Identities=13% Similarity=-0.096 Sum_probs=38.1
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGY 49 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy 49 (221)
.|+|.+-..+..+.+|+|||++ +.+++...+.....++|+.......
T Consensus 211 ~~af~G~e~~~~~a~E~k~P~r-~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 211 MFSFMGTEIVTIAAAESSNPIK-SITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred HHHhccHHHHhHHHHhhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 4678899999999999999985 6888888888888888888654433
No 41
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=96.11 E-value=0.78 Score=41.10 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=44.0
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTG 54 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~ 54 (221)
.++|.+=..+.+..+|+|||++ +.++....+++.+.++|......-....++
T Consensus 211 ~~~f~G~e~~~~~a~E~knp~r-~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 211 FFAFTGFEAIATLAEEVKNPKR-TIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHhhcHHHHHHHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 4678888889999999999875 478899999999999999998877777765
No 42
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=95.99 E-value=0.26 Score=46.00 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=81.7
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-c--chhh---hcCcCCCChHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGN-V--QGDL---LENYCWYDDLMNLAR 75 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~-~--~~~i---l~~~~~~~~~~~~~~ 75 (221)
.|+|.+-..+....+|.|||++ +.++....++.++.++|..+.+.-...-.++ . ++.+ ..... .++...+..
T Consensus 241 ~faf~Gfd~v~~~aeE~knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g-~~~~~~ii~ 318 (557)
T TIGR00906 241 FFAFIGFDAIATTGEEVKNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVG-WGPAKYIVA 318 (557)
T ss_pred HHHHhhHHHHHHhHHhccCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcC-chHHHHHHH
Confidence 3678888999999999999985 5899999999999999999876543332221 1 1111 11111 123333334
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhccc-------CCCCchh--hhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhh
Q psy14877 76 LAFSFTILLTYPIECLVTRSVLLQVLNAY-------HSTDKQH--VGFTLAIVLITYFISITTDCLGVVLELNGVLAAVP 146 (221)
Q Consensus 76 ~~~~i~~~~s~pl~~~p~~~~~~~~l~~~-------~~~~~~~--~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~ 146 (221)
+........+.--.++...+.+..+=+.+ +..++.+ .........++.+++.. .+++.+.++.. .+..
T Consensus 319 ~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~-~~~~~l~~l~s--ig~l 395 (557)
T TIGR00906 319 VGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFL-FDLKALVDLLS--IGTL 395 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHH-cCHHHHHHHHH--HHHH
Confidence 44444444433333444444433332211 1111111 11122222233333433 35666666543 3346
Q ss_pred HHHhhhhhHhhhhc
Q psy14877 147 LAFILPALSYLKLE 160 (221)
Q Consensus 147 l~fi~P~l~yl~~~ 160 (221)
+.|.++++..+.++
T Consensus 396 l~y~lv~~~~l~lR 409 (557)
T TIGR00906 396 LAYSLVAACVLILR 409 (557)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888877665554
No 43
>PRK10580 proY putative proline-specific permease; Provisional
Probab=95.85 E-value=1.1 Score=40.61 Aligned_cols=45 Identities=4% Similarity=-0.187 Sum_probs=36.4
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIA 47 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~ 47 (221)
.|+|.+-..+....+|+|||++ +.+++...+.....++|......
T Consensus 209 ~fsf~G~e~~~~~a~E~knP~k-~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 209 MFAYGGIEIIGITAGEAKDPEK-SIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHhCHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999995 57888877777778888777544
No 44
>TIGR00930 2a30 K-Cl cotransporter.
Probab=95.75 E-value=0.78 Score=45.67 Aligned_cols=43 Identities=12% Similarity=-0.045 Sum_probs=36.7
Q ss_pred EeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 4 AFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIA 47 (221)
Q Consensus 4 af~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~ 47 (221)
||.+-.....+..|+|||++ ..++....++.+++++|+++.+.
T Consensus 292 A~tGi~agan~sgElKnP~r-~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 292 SVTGILAGANISGDLKDPQK-AIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHhccChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677779999999985 58999999999999999999753
No 45
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=95.63 E-value=1.2 Score=40.89 Aligned_cols=46 Identities=17% Similarity=-0.102 Sum_probs=38.9
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAG 48 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~g 48 (221)
.|+|.+-..+....+|+|||++ +.+|+...+...+.++|....++-
T Consensus 221 ~~~f~G~e~~~~~a~E~~~p~~-~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 221 IFAYGGIEAVGGLVDKTENPEK-NFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHHHhHHHHHHHHHhccCCCc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888899999999999985 589999999999999999865433
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=95.41 E-value=1.5 Score=39.97 Aligned_cols=51 Identities=10% Similarity=-0.012 Sum_probs=38.5
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFT 53 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg 53 (221)
.|+|.+-..+..+.+|+|||++ +.+|....+..+..++|.++-+......+
T Consensus 223 ~~~f~G~e~~~~~aeE~knP~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 223 AYVMVGFGSAGELSEETKNPRR-VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHhcCcchHHHHHHHhcCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3677888889999999999985 68999988888887766655544444333
No 47
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=94.61 E-value=1 Score=39.29 Aligned_cols=149 Identities=14% Similarity=0.160 Sum_probs=88.4
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchh-------hhcCcCCC---ChHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGD-------LLENYCWY---DDLM 71 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~-------il~~~~~~---~~~~ 71 (221)
.++|.+...+.....++|||+ +.+|....+..++.++|...-+.....+|.+..++ ..+...-. +..-
T Consensus 189 ~~~f~g~~i~~~~~~~~~~~~--~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e 266 (359)
T TIGR00912 189 TFAFGEIEIFFLLFPLLSKKK--KIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFE 266 (359)
T ss_pred hhhhHHHHHHHHHHHHhCChh--hhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHH
Confidence 366776666777778888765 68899999999999999998888888887543211 11111100 1112
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhccc-hHHHHHHhh---hhhhhhH
Q psy14877 72 NLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDC-LGVVLELNG---VLAAVPL 147 (221)
Q Consensus 72 ~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~ip~-~~~~~~l~G---a~~~~~l 147 (221)
.+.-.........+.-+..+.....+.++++.++ .|..+...+. +.+.++. .|+ ... .+... ...+...
T Consensus 267 ~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~ 339 (359)
T TIGR00912 267 LIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRK---YSILILPVLM--VIFSISF-FPDSSNQ-LFDYLEFLPIIAIVF 339 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---cchhHHHHHH--HHHHHHH-ccchHHH-HHHHHHHHHHHHHHH
Confidence 2233444566677777788889999998876532 2223333222 2333333 444 332 32322 2344567
Q ss_pred HHhhhhhHhhhh
Q psy14877 148 AFILPALSYLKL 159 (221)
Q Consensus 148 ~fi~P~l~yl~~ 159 (221)
.+++|-++.+-.
