RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14877
         (221 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 50/223 (22%), Positives = 76/223 (34%), Gaps = 84/223 (37%)

Query: 41  SLLF-----GIAG-YATFTGNVQG-------DLLENYCWY----DDLMN-----LARLAF 78
           S LF     G A   A F G  QG       +L + Y  Y     DL+      L+ L  
Sbjct: 143 SALFRAVGEGNAQLVAIFGG--QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200

Query: 79  S-------FT-------------------ILLTYPIEC-LVTRSVLLQVLNAYHSTDKQH 111
           +       FT                    LL+ PI C L+    ++Q+ + Y  T K  
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG---VIQLAH-YVVTAKLL 256

Query: 112 VGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLP 171
            GFT    L +Y    T           G++ AV +A      S+   ES   F      
Sbjct: 257 -GFTPGE-LRSYLKGATG-HSQ------GLVTAVAIA---ETDSW---ES---FFVSVRK 298

Query: 172 ALGLALFGVMVAFVGL-IQILY---AIQSGSVSKCM-HGLAMP 209
           A+ + LF     F+G+     Y   ++    +   + +   +P
Sbjct: 299 AITV-LF-----FIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335



 Score = 33.1 bits (75), Expect = 0.076
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 28/165 (16%)

Query: 29  LTHISVAVAFVVS-LLFGIAG--YATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLT 85
           L+H S+    +V    F IA      F   +  +  E +   D+    A L   F   L 
Sbjct: 11  LSHGSLEHVLLVPTASFFIASQLQEQFNKILP-EPTEGFAADDEPTTPAELVGKF---LG 66

Query: 86  Y------PIECLVTRSVLLQVLNAYHST----DKQHVGFTLAIVLITYFISITTDCLGVV 135
           Y      P +      VL   L  + +     +  H    LA         +  +    +
Sbjct: 67  YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH---ALA-------AKLLQENDTTL 116

Query: 136 LELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGL-ALFG 179
           ++   ++     A I+    + K  + ++F         L A+FG
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161



 Score = 31.6 bits (71), Expect = 0.25
 Identities = 33/206 (16%), Positives = 55/206 (26%), Gaps = 90/206 (43%)

Query: 32  ISVAVAFVVSLLFGIAGYATF---TGNVQGDLLENYC--------------------WYD 68
           +S+ ++  +  +  +A Y       G   G+L                         W +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW-E 290

Query: 69  DLMNLARLA--FSFTI----LLTYPIECL------------------------VTRSVL- 97
                 R A    F I       YP   L                        +T+  + 
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350

Query: 98  --LQVLNAYHSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNG----VLAAVP--LAF 149
             +   N++    KQ     + I L+                 NG    V++  P  L  
Sbjct: 351 DYVNKTNSHLPAGKQ-----VEISLV-----------------NGAKNLVVSGPPQSLYG 388

Query: 150 ILPALSYLKLESGSI-----FSKQKL 170
           +   L   K  SG       FS++KL
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKL 414



 Score = 29.2 bits (65), Expect = 1.2
 Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 36/129 (27%)

Query: 9   HNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTG-NVQ---GDLLENY 64
           H+  L       AS  +   L      V+F    +  I  Y TF G +++   G + E  
Sbjct: 428 HSHLL-----VPASDLINKDLV--KNNVSFNAKDI-QIPVYDTFDGSDLRVLSGSISERI 479

Query: 65  CWYDDLMNL-----ARLAFSFTILLTY-P-----IECLV--------TRSVLLQVLNAYH 105
              D ++ L         F  T +L + P     +  L          R ++   L+   
Sbjct: 480 V--DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537

Query: 106 STDKQHVGF 114
             D    GF
Sbjct: 538 DDD---YGF 543


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 32.2 bits (72), Expect = 0.063
 Identities = 5/19 (26%), Positives = 11/19 (57%), Gaps = 1/19 (5%)

Query: 158 KLESG-SIFSKQKLPALGL 175
           KL++   +++    PAL +
Sbjct: 24  KLQASLKLYADDSAPALAI 42


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0725    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,250,232
Number of extensions: 183219
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 7
Length of query: 221
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 131
Effective length of database: 4,188,903
Effective search space: 548746293
Effective search space used: 548746293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.0 bits)