Query psy14877
Match_columns 221
No_of_seqs 120 out of 1300
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 23:05:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 97.8 0.00045 1.5E-08 60.4 14.9 157 2-163 201-379 (445)
2 3gia_A Uncharacterized protein 97.3 0.0022 7.6E-08 55.9 11.5 51 2-53 198-248 (444)
3 4djk_A Probable glutamate/gamm 97.2 0.0098 3.4E-07 52.8 14.4 53 2-55 211-263 (511)
4 3kp9_A Vkorc1/thioredoxin doma 67.9 6 0.0002 32.7 4.5 59 156-217 4-62 (291)
5 4b4a_A TATC, SEC-independent p 66.8 48 0.0016 26.5 15.7 97 64-160 55-175 (249)
6 2jln_A MHP1; hydantoin, transp 60.5 88 0.003 27.4 14.7 76 71-150 298-377 (501)
7 2ww9_B Protein transport prote 35.3 54 0.0018 21.5 4.0 31 17-51 38-68 (80)
8 1rh5_B Preprotein translocase 33.8 58 0.002 21.0 4.0 33 16-52 24-56 (74)
9 3mp7_B Preprotein translocase 31.7 87 0.003 19.3 4.4 34 14-51 18-51 (61)
10 1afo_A Glycophorin A; integral 29.7 78 0.0027 17.7 3.7 23 173-195 12-34 (40)
11 1du9_A BMP02 neurotoxin; helix 27.2 8.4 0.00029 19.8 -0.7 16 199-214 7-22 (28)
12 2ktc_A Potassium channel toxin 26.0 11 0.00039 20.1 -0.4 16 199-214 9-24 (34)
13 3dh4_A Sodium/glucose cotransp 24.1 3.6E+02 0.012 23.6 17.9 39 14-52 242-283 (530)
14 2wwb_B SEC61gamma, protein tra 21.9 91 0.0031 19.7 3.2 34 14-51 21-54 (68)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=97.84 E-value=0.00045 Score=60.37 Aligned_cols=157 Identities=11% Similarity=0.017 Sum_probs=85.7
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-c---hhh---hcCcCCCChHHHHH
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNV-Q---GDL---LENYCWYDDLMNLA 74 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~-~---~~i---l~~~~~~~~~~~~~ 74 (221)
.|+|.+...+....+|+|||++ +.++....+...+.++|+...+......+.+. . ++. .+... .++...+.
T Consensus 201 ~~af~G~e~~~~~~~e~k~p~r-~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~ 278 (445)
T 3l1l_A 201 LWSFIGVESASVAAGVVKNPKR-NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIV 278 (445)
T ss_dssp HHTTTTTTHHHHGGGGBSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHH
T ss_pred HHHHHhHHHHHHHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHH
Confidence 4678889999999999999974 68899999999999999999887766665432 1 111 11110 12333444
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHhccc-------CCCCchhhhHHHHH--HHHHHHHHHh--cc----chHHHHHHh
Q psy14877 75 RLAFSFTILLTYPIECLVTRSVLLQVLNAY-------HSTDKQHVGFTLAI--VLITYFISIT--TD----CLGVVLELN 139 (221)
Q Consensus 75 ~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~-------~~~~~~~~~~~~~i--~~~~~~lA~~--ip----~~~~~~~l~ 139 (221)
.+...+..+.+.--..+...+.+..+=+.+ +.+ .++.-.+..+ ..++.++... .| .++.+.++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (445)
T 3l1l_A 279 SFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVS 357 (445)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444444444444434444444333332221 111 1111111111 1112222222 23 345555554
Q ss_pred hhhhhhhHHHhhhhhHhhhhccCC
Q psy14877 140 GVLAAVPLAFILPALSYLKLESGS 163 (221)
Q Consensus 140 Ga~~~~~l~fi~P~l~yl~~~~~~ 163 (221)
+ .+..+.|.++++.+++.++++
T Consensus 358 ~--~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 358 V--IFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp H--HHHHHHHHHHHHHHHHHHSSS
T ss_pred H--HHHHHHHHHHHHHHHHHhhcC
Confidence 4 345688999999988876543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.28 E-value=0.0022 Score=55.93 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=43.5
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFT 53 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg 53 (221)
.|+|.+...+....+|+|||++ +.++....+...+.++|....+......+
T Consensus 198 ~~a~~G~e~~~~~~~e~k~P~r-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 198 FLSYMGFGVITNASEHIENPKK-NVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp GGGGTHHHHHHTTGGGBSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhHHHHHHHHHHccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4788999999999999999974 58999999999999999998877655554
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.16 E-value=0.0098 Score=52.77 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=44.8
Q ss_pred eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy14877 2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGN 55 (221)
Q Consensus 2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~ 55 (221)
.|+|.+...+....+|+|||++ +.+++...++.++.++|....+.-....+++