T Consensus 340 ~~~~P~ll~~i~ 351 (359)
T TIGR00912 340 FLLLPLILFIIV 351 (359)
T ss_pred HHHHHHHHHHHH
Confidence 778999877543
No 48
>KOG1286|consensus
Probab=91.65 E-value=3.1 Score=38.98 Aligned_cols=155 Identities=13% Similarity=0.073 Sum_probs=90.7
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHH--hccc-CcchhhhcC--c------CCCChH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYA--TFTG-NVQGDLLEN--Y------CWYDDL 70 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~--~fg~-~~~~~il~~--~------~~~~~~ 70 (221)
.|+|.+--.+-...+|-|||++ ..+++...++..++++|....+.--+ .|.| +..++.... | ..-..+
T Consensus 242 ~fsf~G~e~va~~a~E~kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~ 320 (554)
T KOG1286|consen 242 FFSFIGFELVATTAEEAKNPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYL 320 (554)
T ss_pred HHHHhhHHHHHHHHHhccCCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCcccc
Confidence 3778888889999999999984 68999999999999999999865333 2222 122222110 0 001122
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccc-------C-CCCchhhhHHHHHHHHHHHHHHhccc-----hHHHHH
Q psy14877 71 MNLARLAFSFTILLTYPIECLVTRSVLLQVLNAY-------H-STDKQHVGFTLAIVLITYFISITTDC-----LGVVLE 137 (221)
Q Consensus 71 ~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~-------~-~~~~~~~~~~~~i~~~~~~lA~~ip~-----~~~~~~ 137 (221)
..+..+...+.+..+---.+++.-+.+-.+-..+ + .++.+-+...+...+...+.++.... ++.+++
T Consensus 321 ~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~ 400 (554)
T KOG1286|consen 321 PHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVN 400 (554)
T ss_pred chhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 2466666677776666667778777777764433 1 12222222233333333333333322 477877
Q ss_pred HhhhhhhhhHHHhhhhhHhhhh
Q psy14877 138 LNGVLAAVPLAFILPALSYLKL 159 (221)
Q Consensus 138 l~Ga~~~~~l~fi~P~l~yl~~ 159 (221)
+.|--. ++++.+=++.|++.
T Consensus 401 ~~si~t--l~~w~~i~~~~i~~ 420 (554)
T KOG1286|consen 401 LSSIGT--LFAWTLVALSHLRF 420 (554)
T ss_pred HHhHHH--HHHHHHHHHHHeee
Confidence 776544 45555555555544
No 49
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=91.18 E-value=11 Score=33.99 Aligned_cols=83 Identities=16% Similarity=0.050 Sum_probs=56.1
Q ss_pred CCCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHhhhhhHhhhhccC-----CcccchhhhHHHHHHHHH
Q psy14877 106 STDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESG-----SIFSKQKLPALGLALFGV 180 (221)
Q Consensus 106 ~~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~fi~P~l~yl~~~~~-----~~~~~~~i~~~~i~~~Gv 180 (221)
.+|.||...|......+.++.+..-+.+.++.+.+...+..+-+..++++++-.+|+ +.++|.++..|.+.++=+
T Consensus 322 ~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~~i~ 401 (416)
T COG1914 322 PLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVILIV 401 (416)
T ss_pred chHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHHHHH
Confidence 357778888877676766665555599999999999998888888888777765553 224566666666555544
Q ss_pred HHHHHHHH
Q psy14877 181 MVAFVGLI 188 (221)
Q Consensus 181 ~~~v~g~~ 188 (221)
...+.-++
T Consensus 402 ~L~i~li~ 409 (416)
T COG1914 402 ALNIILLV 409 (416)
T ss_pred HHHHHHHH
Confidence 44444433
No 50
>PRK00701 manganese transport protein MntH; Reviewed
Probab=88.66 E-value=19 Score=32.78 Aligned_cols=81 Identities=16% Similarity=0.044 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhh----hhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhc--cchHHHHHHhhhhhh
Q psy14877 71 MNLARLAFSFTILLT----YPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITT--DCLGVVLELNGVLAA 144 (221)
Q Consensus 71 ~~~~~~~~~i~~~~s----~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~i--p~~~~~~~l~Ga~~~ 144 (221)
-..++..+.+.++.+ .+..........|..+..+...+.||...+...++...++.... .+...++.+..
T Consensus 305 G~~a~~lFaiGL~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aq---- 380 (439)
T PRK00701 305 GAAAATLFGIALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGELDPTRLLVLSQ---- 380 (439)
T ss_pred hHHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH----
Confidence 344455554444322 22222233334455544432245566666666555555555444 33444444333
Q ss_pred hhHHHhhhhhH
Q psy14877 145 VPLAFILPALS 155 (221)
Q Consensus 145 ~~l~fi~P~l~ 155 (221)
....+.+|...
T Consensus 381 v~~~i~LP~~~ 391 (439)
T PRK00701 381 VVLSFGLPFAL 391 (439)
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=84.30 E-value=0.84 Score=41.51 Aligned_cols=52 Identities=19% Similarity=0.050 Sum_probs=43.4
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTG 54 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~ 54 (221)
.++|.+-..+...-+|.|||++ ..++....++....++|.......-...+.
T Consensus 210 ~~af~G~e~~a~~a~E~k~P~k-~IPra~~~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 210 FFAFVGFESIAILAEEAKNPRK-TIPRATLLSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred hcccccccccccccccCCCchh-hhhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence 4678888888889999999985 689999999999999999888765555544
No 52
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=84.19 E-value=33 Score=31.28 Aligned_cols=138 Identities=9% Similarity=-0.018 Sum_probs=82.0
Q ss_pred HHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-chhhhcCcCCCChHHHHHHHHHHHHHHhhhhhhhhH
Q psy14877 14 LYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNV-QGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLV 92 (221)
Q Consensus 14 i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 92 (221)
..+-+|+|+.++.-............+-.++|...-.+-|+.- ..++...+. .+...+-+...+..+.+.-..+|+
T Consensus 216 ysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G---~~g~~~~lil~l~~~ttN~~nlYs 292 (442)
T COG1457 216 YSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG---GFGLPAILILVLGTVTTNANNLYS 292 (442)
T ss_pred hhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc---cHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4445566653333344445556666666777777777776655 444444443 277788888889999999999999
Q ss_pred HHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHh----ccchHHHHHHhhhhhhhhHHHhhhhhHhhh
Q psy14877 93 TRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISIT----TDCLGVVLELNGVLAAVPLAFILPALSYLK 158 (221)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~----ip~~~~~~~l~Ga~~~~~l~fi~P~l~yl~ 158 (221)
.--.+.....+ .++..+.+..... ..+++|+. ..+++.++.++|+...+.....+=-.+..|
T Consensus 293 a~ls~~~i~~~--l~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~iad~~~~r 358 (442)
T COG1457 293 AGLSFANIIPK--LSKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMIADYFIVR 358 (442)
T ss_pred HHHHHHHhhhh--hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98888887654 2233333322221 33444443 456777777777776554444433333333
No 53
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=79.43 E-value=27 Score=28.10 Aligned_cols=64 Identities=17% Similarity=0.122 Sum_probs=48.9
Q ss_pred HHHHHHhhhhhhhhHHHhhhhhHhhhhccCCc----------ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy14877 133 GVVLELNGVLAAVPLAFILPALSYLKLESGSI----------FSKQKLPALGLALFGVMVAFVGLIQILYAIQS 196 (221)
Q Consensus 133 ~~~~~l~Ga~~~~~l~fi~P~l~yl~~~~~~~----------~~~~~i~~~~i~~~Gv~~~v~g~~~~i~~~~~ 196 (221)
...+-..|++.+.-+..++|+...+.+.++.- .|.+-....+.-.+|++..+++...+...+.+
T Consensus 44 s~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 44 SCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred chhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33556778888888999999999999876521 23334566777788999999998888888876
