Query psy14877
Match_columns 221
No_of_seqs 120 out of 1300
Neff 8.3
Searched_HMMs 13730
Date Fri Aug 16 23:06:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14877.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14877hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 45.2 16 0.0011 20.9 3.9 35 14-52 11-45 (56)
2 d1wm8a_ g.3.7.2 (A:) Neurotoxi 33.7 12 0.00088 17.6 1.7 19 199-217 7-25 (28)
3 d2dj7a1 g.39.1.3 (A:44-74) Act 20.5 5.6 0.00041 19.9 -1.0 14 203-216 14-27 (31)
4 d1wpga4 f.33.1.1 (A:1-124,A:24 11.3 2E+02 0.015 22.6 6.0 25 115-139 414-438 (472)
5 d1v7fa_ g.3.6.2 (A:) Phrixotox 8.1 56 0.0041 15.3 0.6 11 205-215 3-13 (29)
6 d1ciya3 f.1.3.1 (A:33-255) del 6.3 2E+02 0.015 20.3 3.4 28 115-142 5-32 (223)
7 d1bgka_ g.19.1.1 (A:) Sea anem 5.8 8.2 0.0006 19.3 -3.3 17 199-215 8-24 (37)
8 d1kqfb2 f.23.22.1 (B:246-290) 5.8 2.3E+02 0.017 14.9 3.5 31 26-56 8-38 (45)
9 d2glia4 g.37.1.1 (A:198-228) F 5.8 90 0.0065 15.1 0.7 13 207-219 6-18 (31)
10 d2h8pc1 f.14.1.1 (C:22-78) Pot 4.9 2.9E+02 0.021 15.0 3.3 36 30-66 8-43 (57)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=45.18 E-value=16 Score=20.88 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=21.2
Q ss_pred HHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14877 14 LYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATF 52 (221)
Q Consensus 14 i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~f 52 (221)
+.+--++|+++-|.++... +.+=.+++|+.||..+
T Consensus 11 vlk~~~KP~~~Ef~~ia~v----~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 11 VWLVLKKPTKDEYLAVAKV----TALGISLLGIIGYIIH 45 (56)
T ss_dssp HHHSEECCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3344468888777775543 3334556777777654
No 2
>d1wm8a_ g.3.7.2 (A:) Neurotoxin bmp03 {Chinese scorpion (Buthus martensii karsch) [TaxId: 34649]}
Probab=33.68 E-value=12 Score=17.58 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=14.7
Q ss_pred CCCCCCCCcCCccccccCC
Q psy14877 199 VSKCMHGLAMPYCNKTQLN 217 (221)
Q Consensus 199 ~~~~~~~~~~~~c~~~~~~ 217 (221)
+.+|.++.+-|.|++.--|
T Consensus 7 p~hckgk~a~ptc~dgvcn 25 (28)
T d1wm8a_ 7 PMHCKGKNANPTCDDGVCN 25 (28)
T ss_dssp TGGGCSSSCCSCCCSSSCC
T ss_pred cccccCcCCCCcccCcccc
Confidence 5678899999999886433
No 3
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.48 E-value=5.6 Score=19.86 Aligned_cols=14 Identities=21% Similarity=0.562 Sum_probs=10.9
Q ss_pred CCCCcCCccccccC
Q psy14877 203 MHGLAMPYCNKTQL 216 (221)
Q Consensus 203 ~~~~~~~~c~~~~~ 216 (221)
.++++.|+|++.+.
T Consensus 14 m~kdG~PyCe~DY~ 27 (31)
T d2dj7a1 14 ISKDGVPYCESDYH 27 (31)
T ss_dssp EEETTEEECTTHHH
T ss_pred ecCCCCcccHHHHH
Confidence 45789999998653
No 4
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=11.26 E-value=2e+02 Score=22.64 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHh
Q psy14877 115 TLAIVLITYFISITTDCLGVVLELN 139 (221)
Q Consensus 115 ~~~i~~~~~~lA~~ip~~~~~~~l~ 139 (221)
.+++.++..++.+.+|.++.+++..
