RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14877
(221 letters)
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein.
This transmembrane region is found in many amino acid
transporters including UNC-47 and MTR. UNC-47 encodes a
vesicular amino butyric acid (GABA) transporter, (VGAT).
UNC-47 is predicted to have 10 transmembrane domains.
MTR is a N system amino acid transporter system protein
involved in methyltryptophan resistance. Other members
of this family include proline transporters and amino
acid permeases.
Length = 406
Score = 94.3 bits (235), Expect = 9e-23
Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 13/201 (6%)
Query: 4 AFMCHHNVFLLYESIEGASQFVWD-KLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLE 62
AF H + + +++ S+F K+ ++ + V+ +L G+ GY F NV+G++L
Sbjct: 205 AFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILL 264
Query: 63 NYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDK-------QHVGFT 115
N D L+++A L +LL+YP++ R ++ +L ++ K V
Sbjct: 265 NLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIR 324
Query: 116 LAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLP---- 171
+V+ITY I+I+ LG L L G + PL FILP L +LKL+ S +KL
Sbjct: 325 SGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDI 384
Query: 172 -ALGLALFGVMVAFVGLIQIL 191
+ + G+++ G+ ++
Sbjct: 385 LDVICIVIGLLLMAYGVAGLI 405
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 34.2 bits (79), Expect = 0.040
Identities = 45/209 (21%), Positives = 72/209 (34%), Gaps = 23/209 (11%)
Query: 4 AFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLEN 63
+F H N+ L + S+ K I +A V+ +L G + F V G++L
Sbjct: 205 SFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAA 264
Query: 64 YCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAY----------HSTDKQHVG 113
L++ A + +L+ + ++ L Y G
Sbjct: 265 KEQNISLLS-ALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPG 323
Query: 114 FTLAIVLITYFISITTDC--LGVVLELN--GVLAAVPLAFILPALSYLKLESGSIFSKQK 169
+L I G + L G L A A I+PAL ++K K
Sbjct: 324 RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIK----PRKLIYK 379
Query: 170 LPAL----GLALFGVMVAFVGLIQILYAI 194
LPAL G L ++V G++ IL
Sbjct: 380 LPALKVYGGNFLLLLLVLLFGILVILSPF 408
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional.
Length = 467
Score = 31.8 bits (72), Expect = 0.29
Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 38/216 (17%)
Query: 4 AFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLEN 63
A++ + +Y + S + + I++ + F + +L GY F NV G +L
Sbjct: 268 AYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLM 327
Query: 64 YCWYDDLMNLARLAFSFTILL-----TYPIECLVTRSVLLQVLNAYHSTDKQHVGF---- 114
Y D +N + F +L +Y + + R+ L V+ D + V F
Sbjct: 328 Y----DPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVI----GWDARKVAFWKHC 379
Query: 115 ----TLAIVLIT--YFI-SITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSK 167
TL++V++ FI I T VL G ++ L FILPAL L + SG F+
Sbjct: 380 IAVVTLSVVMLLCGLFIPKINT-----VLGFAGSISGGLLGFILPAL--LFMYSGG-FTW 431
Query: 168 QK------LPALGLALFGVMVAFVGLIQILYAIQSG 197
QK + + + GV+ G ++ + G
Sbjct: 432 QKVGPFYYISTYVVLITGVIAIVFGTGATIWGVTVG 467
>gnl|CDD|224061 COG1138, CcmF, Cytochrome c biogenesis factor [Posttranslational
modification, protein turnover, chaperones].
Length = 648
Score = 28.1 bits (63), Expect = 3.9
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 145 VPLAFILPALSYLKLESG---SIFSKQKLPALGLALFGVMVAFVGLIQILYAIQSGSVSK 201
LAF L L + SG S+ + PA G+ L ++V +G +L+A++ ++
Sbjct: 279 AILAFSLSLLGTFLVRSGVLVSVHAFALDPARGVFLLIILVLLIGGSLVLFALR-APSAR 337
Query: 202 CMHGLAMPYCNKTQL 216
+ L
Sbjct: 338 LPAVGFALLSREGLL 352
>gnl|CDD|235332 PRK05031, PRK05031, tRNA (uracil-5-)-methyltransferase; Validated.
Length = 362
Score = 27.5 bits (62), Expect = 6.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 53 TGNVQGDLLENYC 65
T +GDLLE YC
Sbjct: 203 TKGSKGDLLELYC 215
>gnl|CDD|233197 TIGR00937, 2A51, chromate transporter, chromate ion transporter
(CHR) family. Members of this family probably act as
chromate transporters, and are found in Pseudomonas
aeruginosa, Alcaligenes eutrophus, Vibrio cholerae,
Bacillus subtilis, cyanobacteria and archaea. The
protein reduces chromate accumulation and is essential
for chromate resistance. Cutoffs for this model have now
been lowered, compared to a previous version, giving the
model a scope more similar to that of pfam02417. Members
of the original, more narrowly defined family score
above 500.00 bits [Transport and binding proteins,
Anions].
Length = 368
Score = 27.3 bits (61), Expect = 6.3
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 131 CLGVVLELNGVLAAVP--LAFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLI 188
+ + L G++ A+ LAF LP+ + + + LPA+G +G+ A + LI
Sbjct: 54 AIYLGYLLGGIVGAILAGLAFTLPSFLLVVALAWAYVHYGSLPAVGAWFYGLQAAVIALI 113
Query: 189 QI 190
Sbjct: 114 AQ 115
>gnl|CDD|225870 COG3333, COG3333, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 504
Score = 26.8 bits (60), Expect = 9.1
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 16/64 (25%)
Query: 140 GVLAAVPLAFILPALSYLKLESG----------------SIFSKQKLPALGLALFGVMVA 183
G+++ + L F+ P L+ L L+ G + L L A G+++A
Sbjct: 121 GLVSTLGLLFLAPPLAKLALKFGPAEYFALMVFGLVSVAGLSGGSLLKGLASAALGLLLA 180
Query: 184 FVGL 187
VG+
Sbjct: 181 TVGI 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.141 0.426
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,049,323
Number of extensions: 1062269
Number of successful extensions: 1761
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1748
Number of HSP's successfully gapped: 83
Length of query: 221
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 128
Effective length of database: 6,812,680
Effective search space: 872023040
Effective search space used: 872023040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.7 bits)