No 54
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=75.85 E-value=59 Score=29.31 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=67.3
Q ss_pred hHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHh----cccCcch--hhhcCcCCCChHHHHHH------HH
Q psy14877 10 NVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYAT----FTGNVQG--DLLENYCWYDDLMNLAR------LA 77 (221)
Q Consensus 10 ~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~----fg~~~~~--~il~~~~~~~~~~~~~~------~~ 77 (221)
+.+...+-+|+++.. .+....++.........+|..+-.. +|+...+ +++..+... ......+ .+
T Consensus 226 ~~~DysRy~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~-~~~~~~~~~~f~~~~ 302 (442)
T TIGR00800 226 NAPDFTRFGKSKKTA--IWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGL-TYAVGARAVFGFGFC 302 (442)
T ss_pred CchhhhhhcCCccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhccc-chhhhHHHHHHHHHH
Confidence 455666777776532 2335556666666677777666655 7765322 333333321 1111111 22
Q ss_pred HHHHHH-hhhhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHH--HHHhccchHHHHHHhhhhhhhhHHHhh
Q psy14877 78 FSFTIL-LTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYF--ISITTDCLGVVLELNGVLAAVPLAFIL 151 (221)
Q Consensus 78 ~~i~~~-~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~--lA~~ip~~~~~~~l~Ga~~~~~l~fi~ 151 (221)
..+..+ ...-...++....+..++.+. .+..|..++...+.+++.. +..+.+.+.+++++.|...++.....+
T Consensus 303 ~vl~~~~t~~~~N~ys~~l~l~~l~~~~-~~~~r~~~i~~ii~~~~~~~~~~~~~~~~~~FL~~lg~~~~P~~gI~l 378 (442)
T TIGR00800 303 FVVAQLSTNISANSYSAGLDIAALLPKY-IKIKRGSLICAIIALLICPWNLYNSSSKFTTFLSSIGGFLSPIAGVMI 378 (442)
T ss_pred HHHHHHHHHHHhhccchHHHHHHhCcCc-cccchHHHHHHHHHHHhccHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 345556778877777776432 1222211222111111111 112233566688888887776555433
No 55
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=75.84 E-value=18 Score=33.06 Aligned_cols=156 Identities=11% Similarity=0.046 Sum_probs=78.9
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHH-----HHHHHHHHHhcccCcchh--hhcCcCCCChHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVS-----LLFGIAGYATFTGNVQGD--LLENYCWYDDLMNLA 74 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y-----~~~g~~gy~~fg~~~~~~--il~~~~~~~~~~~~~ 74 (221)
+|||.+--.+=-...|-|||++ ..+|+.+....=..++| +++.+..+-.++++..+- ++..+.- .....+.
T Consensus 213 ~Faf~GiElvGitA~Et~dP~k-~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi-~~Aa~i~ 290 (462)
T COG1113 213 MFAFGGIELVGITAAEAKDPEK-AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGI-PFAAGIM 290 (462)
T ss_pred HHHHhhHHHHHHHHHhhcChhh-HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCC-cccccce
Confidence 4788888888888999999985 46666555444444444 444444444444433221 1122210 0111111
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHhcccC-------C----CCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhh
Q psy14877 75 RLAFSFTILLTYPIECLVTRSVLLQVLNAYH-------S----TDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLA 143 (221)
Q Consensus 75 ~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~-------~----~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~ 143 (221)
+.........+.--.+|...+++-.+-.+++ . -...-+..+....+++.++....| +.+++++=+.+
T Consensus 291 N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s 368 (462)
T COG1113 291 NFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSS 368 (462)
T ss_pred eEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHH
Confidence 1111111222222233333344333322210 0 113345667777777888888888 77777777666
Q ss_pred hhhH--HHhhhhhHhhhhcc
Q psy14877 144 AVPL--AFILPALSYLKLES 161 (221)
Q Consensus 144 ~~~l--~fi~P~l~yl~~~~ 161 (221)
+... ...+=.+.|+|.+|
T Consensus 369 ~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 369 GLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 5433 33344455677654
No 56
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=67.22 E-value=67 Score=26.10 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=31.6
Q ss_pred CCCChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccC
Q psy14877 65 CWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYH 105 (221)
Q Consensus 65 ~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~ 105 (221)
...|.+..-.++.+.+....+.|...+-.-.-+..-+.++|
T Consensus 52 ~~~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~~E 92 (215)
T TIGR00945 52 SPTEPFFTYIKLSLIVGIILSSPVILYQIWAFILPGLYEHE 92 (215)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 34578888999999999999999998876666665555543
No 57
>PRK11375 allantoin permease; Provisional
Probab=63.29 E-value=1.2e+02 Score=27.92 Aligned_cols=98 Identities=11% Similarity=0.100 Sum_probs=50.1
Q ss_pred HHhcccCcch--hhhcCcCCCChHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHH
Q psy14877 49 YATFTGNVQG--DLLENYCWYDDLMNLARLAFSFTILLTYP-IECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFI 125 (221)
Q Consensus 49 y~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s~p-l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l 125 (221)
...+|+...+ +++.... +......+-+.+.+..+.+.- ...++.-..+..++.+. .+ .+|-..-.. ++..++
T Consensus 287 ~~~~g~~~~dp~~i~~~~~-~~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~-i~-~~~~~~i~~--iig~~~ 361 (484)
T PRK11375 287 SIHYGADTWNVLDIVQRWD-SLFASFFAVLVILMTTISTNATGNIIPAGYQIAALAPTK-LT-YKNGVLIAS--IISLLI 361 (484)
T ss_pred HHHhCCCcCCHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcCc-cc-hhhHHHHHH--HHHHHh
Confidence 3456554322 3333332 123344455556666666654 57888888888876542 22 222111111 112222
Q ss_pred HH--hc---cchHHHHHHhhhhhhhhHHHhh
Q psy14877 126 SI--TT---DCLGVVLELNGVLAAVPLAFIL 151 (221)
Q Consensus 126 A~--~i---p~~~~~~~l~Ga~~~~~l~fi~ 151 (221)
+. .. ..+..++++.|++.++....++
T Consensus 362 ~pw~~~~~~~~f~~FL~~lg~~l~Pi~gImi 392 (484)
T PRK11375 362 CPWKLMENQDSIYLFLDIIGGMLGPVIGVMM 392 (484)
T ss_pred ccHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 22 3378888888888877665444
No 58
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=58.52 E-value=1.3e+02 Score=26.60 Aligned_cols=126 Identities=13% Similarity=-0.034 Sum_probs=65.7
Q ss_pred HHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHHHHHHHhhhhhhhh
Q psy14877 12 FLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECL 91 (221)
Q Consensus 12 ~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~ 91 (221)
+...+-.|+|+ +.......+..+...+-..+|...-.+.++. |..+-+.+ ......+-+...+..+.+.....+
T Consensus 193 ~DysRy~k~~~--~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~---d~~~~~~~-~g~~~~~~~~~~l~~~~~n~~N~y 266 (386)
T TIGR02358 193 ADYTRFARNPR--HVFLGTVLGYFIGSCWMYFLGLAVTLATGQT---DIISILAG-AGLGIPALLIILLSTVTTTFMDIY 266 (386)
T ss_pred cchhhhcCCCc--ceehHHHHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHh-ccHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444444443 3334455566667777777777666666543 22222221 112234445556666777778888
Q ss_pred HHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHh--ccchHHHHHHhhhhhhhhHH
Q psy14877 92 VTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISIT--TDCLGVVLELNGVLAAVPLA 148 (221)
Q Consensus 92 p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~--ip~~~~~~~l~Ga~~~~~l~ 148 (221)
+.-..+..++.+- +++++.++ ...+..+++.. ...+..++++.|...++...