T Consensus 414 av~i~~~l~~~i~yiP~l~~vf~~~ 438 (472)
T d1wpga4 414 SICLSMSLHFLILYVDPLPMIFKLK 438 (472)
T ss_dssp HHHHHHHHHHHHHHSTTTHHHHTCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHccc
Confidence 3333333334456688877766553
No 5
>d1v7fa_ g.3.6.2 (A:) Phrixotoxin 1 (PaTX1) {Chilean copper tarantula (Phrixotrichus auratus) [TaxId: 269635]}
Probab=8.14 E-value=56 Score=15.30 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=7.4
Q ss_pred CCcCCcccccc
Q psy14877 205 GLAMPYCNKTQ 215 (221)
Q Consensus 205 ~~~~~~c~~~~ 215 (221)
.+=||.|+++.
T Consensus 3 qkwmwtcds~r 13 (29)
T d1v7fa_ 3 QKWMWTCDSAR 13 (29)
T ss_dssp BCTTCBCCTTC
T ss_pred hhheeeccchh
Confidence 35588888764
No 6
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=6.26 E-value=2e+02 Score=20.28 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHhhhh
Q psy14877 115 TLAIVLITYFISITTDCLGVVLELNGVL 142 (221)
Q Consensus 115 ~~~i~~~~~~lA~~ip~~~~~~~l~Ga~ 142 (221)
.+.+-+...+++.++|..|.++++++-+
T Consensus 5 ~i~~~~~~~ll~~~iP~~g~~~~li~~l 32 (223)
T d1ciya3 5 DISLSLTQFLLSEFVPGAGFVLGLVDII 32 (223)
T ss_dssp HHHHHHHHHHHHCCSSSHHHHHHHHHHT
T ss_pred hhHHHHHHHHhhhcCCchHHHHHHHHHH
Confidence 4455667778888899998887655433
No 7
>d1bgka_ g.19.1.1 (A:) Sea anemone toxin k {Sea anemone (Bunodosoma granulifera), BGK [TaxId: 31164]}
Probab=5.80 E-value=8.2 Score=19.29 Aligned_cols=17 Identities=24% Similarity=0.597 Sum_probs=11.7
Q ss_pred CCCCCCCCcCCcccccc
Q psy14877 199 VSKCMHGLAMPYCNKTQ 215 (221)
Q Consensus 199 ~~~~~~~~~~~~c~~~~ 215 (221)
+..|+|.+..++|-..|
T Consensus 8 etacrhakslgncrtsq 24 (37)
T d1bgka_ 8 ETACRHAKSLGNCRTSQ 24 (37)
T ss_dssp HHHHHHHHHHSTTTTSH
T ss_pred HHHHHHHHhhccchhhH
Confidence 55677888888776543
No 8
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=5.77 E-value=2.3e+02 Score=14.86 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q psy14877 26 WDKLTHISVAVAFVVSLLFGIAGYATFTGNV 56 (221)
Q Consensus 26 ~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~ 56 (221)
++.++.-.-...+..-...|++=|...|.+.
T Consensus 8 WKgv~Kpl~~~~~~~~~~~~~fHYv~vGPn~ 38 (45)
T d1kqfb2 8 WKGALKPLAAAGFIATFAGLIFHYIGIGPNK 38 (45)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHCCBC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhheeCCCc
Confidence 3444444445555566677788888888764
No 9
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.76 E-value=90 Score=15.08 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=9.3
Q ss_pred cCCccccccCCCc
Q psy14877 207 AMPYCNKTQLNGT 219 (221)
Q Consensus 207 ~~~~c~~~~~~~~ 219 (221)
+.|.|.+-.+|..
T Consensus 6 ~~~gC~KafsNsS 18 (31)
T d2glia4 6 EHEGCSKAFSNAS 18 (31)
T ss_dssp CSTTCCCEESSSS
T ss_pred cCCChhhhhcchh
Confidence 5678888877753
No 10
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=4.89 E-value=2.9e+02 Score=15.02 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCC
Q psy14877 30 THISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCW 66 (221)
Q Consensus 30 ~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~ 66 (221)
+..+..+..++-++.+..-|+.=.+ .+++-+.++|+
T Consensus 8 ~~~~~~~~~i~i~~~s~~~y~~E~~-~~~~~f~sip~ 43 (57)
T d2h8pc1 8 AGAATVLLVIVLLAGSYLAVLAERG-APGAQLITYPR 43 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-STTCCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCCccccccch
Confidence 3444444444445556666666433 34444666664
Done!