T Consensus 211 ~~a~~G~e~~~~~a~E~k~P~k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 211 ILSYMGVEASATHVNEMSNPGR-DYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp HHHHTTGGGGTGGGSSSSCCTT-THHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHhhHHHHHHHHHhccCccc-chhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 3678888888999999999984 5899999999999999999988776666543
No 4
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=67.88 E-value=6 Score=32.70 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=31.5
Q ss_pred hhhhccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCccccccCC
Q psy14877 156 YLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYCNKTQLN 217 (221)
Q Consensus 156 yl~~~~~~~~~~~~i~~~~i~~~Gv~~~v~g~~~~i~~~~~~~~~~~~~~~~~~~c~~~~~~ 217 (221)
|++++.++-...+|+..+.+.+.|+++++.+.|.++.++-......|+.. .+|++--++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~iGl~~s~yLt~~~~~~~~~~~C~~~---~sC~~Vl~S 62 (291)
T 3kp9_A 4 YLKLKAQEETWLQRHSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGD---GGSDLVLSS 62 (291)
T ss_dssp ------------CCSCSHHHHHHHHHHHHHHHHHHHHHHHCCCCSCCCC------CCSGGGS
T ss_pred hhhhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---CChhhhccc
Confidence 44443332222344556677788888888888888888754456777653 688876554
No 5
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=66.78 E-value=48 Score=26.53 Aligned_cols=97 Identities=11% Similarity=0.181 Sum_probs=62.5
Q ss_pred cCCCChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhH-HHHHHHHHHHHHHh--------------
Q psy14877 64 YCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGF-TLAIVLITYFISIT-------------- 128 (221)
Q Consensus 64 ~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~-~~~i~~~~~~lA~~-------------- 128 (221)
....+.+..-.++.....++.+.|..++-.-.-+..-+.++|.+.....+. ...+.......+..
T Consensus 55 t~~~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~ 134 (249)
T 4b4a_A 55 LSPTEPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLG 134 (249)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSS
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334578999999999999999999988877666666666555444433332 22222222222321
Q ss_pred ------cc--chHHHHHHhhhhh-hhhHHHhhhhhHhhhhc
Q psy14877 129 ------TD--CLGVVLELNGVLA-AVPLAFILPALSYLKLE 160 (221)
Q Consensus 129 ------ip--~~~~~~~l~Ga~~-~~~l~fi~P~l~yl~~~ 160 (221)
.| ++++.++++-.+. ..-++|-+|-++.+-.+
T Consensus 135 ~~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~ 175 (249)
T 4b4a_A 135 FTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQK 175 (249)
T ss_dssp STTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred hhhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15 7777777776655 34588999998886543
No 6
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=60.47 E-value=88 Score=27.44 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=39.6
Q ss_pred HHHHH-HHHHHHHHhhhhh-hhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhc--cchHHHHHHhhhhhhhh
Q psy14877 71 MNLAR-LAFSFTILLTYPI-ECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITT--DCLGVVLELNGVLAAVP 146 (221)
Q Consensus 71 ~~~~~-~~~~i~~~~s~pl-~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~i--p~~~~~~~l~Ga~~~~~ 146 (221)
....- +.+.+..+.+.-. ..++.-..+..+..+. .+ .++ ..++..++.++++... ..+..++++.|.+.++.
T Consensus 298 ~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~-i~-~~~--~~~i~~vi~~~i~~~~~~~~f~~FL~~lg~~l~P~ 373 (501)
T 2jln_A 298 MAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRV-FT-FKT--GVIVSAVVGLLMMPWQFAGVLNTFLNLLASALGPL 373 (501)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTT-CC-HHH--HHHHHHHHHHHTCGGGTHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCccc-cc-hhH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44444 5566666666654 7888888888775321 11 122 1222222333333322 45666777777777665
Q ss_pred HHHh
Q psy14877 147 LAFI 150 (221)
Q Consensus 147 l~fi 150 (221)
....
T Consensus 374 ~gI~ 377 (501)
T 2jln_A 374 AGIM 377 (501)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5533
No 7
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=35.31 E-value=54 Score=21.50 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=19.6
Q ss_pred HhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14877 17 SIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYAT 51 (221)
Q Consensus 17 ~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~ 51 (221)
--++|+++-|.+++.. +.+-.+++|+.||..