T Consensus 267 s~~l~l~~l~~~~--~~~~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~g 320 (386)
T TIGR02358 267 SAAISTGNLLPRL--KVKHLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFAPLYA 320 (386)
T ss_pred HHHHHHHHHHHhh--cchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877331 22222221 12222222222 35566777777766665444
No 59
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=58.50 E-value=97 Score=25.03 Aligned_cols=96 Identities=10% Similarity=0.161 Sum_probs=56.2
Q ss_pred CCCChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhH-HHHHHHHHHHHH-----------------
Q psy14877 65 CWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGF-TLAIVLITYFIS----------------- 126 (221)
Q Consensus 65 ~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~-~~~i~~~~~~lA----------------- 126 (221)
+..+.+....++...+++..+.|...+-.-.-+..-+.++|.+..++... ...+..+....+
T Consensus 56 ~~~e~f~~~lk~s~~~~~~~~~P~~~yq~w~Fi~PgL~~~Er~~~~~~~~~~~~lf~~g~~f~y~~ilP~~~~fl~~f~~ 135 (215)
T PF00902_consen 56 SPTEAFFTYLKLSFFLGLIISLPYILYQIWAFIAPGLYKHERRFFKKFVLISFILFLLGVAFAYFVILPLILKFLLSFSP 135 (215)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33578889999999999999999998877777776665543322222221 121222211112
Q ss_pred ----HhccchHHHHHHhhhh-hhhhHHHhhhhhHhhhhc
Q psy14877 127 ----ITTDCLGVVLELNGVL-AAVPLAFILPALSYLKLE 160 (221)
Q Consensus 127 ----~~ip~~~~~~~l~Ga~-~~~~l~fi~P~l~yl~~~ 160 (221)
...+++++.++++--+ ....+.|-+|-++..-.+
T Consensus 136 ~~~~~~~~~i~~y~~f~~~~~~~~gl~FqlPli~~~L~~ 174 (215)
T PF00902_consen 136 TSGIQPEPSISSYLNFVIQFLLIFGLIFQLPLIMFFLVR 174 (215)
T ss_pred hcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1224444555544433 245567788998886543
No 60
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=57.41 E-value=45 Score=27.30 Aligned_cols=81 Identities=14% Similarity=0.068 Sum_probs=51.3
Q ss_pred HHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHHHHHHHhhhhhhhh
Q psy14877 12 FLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECL 91 (221)
Q Consensus 12 ~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~ 91 (221)
.-+++..+.++ |+..|.+-..+-....+-.++|+..-..+-++.++.+-+-++-.+|.-...-.++.++.+.++...++
T Consensus 43 iLvyr~~~~~~-k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~ 121 (214)
T cd08764 43 ILVYRVFRNTR-KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLF 121 (214)
T ss_pred HHHhccCcccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455444433 34456666666677777777776554444444433443334445788888888999999999887777
Q ss_pred HH
Q psy14877 92 VT 93 (221)
Q Consensus 92 p~ 93 (221)
|.
T Consensus 122 P~ 123 (214)
T cd08764 122 PG 123 (214)
T ss_pred cc
Confidence 74
No 61
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=54.55 E-value=1.4e+02 Score=27.76 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcccCc--chhhhcCcCCCChHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHhcccCCCCchhhhH-
Q psy14877 39 VVSLLFGIAGYATFTGNV--QGDLLENYCWYDDLMNLARLAFSFTILLTYP-IECLVTRSVLLQVLNAYHSTDKQHVGF- 114 (221)
Q Consensus 39 ~~y~~~g~~gy~~fg~~~--~~~il~~~~~~~~~~~~~~~~~~i~~~~s~p-l~~~p~~~~~~~~l~~~~~~~~~~~~~- 114 (221)
++=.+.+..++..||+.. ..|+++++++.....-.+-+.+.+..+.+.- -...+.-.-+..++++. .. .||=..
T Consensus 290 ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp~~D~s~l~Pk~-in-~krg~li 367 (497)
T COG1953 290 LIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSPGYDLSALFPKY-IN-IKRGGLI 367 (497)
T ss_pred HHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCChHHHHHHhcccc-cc-hhhhHHH
Confidence 333444455788899985 4588888874322221333333333322222 22333334444444332 22 232221
Q ss_pred --HHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHhh
Q psy14877 115 --TLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFIL 151 (221)
Q Consensus 115 --~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~fi~ 151 (221)
.+.++++..-+=-.-..+..+++..|++.++....++
T Consensus 368 aA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmi 406 (497)
T COG1953 368 AAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMI 406 (497)
T ss_pred HHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222245677777777888887666444
No 62
>KOG4812|consensus
Probab=54.52 E-value=37 Score=28.26 Aligned_cols=73 Identities=15% Similarity=0.353 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHh---------hhhhhhhHHHhhhhhHhhhhcc--CCc---ccchhhhHHHHHHHHH
Q psy14877 115 TLAIVLITYFISITTDCLGVVLELN---------GVLAAVPLAFILPALSYLKLES--GSI---FSKQKLPALGLALFGV 180 (221)
Q Consensus 115 ~~~i~~~~~~lA~~ip~~~~~~~l~---------Ga~~~~~l~fi~P~l~yl~~~~--~~~---~~~~~i~~~~i~~~Gv 180 (221)
+-++.+..+++|..++-+|-++..+ ||.+|.-+.++= |..+.+ ++. ...++|+.|+++++|.
T Consensus 159 nd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ 234 (262)
T KOG4812|consen 159 NDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGL 234 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHH
Confidence 3445556666777777776665554 777776666554 333322 111 1235788899999999
Q ss_pred HHHHHHHHHHH
Q psy14877 181 MVAFVGLIQIL 191 (221)
Q Consensus 181 ~~~v~g~~~~i 191 (221)
++..-+++.=+
T Consensus 235 ll~lr~~i~Yi 245 (262)
T KOG4812|consen 235 LLFLRGFINYI 245 (262)
T ss_pred HHHHHHHHhHH
Confidence 99888877544
No 63
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=53.07 E-value=1.4e+02 Score=25.12 Aligned_cols=93 Identities=13% Similarity=0.132 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhH-HHHHHHHHHHHH-------------------
Q psy14877 67 YDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGF-TLAIVLITYFIS------------------- 126 (221)
Q Consensus 67 ~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~-~~~i~~~~~~lA------------------- 126 (221)
.+++..-.++.+.+.+..+.|+.++-.-.-+..-+.++|.++.++.+. ...+.......+
T Consensus 65 ~e~f~~~lk~sl~~g~~la~P~ilyqiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~y~~vlP~~~~Fl~~f~~~~ 144 (258)
T PRK10921 65 ASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLAKTAPEG 144 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 467888899999999999999988866655555554433222222111 111111111001
Q ss_pred -HhccchHHHHHHhhhh-hhhhHHHhhhhhHhhhh
Q psy14877 127 -ITTDCLGVVLELNGVL-AAVPLAFILPALSYLKL 159 (221)
Q Consensus 127 -~~ip~~~~~~~l~Ga~-~~~~l~fi~P~l~yl~~ 159 (221)
...+++++.++++-.+ .+.-++|-+|-++..-.
T Consensus 145 ~~~~~~i~~Y~~fv~~~~l~fGl~FelPli~~~L~ 179 (258)
T PRK10921 145 VQVSTDIASYLSFVMALFMAFGVSFEVPVAIVLLC 179 (258)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1224556666654433 35668888999888654
No 64
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=51.38 E-value=1.7e+02 Score=25.80 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=22.2
Q ss_pred HHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14877 14 LYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYAT 51 (221)
Q Consensus 14 i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~ 51 (221)
.++-+.-++.|..++....+......++....+.|..+
T Consensus 223 ~qR~~a~ks~~~~r~~~~~~~~~~~~~~~~~~l~G~~a 260 (407)
T TIGR00813 223 VQRCLAAKSAKHAKKGCLISGVLKLLPMFGAVLPGLIA 260 (407)
T ss_pred hhHHHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666667766666555555555554444443
No 65
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=51.05 E-value=34 Score=26.44 Aligned_cols=65 Identities=11% Similarity=-0.017 Sum_probs=41.3
Q ss_pred HHhhhhhhhhHHHhhhhhHhhh-hccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy14877 137 ELNGVLAAVPLAFILPALSYLK-LESGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQSGSVSK 201 (221)
Q Consensus 137 ~l~Ga~~~~~l~fi~P~l~yl~-~~~~~~~~~~~i~~~~i~~~Gv~~~v~g~~~~i~~~~~~~~~~ 201 (221)
+..|+..+...+|..|-+.+.. ....+.....+.-..+-+++|+..+++++..+-....+.+.+.
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y~kk~~~ 98 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQYNKKLNS 98 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777788899999888753 2111111111233456778899999999988877776644433
No 66
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=50.47 E-value=1.5e+02 Score=24.77 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=30.4
Q ss_pred CCChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccc
Q psy14877 66 WYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAY 104 (221)
Q Consensus 66 ~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~ 104 (221)
..+.+..-.++.+.+.+..+.|...+-.-.-+..-+.++
T Consensus 74 ~~E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi~PgLy~~ 112 (249)
T CHL00182 74 PGEYFFSSIKISFYTGLLISSPFIIYQIILFILPGLTKK 112 (249)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 356888889999999999999998886666665555544
No 67
>KOG2082|consensus
Probab=49.58 E-value=2.8e+02 Score=27.58 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=57.9
Q ss_pred HHhhccchHhHHHHHHHHHHHHHHHHHHHHH-HHHH--------hcccCcchhhh-cCcCCCChHH-HHH----HHHHHH
Q psy14877 16 ESIEGASQFVWDKLTHISVAVAFVVSLLFGI-AGYA--------TFTGNVQGDLL-ENYCWYDDLM-NLA----RLAFSF 80 (221)
Q Consensus 16 ~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~-~gy~--------~fg~~~~~~il-~~~~~~~~~~-~~~----~~~~~i 80 (221)
.++||++++ .+.-...|.+....+|+.-.+ +|-. -||+++.++.. .++...+++. .+. .....+
T Consensus 434 GDLkDaQkS-IPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~IGsFlST~GAgL 512 (1075)
T KOG2082|consen 434 GDLKDAQKS-IPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIVIGSFLSTCGAGL 512 (1075)
T ss_pred ccccchhhc-CchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceeeehhHHHHHhHHHH
Confidence 467888753 444444555666666655432 2222 24555655554 2233323333 233 233456
Q ss_pred HHHhhhhh-hhhHHHHHHHHHhcccCCC-----CchhhhHHHHHHHHHHHHHHhccchHHHHHHhh
Q psy14877 81 TILLTYPI-ECLVTRSVLLQVLNAYHST-----DKQHVGFTLAIVLITYFISITTDCLGVVLELNG 140 (221)
Q Consensus 81 ~~~~s~pl-~~~p~~~~~~~~l~~~~~~-----~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~G 140 (221)
..+++-|= .---+||.+..++.+-.+. ..+-+++++++ +-+++.+-+++.+-.++.
T Consensus 513 QsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aLlLT~~I----ce~gILigslD~iApils 574 (1075)
T KOG2082|consen 513 QSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWALLLTAII----CECGILIGSLDLIAPILS 574 (1075)
T ss_pred hhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHHHHHHHHH----HHhhheeechhHHHHHHH
Confidence 66777773 3334666666665432111 11123333333 344556666666654443
No 68
>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.
Probab=48.39 E-value=45 Score=25.18 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCC-C---CCCCCCCcCCccccccCC
Q psy14877 170 LPALGLALFGVMVAFVGLIQILYAIQSGS-V---SKCMHGLAMPYCNKTQLN 217 (221)
Q Consensus 170 i~~~~i~~~Gv~~~v~g~~~~i~~~~~~~-~---~~~~~~~~~~~c~~~~~~ 217 (221)
+..+.+.+.+++......|...+++-.+. + ..||. ++..+|++-.++
T Consensus 3 ~~~~~~~~l~~iGl~~S~yl~~~~~~~~~~~~~~~~C~~-~~~~sC~~Vl~S 53 (142)
T smart00756 3 WTRWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDI-NPVVSCGKVLSS 53 (142)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcCCC-CCCCCHHHHhcC
Confidence 33455666666667777777776663322 2 56764 346789887665
No 69
>KOG1289|consensus
Probab=48.30 E-value=2.4e+02 Score=26.54 Aligned_cols=51 Identities=16% Similarity=0.075 Sum_probs=29.6
Q ss_pred EEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy14877 3 GAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTG 54 (221)
Q Consensus 3 Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~ 54 (221)
..+.|-.....+.+|-||+++ +-++....+..+..++=..+-+.-.+.-+|
T Consensus 263 wt~sGyDa~~H~aEE~~nAsk-~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 263 WTMSGYDAAAHMAEETKNASK-AAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred eEEeccCchHHHHHHhcchhh-hccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345555667788999999985 455655555555555443333333334443
No 70
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=48.05 E-value=65 Score=19.94 Aligned_cols=40 Identities=8% Similarity=-0.100 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-cCCcccccc
Q psy14877 176 ALFGVMVAFVGLIQILYAIQSGSVSKCMHGL-AMPYCNKTQ 215 (221)
Q Consensus 176 ~~~Gv~~~v~g~~~~i~~~~~~~~~~~~~~~-~~~~c~~~~ 215 (221)
++++++....-+..++-.....+..+|..+. +.+.+++++
T Consensus 5 ~iV~i~iv~~lLg~~I~~~~K~ygYkht~d~~e~~~~~~~~ 45 (50)
T PF12606_consen 5 LIVSIFIVMGLLGLSICTTLKAYGYKHTVDPLEDEPEEKKE 45 (50)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCchhhcc
Confidence 3444444444555566677778888887776 555555443
No 71
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=44.98 E-value=1.9e+02 Score=24.52 Aligned_cols=97 Identities=10% Similarity=0.089 Sum_probs=59.8
Q ss_pred echhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchh----h---hcCcCCC---ChHHHHHH
Q psy14877 6 MCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGD----L---LENYCWY---DDLMNLAR 75 (221)
Q Consensus 6 ~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~----i---l~~~~~~---~~~~~~~~ 75 (221)
.+-....-+...+++|+ +..|....+...+.+++...-+.....||.+..++ . .+..+-. +..-.+.-
T Consensus 189 ~~~~~~l~~~p~~~~~~--~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i 266 (320)
T PF03845_consen 189 GGIEILLFLFPFVKDKK--KLKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFI 266 (320)
T ss_pred HHHHHHHHHHHHcCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33344455667777775 66788888888888888888777778887542111 1 1111000 11222223
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhccc
Q psy14877 76 LAFSFTILLTYPIECLVTRSVLLQVLNAY 104 (221)
Q Consensus 76 ~~~~i~~~~s~pl~~~p~~~~~~~~l~~~ 104 (221)
.........+.-+..+...+.+.++++.+
T Consensus 267 ~~w~~~~~~~~~~~~~~~~~~~~~~f~~~ 295 (320)
T PF03845_consen 267 LIWIIGIFIKISLYLYAASEGLSQLFKLK 295 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44456666777788889999999988654
No 72
>KOG1288|consensus
Probab=44.73 E-value=3.2e+02 Score=26.89 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=27.8
Q ss_pred HHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 14 LYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYA 50 (221)
Q Consensus 14 i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~ 50 (221)
+-.|+|+|+++ .++-...+....++.|+++.++--.