T Consensus 38 ~~~KPdr~Ef~~iak~----t~iG~~imG~IGfiI 68 (80)
T 2ww9_B 38 KCKKPDLKEYTKIVKA----VGIGFIAVGIIGYAI 68 (80)
T ss_dssp SCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3457887777775544 334456677777764
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=33.78 E-value=58 Score=20.98 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=20.1
Q ss_pred HHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14877 16 ESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATF 52 (221)
Q Consensus 16 ~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~f 52 (221)
+--++|+++-|.+++..+ .+-.+++|+.||...
T Consensus 24 k~~~KPdr~EF~~iak~~----~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 24 LVLKKPTKDEYLAVAKVT----ALGISLLGIIGYIIH 56 (74)
T ss_dssp HSEECCCHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 334578877787765443 334456677777654
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=31.75 E-value=87 Score=19.28 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=20.8
Q ss_pred HHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14877 14 LYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYAT 51 (221)
Q Consensus 14 i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~ 51 (221)
+.+--++|+++-|.+++..+ .+-..++|+.||..
T Consensus 18 vlk~~~KPd~~Ef~~iak~~----~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 18 AFLVTKKPNWATYKRAAKIT----GLGIILIGLIGMLI 51 (61)
T ss_dssp HHHHSCCCCTTHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 44555688887787766543 33345566666653
No 10
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=29.67 E-value=78 Score=17.69 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14877 173 LGLALFGVMVAFVGLIQILYAIQ 195 (221)
Q Consensus 173 ~~i~~~Gv~~~v~g~~~~i~~~~ 195 (221)
..++++|+.+.++|+...+.-.+
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I 34 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGI 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777766655443
No 11
>1du9_A BMP02 neurotoxin; helix, sheet; NMR {Mesobuthus martensii} SCOP: g.3.7.2 PDB: 1wm8_A
Probab=27.21 E-value=8.4 Score=19.76 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.2
Q ss_pred CCCCCCCCcCCccccc
Q psy14877 199 VSKCMHGLAMPYCNKT 214 (221)
Q Consensus 199 ~~~~~~~~~~~~c~~~ 214 (221)
+.+|.++.+.+.|++.
T Consensus 7 P~HC~~k~a~~~Cdn~ 22 (28)
T 1du9_A 7 PMHCKGKNAKPTCDDG 22 (28)
T ss_dssp HHHSCSSSCCEEEETT
T ss_pred hhhhccccccccccCC
Confidence 4578999999999875
No 12
>2ktc_A Potassium channel toxin alpha-KTX 9.4; BTK-2, scorpion toxin, KV1.1, disulfide bond, ionic channel inhibitor, neurotoxin; NMR {Mesobuthus tamulus}
Probab=25.95 E-value=11 Score=20.14 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=13.6
Q ss_pred CCCCCCCCcCCccccc
Q psy14877 199 VSKCMHGLAMPYCNKT 214 (221)
Q Consensus 199 ~~~~~~~~~~~~c~~~ 214 (221)
+.+|.++.+.|.|++.
T Consensus 9 P~HCk~k~A~~tCdn~ 24 (34)
T 2ktc_A 9 PMHCKGKMAKPTCENE 24 (34)
T ss_dssp HHTCCTTCCCEEEETT
T ss_pred hhhhccccccccccCC
Confidence 4688999999999875
No 13
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=24.07 E-value=3.6e+02 Score=23.56 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=19.8
Q ss_pred HHHHhhccchHhHHHHHHHHHHHHHHH---HHHHHHHHHHhc
Q psy14877 14 LYESIEGASQFVWDKLTHISVAVAFVV---SLLFGIAGYATF 52 (221)
Q Consensus 14 i~~~m~~p~~~~~~~v~~~a~~~~~~~---y~~~g~~gy~~f 52 (221)
+++-|.-++.|..++....+......+ -...|+.++..+
T Consensus 242 ~qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~ 283 (530)
T 3dh4_A 242 IQRTLAAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVIT 283 (530)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444443333222 245566666666
No 14
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=21.90 E-value=91 Score=19.68 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=21.7
Q ss_pred HHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14877 14 LYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYAT 51 (221)
Q Consensus 14 i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~ 51 (221)
+.+--++|+++-|.+++.. +.+-.+++|+.||..
T Consensus 21 ~lk~~~KPdr~Ef~~iak~----~~iG~~i~G~IGf~I 54 (68)
T 2wwb_B 21 LVKRCTKPDRKEFQKIAMA----TAIGFAIMGFIGFFV 54 (68)
T ss_dssp HHHHCCCCCTHHHHHHHHH----SSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4445568888778776544 333456677777764
Done!