T Consensus 316 MSgELk~PSkS-IP~GTl~ava~Tf~~Yvl~~flm~~ 351 (945)
T KOG1288|consen 316 MSGELKAPSKS-IPKGTLSAVAFTFFVYVLVIFLMGC 351 (945)
T ss_pred cCccccCcccc-CCccchHHHHHHHHHHHHHHHHhcc
Confidence 45689999963 6777778889999999988775433
No 73
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=43.96 E-value=2.4e+02 Score=25.18 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhccchHHHHHHhhhhhhhhHHHhhhhhHhh
Q psy14877 118 IVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYL 157 (221)
Q Consensus 118 i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~fi~P~l~yl 157 (221)
..+.+.+++.. .++.+++ .+.+.+.++.|...-+
T Consensus 312 ~~l~s~~ia~~--Gl~~Ii~----~~~PvL~~~YP~~i~l 345 (378)
T TIGR00796 312 FTLFSFIVANL--GLTQIIS----ISIPVLMIIYPLAIVL 345 (378)
T ss_pred HHHHHHHHHHh--CHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34445555543 6666666 4678888888987754
No 74
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=36.15 E-value=1.2e+02 Score=19.58 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=22.1
Q ss_pred HHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14877 14 LYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATF 52 (221)
Q Consensus 14 i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~f 52 (221)
+.+--++|+++-|.+++.. +.+-.+++|+.||...
T Consensus 16 ~lk~~~KPd~~Ef~~iak~----t~iG~~i~G~IGf~Ik 50 (61)
T TIGR00327 16 VLAVCKKPDLEEYLKVAKV----TGIGIIIVGIIGYIIK 50 (61)
T ss_pred HHHHhcCCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3445568888778775544 3344566777777643
No 75
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=34.35 E-value=80 Score=24.08 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=49.2
Q ss_pred HHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHHHHHHHhhhhhhhhHH
Q psy14877 14 LYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLVT 93 (221)
Q Consensus 14 i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 93 (221)
+++..+.+ +|.++.+-..+-....+-.++|+..-..+-|+. .+-+-++-.+|+-.+.-.++.++.+.++....+|.
T Consensus 29 ~~r~~~~~--k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 29 AYKTVPGS--REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred Hhhccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34443333 355667777777777888888885544444433 22222333568888888888888888887777776
No 76
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=34.02 E-value=1.9e+02 Score=23.69 Aligned_cols=32 Identities=28% Similarity=0.265 Sum_probs=25.9
Q ss_pred HHHHhccchHHHHHHhhhhhhhhHHHhhhhhH
Q psy14877 124 FISITTDCLGVVLELNGVLAAVPLAFILPALS 155 (221)
Q Consensus 124 ~lA~~ip~~~~~~~l~Ga~~~~~l~fi~P~l~ 155 (221)
...++-|..+.+.+++|++.++.++|.+==.+
T Consensus 75 ~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~ 106 (223)
T COG0398 75 GGLLFGPFLGFLYSLIGATAGSTLAFLLARYL 106 (223)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999998764433
No 77
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=33.57 E-value=1.3e+02 Score=19.33 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=20.9
Q ss_pred HHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14877 14 LYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYAT 51 (221)
Q Consensus 14 i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~ 51 (221)
+.+--++|+++-|.+++.. +.+-.+++|+.||..
T Consensus 20 vl~~~~KPd~~Ef~~ia~~----~~iG~~i~G~iGf~I 53 (61)
T PRK09400 20 VLKVARKPTREEFLLVAKV----TGLGILLIGLIGFII 53 (61)
T ss_pred HHHHhcCCCHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444568887777775544 334456677777764
No 78
>PTZ00478 Sec superfamily; Provisional
Probab=33.12 E-value=1.4e+02 Score=20.53 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=21.5
Q ss_pred HHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14877 14 LYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYAT 51 (221)
Q Consensus 14 i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~ 51 (221)
+.+--++|+++-|.+++.. +.+=++++|+.||..
T Consensus 33 ~vkrctKPdrkEf~kiaka----t~iGf~imG~IGy~I 66 (81)
T PTZ00478 33 LIRKCTKPDAKEYTNIAYA----CSVGFFIMGFIGYSI 66 (81)
T ss_pred HHHHhcCCCHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 3344567887777775533 344466778888864
No 79
>PRK11017 codB cytosine permease; Provisional
Probab=31.51 E-value=3.8e+02 Score=23.87 Aligned_cols=106 Identities=13% Similarity=0.109 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhh
Q psy14877 33 SVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHV 112 (221)
Q Consensus 33 a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~ 112 (221)
++.+...+-..+|...-...|+. |+.+.... +......-+...+...++.-...+..--.+.++.+ .+++ +.
T Consensus 223 g~~i~~~~~~~~G~~~a~~~~~~---d~~~~~~~-~~~~~~~l~~~~l~~~t~n~~~~ys~~l~~~~l~~---~~~~-~~ 294 (404)
T PRK11017 223 AFFLGNSLMFIFGAAGAAVYGQA---DISDVMIA-QGLLIPAIVMLGLNIWTTNDNALYASGLGFCNITR---LSSR-TL 294 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHH-hchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc---Ccch-HH
Confidence 33444444555555444455542 33322221 12222334444555555555556555555555531 1111 22
Q ss_pred hHHHHHHHHHHHHHH-hccchHHHHHHhhhhhhhhHH
Q psy14877 113 GFTLAIVLITYFISI-TTDCLGVVLELNGVLAAVPLA 148 (221)
Q Consensus 113 ~~~~~i~~~~~~lA~-~ip~~~~~~~l~Ga~~~~~l~ 148 (221)
. +....++.+++. ...++..++++.|...++...
T Consensus 295 ~--ii~~vi~~~i~~~~~~~~~~FL~~lg~~l~P~~g 329 (404)
T PRK11017 295 T--VVNGIIGTVLALWLYNNFVGWLTLLGSAIPPVGG 329 (404)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 1 222222233332 346677888888876665544
No 80
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=29.86 E-value=3.2e+02 Score=22.56 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=31.2
Q ss_pred CCChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccC
Q psy14877 66 WYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYH 105 (221)
Q Consensus 66 ~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~ 105 (221)
..+.+....++.+...+..+.|...+-.-.-+..-+.++|
T Consensus 61 ~~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~~E 100 (237)
T TIGR01912 61 PFAALELRIKSAFFIGLLLASPVLAYEAYRFIKPALKPHE 100 (237)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 3468888999999999999999998876666665555543
No 81
>PLN02680 carbon-monoxide oxygenase
Probab=29.77 E-value=1.8e+02 Score=24.13 Aligned_cols=68 Identities=15% Similarity=0.072 Sum_probs=47.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHHHHHHHhhhhhhhhHH
Q psy14877 24 FVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLVT 93 (221)
Q Consensus 24 ~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 93 (221)
|+.+|.+-...=....+-.++|+..-..+-++ .++-+-++-.+|+-...-.++.++.+.++....+|.
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 46667777777777777778888554444333 333333444578888888999999999988888875
No 82
>PRK14889 VKOR family protein; Provisional
Probab=29.37 E-value=1.6e+02 Score=22.36 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCCCCcCCccccccCCC
Q psy14877 171 PALGLALFGVMVAFVGLIQILYAI-QSGSVSKCMHGLAMPYCNKTQLNG 218 (221)
Q Consensus 171 ~~~~i~~~Gv~~~v~g~~~~i~~~-~~~~~~~~~~~~~~~~c~~~~~~~ 218 (221)
..+.+++.+++..+.+.|..+++. .++.+..||. ++..+|++-.+|.
T Consensus 8 ~~~ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~-~~~~~C~~Vl~S~ 55 (143)
T PRK14889 8 ILYLLLAFSLVGLIASIASYLLFTLLVKPPPFCTI-NSVINCSSVLSSP 55 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCCCCHHHHhcCc
Confidence 345666667776666665555442 3445566763 4456898877664
No 83
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=28.02 E-value=5e+02 Score=24.23 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=11.3
Q ss_pred hHHHhhhhhHhhhhcc
Q psy14877 146 PLAFILPALSYLKLES 161 (221)
Q Consensus 146 ~l~fi~P~l~yl~~~~ 161 (221)
++-.++|+++.++.+-
T Consensus 128 ~~l~~lp~~~~~~~~~ 143 (522)
T PRK09598 128 VVLGVLPGYIIYKIPL 143 (522)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3446899999877654
No 84
>PF12669 P12: Virus attachment protein p12 family
Probab=27.14 E-value=1.1e+02 Score=19.40 Aligned_cols=11 Identities=9% Similarity=0.280 Sum_probs=5.9
Q ss_pred CCccccccCCC
Q psy14877 208 MPYCNKTQLNG 218 (221)
Q Consensus 208 ~~~c~~~~~~~ 218 (221)
-..|..++.+.
T Consensus 43 ~~~C~~~~~~~ 53 (58)
T PF12669_consen 43 SSSCHSKKKSK 53 (58)
T ss_pred CCCCCCCCcch
Confidence 45566655544
No 85
>KOG1619|consensus
Probab=26.97 E-value=2.6e+02 Score=23.34 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=50.8
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCc-CCCChHHHHHHHHHHHHHHhhhhhhhhHH
Q psy14877 21 ASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENY-CWYDDLMNLARLAFSFTILLTYPIECLVT 93 (221)
Q Consensus 21 p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 93 (221)
+.+|+.+|.+-...=++.+.-.++|+..-..+-+... ..|+ +=.+|.-..+-.++.++-+.+|--.++|.
T Consensus 82 ~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~---i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 82 YTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG---IANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPG 152 (245)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---ccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445788888888888888888888877776655544 3443 32568888888888888888887777764
No 86
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=26.41 E-value=2.6e+02 Score=20.40 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=33.0
Q ss_pred CCCchhhhHHHHHHHHHHHHHH---hccchHHHHHHhhhhhhhhHHHhhhhhHhhhhccCCcccchh
Q psy14877 106 STDKQHVGFTLAIVLITYFISI---TTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQK 169 (221)
Q Consensus 106 ~~~~~~~~~~~~i~~~~~~lA~---~ip~~~~~~~l~Ga~~~~~l~fi~P~l~yl~~~~~~~~~~~~ 169 (221)
+.+.+++.+.+.+-.+-++++. .-..+..=..+..=+....+..++=-++++.+.+++..+|..
T Consensus 14 H~s~k~y~iGFvLsIiLT~ipF~~vm~~~~~~~~~~~~i~~lA~iQi~vqLvyFlHM~~~~eg~w~~ 80 (111)
T COG3125 14 HGSLKSYLIGFVLSIILTLIPFWVVMTGALSSTVTLIIILGLAVIQILVHLVYFLHMNTKSEGRWNM 80 (111)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhcccCCcccceeh
Confidence 3345566655555444444442 223333444444444455666666666677776554444544
No 87
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=24.94 E-value=5.4e+02 Score=23.58 Aligned_cols=16 Identities=25% Similarity=0.355 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhccc
Q psy14877 39 VVSLLFGIAGYATFTG 54 (221)
Q Consensus 39 ~~y~~~g~~gy~~fg~ 54 (221)
..-..+|+.|+..+.+
T Consensus 283 ~~~~~ig~~~~~~~~~ 298 (502)
T PRK15419 283 AGAVAVGFFGIAYFNE 298 (502)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3455677888777643
No 88
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=23.06 E-value=52 Score=29.43 Aligned_cols=136 Identities=11% Similarity=-0.029 Sum_probs=54.4
Q ss_pred HHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHh----cccCcc--hhhhcCcCCCChHHHHHHHHHH-HHHHhh
Q psy14877 13 LLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYAT----FTGNVQ--GDLLENYCWYDDLMNLARLAFS-FTILLT 85 (221)
Q Consensus 13 ~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~----fg~~~~--~~il~~~~~~~~~~~~~~~~~~-i~~~~s 85 (221)
...+.+|+++. -.+....++.........+|.+|-.. .++..- .+++..+.+. ....+.-+... ......
T Consensus 223 DysRy~~~~~~--~~~~~~~~~~~~~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~l~i~~~~~~~~ 299 (440)
T PF02133_consen 223 DYSRYAKSDTS--AWWGFWLGFPGGFIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLPP-FGGFFPALLILFASIWTN 299 (440)
T ss_dssp HHHTTC--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--HH-HHHHHHH-HHHHHHHTTH
T ss_pred cHHhhCCCCCC--cEEEEeehhhhHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcch-hHHHHHHHHHHHHHHHHh
Confidence 44555555542 23445555655566666666555443 333221 2334444321 01111111122 222233
Q ss_pred hhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhccc----hHHHHHHhhhhhhhhHHHhhhh
Q psy14877 86 YPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDC----LGVVLELNGVLAAVPLAFILPA 153 (221)
Q Consensus 86 ~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~ip~----~~~~~~l~Ga~~~~~l~fi~P~ 153 (221)
.-...++.-..+.+...+ +.+++++.... .++...........+ +..++++.|.+.++....++==
T Consensus 300 ~~~n~ys~~~~l~~~~~~-~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~f~~fL~~lg~~~~P~~gI~i~D 369 (440)
T PF02133_consen 300 NAANLYSAGLALQNIFPK-RISRRRGVIIV-GVIGIAIAPWGLLGNFSFLFTNFLSLLGYFLGPWAGIMIAD 369 (440)
T ss_dssp HHHHTHHHHHHHHCCSTT-T--HHHHHHHH-HHHHHCT-GGGTCCCCHC----HCCCCCHTTHHHHHHHHHH
T ss_pred hhhhHhhHHHHHHHccce-eecchHHHHHH-HHHHHHHHHHHHHhchhhhHHHHHHHHHHhchhHHHHHHHH
Confidence 345667777777666431 12222222222 122222222212233 5567778888877766654433
No 89
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=22.44 E-value=1.3e+02 Score=24.72 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=17.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCc
Q psy14877 23 QFVWDKLTHISVAVAFVVSLLFGIAGYA-TFTGNV 56 (221)
Q Consensus 23 ~~~~~~v~~~a~~~~~~~y~~~g~~gy~-~fg~~~ 56 (221)
++|-.+++++++.++. +++.+++|. .||+..
T Consensus 9 rRK~N~iLNiaI~IV~---lLIiiva~~lf~~~~~ 40 (217)
T PF07423_consen 9 RRKTNKILNIAIGIVS---LLIIIVAYQLFFGGDD 40 (217)
T ss_pred hhhhhhhHHHHHHHHH---HHHHHHhhhheecCCC
Confidence 3466778888776666 344444444 444543
No 90
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.81 E-value=9.8e+02 Score=25.42 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=23.1
Q ss_pred hhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14877 18 IEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATF 52 (221)
Q Consensus 18 m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~f 52 (221)
+++++.+|.-.-....+++.+.+|+.++++.|-.-
T Consensus 13 ~~~~~~~rrL~E~~gIlLlllAlfL~lALiSYsPs 47 (1355)
T PRK10263 13 LTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPS 47 (1355)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34555444444444556788888999999888763
No 91
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.68 E-value=2.8e+02 Score=22.01 Aligned_cols=68 Identities=12% Similarity=0.023 Sum_probs=47.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHHHHHHHhhhhhhhhHH
Q psy14877 24 FVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLVT 93 (221)
Q Consensus 24 ~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 93 (221)
|+.+|.+-..+=....+..++|+..-..+-++. .+-+.++-.+|.-...-.++.++-+.++....+|.
T Consensus 67 k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~ 134 (179)
T cd08762 67 KLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--HTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPW 134 (179)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 355677777777777778888886655554442 33333443568888888899999999888877774
No 92
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.43 E-value=1.4e+02 Score=22.13 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Q psy14877 172 ALGLALFGVMVAFVGLIQILYAIQS 196 (221)
Q Consensus 172 ~~~i~~~Gv~~~v~g~~~~i~~~~~ 196 (221)
++..+++|+++.++|+..-|.-+++
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHH
Confidence 4566666766666666665555554
No 93
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=21.41 E-value=3.3e+02 Score=19.75 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=12.3
Q ss_pred hHHHhhhhhHhhhhccCCcccch
Q psy14877 146 PLAFILPALSYLKLESGSIFSKQ 168 (221)
Q Consensus 146 ~l~fi~P~l~yl~~~~~~~~~~~ 168 (221)
....+.=-.+++.+.+++..+|.
T Consensus 55 ~vQi~VqL~~FLHl~~~~~~~wn 77 (109)
T PRK10582 55 VVQILVHLVCFLHMNTKSDEGWN 77 (109)
T ss_pred HHHHHHHHHHHhcccCCcccchH
Confidence 45555555666666544333333
No 94
>PF03203 MerC: MerC mercury resistance protein
Probab=21.06 E-value=3e+02 Score=19.82 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14877 172 ALGLALFGVMVAFVGL 187 (221)
Q Consensus 172 ~~~i~~~Gv~~~v~g~ 187 (221)
...+...|......+.
T Consensus 67 ~~~l~~~G~~ll~~~~ 82 (116)
T PF03203_consen 67 PLALGVIGLALLLLAL 82 (116)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555655555554
No 95
>PRK10484 putative transporter; Provisional
Probab=20.96 E-value=6.6e+02 Score=23.15 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=20.6
Q ss_pred HHHhhccchHhHHHHHHHHHHHHHHH---HHHHHHHHHHhccc
Q psy14877 15 YESIEGASQFVWDKLTHISVAVAFVV---SLLFGIAGYATFTG 54 (221)
Q Consensus 15 ~~~m~~p~~~~~~~v~~~a~~~~~~~---y~~~g~~gy~~fg~ 54 (221)
++-+.-++.|..++....+.....+. ....|..++..|.|
T Consensus 265 qR~~aak~~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~ 307 (523)
T PRK10484 265 QRALGAKNLAEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGD 307 (523)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44454454445555444443332222 33457777777765
No 96
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=20.35 E-value=3e+02 Score=18.84 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=19.8
Q ss_pred HHhhhhhhhhHHHhhhhhHhhhhcc
Q psy14877 137 ELNGVLAAVPLAFILPALSYLKLES 161 (221)
Q Consensus 137 ~l~Ga~~~~~l~fi~P~l~yl~~~~ 161 (221)
++.+...+..++++.|+.-=.|.-+
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~ 26 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALK 26 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888889999999987777644
No 97
>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.
Probab=20.35 E-value=1.9e+02 Score=21.31 Aligned_cols=44 Identities=9% Similarity=0.056 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC---CCCCCCCCcCCccccccCCC
Q psy14877 174 GLALFGVMVAFVGLIQILYAIQSGS---VSKCMHGLAMPYCNKTQLNG 218 (221)
Q Consensus 174 ~i~~~Gv~~~v~g~~~~i~~~~~~~---~~~~~~~~~~~~c~~~~~~~ 218 (221)
.+.++++++...+.|...+++-.+. ...|+. ++..+|++-.+|.
T Consensus 4 ~~~~l~liGl~~s~~l~~~~~~~~~~~~~~~C~~-~~~~~C~~Vl~S~ 50 (137)
T PF07884_consen 4 LLLALSLIGLLVSIYLLYVEMGLSRPGYSPFCDI-GPRISCDAVLNSP 50 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------S------------SGGGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccccCCCCc-ccCCCHHHHhhcc
Confidence 4445555556666666666554433 355653 3678888876654
Done!